HHsearch alignment for GI: 254780741 and conserved domain: cd06839
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=0 Score=574.65 Aligned_cols=341 Identities=18% Similarity=0.211 Sum_probs=289.7
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367)
T Consensus 6 GTP~yv~d~~~i~~~~~~l~~alp~-~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~ 84 (382)
T cd06839 6 GTPFYVYDRDRVRERYAALRAALPP-AIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKILFAGPG 84 (382)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 9988998799999999999985899-975999970489999999999749909998999999999859995310761687
Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---
Q ss_conf 7803478861388-68985672059999998612345--61489963577443101245578643574278888743---
Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE--- 154 (367)
Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~--- 154 (367)
T Consensus 85 K~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~-~~~~g~~skFGi~~~~~~~~~~~~ 163 (382)
T cd06839 85 KSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSG-MKMGGGPSQFGIDVEELPAVLARI 163 (382)
T ss_pred CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8889999999839957643867999999999986399746999981588778776-144788544589999999999999
Q ss_pred ----HCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHH
Q ss_conf ----14960665305656661478----999999999898650887508753377666445----568078999999875
Q gi|254780741|r 155 ----IKNVNGLMFHNNCENKSFLC----FSAMLKNIEKEFGHFITQIEWISLGGGIHFTDK----DYPVKDFCQRLKEFS 222 (367)
Q Consensus 155 ----~~~i~Gih~H~gs~~~~~~~----~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~~i~~~~ 222 (367)
T Consensus 164 ~~~~~l~~~Glh~H~GS~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~y~~~~~~~d~~~~~~~i~~~~ 243 (382)
T cd06839 164 AALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGETPLDLEALGAALAALL 243 (382)
T ss_pred HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 84689837888983577778979999999999999999898659885177505873767889899989999999999999
Q ss_pred HHC-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCC-----CCCC-C---CCCCC
Q ss_conf 421-----65045300220145741888788786304-43334333356565664001345-----5300-0---24786
Q gi|254780741|r 223 EKY-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQE-----SATI-Y---PNTGP 287 (367)
Q Consensus 223 ~~~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~-----~~~~-~---~~~~~ 287 (367)
T Consensus 244 ~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 323 (382)
T cd06839 244 AELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQVLRRNYPLAILNRMGGEER 323 (382)
T ss_pred HHHHHCCCCCEEEEECCCEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCCCHHHCCHHHHHCCCCCEEECCCCCCCCE
T ss_conf 98642058968999135003215717999999998359957999907533441232232565314760782478888981
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEE
Q ss_conf 45998623336664552135667788798999968870223243-47689988779999
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVK 345 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~ 345 (367)
T Consensus 324 ~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~PaeVlV 382 (382)
T cd06839 324 ETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVLV 382 (382)
T ss_pred EEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 69999898888877987054678899999999959866177750301369999888879