HHsearch results for GI: 254780740 and protein with PDBid: 3ljc_A

>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00  E-value=1.1e-40  Score=273.77  Aligned_cols=216  Identities=20%  Similarity=0.244  Sum_probs=179.8

Q ss_pred             CHHHCCH-HHCCCCCCEEECCCCEECCCCCCCEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHEEEEEE
Q ss_conf             5100796-678431553330873578885123431838999999999970993266201234334466435211001324
Q gi|254780740|r    5 NTIYKNR-EDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQIGCIGR   83 (221)
Q Consensus         5 ~~~~~~~-~~lp~~lPi~PL~~~VlFP~~~~pL~Ife~ry~~~i~~~l~~~~~igiv~~~~~~~~~~~~~~l~~vGt~a~   83 (221)
                      |-+.|++ .+=+-.||+|||+|+|+|||+.+||+||||||++|+++|+++++.||++++++...+.++.+++|+|||+|+
T Consensus         4 ~~~~mn~~~~~~~~LPv~PL~~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~i~lv~~~~~~~e~~~~~~l~~vGtl~~   83 (252)
T 3ljc_A            4 HHHHMNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFTVGTVAS   83 (252)
T ss_dssp             ----------CCCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSSCCSSSBCSEEEEEE
T ss_pred             CCCCCCCCCCCCCEEEEEEECCEEECCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEE
T ss_conf             33567977677623779981891117992558886989999999999834995699972466667887666535456999


Q ss_pred             EECCCCCCCCCEEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH-H-HHH
Q ss_conf             21013466662489875421111010002454068999952222254102456788865788998865103201-3-577
Q gi|254780740|r   84 ITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDA-D-WES  161 (221)
Q Consensus        84 I~~~~~~~dG~~~i~v~G~~R~kI~~~~~~~~py~~a~v~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~  161 (221)
                      |.++.++|||++.|+++|.+||+|.+ +....||..|.++...++.....+..+....+.+.++++........ + ...
T Consensus        84 I~~~~~~~dG~~~i~v~g~~R~~i~~-~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  162 (252)
T 3ljc_A           84 ILQMLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTS  162 (252)
T ss_dssp             ECCCBCCTTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             EEEEEECCCCCEEEEEEEEEECCCCE-EEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             98877548986999997764023210-33202323334301257654435788999999999999998667789999988


Q ss_pred             H-HHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHCCCC
Q ss_conf             7-63053579999998679998999998536898999999999999--999997423210349
Q gi|254780740|r  162 I-EEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMK--IVLARAYTHCENRLQ  221 (221)
Q Consensus       162 i-~~~~~~~l~d~iA~~l~~~~~eKQ~lLE~~~~~~Rl~~l~~~Le--~el~~~~~~~~~~vq  221 (221)
                      + ...+++.++|++|++++++.++||+|||+.|+.+|+++++++|+  .++.+..+++..+|+
T Consensus       163 ~~~~~~~~~l~d~ia~~l~~~~~ekQ~lLe~~d~~~Rl~~l~~~L~~e~e~~~l~~~I~~~v~  225 (252)
T 3ljc_A          163 LNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK  225 (252)
T ss_dssp             TTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             753489999999999747999889986764699999999999999999999999999999999