HHsearch alignment for GI: 254780741 and conserved domain: cd06836

>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00  E-value=0  Score=564.82  Aligned_cols=344  Identities=18%  Similarity=0.242  Sum_probs=292.5

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C
Q ss_conf             8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~   79 (367)
T Consensus         1 ~~~~~~vyD~~~i~~~~~~~~~afp-~~~~~~YAvKaN~~p~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp   79 (379)
T cd06836           1 VHPAVGLYDLDGFRALVARLTAAFP-APVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSP   79 (379)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf             9985899629999999999998589-986189998338999999999984997897399999999985999899898899


Q ss_pred             CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-----H
Q ss_conf             778034788613886898567205999999861234---56148996357744310124557864357427888-----8
Q gi|254780741|r   80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH---KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK-----I  151 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~---~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~-----~  151 (367)
T Consensus        80 ~K~~~~l~~A~~~Gv~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~  159 (379)
T cd06836          80 AKTRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEII  159 (379)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             89999999999739920348989999999999862997525899971687766754344689989858881477899999


Q ss_pred             HHH--HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----C-CCCEEEEECCCCCCCCCC----CCCHHHHHHHHH
Q ss_conf             743--14960665305656661478999999999898650----8-875087533776664455----680789999998
Q gi|254780741|r  152 ESE--IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----I-TQIEWISLGGGIHFTDKD----YPVKDFCQRLKE  220 (367)
Q Consensus       152 ~~~--~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~-~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~  220 (367)
T Consensus       160 ~~~~~~~~l~GlhfHvGSq~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~  239 (379)
T cd06836         160 DAFARRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKA  239 (379)
T ss_pred             HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99826797006898778888898999999999999999998860877632650378745467888889899999999999


Q ss_pred             HHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCC---CC-----C-CCCC
Q ss_conf             75421---65045300220145741888788786304-43334333356565664001345530---00-----2-4786
Q gi|254780741|r  221 FSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESAT---IY-----P-NTGP  287 (367)
Q Consensus       221 ~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~---~~-----~-~~~~  287 (367)
T Consensus       240 ~l~~~f~~~~~li~EPGR~lva~ag~ll~~V~~vK~~~~~~~~i~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
T cd06836         240 AVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPKTGPE  319 (379)
T ss_pred             HHHHHCCCCCEEEECCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE
T ss_conf             99975166856886055323046159999999999739868999951665553100243337446784067778678983


Q ss_pred             EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf             45998623336664552135667788798999968870223243476899887799996
Q gi|254780741|r  288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKN  346 (367)
Q Consensus       288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~  346 (367)
T Consensus       320 ~~~~v~Gp~C~~~D~l~~~~~lP~l~~GD~l~i~~~GAY~~s~~s~fN~~prPav~~v~  378 (379)
T cd06836         320 VVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR  378 (379)
T ss_pred             EEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE
T ss_conf             49999866878587986364888899999999879770506561888799888289972