BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain
protein [Candidatus Liberibacter asiaticus str. psy62]
(221 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780740|ref|YP_003065153.1| peptidase S16 lon domain protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 221
Score = 453 bits (1165), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60
MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV
Sbjct: 1 MKIGNTIYKNREDLPCLLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLV 60
Query: 61 QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCF 120
QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCF
Sbjct: 61 QPAISGFLANSDNGLSQIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCF 120
Query: 121 YIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPF 180
YIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPF
Sbjct: 121 YIAPFISDLAGNDNDGVDRVALLEVFRNYLTVNNLDADWESIEEASNEILVNSLAMLSPF 180
Query: 181 SEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCENRLQ 221
SEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCENRLQ
Sbjct: 181 SEEEKQALLEAPDFRARAQTLIAIMKIVLARAYTHCENRLQ 221
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 28.5 bits (62), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 30/206 (14%)
Query: 17 LLPIFPLLGMLLLPGSRFSFSVFERRYIAMFDSVLAGDRLIGLVQPAISGFLANSDNGLS 76
+ P+ PL +++ P V + + D + + I LV + +N +N ++
Sbjct: 27 IYPLLPLRDIVVFPYMIVPLFVGREKSVRALDEAMNSHKKIILV----TQMNSNDENPIA 82
Query: 77 ----QIGCIGRITSFVETDDGHYIMTVIGVCRFRLLEEAYQLNSWRCFYIAPFISDLAGN 132
+IG I I + DG + V G R R++E R ++ L
Sbjct: 83 SSVYRIGTIVDIVQILRLPDGTVKILVEGSVRARIVEYI-----EREDFLEAITQVLPDP 137
Query: 133 DNDGVDRVAL----LEVFRNYLTVNN--------LDADWESIEEASNEILVNSLAMLSPF 180
D V+ AL + F NY+ +N + + E + ++ I N ++
Sbjct: 138 TEDPVELEALSRSVIAEFSNYIKLNKKISPEVIGITSQIEGFSKLADVIAANLSIKVA-- 195
Query: 181 SEEEKQALLEAPDFRARAQTLIAIMK 206
E+Q +LEA + R + L+ M+
Sbjct: 196 ---ERQKILEAVSVKERLEMLLVFME 218
>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
Length = 499
Score = 26.6 bits (57), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 128 DLAGNDNDGVDRVA-LLEVFRNYLTVNNLDADWESIEEASNEILVNSLAM 176
D + + GVD ++ LL V +LT + + W+SI+E E ++ L +
Sbjct: 72 DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVL 121
>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 346
Score = 24.6 bits (52), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 3 IGNTIYKNREDLPCLLP---IFPLLGML---LLPGSRFSFSVFERRYIAMFDSVLAGDRL 56
+G + YKN D+ L+P I P +G + L P SR +R++ F+SVL L
Sbjct: 248 VGLSFYKNNADVLKLVPIDGIVPSMGTIVSGLYPISRPLLFYVKRQH---FNSVLG---L 301
Query: 57 IGLVQPAISGFLANSDNGLSQIGCI 81
V ++S + D+ L Q G I
Sbjct: 302 REYVSFSVSDEMMAPDSQLFQYGLI 326
>gi|254781169|ref|YP_003065582.1| ascorbate-specific PTS system enzyme IIC/IIB [Candidatus
Liberibacter asiaticus str. psy62]
Length = 461
Score = 23.9 bits (50), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 113 QLNSWRCFYIAPFISDLAGNDND 135
Q+ SW + IAP++ D + N N
Sbjct: 198 QVASWIAYKIAPYLGDRSENINS 220
>gi|254780504|ref|YP_003064917.1| glucose-6-phosphate 1-dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 492
Score = 22.3 bits (46), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 99 VIGVCRFRLLEEAYQ 113
+IG+CR ++ E+Y+
Sbjct: 47 IIGICRIKMTVESYR 61
>gi|254780569|ref|YP_003064982.1| phosphoribosylaminoimidazole synthetase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 357
Score = 22.3 bits (46), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 34 FSFSVFERRYIAMFDSVLAGDRLIGL 59
F+ ER+ + ++V AGD ++GL
Sbjct: 162 FAVGAVERKELLSPENVCAGDLILGL 187
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.141 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,382
Number of Sequences: 1233
Number of extensions: 5268
Number of successful extensions: 16
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 8
length of query: 221
length of database: 328,796
effective HSP length: 71
effective length of query: 150
effective length of database: 241,253
effective search space: 36187950
effective search space used: 36187950
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 36 (18.5 bits)