RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain
protein [Candidatus Liberibacter asiaticus str. psy62]
         (221 letters)



>gnl|CDD|182730 PRK10787, PRK10787, DNA-binding ATP-dependent protease La;
           Provisional.
          Length = 784

 Score = 36.5 bits (84), Expect = 0.006
 Identities = 44/197 (22%), Positives = 89/197 (45%), Gaps = 14/197 (7%)

Query: 18  LPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQ 77
           +P+ PL  +++ P       V   + I   ++ +  D+ I LV    +       N L  
Sbjct: 11  IPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDEPGVNDLFT 70

Query: 78  IGCIGRITSFVETDDGHYIMTVIGVCRFRL--LEEAYQLNSWRCFYI-APFISDLAGNDN 134
           +G +  I   ++  DG   + V G+ R R+  L +  +  S +  Y+ +P I +    + 
Sbjct: 71  VGTVASILQMLKLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTIDE---REQ 127

Query: 135 DGVDRVALLEVFRNYLTVNN-----LDADWESIEEASNEILVNSLAMLSPFSEEEKQALL 189
           + + R A+ + F  Y+ +N      +     SI++ +   L +++A   P    +KQ++L
Sbjct: 128 EVLVRTAISQ-FEGYIKLNKKIPPEVLTSLNSIDDPAR--LADTIAAHMPLKLADKQSVL 184

Query: 190 EAPDFRARAQTLIAIMK 206
           E  D   R + L+A+M+
Sbjct: 185 EMSDVNERLEYLMAMME 201


>gnl|CDD|162028 TIGR00763, lon, ATP-dependent protease La.  This protein is induced
           by heat shock and other stresses in E. coli, B.
           subtilis, and other species. The yeast member,
           designated PIM1, is located in the mitochondrial matrix,
           required for mitochondrial function, and also induced by
           heat shock.
          Length = 775

 Score = 35.4 bits (82), Expect = 0.011
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 33/210 (15%)

Query: 19  PIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLSQ- 77
           P+ PL    L PG      V   + I +    L   +    +      FL   D+     
Sbjct: 1   PLLPLRRRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGL------FLQKDDDNEEPE 54

Query: 78  ------IGCIGRITSFVETDDGH---YIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISD 128
                 +G + +I   +         Y + V G+ R R+ E      S +  Y+   + +
Sbjct: 55  EDDIYSVGVVAQILEMLPLPSSGTATYKVVVEGLRRIRIKEL-----SDKGGYLVVRVDN 109

Query: 129 LAGNDNDGVDRV------ALLEVFRNYLTVNNLDADWESIEEASNEI-----LVNSLAML 177
           L     D  D         + E FR  ++++ L  +  ++  A  +I     L + +A  
Sbjct: 110 LKEEPFDKDDEEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADFVAAS 169

Query: 178 SPFSE-EEKQALLEAPDFRARAQTLIAIMK 206
               E +E Q +LE  +   R +  + ++K
Sbjct: 170 LQLKEKDELQEVLETVNIEKRLKKALELLK 199


>gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone
           oxidoreductase, chain M.  This model describes the 13th
           (based on E. coli) structural gene, M, of bacterial NADH
           dehydrogenase I, as well as chain 4 of the corresponding
           mitochondrial complex I and of the chloroplast NAD(P)H
           dehydrogenase complex.
          Length = 479

 Score = 26.8 bits (60), Expect = 5.0
 Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 96  IMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGNDNDGVDRVAL-LEVFRNYLTVNN 154
           +++++ + +F      +Q          P+I  L  + + GVD ++L L +    LT+ +
Sbjct: 38  LLSLLLLFQFDPTGSGFQFTESI-----PWIPALGISYHLGVDGISLPLVLLTALLTLLS 92

Query: 155 LDADWESIEEASNEILVNSLAMLS 178
           + A WESI++   E     L + +
Sbjct: 93  ILASWESIQKRVKEFYALFLLLEA 116


>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine
           synthase, clade II.  This model represents a
           single-molecule form of
           phosphoribosylformylglycinamidine synthase, also called
           FGAM synthase, an enzyme of purine de novo biosynthesis.
           This model represents a second clade of these enzymes
           found in Clostridia, Bifidobacteria and Streptococcus
           species. This enzyme performs the fourth step in IMP
           biosynthesis (the precursor of all purines) from PRPP.
          Length = 1239

 Score = 26.3 bits (58), Expect = 7.0
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 150 LTVNNLDADWESIEEASNEILVNSLAMLSPFSEEEKQALLEAPDFRARAQTLIAIMKIVL 209
           L VN    D E +E A        L  + P   E+K+  +E P   +  + + A  K+  
Sbjct: 922 LKVNGEKLDLEELESA----WEGKLEEVFPSKFEDKKETVEVPAVASEKKVIKAKEKVEK 977

Query: 210 ARAY------THCE 217
            R        T+ E
Sbjct: 978 PRVVIPVFPGTNSE 991


>gnl|CDD|181461 PRK08535, PRK08535, translation initiation factor IF-2B subunit
           delta; Provisional.
          Length = 310

 Score = 26.0 bits (58), Expect = 7.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 8/34 (23%)

Query: 67  FLANSDNGLSQIGCIG--RITSFVETDDGHYIMT 98
           F+ +S+N + +IG IG  RI       DG  IMT
Sbjct: 99  FIESSENAVEKIGEIGAKRI------RDGDVIMT 126


>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.
          Length = 1157

 Score = 26.2 bits (58), Expect = 7.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 183 EEKQALLEAPDFRARAQTLIAI 204
            E+Q  L  P FRARAQ L A+
Sbjct: 259 AEQQKQLADPAFRARAQGLAAV 280


>gnl|CDD|163115 TIGR03032, TIGR03032, conserved hypothetical protein TIGR03032.
           This protein family is uncharacterized. A number of
           motifs are conserved perfectly among all member
           sequences. The function of this protein is unknown.
          Length = 335

 Score = 26.2 bits (58), Expect = 7.9
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 11/64 (17%)

Query: 124 PFISDLAGNDNDGVDRVALLEVFRNYLTV---NNLDADWES--------IEEASNEILVN 172
           PFIS LA  D   ++ +AL +    Y+T    +++   W          I+  S E++ +
Sbjct: 141 PFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVAS 200

Query: 173 SLAM 176
            L+M
Sbjct: 201 GLSM 204


>gnl|CDD|149155 pfam07920, DUF1684, Protein of unknown function (DUF1684).  The
           sequences featured in this family are found in
           hypothetical archaeal and bacterial proteins of unknown
           function. The region in question is approximately 200
           amino acids long.
          Length = 142

 Score = 25.6 bits (57), Expect = 9.1
 Identities = 8/37 (21%), Positives = 10/37 (27%)

Query: 82  GRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWR 118
            R      T          G   F L  + Y L  +R
Sbjct: 28  PRPVEVETTTGRTVEYVRYGEVEFELDGKEYTLRVYR 64


>gnl|CDD|128994 smart00755, Grip, golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
           
          Length = 46

 Score = 25.6 bits (57), Expect = 9.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 163 EEASNEILVNSLAMLSPFSEEEKQALLEA 191
            E+  E L+  ++ +   S EE Q LLE 
Sbjct: 18  RESERETLLKVISTVLQLSPEEMQKLLEV 46


>gnl|CDD|181395 PRK08341, PRK08341, amidophosphoribosyltransferase; Provisional.
          Length = 442

 Score = 25.6 bits (56), Expect = 9.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 151 TVNNLDADWESIEEASNEILVNSLAMLS 178
           T + L A W S+E+   EI  +SLA LS
Sbjct: 386 TRHELIAAWGSVEDIRKEIGADSLAYLS 413


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,725,830
Number of extensions: 239295
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 17
Length of query: 221
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 131
Effective length of database: 4,049,753
Effective search space: 530517643
Effective search space used: 530517643
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)