HHsearch alignment for GI: 254780741 and conserved domain: cd06836
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=0 Score=564.82 Aligned_cols=344 Identities=18% Similarity=0.242 Sum_probs=292.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C
Q ss_conf 8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V 79 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~ 79 (367)
T Consensus 1 ~~~~~~vyD~~~i~~~~~~~~~afp-~~~~~~YAvKaN~~p~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp 79 (379)
T cd06836 1 VHPAVGLYDLDGFRALVARLTAAFP-APVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSP 79 (379)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf 9985899629999999999998589-986189998338999999999984997897399999999985999899898899
Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-----H
Q ss_conf 778034788613886898567205999999861234---56148996357744310124557864357427888-----8
Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH---KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK-----I 151 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~---~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~-----~ 151 (367)
T Consensus 80 ~K~~~~l~~A~~~Gv~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~ 159 (379)
T cd06836 80 AKTRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEII 159 (379)
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999999739920348989999999999862997525899971687766754344689989858881477899999
Q ss_pred HHH--HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----C-CCCEEEEECCCCCCCCCC----CCCHHHHHHHHH
Q ss_conf 743--14960665305656661478999999999898650----8-875087533776664455----680789999998
Q gi|254780741|r 152 ESE--IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----I-TQIEWISLGGGIHFTDKD----YPVKDFCQRLKE 220 (367)
Q Consensus 152 ~~~--~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~-~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~ 220 (367)
T Consensus 160 ~~~~~~~~l~GlhfHvGSq~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~ 239 (379)
T cd06836 160 DAFARRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKA 239 (379)
T ss_pred HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99826797006898778888898999999999999999998860877632650378745467888889899999999999
Q ss_pred HHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCC---CC-----C-CCCC
Q ss_conf 75421---65045300220145741888788786304-43334333356565664001345530---00-----2-4786
Q gi|254780741|r 221 FSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESAT---IY-----P-NTGP 287 (367)
Q Consensus 221 ~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~---~~-----~-~~~~ 287 (367)
T Consensus 240 ~l~~~f~~~~~li~EPGR~lva~ag~ll~~V~~vK~~~~~~~~i~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (379)
T cd06836 240 AVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPKTGPE 319 (379)
T ss_pred HHHHHCCCCCEEEECCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE
T ss_conf 99975166856886055323046159999999999739868999951665553100243337446784067778678983
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 45998623336664552135667788798999968870223243476899887799996
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKN 346 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~ 346 (367)
T Consensus 320 ~~~~v~Gp~C~~~D~l~~~~~lP~l~~GD~l~i~~~GAY~~s~~s~fN~~prPav~~v~ 378 (379)
T cd06836 320 VVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR 378 (379)
T ss_pred EEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE
T ss_conf 49999866878587986364888899999999879770506561888799888289972