HHsearch alignment for GI: 254780741 and conserved domain: PRK11930
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional.
Probab=99.34 E-value=1.8e-08 Score=75.49 Aligned_cols=272 Identities=17% Similarity=0.132 Sum_probs=163.6
Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCCC
Q ss_conf 9779999999999999853369869995410599----99999998518-748980799998987-36880108853777
Q gi|254780741|r 8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVAY 81 (367)
Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~~ 81 (367)
T Consensus 466 EIdL~Ai~~N~~~~r~~l~-p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~Ea~~LR~~Gi~~pIlvl~~~- 543 (824)
T PRK11930 466 EINLDAIVHNLNYYRSKLK-PETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVADEGSELRKAGITLPIMVMNPE- 543 (824)
T ss_pred EEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCC-
T ss_conf 9988999999999997479-99769999963446634999999999849999999259999999974999987993486-
Q ss_pred CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf 80347886138868985672059999998612345---6148996357744310124557864357427888874-----
Q gi|254780741|r 82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK---KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----- 153 (367)
Q Consensus 82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~---~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----- 153 (367)
T Consensus 544 -~~~~~~~~~~~l~~~v~s~~~l~~l~~~~~~~~~~~~~vHlki------------DTG--M~RlGf~~~e~~~l~~~l~ 608 (824)
T PRK11930 544 -LTSFKTIIDYKLEPEVYSFHLLDALIKEAEKKGLTNFPIHIKI------------DTG--MHRLGFEPEDIPELIERLK 608 (824)
T ss_pred -HHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHH
T ss_conf -6779999980891107879999999999997299974089997------------599--9978599899999999998
Q ss_pred --HHCCCEEEEECCCC-CCCCHHHH-HHHHHHHHHH---HHHCCC-------------------CCEEEEECCCCCCCCC
Q ss_conf --31496066530565-66614789-9999999989---865088-------------------7508753377666445
Q gi|254780741|r 154 --EIKNVNGLMFHNNC-ENKSFLCF-SAMLKNIEKE---FGHFIT-------------------QIEWISLGGGIHFTDK 207 (367)
Q Consensus 154 --~~~~i~Gih~H~gs-~~~~~~~~-~~~l~~~~~~---~~~~~~-------------------~l~~idiGGG~~~~~~ 207 (367)
T Consensus 609 ~~~~l~~~gi~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSagi~~~p~~~~DmVR~Gi~LYG~~p 688 (824)
T PRK11930 609 KQSAVIVRSVFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSGIERFPGAQYDMVRLGIGLYGVSA 688 (824)
T ss_pred HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCEEEECCEEECCCC
T ss_conf 28998553667458888999985799999999999999998716887627860789886598446986852835168698
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-------C-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5680789999998754216504530022014574188878878630-------4-4333433335656566400134553
Q gi|254780741|r 208 DYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE-------N-IKNLVIVDSSVEAHVPDYLLYQESA 279 (367)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-------~-~~~~v~vd~g~~~~~~~~~~~~~~~ 279 (367)
T Consensus 689 ~------------------------~~~~~Lkpv~sl~s~I~~ik~v~~Ge~VgYg~t~~a~~~-~~IAtipiGYADG~~ 743 (824)
T PRK11930 689 S------------------------GNQIKLRNVSTLKTTILQIRDIPKGDTVGYSRKGRVEKP-SRIATIPIGYADGLN 743 (824)
T ss_pred C------------------------CCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEECCCC-CEEEEEEECCCCCCC
T ss_conf 8------------------------877796660899999999998385698679995582899-689999523102766
Q ss_pred CCCCCC------CCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECC
Q ss_conf 000247------86459986233366645521356677887989999688
Q gi|254780741|r 280 TIYPNT------GPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDV 323 (367)
Q Consensus 280 ~~~~~~------~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~ 323 (367)
T Consensus 744 R~lsn~~g~Vli~G~~~pivGrIcM--D~~mvDvt~i~~~~GDeV~l~G~ 791 (824)
T PRK11930 744 RHLGNGVGYVLVNGKKAPIVGNICM--DMCMIDVTDIHANEGDKVIIFGE 791 (824)
T ss_pred CCCCCCCCEEEECCEEEEEEEEEEC--CEEEEECCCCCCCCCCEEEEECC
T ss_conf 2257998389999999225648733--56999888998999999999899