HHsearch results for GI: 254780740 and protein with PDBid: 3ljc_A
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00 E-value=1.1e-40 Score=273.77 Aligned_cols=216 Identities=20% Similarity=0.244 Sum_probs=179.8
Q ss_pred CHHHCCH-HHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEE
Q ss_conf 5100796-678431553330873578885123431838999999999970993266201234334466435211001324
Q gi|254780740|r 5 NTIYKNR-EDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGR 83 (221)
Q Consensus 5 ~~~~~~~-~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~ 83 (221)
|-+.|++ .+=+-.||+|||+|+|+|||+.+||+||||||++|+++|+++++.||++++++...+.++.+++|+|||+|+
T Consensus 4 ~~~~mn~~~~~~~~LPv~PL~~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~i~lv~~~~~~~e~~~~~~l~~vGtl~~ 83 (252)
T 3ljc_A 4 HHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVAS 83 (252)
T ss_dssp ----------CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEE
T ss_conf 33567977677623779981891117992558886989999999999834995699972466667887666535456999
Q ss_pred EECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-H-HHH
Q ss_conf 21013466662489875421111010002454068999952222254102456788865788998865103201-3-577
Q gi|254780740|r 84 ITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDA-D-WES 161 (221)
Q Consensus 84 I~~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~ 161 (221)
|.++.++|||++.|+++|.+||+|.+ +....||..|.++...++.....+..+....+.+.++++........ + ...
T Consensus 84 I~~~~~~~dG~~~i~v~g~~R~~i~~-~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 162 (252)
T 3ljc_A 84 ILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTS 162 (252)
T ss_dssp ECCCBCCTTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred EEEEEECCCCCEEEEEEEEEECCCCE-EEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 98877548986999997764023210-33202323334301257654435788999999999999998667789999988
Q ss_pred H-HHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCC
Q ss_conf 7-63053579999998679998999998536898999999999999--999997423210349
Q gi|254780740|r 162 I-EEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK--IVLARAYTHCENRLQ 221 (221)
Q Consensus 162 i-~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le--~el~~~~~~~~~~vq 221 (221)
+ ...+++.++|++|++++++.++||+|||+.|+.+|+++++++|+ .++.+..+++..+|+
T Consensus 163 ~~~~~~~~~l~d~ia~~l~~~~~ekQ~lLe~~d~~~Rl~~l~~~L~~e~e~~~l~~~I~~~v~ 225 (252)
T 3ljc_A 163 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK 225 (252)
T ss_dssp TTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 753489999999999747999889986764699999999999999999999999999999999