RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780739|ref|YP_003065152.1| hypothetical protein
CLIBASIA_03130 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345
          {Chromobacterium violaceum [TaxId: 536]}
          Length = 59

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 27/54 (50%), Positives = 35/54 (64%)

Query: 9  DPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDD 62
          D + LEILVCPL KG L       EL+ K   LA+PI+ G+P+ML SEAR++  
Sbjct: 1  DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARELAP 54


>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
          {Corynebacterium glutamicum [TaxId: 1718]}
          Length = 59

 Score = 79.3 bits (196), Expect = 8e-17
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 8  IDPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDDQ 63
          +DPQLLE+L CP  KG L  +     L++++ +LAY I  G+P++L+ EA +    
Sbjct: 3  LDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEATEWTPN 58


>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779
          {Pseudomonas fluorescens [TaxId: 294]}
          Length = 59

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 30/51 (58%), Positives = 38/51 (74%)

Query: 12 LLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQVDD 62
          LL+IL CP+ KG L L ++ TEL+SK A LAYPIR G+P+ML SEAR +  
Sbjct: 3  LLDILACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVMLESEARTLTT 53


>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 345

 Score = 24.5 bits (53), Expect = 2.5
 Identities = 12/51 (23%), Positives = 16/51 (31%)

Query: 9   DPQLLEILVCPLTKGNLTLISEGTELLSKKASLAYPIRSGVPIMLVSEARQ 59
           D   L      L  G  + I    E+  K   L   I SG    +    R+
Sbjct: 87  DCVFLVDTYDTLKAGVPSAIRVAREMGDKINFLGVRIDSGDMAYISKRVRE 137


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
          GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 24.0 bits (52), Expect = 3.4
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 38 KASLAYPIRSGVPIMLVSEARQVDDQG 64
          +A+LA+   S   +++ + + QV+  G
Sbjct: 28 EAALAFDRNSTRKVLIEATSNQVNQFG 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.375 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 200,283
Number of extensions: 6140
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 5
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)