BLAST/PSIBLAST alignment of GI: 254780740 and GI: 116254296 at iteration 1
>gi|116254296|ref|YP_770134.1| ATP-dependent protease [Rhizobium leguminosarum bv. viciae 3841] Length = 228
>gi|115258944|emb|CAK10053.1| putative ATP-dependent protease [Rhizobium leguminosarum bv. viciae 3841] Length = 228
 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 157/226 (69%), Gaps = 8/226 (3%)

Query: 1   MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60
           M++GN  Y    DLP  + +FPL G LLLP  +   ++FE RY+AM D+ L G+RLIG+V
Sbjct: 6   MQVGNARYLKPGDLPDAIAVFPLTGALLLPAGQLPLNIFEPRYLAMLDAALTGNRLIGMV 65

Query: 61  QPAISGFLANSDNG----LSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNS 116
           QPA+     + D G    L+ +GC+GRITSF ET DG YI+++ GVCRFRLLEE    + 
Sbjct: 66  QPALG---EHEDKGGEPNLAAVGCLGRITSFAETGDGRYIVSLTGVCRFRLLEEKATSHP 122

Query: 117 WRCFYIAPFISDLAGNDNDG-VDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLA 175
           +R F IAPFI+DL+  + +G VDR ALL  F+ YL  N L+ADWES+E ASN  LVNSLA
Sbjct: 123 FRTFRIAPFIADLSAENEEGAVDRAALLTAFKAYLDANKLEADWESVERASNLTLVNSLA 182

Query: 176 MLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCENRLQ 221
           M+SPF   EKQALLEAPD + RA+TLIAI +IVLAR +   +  LQ
Sbjct: 183 MMSPFGPAEKQALLEAPDLKTRAETLIAITEIVLARVFGDSDTVLQ 228