HHsearch alignment for GI: 254780741 and conserved domain: cd06828

>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00  E-value=0  Score=600.23  Aligned_cols=343  Identities=20%  Similarity=0.270  Sum_probs=302.3

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
T Consensus         2 GTP~yv~d~~~l~~~~~~l~~~~~~~~~~i~yAvKaN~~~~il~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp~   81 (373)
T cd06828           2 GTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGNG   81 (373)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             99889988999999999999860458978999862279999999999859918997999999999849995459981764


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf             7803478861388-6898567205999999861234--56148996357744310124557864357427888874----
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----  153 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----  153 (367)
T Consensus        82 K~~~~i~~A~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~  161 (373)
T cd06828          82 KSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRA  161 (373)
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             11378999997398567629999999999862761998549999888988777762313775321389999999999999


Q ss_pred             ---HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHHHH
Q ss_conf             ---31496066530565666147899999999989865---08875087533776664455----680789999998754
Q gi|254780741|r  154 ---EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH---FITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEFSE  223 (367)
Q Consensus       154 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~---~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~  223 (367)
T Consensus       162 ~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~~l~  241 (373)
T cd06828         162 KELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEALK  241 (373)
T ss_pred             HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             85799846887886476668879999999999999999997499865774368746457888899899999999999999


Q ss_pred             HC-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEE
Q ss_conf             21-----65045300220145741888788786304-43334333356565664001345530002----4786459986
Q gi|254780741|r  224 KY-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVC  293 (367)
Q Consensus       224 ~~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~  293 (367)
T Consensus       242 ~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~D~g~~~~~rP~ly~~~~~i~~~~~~~~~~~~~~~v~  321 (373)
T cd06828         242 ELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEIVPVNKPGEGETEKVDVV  321 (373)
T ss_pred             HHHCCCCCCEEEEECCHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf             97424898679990426865067569999999996498089997786344556565177561176488888982489998


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             2333666455213566778879899996887022324347689988779999
Q gi|254780741|r  294 GRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       294 G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
T Consensus       322 Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~FNg~p~p~~V~v  373 (373)
T cd06828         322 GPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVLV  373 (373)
T ss_pred             CCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf             3698988788846427899999999992986223755487779999978979