Query         gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 367
No_of_seqs    119 out of 2648
Neff          7.8 
Searched_HMMs 39220
Date          Sun May 29 19:21:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780741.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01048 lysA diaminopimelate 100.0       0       0  720.2  32.2  363    3-366    24-430 (431)
  2 cd06829 PLPDE_III_CANSDC Type  100.0       0       0  620.3  34.2  342    4-346     1-346 (346)
  3 PRK11165 diaminopimelate decar 100.0       0       0  609.5  34.9  355    3-366    17-410 (412)
  4 COG0019 LysA Diaminopimelate d 100.0       0       0  603.7  33.1  344    2-345    25-394 (394)
  5 cd06828 PLPDE_III_DapDC Type I 100.0       0       0  600.2  34.6  343    3-345     2-373 (373)
  6 PRK08961 bifunctional aspartat 100.0       0       0  584.6  33.5  340    2-346   504-864 (865)
  7 TIGR03099 dCO2ase_PEP1 pyridox 100.0       0       0  579.7  34.0  341    3-345    24-398 (398)
  8 cd06843 PLPDE_III_PvsE_like Ty 100.0       0       0  576.6  34.4  342    3-345     1-377 (377)
  9 cd06810 PLPDE_III_ODC_DapDC_li 100.0       0       0  574.5  34.8  340    4-345     1-368 (368)
 10 cd06839 PLPDE_III_Btrk_like Ty 100.0       0       0  574.6  34.4  341    3-345     6-382 (382)
 11 cd06840 PLPDE_III_Bif_AspK_Dap 100.0       0       0  567.7  33.3  337    4-345    12-368 (368)
 12 cd06836 PLPDE_III_ODC_DapDC_li 100.0       0       0  564.8  34.3  344    2-346     1-378 (379)
 13 cd06841 PLPDE_III_MccE_like Ty 100.0       0       0  558.1  35.1  338    2-349     5-379 (379)
 14 cd00622 PLPDE_III_ODC Type III 100.0       0       0  555.7  34.2  333    3-345     1-362 (362)
 15 TIGR01047 nspC carboxynorsperm 100.0       0       0  550.5  22.3  365    2-366     1-403 (403)
 16 cd06842 PLPDE_III_Y4yA_like Ty 100.0       0       0  526.1  33.1  331    3-345     9-423 (423)
 17 cd06830 PLPDE_III_ADC Type III 100.0       0       0  522.0  33.6  342    3-345     4-409 (409)
 18 cd06831 PLPDE_III_ODC_like_AZI 100.0       0       0  516.3  32.9  335    3-349    12-385 (394)
 19 KOG0622 consensus              100.0       0       0  432.0  25.9  348    3-362    55-441 (448)
 20 pfam02784 Orn_Arg_deC_N Pyrido 100.0       0       0  338.4  24.0  227   10-240     1-245 (245)
 21 PRK05354 arginine decarboxylas 100.0 1.1E-35 2.7E-40  254.9  32.7  364    2-366    62-588 (634)
 22 COG1166 SpeA Arginine decarbox 100.0 2.1E-31 5.3E-36  226.5  29.7  362    2-364    78-605 (652)
 23 cd06808 PLPDE_III Type III Pyr 100.0 7.7E-33   2E-37  236.0  17.8  196   14-235     1-211 (211)
 24 pfam00278 Orn_DAP_Arg_deC Pyri  99.9 1.2E-22 3.2E-27  168.7   7.9  103  243-345     1-110 (110)
 25 cd06818 PLPDE_III_cryptic_DSD   99.7 2.5E-14 6.3E-19  114.1  26.9  318    2-351     1-376 (382)
 26 cd06820 PLPDE_III_LS_D-TA_like  99.7 9.3E-14 2.4E-18  110.2  25.9  302    2-348     1-341 (353)
 27 TIGR01273 speA arginine decarb  99.7 9.4E-15 2.4E-19  116.8  16.2  364    2-366    61-607 (657)
 28 cd06812 PLPDE_III_DSD_D-TA_lik  99.7 4.6E-12 1.2E-16   99.1  28.7  314    2-353     4-366 (374)
 29 cd06819 PLPDE_III_LS_D-TA Type  99.6   1E-12 2.5E-17  103.5  25.0  302    2-351     5-348 (358)
 30 cd06821 PLPDE_III_D-TA Type II  99.6 7.1E-12 1.8E-16   97.9  24.6  300    2-348     7-345 (361)
 31 cd06815 PLPDE_III_AR_like_1 Ty  99.5 3.5E-11 8.8E-16   93.3  24.4  312    4-336     1-349 (353)
 32 PRK03646 dadX alanine racemase  99.5 1.9E-10 4.8E-15   88.4  27.9  294    5-324     3-325 (355)
 33 cd00430 PLPDE_III_AR Type III   99.5 2.4E-10 6.1E-15   87.8  26.1  291    6-324     3-333 (367)
 34 cd06827 PLPDE_III_AR_proteobac  99.5 3.2E-10 8.1E-15   87.0  26.6  288    8-324     5-324 (354)
 35 cd06817 PLPDE_III_DSD Type III  99.5 6.8E-11 1.7E-15   91.4  23.0  318    2-351     4-379 (389)
 36 PRK00053 alr alanine racemase;  99.5 3.2E-10 8.2E-15   86.9  24.8  295    5-324     3-330 (360)
 37 cd06813 PLPDE_III_DSD_D-TA_lik  99.4 3.8E-10 9.7E-15   86.5  23.6  319    2-348     9-372 (388)
 38 PRK13340 alanine racemase; Rev  99.4 3.5E-09 8.9E-14   80.1  24.0  290    8-323    43-368 (404)
 39 PRK11930 putative bifunctional  99.3 1.8E-08 4.5E-13   75.5  26.6  272    8-323   466-791 (824)
 40 cd06826 PLPDE_III_AR2 Type III  99.3 1.8E-08 4.7E-13   75.4  26.7  283    9-323     6-330 (365)
 41 COG3616 Predicted amino acid a  99.2 4.5E-08 1.2E-12   72.8  24.1  315    1-357    15-364 (368)
 42 cd06825 PLPDE_III_VanT Type II  99.2 7.7E-08   2E-12   71.2  24.8  289    9-324     6-334 (368)
 43 COG0787 Alr Alanine racemase [  99.2 6.5E-08 1.6E-12   71.8  23.9  292    4-323     3-328 (360)
 44 cd07376 PLPDE_III_DSD_D-TA_lik  99.2 5.9E-08 1.5E-12   72.0  23.6  306   14-351     2-337 (345)
 45 cd06811 PLPDE_III_yhfX_like Ty  99.2 1.9E-07 4.7E-12   68.7  24.9  289    2-320    26-348 (382)
 46 cd06814 PLPDE_III_DSD_D-TA_lik  99.1 2.1E-07 5.2E-12   68.4  23.3  152    2-166     7-178 (379)
 47 pfam01168 Ala_racemase_N Alani  99.1 5.1E-08 1.3E-12   72.4  18.5  176    9-200     1-189 (216)
 48 COG3457 Predicted amino acid r  99.0 2.7E-08 6.8E-13   74.3  14.9  302    4-334     3-345 (353)
 49 TIGR00492 alr alanine racemase  98.7 3.8E-05 9.8E-10   53.5  21.8  297    7-322     6-346 (383)
 50 cd06824 PLPDE_III_Yggs_like Py  96.2    0.11 2.8E-06   30.7  14.8  174   12-199     7-199 (224)
 51 cd00635 PLPDE_III_YBL036c_like  95.9    0.15 3.8E-06   29.9  17.4  174   12-199     6-198 (222)
 52 cd06822 PLPDE_III_YBL036c_euk   88.7     1.9 4.7E-05   22.6  16.9  177   11-201     5-203 (227)
 53 COG0325 Predicted enzyme with   84.5     3.1 7.9E-05   21.1  15.0  175   11-199     7-200 (228)
 54 PRK08207 coproporphyrinogen II  84.3     2.9 7.3E-05   21.3   5.3   50  186-235   221-272 (497)
 55 TIGR00873 gnd 6-phosphoglucona  84.0     3.2 8.3E-05   21.0   7.0  131   64-205    17-184 (480)
 56 PRK04036 DNA polymerase II sma  83.9       1 2.6E-05   24.3   2.9   75  160-236   241-332 (497)
 57 PRK05449 aspartate alpha-decar  83.1     3.5   9E-05   20.8   6.9   69  285-358    53-121 (126)
 58 TIGR01270 Trp_5_monoox tryptop  81.4     1.6 4.2E-05   23.0   3.1  149   30-193    97-276 (499)
 59 COG1311 HYS2 Archaeal DNA poly  80.9     1.8 4.7E-05   22.6   3.3   75  161-238   232-320 (481)
 60 TIGR02050 gshA_cyan_rel unchar  74.2     2.7 6.9E-05   21.5   2.6   82   83-171    46-140 (297)
 61 pfam01261 AP_endonuc_2 Xylose   73.5     6.8 0.00017   18.9   7.4   79  155-235    39-125 (201)
 62 COG0635 HemN Coproporphyrinoge  71.0     7.7  0.0002   18.5   6.4   10  116-125   124-133 (416)
 63 TIGR00629 uvde UV damage endon  70.6     7.9  0.0002   18.5   4.8  167   71-253    45-235 (345)
 64 cd03347 eu_PheOH Eukaryotic ph  68.8     3.9   1E-04   20.5   2.4   11   99-109   104-114 (306)
 65 cd03345 eu_TyrOH Eukaryotic ty  68.4     8.8 0.00022   18.2   4.2   12   98-109   102-113 (298)
 66 PRK02308 uvsE putative UV dama  67.6     9.1 0.00023   18.1   5.5  132   94-233    41-188 (316)
 67 pfam02261 Asp_decarbox Asparta  66.4     9.6 0.00024   17.9   5.6   62  285-351    53-114 (116)
 68 PRK10461 thiamine biosynthesis  61.6      10 0.00026   17.7   3.4  115  170-308   181-306 (351)
 69 PRK05799 coproporphyrinogen II  61.2      12  0.0003   17.3   5.7  124   90-238    56-197 (374)
 70 pfam00842 Ala_racemase_C Alani  60.2      12 0.00032   17.2   6.8   35  288-324    60-95  (125)
 71 pfam09561 RE_HpaII HpaII restr  56.2     5.4 0.00014   19.5   1.2   22   89-110    86-109 (355)
 72 cd06919 Asp_decarbox Aspartate  55.5      15 0.00038   16.7   5.9   61  284-349    51-111 (111)
 73 COG3220 Uncharacterized protei  52.0      17 0.00043   16.3   5.6  108  141-248    42-155 (282)
 74 TIGR00379 cobB cobyrinic acid   51.6     6.5 0.00017   19.0   1.0   52  190-251   291-346 (464)
 75 COG0853 PanD Aspartate 1-decar  49.2      19 0.00047   16.0   4.9   64  287-356    54-118 (126)
 76 cd06562 GH20_HexA_HexB-like Be  48.5      19 0.00048   15.9   3.2   23    1-23      7-29  (348)
 77 cd03130 GATase1_CobB Type 1 gl  47.2     9.2 0.00023   18.0   1.2   49  188-237    36-86  (198)
 78 COG1477 ApbE Membrane-associat  46.9      20 0.00051   15.8   5.3  109  171-308   171-295 (337)
 79 TIGR00223 panD aspartate 1-dec  46.8      11 0.00028   17.5   1.6   62  285-353    53-117 (127)
 80 TIGR01379 thiL thiamine-monoph  45.0      21 0.00055   15.6   4.1   72  158-230    48-119 (336)
 81 COG1606 ATP-utilizing enzymes   44.0      22 0.00057   15.5   3.2   16  138-153   143-158 (269)
 82 PRK13347 coproporphyrinogen II  43.9      22 0.00057   15.5   5.5   20  166-185   212-231 (453)
 83 PRK08599 coproporphyrinogen II  43.7      22 0.00057   15.5   5.8   34   92-125    58-96  (377)
 84 TIGR01016 sucCoAbeta succinyl-  41.2      24 0.00062   15.2   4.7   53  190-242   281-365 (389)
 85 TIGR01859 fruc_bis_ald_ fructo  41.2      24 0.00062   15.2   5.1  132   86-242     8-153 (339)
 86 KOG0996 consensus               41.1     9.4 0.00024   18.0   0.5   27   83-109   704-732 (1293)
 87 pfam05913 DUF871 Bacterial pro  40.1      25 0.00065   15.1   4.3   29  287-320   326-354 (357)
 88 PRK08005 ribulose-phosphate 3-  39.5      26 0.00066   15.1   4.2   33   94-126    85-117 (210)
 89 cd03008 TryX_like_RdCVF Trypar  39.2      26 0.00065   15.1   2.5   32  150-182    19-50  (146)
 90 PRK05731 thiamine monophosphat  39.0      26 0.00067   15.0   5.4   72  158-230    48-119 (320)
 91 TIGR01520 FruBisAldo_II_A fruc  38.6      27 0.00068   15.0   3.3   88  104-201    92-184 (365)
 92 cd06564 GH20_DspB_LnbB-like Gl  37.0      28 0.00072   14.8   6.0   23    1-23      6-28  (326)
 93 pfam05114 DUF692 Protein of un  36.4      29 0.00074   14.7   6.5   93  147-239    47-145 (275)
 94 COG1792 MreC Cell shape-determ  35.6      30 0.00076   14.7   5.9   81  231-324   144-225 (284)
 95 TIGR01759 MalateDH-SF1 malate   35.6      30 0.00076   14.6   3.7   50  311-365   260-313 (329)
 96 cd03274 ABC_SMC4_euk Eukaryoti  35.4      17 0.00043   16.3   1.1   40  210-251   166-208 (212)
 97 PRK05904 coproporphyrinogen II  35.4      30 0.00077   14.6   6.1   50  184-237   146-200 (353)
 98 PRK09249 coproporphyrinogen II  34.2      31  0.0008   14.5   5.7   19  166-184   213-231 (456)
 99 PRK13518 carboxylate-amine lig  34.0      32 0.00081   14.5   5.6  140  102-254    75-247 (357)
100 PRK05628 coproporphyrinogen II  33.5      32 0.00082   14.4   4.6   19  166-184   168-186 (376)
101 PRK08446 coproporphyrinogen II  33.3      32 0.00082   14.4   5.4   98  116-238    86-197 (351)
102 PRK13516 carboxylate-amine lig  32.9      33 0.00084   14.4   5.5   65  103-171    75-145 (372)
103 TIGR02716 C20_methyl_CrtF C-20  32.9      33 0.00084   14.4   4.7   16  188-203   146-161 (306)
104 PRK12425 fumarate hydratase; P  32.8      28 0.00072   14.8   1.8   31  170-200   197-227 (464)
105 TIGR02062 RNase_B exoribonucle  32.5      33 0.00085   14.3   3.2   66  239-304   581-647 (664)
106 PRK05409 hypothetical protein;  32.4      33 0.00085   14.3   6.2  153  148-305    51-220 (283)
107 cd06569 GH20_Sm-chitobiase-lik  31.9      34 0.00087   14.3   4.6   30  172-201   179-208 (445)
108 TIGR00292 TIGR00292 thiazole b  31.9      12  0.0003   17.3  -0.2   19  184-202    38-62  (283)
109 TIGR01108 oadA oxaloacetate de  31.3      35 0.00089   14.2   7.3  206   36-248    18-294 (616)
110 cd00739 DHPS DHPS subgroup of   31.0      35  0.0009   14.2   4.9   19  187-205   160-180 (257)
111 pfam04537 Herpes_UL55 Herpesvi  30.7      36 0.00091   14.1   2.8   32  155-186   127-159 (171)
112 PRK06836 aspartate aminotransf  30.0      37 0.00094   14.1   5.7  103   70-189    95-205 (396)
113 TIGR00575 dnlj DNA ligase, NAD  29.9      37 0.00094   14.1   2.2   12   51-62    110-121 (706)
114 pfam09871 DUF2098 Uncharacteri  29.8      31 0.00079   14.5   1.6   33  232-264     4-37  (91)
115 cd06568 GH20_SpHex_like A subg  29.4      37 0.00096   14.0   6.8   42  192-233   154-197 (329)
116 PRK13905 murB UDP-N-acetylenol  29.0      28 0.00072   14.8   1.3   19   96-114    35-53  (298)
117 PRK12273 aspA aspartate ammoni  28.7      39 0.00098   13.9   2.7   31  170-200   201-231 (471)
118 cd06530 S26_SPase_I The S26 Ty  28.3      39   0.001   13.9   3.0   31  295-325    12-45  (85)
119 PRK09856 fructoselysine 3-epim  28.1      39   0.001   13.8   5.3   50  182-233    95-149 (276)
120 KOG1344 consensus               27.9      40   0.001   13.8   2.6   29  196-224   135-168 (324)
121 PTZ00170 D-ribulose-5-phosphat  27.7      40   0.001   13.8   2.8   41   86-126    79-122 (224)
122 pfam02738 Ald_Xan_dh_C2 Molybd  27.6      40   0.001   13.8   3.9   21  341-361   467-488 (543)
123 TIGR01268 Phe4hydrox_tetr phen  27.5      33 0.00085   14.3   1.4   10   30-39     19-28  (445)
124 PRK08745 ribulose-phosphate 3-  27.3      41   0.001   13.8   3.0   41   86-126    78-121 (223)
125 PRK05581 ribulose-phosphate 3-  27.3      41   0.001   13.8   3.3   33   94-126    88-120 (220)
126 PRK13489 chemoreceptor glutami  27.2      27 0.00069   14.9   1.0   22  181-202   129-150 (237)
127 PRK07379 coproporphyrinogen II  27.2      41   0.001   13.7   4.9   19  166-184   175-193 (399)
128 pfam03328 HpcH_HpaI HpcH/HpaI   27.0      41  0.0011   13.7   5.2   28   75-102     3-31  (221)
129 cd04497 hPOT1_OB1_like hPOT1_O  26.9      41  0.0011   13.7   3.4   37  289-325    40-82  (138)
130 cd06563 GH20_chitobiase-like T  26.7      42  0.0011   13.7   4.2  107    1-133     7-113 (357)
131 pfam02873 MurB_C UDP-N-acetyle  26.5      42  0.0011   13.7   2.3   12  222-233    88-99  (103)
132 PRK13515 carboxylate-amine lig  26.5      42  0.0011   13.7   5.9  136  104-254    70-240 (381)
133 PRK13353 aspartate ammonia-lya  26.2      43  0.0011   13.6   2.1   31  170-200   199-229 (473)
134 pfam00834 Ribul_P_3_epim Ribul  26.2      43  0.0011   13.6   3.2   91   94-202    84-175 (201)
135 pfam04989 CmcI Cephalosporin h  25.8      10 0.00026   17.7  -1.4   28  215-242    21-48  (202)
136 PRK13906 murB UDP-N-acetylenol  25.6      43  0.0011   13.6   1.8   20   96-115    41-60  (307)
137 COG1797 CobB Cobyrinic acid a,  25.2      35  0.0009   14.2   1.2   61  175-236   260-333 (451)
138 PRK05660 coproporphyrinogen II  25.1      45  0.0011   13.5   5.5   52  184-239   150-206 (378)
139 PRK08898 coproporphyrinogen II  24.7      45  0.0012   13.4   4.7   32  207-238   182-218 (393)
140 TIGR03471 HpnJ hopanoid biosyn  24.6      46  0.0012   13.4   6.0   85   29-114    46-140 (472)
141 TIGR01893 aa-his-dipept aminoa  24.4      26 0.00065   15.1   0.4   23   89-111   157-179 (506)
142 TIGR00020 prfB peptide chain r  23.8      47  0.0012   13.3   3.7   42  160-201   135-177 (373)
143 cd03275 ABC_SMC1_euk Eukaryoti  23.8      35 0.00088   14.2   1.0   20  147-166   114-133 (247)
144 PRK13896 cobyrinic acid a,c-di  23.7      24 0.00061   15.3   0.1   48  188-237   269-318 (432)
145 PRK08883 ribulose-phosphate 3-  23.7      47  0.0012   13.3   3.0   91   94-202    85-176 (220)
146 TIGR00074 hypC_hupF hydrogenas  23.6      46  0.0012   13.4   1.6   24  290-322    32-55  (88)
147 cd00429 RPE Ribulose-5-phospha  23.4      48  0.0012   13.3   3.3   32   94-125    84-115 (211)
148 pfam08902 DUF1848 Domain of un  23.2      39   0.001   13.9   1.2   23  104-126    99-122 (264)
149 PRK10115 protease 2; Provision  23.1      41   0.001   13.7   1.3   49  316-364   445-510 (686)
150 COG1027 AspA Aspartate ammonia  23.0      49  0.0012   13.2   2.9   36  170-205   200-238 (471)
151 PRK11613 folP dihydropteroate   22.9      49  0.0012   13.2   4.8   19  238-256   246-264 (282)
152 cd01089 PA2G4-like Related to   22.9      49  0.0013   13.2   2.7   21  210-230   145-165 (228)
153 COG2047 Uncharacterized protei  22.7      49  0.0013   13.2   3.4   66  180-247   106-176 (258)
154 TIGR01124 ilvA_2Cterm threonin  22.5      38 0.00096   14.0   1.0  190   53-269    68-310 (508)
155 PRK13487 chemoreceptor glutami  22.3      38 0.00097   13.9   1.0   26  177-202   127-152 (201)
156 pfam04273 DUF442 Putative phos  21.9      51  0.0013   13.1   6.8   45   73-117     7-59  (110)
157 pfam00728 Glyco_hydro_20 Glyco  21.8      51  0.0013   13.1   3.7   23    1-23      7-29  (335)
158 PRK13493 chemoreceptor glutami  21.8      32 0.00081   14.5   0.5   26  178-203   140-165 (214)
159 PRK08807 consensus              21.5      52  0.0013   13.0   5.2   33  207-239   171-208 (385)
160 PRK09058 coproporphyrinogen II  21.5      52  0.0013   13.0   4.9   20  165-184   217-236 (447)
161 KOG2263 consensus               21.3      53  0.0013   13.0   3.6   79    2-83    206-296 (765)
162 COG1770 PtrB Protease II [Amin  21.3      53  0.0013   13.0   2.8   54  311-364   443-513 (682)
163 TIGR01163 rpe ribulose-phospha  21.2      53  0.0014   13.0   3.8  100   86-203    74-179 (216)
164 TIGR00700 GABAtrnsam 4-aminobu  21.0      54  0.0014   13.0   2.3   12   39-50     49-60  (427)
165 PRK08208 coproporphyrinogen II  20.8      54  0.0014   13.0   5.4   50  184-237   190-244 (436)
166 TIGR03234 OH-pyruv-isom hydrox  20.8      54  0.0014   13.0   7.3   13  221-233   131-143 (254)
167 TIGR01588 citE citrate lyase,   20.8      54  0.0014   12.9   2.5   82   41-122    13-118 (288)
168 PRK09989 hypothetical protein;  20.1      56  0.0014   12.9   6.4   10  157-166    98-107 (258)

No 1  
>TIGR01048 lysA diaminopimelate decarboxylase; InterPro: IPR002986   Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine.   Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. These conserved motifs suggest a common structural arrangement for positioning of substrate and the cofactor pyridoxal 5'-phosphate among bacterial DAP decarboxylases, eukaryotic ornithine decarboxylases and arginine decarboxylases .   The structure of bacterial diaminopimelate decarboxylase has been determined . ; GO: 0008836 diaminopimelate decarboxylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=100.00  E-value=0  Score=720.22  Aligned_cols=363  Identities=21%  Similarity=0.271  Sum_probs=323.3

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCC----CCC
Q ss_conf             8856897799999999999998533---6986999541059999999998518748980799998987-3688----010
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKN---AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFG----GET   74 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~---~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~----~~~   74 (367)
                      +||+||||++.||+|+++++++|..   ..+.|+||+|||+|++|++++.++|.||||+|.+|+..|+ +|++    +++
T Consensus        24 GTPLYVyd~~~l~~~~~~~~~AF~~~~~~~~~v~YA~KAn~Nl~~~~~la~~G~G~D~VS~GEL~~A~~AG~~~~~~~~~  103 (431)
T TIGR01048        24 GTPLYVYDEATLRERFEAYKEAFGAAERESALVCYAVKANSNLALLRLLAELGSGFDVVSGGELYRALAAGFPLQEIPEK  103 (431)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCC
T ss_conf             89879816789999999999873015877531587431407688999999638846887016999999808885566643


Q ss_pred             EEECC-CCCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH--
Q ss_conf             88537-778034788613886-8985672059999998612345--61489963577443101245578643574278--
Q gi|254780741|r   75 HAYNV-AYKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCK--  148 (367)
Q Consensus        75 i~~~~-~~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~--  148 (367)
                      |+||+ +|+.+||+.|++.+. +||+||++||++|.++|++.|.  +|.|||||++.+++|+.++||.+.||||++.+  
T Consensus       104 i~F~Gn~Ks~~El~~Al~~~i~~~nVdS~~El~~l~~~A~e~G~~~~i~~RvNP~VdakTHpyI~TG~~~sKFG~~~~sG  183 (431)
T TIGR01048       104 IVFSGNGKSRAELERALELGIRCINVDSFSELELLNEIAPELGKKARISLRVNPDVDAKTHPYISTGLKDSKFGIDVESG  183 (431)
T ss_pred             EEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC
T ss_conf             68965877889999999637989997688999999973521385589999726887598783122100036547774575


Q ss_pred             HHHHH-------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCCCC----CCHH
Q ss_conf             88874-------31496066530565666147899999999989865----088750875337766644556----8078
Q gi|254780741|r  149 DKIES-------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH----FITQIEWISLGGGIHFTDKDY----PVKD  213 (367)
Q Consensus       149 ~~~~~-------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~----~~~~l~~idiGGG~~~~~~~~----~~~~  213 (367)
                      +..+.       ...++.|||||+|||+.+.++|..+.+.+.+++++    ++.++++||+||||+++|.+.    ++.+
T Consensus       184 ~a~~~~~~a~~~~~l~~vG~H~HIGSQi~d~~Pf~~A~~~v~~~~~~l~~~yG~~l~~ld~GGGLGi~Y~~e~~~p~~~~  263 (431)
T TIGR01048       184 EALEAYLYALQLENLEIVGIHCHIGSQILDLSPFVEAAEKVVKLVEELKAEYGIDLEFLDLGGGLGIPYTPEEEPPDLSE  263 (431)
T ss_pred             CCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCCHHH
T ss_conf             31789999983789938998643373010234079999999999998888716007999838722240068888669899


Q ss_pred             HHHHHHHHHHH-----C-CCEEEEEHHHHCCCCCEEEEEEEEEEECC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999987542-----1-65045300220145741888788786304-4-333433335656566400134553000247
Q gi|254780741|r  214 FCQRLKEFSEK-----Y-SVQIYLEPGEAIVTNTTTLNTTVLDISEN-I-KNLVIVDSSVEAHVPDYLLYQESATIYPNT  285 (367)
Q Consensus       214 ~~~~i~~~~~~-----~-~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~-~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~  285 (367)
                      |++.+....++     . +++||+||||||||+||+|||||..+|++ . ++||+||||||.+|||++|..+|++...+.
T Consensus       264 yA~~~~~~l~~~~~~g~~~~~li~EPGRslVa~aG~Llt~V~~~K~~~~~r~Fv~VDaGMNDliRPalY~AyH~i~~~~~  343 (431)
T TIGR01048       264 YAQAILAALEGYARLGLPDPKLILEPGRSLVANAGVLLTRVGFVKEVGSVRNFVIVDAGMNDLIRPALYGAYHHIIVANR  343 (431)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCEEEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCEEEEECCC
T ss_conf             99999999886775279963799922600020451789987668746857899998077550012564336325775266


Q ss_pred             ------CCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEE-EECC
Q ss_conf             ------864599862333666455213566778879899996887022324347689988779999679909999-7389
Q gi|254780741|r  286 ------GPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAI-REFS  358 (367)
Q Consensus       286 ------~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~-r~e~  358 (367)
                            ..++++|+||+|||+|+|++++.+|++++||+|++.+||||++|||||||++|||++|++++ |++.+| ||||
T Consensus       344 Dr~~~~~~~~~~vvGp~CESGD~l~~Dr~Lp~~e~GD~lav~~aGAYG~SMSSnYN~rpR~AEVLv~~-g~~~LIR~RET  422 (431)
T TIGR01048       344 DRTNEEPTEVADVVGPICESGDVLAKDRELPEVEPGDLLAVFSAGAYGFSMSSNYNSRPRPAEVLVEG-GQARLIRRRET  422 (431)
T ss_pred             CCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCEEEEEEC-CEEEEEEEECC
T ss_conf             67566772168971783445440014124544478857997247874314423016667623567867-82899996168


Q ss_pred             HHHHHHHC
Q ss_conf             89998742
Q gi|254780741|r  359 YNDYYNNL  366 (367)
Q Consensus       359 ~~d~~~~~  366 (367)
                      ++|+++..
T Consensus       423 ~~Dl~~~e  430 (431)
T TIGR01048       423 YEDLLALE  430 (431)
T ss_pred             HHHHHHHC
T ss_conf             79998532


No 2  
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00  E-value=0  Score=620.31  Aligned_cols=342  Identities=45%  Similarity=0.807  Sum_probs=317.1

Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEECCCCCH
Q ss_conf             85689779999999999999853369869995410599999999985187489807999989873688010885377780
Q gi|254780741|r    4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYNVAYKD   83 (367)
Q Consensus         4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~~~~~~   83 (367)
                      |||||||++.|++|+++++.+++.++++++||+||||+++|+++|++.|+|+||+|++|+++|++.++++.|+|+|++++
T Consensus         1 TP~YVyd~~~i~~n~~~~~~~~~~~~~~i~YA~KAN~~~~il~~l~~~g~G~d~~S~~E~~la~~~~~~~~~~~~~~~~~   80 (346)
T cd06829           1 TPCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREEFGGEVHTYSPAYRD   80 (346)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCEEECCCCCH
T ss_conf             98999759999999999999773389879998824288899999997499699749999999741068764675687998


Q ss_pred             HHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE
Q ss_conf             34788613886898567205999999861234561489963577443101245578643574278888743149606653
Q gi|254780741|r   84 CEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMF  163 (367)
Q Consensus        84 ~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~  163 (367)
                      +||+++++.+..|++||++||+++.++++..+.+|+|||||+++..+++.+++|.+.||||++.+++.+....++.|+||
T Consensus        81 ~el~~~~~~~~~i~~ds~~El~~i~~~~~~~~~~V~lRINP~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~i~Glh~  160 (346)
T cd06829          81 DEIDEILRLADHIIFNSLSQLERFKDRAKAAGISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEEEDLDGIEGLHF  160 (346)
T ss_pred             HHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf             99999997299899889999999998740589749999858987776766057898440378799987877735861477


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEE
Q ss_conf             05656661478999999999898650887508753377666445568078999999875421650453002201457418
Q gi|254780741|r  164 HNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTT  243 (367)
Q Consensus       164 H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~  243 (367)
                      |++||+ +.+.+.+.++.+.+.+.+...++++||+||||++++++++++.+++.++++.++++++|++||||||||+||+
T Consensus       161 H~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~id~GGG~~i~~~~~d~~~~~~~i~~~~~~~~~~liiEPGR~lVa~aG~  239 (346)
T cd06829         161 HTLCEQ-DFDALERTLEAVEERFGEYLPQLKWLNLGGGHHITRPDYDVDRLIALIKRFKEKYGVEVYLEPGEAVALNTGY  239 (346)
T ss_pred             EECCCC-CHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCEE
T ss_conf             633675-6999999999999999975210144551377666788879999999999999763973685363400435357


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEE
Q ss_conf             887887863044333433335656566400134553000----2478645998623336664552135667788798999
Q gi|254780741|r  244 LNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIY----PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRIS  319 (367)
Q Consensus       244 lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~  319 (367)
                      +|++|+++|+++++|+++|+|+++||++.+.+++++.+.    +.+...+|+|+||+|+++|+|+++.+++++++||+|+
T Consensus       240 llt~V~~ik~~g~~~~i~D~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~v~Gp~Ces~Dvl~~~~~~~~l~~GD~l~  319 (346)
T cd06829         240 LVATVLDIVENGMPIAILDASATAHMPDVLEMPYRPPIRGAGEPGEGAHTYRLGGNSCLAGDVIGDYSFDEPLQVGDRLV  319 (346)
T ss_pred             EEEEEEEEEECCEEEEEEECCCCCCCCHHHCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCEEE
T ss_conf             99999999509778999836210376155514654233047888788846999878988867888666888999999999


Q ss_pred             EECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf             968870223243476899887799996
Q gi|254780741|r  320 FEDVAGYNINRKNWFNGINMPTIAVKN  346 (367)
Q Consensus       320 i~~~GAY~~~~~~~Fn~~~~P~~v~~~  346 (367)
                      |.++||||++|+|+||++|+|++|+++
T Consensus       320 i~~~GAY~~smas~yN~~p~Pavv~~d  346 (346)
T cd06829         320 FEDMAHYTMVKTNTFNGVRLPSIAIRD  346 (346)
T ss_pred             ECCCCHHHHHHHCCCCCCCCCCEEEEC
T ss_conf             915758766763127899998579839


No 3  
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00  E-value=0  Score=609.52  Aligned_cols=355  Identities=15%  Similarity=0.209  Sum_probs=301.8

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCC----CCEEE
Q ss_conf             88568977999999999999985336986999541059999999998518748980799998987-36880----10885
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGG----ETHAY   77 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~----~~i~~   77 (367)
                      +|||||||++.|++|+++++.+     ..++||+||||+++|++++++.|+|+||+|.+|+++|+ +||++    ++|+|
T Consensus        17 GTP~yVyd~~~i~~~~~~l~~~-----~~i~YAvKAN~~~~il~~l~~~G~g~DvaS~gEl~~al~aG~~~~~~~~~Iif   91 (412)
T PRK11165         17 GTPVWVYDADIIRRQIAQLKQF-----DVIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAAGYSPGTEPDDIVF   91 (412)
T ss_pred             CCCEEEEEHHHHHHHHHHHHCC-----CCEEEEHHHCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf             9987998699999999986266-----82488626488899999999849966887999999999759998998552387


Q ss_pred             C-CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---
Q ss_conf             3-777803478861388689856720599999986123456148996357744310124557864357427888874---
Q gi|254780741|r   78 N-VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---  153 (367)
Q Consensus        78 ~-~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---  153 (367)
                      + |.|+.++++.+++.+..+++||++||++|.++++  +.+|+|||||++..+++...++|++.||||++.+++.+.   
T Consensus        92 ~g~~k~~~~l~~a~~~gv~in~ds~~eL~~i~~~~~--~~~V~lRiNP~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~  169 (412)
T PRK11165         92 TADLIDRATLARVSELKIPVNAGSIDMLDQLGQVSP--GHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAV  169 (412)
T ss_pred             CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             786579999999998499782287899999986466--884699956886877664334688755567899999999999


Q ss_pred             ---HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHH----HHHH
Q ss_conf             ---3149606653056566614789999999998986508875087533776664455----6807899999----9875
Q gi|254780741|r  154 ---EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRL----KEFS  222 (367)
Q Consensus       154 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i----~~~~  222 (367)
                         ...++.|||||+|||+ +...+.+.++.+.+...+++.++++|||||||+++|.+    .+++++...+    +.+.
T Consensus       170 ~~~~~l~~~GlH~HiGS~i-~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGfgv~Y~~~~~~~d~~~~~~~~~~~~~~i~  248 (412)
T PRK11165        170 IQRYGLKLVGIHMHIGSGV-DYGHLEQVCGAMVRQVIELGQDIEAISAGGGLSIPYRSGEEPVDTEHYFGLWNAARKQIA  248 (412)
T ss_pred             HHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9867997898889538887-769999999999999998088731576158666478889889899999999999999999


Q ss_pred             HHC--CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-------CCCEEEE
Q ss_conf             421--65045300220145741888788786304-4333433335656566400134553000-24-------7864599
Q gi|254780741|r  223 EKY--SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY-PN-------TGPYTAM  291 (367)
Q Consensus       223 ~~~--~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~  291 (367)
                      +.+  +++|++||||||||+||++||+|+++|++ +++|+++|+|||+++||.+|..+++... +.       ....+++
T Consensus       249 ~~~~~~~~l~iEPGR~lva~aG~llt~V~~~K~~~~~~~~~vD~Gmn~l~rpalyga~h~i~~~~~~~~~~~~~~~~~~~  328 (412)
T PRK11165        249 RHLGHPVKLEIEPGRFLVAESGVLVTQVRAVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISVLAADGRSLEHAPLVETV  328 (412)
T ss_pred             HHCCCCCEEEECCCCEEECCCCEEEEEEEEEEECCCCCEEEECCCHHCCCCCHHCCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf             85299846998257267315528999999999728765899725420154302213454268825667776568755689


Q ss_pred             EECCCCCCCCEEEEC-------CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHH
Q ss_conf             862333666455213-------5667788798999968870223243476899887799996799099997-38989998
Q gi|254780741|r  292 VCGRSCLAGDIFGEF-------HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYY  363 (367)
Q Consensus       292 v~G~~C~~~D~l~~~-------~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~  363 (367)
                      |+||+|+|+|+|+++       +.+|++++||+|+|.++|||+++|+|+||++|+|++|+++ +|+.+++| |||+||++
T Consensus       329 v~Gp~Ces~D~l~~~~~~~i~~~~LP~l~~GD~l~i~~~GAY~~smss~yN~rp~paeVlv~-~g~~~lir~ret~edl~  407 (412)
T PRK11165        329 VAGPLCESGDVFTQQEGGVVETRALPQVKVGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELL  407 (412)
T ss_pred             EECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE-CCEEEEEEECCCHHHHH
T ss_conf             88679886243343666531444488899989999916881617660212599988089999-99999998089999997


Q ss_pred             HHC
Q ss_conf             742
Q gi|254780741|r  364 NNL  366 (367)
Q Consensus       364 ~~~  366 (367)
                      ++.
T Consensus       408 ~~e  410 (412)
T PRK11165        408 ALE  410 (412)
T ss_pred             HHC
T ss_conf             403


No 4  
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=603.69  Aligned_cols=344  Identities=27%  Similarity=0.358  Sum_probs=307.2

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C
Q ss_conf             8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~   79 (367)
                      .+|||||||++.|++|+++++.+++..+++++||+|||+++.|+++|+++|+|+||+|++|+++|++ |+++++|+|+ +
T Consensus        25 ~gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~gEl~~al~aG~~~~~I~f~g~  104 (394)
T COG0019          25 FGTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGELELALAAGFPPERIVFSGP  104 (394)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCHHEEEECCC
T ss_conf             69988998479999999999986156781599997468987999999973888653489999999983999220999189


Q ss_pred             CCCHHHHHHHHCCCCE-EEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH---H---
Q ss_conf             7780347886138868-98567205999999861234561489963577443101245578643574278888---7---
Q gi|254780741|r   80 AYKDCEIDAVLSNCDT-IIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI---E---  152 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~-i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~---~---  152 (367)
                      +|+++||+.|++.+.. |++||++||++|.+++.+...+|+|||||+++.++|+.+++|.+.||||++.+++.   +   
T Consensus       105 ~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~~~~  184 (394)
T COG0019         105 AKSEEEIAFALELGIKLINVDSEEELERLSAIAPGLVARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLERAA  184 (394)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999999869938997999999999986456674499998899877758666778630236989889899999986


Q ss_pred             -HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCCCC-CC---CHHHHHHHHHHHH
Q ss_conf             -4314960665305656661478999999999898650----8875087533776664455-68---0789999998754
Q gi|254780741|r  153 -SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----ITQIEWISLGGGIHFTDKD-YP---VKDFCQRLKEFSE  223 (367)
Q Consensus       153 -~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~~~l~~idiGGG~~~~~~~-~~---~~~~~~~i~~~~~  223 (367)
                       ....++.|+|||+|||+.+.+.|..+++.+.+++.++    |.++++||+||||+++|.+ ++   ++.+++.+++..+
T Consensus       185 ~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~gi~Y~~~~~~~~~~~~~~~l~~~~~  264 (394)
T COG0019         185 KLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGLGITYEDEYDPPDLAAYAKALKEAFG  264 (394)
T ss_pred             HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             46788248999851787888089999999999999998875088740899669857687887884019999999999985


Q ss_pred             H--CCCEEEEEHHHHCCCCCEEEEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCEEEEEECCC
Q ss_conf             2--1650453002201457418887887863044-333433335656566400134553000--2--4786459986233
Q gi|254780741|r  224 K--YSVQIYLEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPDYLLYQESATIY--P--NTGPYTAMVCGRS  296 (367)
Q Consensus       224 ~--~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~-~~~v~vd~g~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~G~~  296 (367)
                      +  .+++|++||||+||++||+|+|+|+++|+++ ++|+++|+||+++|||++++++++...  .  +...+++.|+||+
T Consensus       265 ~~~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly~a~~~~~~~~~~~~~~~~~~~v~G~~  344 (394)
T COG0019         265 EYAEDVELILEPGRAIVANAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALYGAYHHIRLNRTDEDAEREEYDVVGPT  344 (394)
T ss_pred             HCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             15678659983775775154369999999997077269998034423867777587443312456678873799998787


Q ss_pred             CCCCCEEEECCCCCCC-CCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             3666455213566778-879899996887022324347689988779999
Q gi|254780741|r  297 CLAGDIFGEFHFEKPV-KIGDRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       297 C~~~D~l~~~~~~~~l-~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
                      |+++|+|+.++.+|++ ++||+|+|.++|||+++|+++||++|+|++|++
T Consensus       345 CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~v  394 (394)
T COG0019         345 CESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVLV  394 (394)
T ss_pred             CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf             68887771212378768989999990463267766043569899853559


No 5  
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00  E-value=0  Score=600.23  Aligned_cols=343  Identities=20%  Similarity=0.270  Sum_probs=302.3

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|+++++++++.++++++||+||||++.+++.+++.|+|+||+|.+|+++|++ |+++++|+|+ |.
T Consensus         2 GTP~yv~d~~~l~~~~~~l~~~~~~~~~~i~yAvKaN~~~~il~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp~   81 (373)
T cd06828           2 GTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGNG   81 (373)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             99889988999999999999860458978999862279999999999859918997999999999849995459981764


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf             7803478861388-6898567205999999861234--56148996357744310124557864357427888874----
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----  153 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----  153 (367)
                      |+++||+.|++.+ ..|++||++||++|.+++++.+  .+|+|||||+++..+++..+++.+.||||++.+++.+.    
T Consensus        82 K~~~~i~~A~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~  161 (373)
T cd06828          82 KSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRA  161 (373)
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf             11378999997398567629999999999862761998549999888988777762313775321389999999999999


Q ss_pred             ---HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHHHH
Q ss_conf             ---31496066530565666147899999999989865---08875087533776664455----680789999998754
Q gi|254780741|r  154 ---EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH---FITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEFSE  223 (367)
Q Consensus       154 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~---~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~  223 (367)
                         ...++.|||||+|||+.+.+.|.+.++.+.+++++   .+.++++|||||||+++|.+    .+++++++.+++..+
T Consensus       162 ~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~~l~  241 (373)
T cd06828         162 KELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEALK  241 (373)
T ss_pred             HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             85799846887886476668879999999999999999997499865774368746457888899899999999999999


Q ss_pred             HC-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEE
Q ss_conf             21-----65045300220145741888788786304-43334333356565664001345530002----4786459986
Q gi|254780741|r  224 KY-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVC  293 (367)
Q Consensus       224 ~~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~  293 (367)
                      ++     ++++++||||+||++||++||+|+++|++ +++|+++|+||++++||.++..+++....    ....++++|+
T Consensus       242 ~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~D~g~~~~~rP~ly~~~~~i~~~~~~~~~~~~~~~v~  321 (373)
T cd06828         242 ELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEIVPVNKPGEGETEKVDVV  321 (373)
T ss_pred             HHHCCCCCCEEEEECCHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf             97424898679990426865067569999999996498089997786344556565177561176488888982489998


Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             2333666455213566778879899996887022324347689988779999
Q gi|254780741|r  294 GRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       294 G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
                      ||||+++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|++
T Consensus       322 Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~FNg~p~p~~V~v  373 (373)
T cd06828         322 GPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVLV  373 (373)
T ss_pred             CCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf             3698988788846427899999999992986223755487779999978979


No 6  
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00  E-value=0  Score=584.56  Aligned_cols=340  Identities=17%  Similarity=0.157  Sum_probs=297.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-C--CCCCCCEEEC
Q ss_conf             888568977999999999999985336986999541059999999998518748980799998987-3--6880108853
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-E--KFGGETHAYN   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~--g~~~~~i~~~   78 (367)
                      ..||+||||.+.++.+.+.+...-..  -++||||||||+|.||++|.+.|+||||+|.+|++.++ .  |++|++|+|+
T Consensus       504 ~~~~~yvy~~~~~~~~~~~~~~~~~~--d~~fYAVKaN~~P~IL~~La~lG~GFDcaS~gEl~~vL~~~~Gv~p~rIifa  581 (865)
T PRK08961        504 AGTPRYVYHLPTVRARARALAALAAI--DQRYYAIKANPHPAILRTLEEEGFGLECVSIGELRRVFKALPELSPRRVLFT  581 (865)
T ss_pred             CCCCEEEECHHHHHHHHHHHHCCCCH--HHEEEEEECCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf             57973896669999999998632531--1358998508998999999983898366699999999960279593318979


Q ss_pred             -CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-----
Q ss_conf             -77780347886138868985672059999998612345614899635774431012455786435742788887-----
Q gi|254780741|r   79 -VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE-----  152 (367)
Q Consensus        79 -~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~-----  152 (367)
                       |.|+..|+++|++.|..+++||.+||+++.++++  +.+|.|||||+++.+++..+.+|++.+|||++.+++.+     
T Consensus       582 ~~~K~~~ei~~A~~~gV~~t~Ds~~EL~ki~~~~~--~a~v~LRInP~~~~g~h~~istGg~~sKFGi~~~~~~~ll~~A  659 (865)
T PRK08961        582 PSFAPRAEYEAAFALGVTVTVDNVEALRNWPEVFR--GREVWLRIDLGHGDGHHEKVRTGGKESKFGLSSTRIDEFVDLA  659 (865)
T ss_pred             CCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999997799899838999999998778--9859999758999887775137999888898899999999999


Q ss_pred             -HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHC-C
Q ss_conf             -431496066530565666147899999999989865088750875337766644556----8078999999875421-6
Q gi|254780741|r  153 -SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFSEKY-S  226 (367)
Q Consensus       153 -~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~~~~-~  226 (367)
                       ....++.|+|||+|||+.+.+.|.++++.+.++..+++ ++++|||||||+++|.+.    +++.+.+.+.++...+ +
T Consensus       660 k~~gL~vvGihfHVGSg~~d~~~~~~a~~~~~~la~~~~-~l~~LDiGGGfgv~y~~~~~~~d~~~~~~~l~~~~~~~~~  738 (865)
T PRK08961        660 KTLGITVTGLHAHLGSGVETGDHWRRMYDELAGFARRIG-TVETIDIGGGLPIPYSPGDEPFDLDAWDAGLAEVKAVHPG  738 (865)
T ss_pred             HHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             876996799997427788998999999999999998529-9709985899888889998886999999999997603899


Q ss_pred             CEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEECCCCCCCC
Q ss_conf             5045300220145741888788786304-43334333356565664001345530002----478645998623336664
Q gi|254780741|r  227 VQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVCGRSCLAGD  301 (367)
Q Consensus       227 ~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~G~~C~~~D  301 (367)
                      +++|+|||||+|++||+|+++|+++|++ +++|+++|+|||+++||.+|..++++...    +....+++|+||+|+|+|
T Consensus       739 ~~li~EPGRylVa~AG~Llt~V~~ik~~~~~~fv~vDaGmn~liRPaLYga~H~I~~l~~~~~~~~~~~~VvGPiCES~D  818 (865)
T PRK08961        739 YRLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLDAGMNSLIRPALYDAWHEIENLSRLDEPPAGTADVVGPICESSD  818 (865)
T ss_pred             CEEEEECCCEEEECCEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHCCCCCCEEECCCCCCCCCCEEEEECCCCCCCC
T ss_conf             66999688151210118999999997569835999946634555635417645304247778888765689837848862


Q ss_pred             EEEECCCCCC-CCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf             5521356677-88798999968870223243476899887799996
Q gi|254780741|r  302 IFGEFHFEKP-VKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKN  346 (367)
Q Consensus       302 ~l~~~~~~~~-l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~  346 (367)
                      +|++++.+|+ +++||+|+|.|+|||+++|+|+||++|+|++++++
T Consensus       819 ~~~~~~~LP~~~~~GD~L~~~~aGAYg~smaS~yN~Rp~p~Evlvd  864 (865)
T PRK08961        819 VFGKRRRLPAATAPGDVILIADTGAYGYSMASTYNLREPPREVVLD  864 (865)
T ss_pred             EEEECCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCEEEEC
T ss_conf             7411562887689999999918984517762456689998767733


No 7  
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00  E-value=0  Score=579.65  Aligned_cols=341  Identities=14%  Similarity=0.178  Sum_probs=289.2

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|+++++.++.. +++++||+||||++.||++|++.|+|+||+|.+|+++|++ |+++++|+|+ |.
T Consensus        24 ~TPlyVyd~~~l~~~~~~l~~a~p~-~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS~gEl~~al~~G~~~~~Ii~~gp~  102 (398)
T TIGR03099        24 GTPFYAYDRGLVSERVAALRKALPE-ELAIHYAVKANPMPALLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFAGPG  102 (398)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHEEECCCC
T ss_conf             9998996699999999999985799-984999960289999999999819929996999999999849991001778998


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf             78034788613886898567205999999861234--56148996357744310124557864357427888874-----
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-----  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-----  153 (367)
                      |+++||+.|++.+..|++||++||++|.+++++.+  .+|+|||||++....+. ..+++..||||++.+++.+.     
T Consensus       103 K~~~~l~~A~~~gv~i~vDS~~El~~i~~~a~~~~~~~~i~lRinp~~~~~~~~-~~~~~~~sKFGi~~~~~~~~l~~~~  181 (398)
T TIGR03099       103 KTDAELRRALAAGVLINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSG-MKMGGGAKQFGIDAEQVPAALAFIK  181 (398)
T ss_pred             CCHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-EECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             797999988756059964446889999998876599606998616887668786-0128885546789999999999998


Q ss_pred             -HHCCCEEEEECCCCCCCCHHHHHHHHHH----HHHHHHHCCCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHH
Q ss_conf             -3149606653056566614789999999----99898650887508753377666445----56807899999987542
Q gi|254780741|r  154 -EIKNVNGLMFHNNCENKSFLCFSAMLKN----IEKEFGHFITQIEWISLGGGIHFTDK----DYPVKDFCQRLKEFSEK  224 (367)
Q Consensus       154 -~~~~i~Gih~H~gs~~~~~~~~~~~l~~----~~~~~~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~~i~~~~~~  224 (367)
                       ...++.|||||+|||+.+.+.|.+.+..    +.++.++++..+++|||||||+++|.    ..+++.+++.+++..++
T Consensus       182 ~~~l~~~Glh~HiGS~~~~~~~~~~a~~~~~~~~~~l~~~~g~~l~~idiGGGf~v~y~~~~~~~d~~~~~~~i~~~~~~  261 (398)
T TIGR03099       182 AADLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPVRVINIGGGFGIPYFPGNPPLDLAPVGAALAALFAR  261 (398)
T ss_pred             HCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             66992999899269898896999999999999999999975997527762576576778999886999999999999998


Q ss_pred             C-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCC-----CCCCCCCCCC----CCCCCEE
Q ss_conf             1-----65045300220145741888788786304-433343333565656640-----0134553000----2478645
Q gi|254780741|r  225 Y-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDY-----LLYQESATIY----PNTGPYT  289 (367)
Q Consensus       225 ~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~-----~~~~~~~~~~----~~~~~~~  289 (367)
                      +     +++||+|||||||++||++|+||+++|++ +++|+++|+|||+++++.     ++...++...    +.....+
T Consensus       262 ~~~~~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~D~G~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  341 (398)
T TIGR03099       262 LRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISRGETFLVTDGGLHHHLSASGNFGQVIRRNYPVVIGNRIGGAVREI  341 (398)
T ss_pred             HHHCCCCCEEEEECCCEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCEEE
T ss_conf             76127987799906703200671899999999843981799947843025333431034310255056146788987558


Q ss_pred             EEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEE
Q ss_conf             998623336664552135667788798999968870223243-47689988779999
Q gi|254780741|r  290 AMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVK  345 (367)
Q Consensus       290 ~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~  345 (367)
                      ++|+||+|+++|+|+++..+|++++||+|+|.++|||+++|+ ++||++|+|++|++
T Consensus       342 ~~v~Gp~C~s~D~l~~~~~LP~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~paEvlv  398 (398)
T TIGR03099       342 ASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELLV  398 (398)
T ss_pred             EEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf             999912888446888377168899999999948454068762404039999868869


No 8  
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00  E-value=0  Score=576.64  Aligned_cols=342  Identities=16%  Similarity=0.173  Sum_probs=294.9

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEEC-CCC
Q ss_conf             8856897799999999999998533698699954105999999999851874898079999898736880108853-777
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYN-VAY   81 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~-~~~   81 (367)
                      |||.||||+++|++|+++|+.++. .+++++||+||||++.|+++|.+.|+|+||+|.+|++++++++++++|+|+ |.|
T Consensus         1 ~~~~YVyd~~~l~~~~~~l~~a~p-~~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~~~~~~~~~~Iif~gp~K   79 (377)
T cd06843           1 PLCAYVYDLAALRAHARALRASLP-PGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAVPDAPLIFGGPGK   79 (377)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEECCCCC
T ss_conf             986799609999999999998579-9984999960388999999999769968982999999998539996479889999


Q ss_pred             CHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf             803478861388-6898567205999999861234--561489963577443101245578643574278888743----
Q gi|254780741|r   82 KDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----  154 (367)
Q Consensus        82 ~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----  154 (367)
                      +++||+.|++.| ..+++||++||++|.+++++.+  .+|+|||||+.....+....++++.||||++.+++.+..    
T Consensus        80 ~~~~l~~a~~~gv~~i~~DS~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~l~~~~  159 (377)
T cd06843          80 TDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLR  159 (377)
T ss_pred             CHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99999999987998899889999999998788619962899999678777775542058888778989899999999998


Q ss_pred             ---HCCCEEEEECCCCCCCCHHHHHHHHHHHHH----HHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHHHH
Q ss_conf             ---149606653056566614789999999998----986508875087533776664455----680789999998754
Q gi|254780741|r  155 ---IKNVNGLMFHNNCENKSFLCFSAMLKNIEK----EFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEFSE  223 (367)
Q Consensus       155 ---~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~----~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~  223 (367)
                         ..++.|||||+|||+.+.+.|.++++.+.+    +.++++.++++|||||||+++|.+    .+++++++.+++..+
T Consensus       160 ~~~~l~~~Glh~HvGS~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~iDiGGGf~v~y~~~~~~~d~~~~~~~i~~~~~  239 (377)
T cd06843         160 DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLLA  239 (377)
T ss_pred             HCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             28998567777733678889799999999999999999997199731465058624467888888898999999999998


Q ss_pred             HC--CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-C-----------CCCCCE
Q ss_conf             21--65045300220145741888788786304-433343333565656640013455300-0-----------247864
Q gi|254780741|r  224 KY--SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATI-Y-----------PNTGPY  288 (367)
Q Consensus       224 ~~--~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~-~-----------~~~~~~  288 (367)
                      ++  +++|++|||||||++||+++++|+++|++ +++|+++|+|++++++|.++...++.. .           +....+
T Consensus       240 ~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~~d~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (377)
T cd06843         240 EYEPGLTLRFECGRYISAYCGYYVTEVLDLKRSHGEWFAVLRGGTHHFRLPAAWGHNHPFSVLPVEEWPYPWPRPSVRDT  319 (377)
T ss_pred             HCCCCCEEEECCCCEEEECCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             52998779975752787143499999999975199379998155344424134136684488753445555577666775


Q ss_pred             EEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEE
Q ss_conf             5998623336664552135667788798999968870223243-47689988779999
Q gi|254780741|r  289 TAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVK  345 (367)
Q Consensus       289 ~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~  345 (367)
                      +++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|+ ++||++|+|++|++
T Consensus       320 ~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~P~~v~i  377 (377)
T cd06843         320 PVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIYL  377 (377)
T ss_pred             EEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEC
T ss_conf             6999916989988887366878899999999958873017560354349999988869


No 9  
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the  biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to 
Probab=100.00  E-value=0  Score=574.54  Aligned_cols=340  Identities=24%  Similarity=0.343  Sum_probs=296.0

Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CCC
Q ss_conf             85689779999999999999853369869995410599999999985187489807999989873-6880108853-777
Q gi|254780741|r    4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VAY   81 (367)
Q Consensus         4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~~   81 (367)
                      |||||||++.|++|+++++.++. ++++++||+||||++.||+++.+.|+|+||+|++|+++|++ |+++++|+|+ |.|
T Consensus         1 TP~yv~d~~~l~~~~~~~~~~~~-~~~~i~YAvKaN~~~~vl~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp~K   79 (368)
T cd06810           1 TPFYVYDLDIIRAHYAALKEALP-SGVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAK   79 (368)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEEECCCC
T ss_conf             98999869999999999997579-99789999653899999999998599189779999999998599944199945545


Q ss_pred             CHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf             803478861388-6898567205999999861234--561489963577443101245578643574278888743----
Q gi|254780741|r   82 KDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----  154 (367)
Q Consensus        82 ~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----  154 (367)
                      ++++|+.|++.+ ..|++||++||++|.+++++.+  .+|+|||||+.+...+ ..++++..||||++.+++.+..    
T Consensus        80 ~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~i~lRinp~~~~~~~-~~~~~~~~sKFGi~~~~~~~~~~~~~  158 (368)
T cd06810          80 SVSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTH-KISTGGLKSKFGLSLSEARAALERAK  158 (368)
T ss_pred             CCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCE-EECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             30569999975978455579999999999998569997599999448787752-10368887767999999999999998


Q ss_pred             --HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHC--
Q ss_conf             --149606653056566614789999999998986---508875087533776664455--68078999999875421--
Q gi|254780741|r  155 --IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDKD--YPVKDFCQRLKEFSEKY--  225 (367)
Q Consensus       155 --~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~--  225 (367)
                        ..++.|||||+|||+.+.+.|.+.++.+.++++   +.+.++++|||||||+++|.+  .+++++++.+++..+++  
T Consensus       159 ~~~l~l~GlhfH~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~~~y~~~~~~~~~~~~~i~~~~~~~~~  238 (368)
T cd06810         159 ELDLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYFP  238 (368)
T ss_pred             HCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             65996789999768776886999999999999999998629985346437885777888998999999999999998723


Q ss_pred             ---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC---C---CCCCEEEEEECC
Q ss_conf             ---65045300220145741888788786304-4333433335656566400134553000---2---478645998623
Q gi|254780741|r  226 ---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY---P---NTGPYTAMVCGR  295 (367)
Q Consensus       226 ---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~---~---~~~~~~~~v~G~  295 (367)
                         ++++++|||||+|++||+++++|+++|++ +.+|+++|+|+++++++.+++...+...   .   +....++.|+||
T Consensus       239 ~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~  318 (368)
T cd06810         239 NDPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHPITPLKAPGPDEPLVPATLAGP  318 (368)
T ss_pred             CCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEEECC
T ss_conf             47896899866445652436199999999975997189976643455662321688464286178888898669999755


Q ss_pred             CCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             33666455213566778879899996887022324347689988779999
Q gi|254780741|r  296 SCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       296 ~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
                      ||+++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|++
T Consensus       319 ~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~s~~Fn~~~~pa~vli  368 (368)
T cd06810         319 LCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEYLV  368 (368)
T ss_pred             CCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf             88868799568857889999999776947324766177889999978979


No 10 
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00  E-value=0  Score=574.65  Aligned_cols=341  Identities=18%  Similarity=0.211  Sum_probs=289.7

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|+++|+.++.. .++++||+||||++.|+++|++.|+|+||+|++|++++++ ||++++|+|+ |.
T Consensus         6 GTP~yv~d~~~i~~~~~~l~~alp~-~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~   84 (382)
T cd06839           6 GTPFYVYDRDRVRERYAALRAALPP-AIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKILFAGPG   84 (382)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             9988998799999999999985899-975999970489999999999749909998999999999859995310761687


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---
Q ss_conf             7803478861388-68985672059999998612345--61489963577443101245578643574278888743---
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE---  154 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~---  154 (367)
                      |++++|++|++.+ ..|++||++||+++.+++++.+.  +|+|||||+++..+.. ..++++.||||++.+++.+..   
T Consensus        85 K~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~-~~~~g~~skFGi~~~~~~~~~~~~  163 (382)
T cd06839          85 KSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSG-MKMGGGPSQFGIDVEELPAVLARI  163 (382)
T ss_pred             CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             8889999999839957643867999999999986399746999981588778776-144788544589999999999999


Q ss_pred             ----HCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHH
Q ss_conf             ----14960665305656661478----999999999898650887508753377666445----568078999999875
Q gi|254780741|r  155 ----IKNVNGLMFHNNCENKSFLC----FSAMLKNIEKEFGHFITQIEWISLGGGIHFTDK----DYPVKDFCQRLKEFS  222 (367)
Q Consensus       155 ----~~~i~Gih~H~gs~~~~~~~----~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~~i~~~~  222 (367)
                          ..++.|||||+|||+.+.+.    |+++++.+.++.++++.++++|||||||+++|.    ..+++++++.+++..
T Consensus       164 ~~~~~l~~~Glh~H~GS~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~y~~~~~~~d~~~~~~~i~~~~  243 (382)
T cd06839         164 AALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGETPLDLEALGAALAALL  243 (382)
T ss_pred             HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             84689837888983577778979999999999999999898659885177505873767889899989999999999999


Q ss_pred             HHC-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCC-----CCCC-C---CCCCC
Q ss_conf             421-----65045300220145741888788786304-43334333356565664001345-----5300-0---24786
Q gi|254780741|r  223 EKY-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQE-----SATI-Y---PNTGP  287 (367)
Q Consensus       223 ~~~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~-----~~~~-~---~~~~~  287 (367)
                      +++     +++|++|||||+|++||+||++|+++|++ +++|+++|+|+++++++.+....     ++.. .   .....
T Consensus       244 ~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  323 (382)
T cd06839         244 AELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQVLRRNYPLAILNRMGGEER  323 (382)
T ss_pred             HHHHHCCCCCEEEEECCCEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCCCHHHCCHHHHHCCCCCEEECCCCCCCCE
T ss_conf             98642058968999135003215717999999998359957999907533441232232565314760782478888981


Q ss_pred             EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEE
Q ss_conf             45998623336664552135667788798999968870223243-47689988779999
Q gi|254780741|r  288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVK  345 (367)
Q Consensus       288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~  345 (367)
                      ++++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|+ ++||++|+|++|++
T Consensus       324 ~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~PaeVlV  382 (382)
T cd06839         324 ETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVLV  382 (382)
T ss_pred             EEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf             69999898888877987054678899999999959866177750301369999888879


No 11 
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00  E-value=0  Score=567.69  Aligned_cols=337  Identities=17%  Similarity=0.195  Sum_probs=296.0

Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-C--CCCCCCEEECC-
Q ss_conf             8568977999999999999985336986999541059999999998518748980799998987-3--68801088537-
Q gi|254780741|r    4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-E--KFGGETHAYNV-   79 (367)
Q Consensus         4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~--g~~~~~i~~~~-   79 (367)
                      +||||||++.|++|++++++++  +..+++||+||||++.||++|.+.|+|+||+|++|+++++ .  |+++++|+|++ 
T Consensus        12 gP~yVyd~~~i~~~~~~~~~~~--~~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Iv~~gp   89 (368)
T cd06840          12 GPCYVYDLETVRARARQVSALK--AVDSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDLDPRRVLFTPN   89 (368)
T ss_pred             CCEEEEEHHHHHHHHHHHHHCC--CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCHHHEEECCC
T ss_conf             9889987999999999997257--87818999704899999999998199869989999999998646998688685678


Q ss_pred             CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf             77803478861388689856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r   80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------  153 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------  153 (367)
                      .|++++++.|++.|..|++||++||+++.++++.  .+|+|||||+.+.+.+..+++++..||||++.+++.+.      
T Consensus        90 ~K~~~~l~~A~~~gv~i~~Ds~~el~~i~~~~~~--~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~e~~~~l~~~~~  167 (368)
T cd06840          90 FAARSEYEQALELGVNVTVDNLHPLREWPELFRG--REVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEARDLAKK  167 (368)
T ss_pred             CCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCC--CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             8999999999985995998889999999875258--80899982686876666420588602479987889999999985


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHC-CCE
Q ss_conf             314960665305656661478999999999898650887508753377666445----568078999999875421-650
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDK----DYPVKDFCQRLKEFSEKY-SVQ  228 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~~i~~~~~~~-~~~  228 (367)
                      ...++.|||||+|||+.+.+.|++.++.+.++.++++ ++++|||||||++++.    ..+++.+.+.+.++..++ +++
T Consensus       168 ~~l~~~GlhfH~GS~~~~~~~~~~~~~~~~~~~~~~~-~~~~ldiGGGf~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~  246 (368)
T cd06840         168 AGIIVIGLHAHSGSGVEDTDHWARHGDYLASLARHFP-AVRILNVGGGLGIPEAPGGRPIDLDALDAALAAAKAAHPQYQ  246 (368)
T ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             7993899998678777898999999999999997365-523476447657478888886489999999999986489978


Q ss_pred             EEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEECCCCCCCCEE
Q ss_conf             45300220145741888788786304-43334333356565664001345530002----47864599862333666455
Q gi|254780741|r  229 IYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVCGRSCLAGDIF  303 (367)
Q Consensus       229 l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~G~~C~~~D~l  303 (367)
                      ||+||||+||++||+++|+|+++|++ +.+|+++|+|++++++|.++..+++....    ......++|+||||+++|+|
T Consensus       247 l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GptC~~~D~l  326 (368)
T cd06840         247 LWMEPGRFIVAESGVLLARVTQIKHKDGVRFVGLETGMNSLIRPALYGAYHEIVNLSRLDEPPAGNADVVGPICESGDVL  326 (368)
T ss_pred             EEECCCHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCEE
T ss_conf             99814701322751799999999863883289988763455676770655502534778888854899983796722298


Q ss_pred             EECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             213566778879899996887022324347689988779999
Q gi|254780741|r  304 GEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       304 ~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
                      +++..+|++++||+|+|.++|||+++|+++||++|+|++|++
T Consensus       327 ~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~fN~~p~p~~v~v  368 (368)
T cd06840         327 GRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVVL  368 (368)
T ss_pred             CCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf             946317889999999776826112576487789999877879


No 12 
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00  E-value=0  Score=564.82  Aligned_cols=344  Identities=18%  Similarity=0.242  Sum_probs=292.5

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C
Q ss_conf             8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~   79 (367)
                      ++||++|||++.|++|+++|+.+|. .+++++||+||||+|.||++|++.|+|+||+|.+|+++|++ ||++++|+|+ |
T Consensus         1 ~~~~~~vyD~~~i~~~~~~~~~afp-~~~~~~YAvKaN~~p~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp   79 (379)
T cd06836           1 VHPAVGLYDLDGFRALVARLTAAFP-APVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSP   79 (379)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf             9985899629999999999998589-986189998338999999999984997897399999999985999899898899


Q ss_pred             CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-----H
Q ss_conf             778034788613886898567205999999861234---56148996357744310124557864357427888-----8
Q gi|254780741|r   80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH---KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK-----I  151 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~---~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~-----~  151 (367)
                      .|+++||+.|++.|..|++||++||++|.+++++.+   .+|+|||||+...+.++...++...||||++.++.     .
T Consensus        80 ~K~~~~l~~A~~~Gv~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~  159 (379)
T cd06836          80 AKTRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEII  159 (379)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             89999999999739920348989999999999862997525899971687766754344689989858881477899999


Q ss_pred             HHH--HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----C-CCCEEEEECCCCCCCCCC----CCCHHHHHHHHH
Q ss_conf             743--14960665305656661478999999999898650----8-875087533776664455----680789999998
Q gi|254780741|r  152 ESE--IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----I-TQIEWISLGGGIHFTDKD----YPVKDFCQRLKE  220 (367)
Q Consensus       152 ~~~--~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~-~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~  220 (367)
                      ++.  ..++.|||||+|||+.+.+.|.+.+..+.+++.++    + .++++|||||||+++|..    .+++++++.+++
T Consensus       160 ~~~~~~~~l~GlhfHvGSq~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~  239 (379)
T cd06836         160 DAFARRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKA  239 (379)
T ss_pred             HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99826797006898778888898999999999999999998860877632650378745467888889899999999999


Q ss_pred             HHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCC---CC-----C-CCCC
Q ss_conf             75421---65045300220145741888788786304-43334333356565664001345530---00-----2-4786
Q gi|254780741|r  221 FSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESAT---IY-----P-NTGP  287 (367)
Q Consensus       221 ~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~---~~-----~-~~~~  287 (367)
                      ..+++   .++||+||||+|+++||+++++|+++|++ +++|+++|+|++.++++.+....++.   ..     + ....
T Consensus       240 ~l~~~f~~~~~li~EPGR~lva~ag~ll~~V~~vK~~~~~~~~i~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
T cd06836         240 AVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPKTGPE  319 (379)
T ss_pred             HHHHHCCCCCEEEECCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE
T ss_conf             99975166856886055323046159999999999739868999951665553100243337446784067778678983


Q ss_pred             EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf             45998623336664552135667788798999968870223243476899887799996
Q gi|254780741|r  288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKN  346 (367)
Q Consensus       288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~  346 (367)
                      .+++|+||||+++|+|+++..+|++++||+|+|.++|||+++|+++||++|+|+||.++
T Consensus       320 ~~~~v~Gp~C~~~D~l~~~~~lP~l~~GD~l~i~~~GAY~~s~~s~fN~~prPav~~v~  378 (379)
T cd06836         320 VVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR  378 (379)
T ss_pred             EEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE
T ss_conf             49999866878587986364888899999999879770506561888799888289972


No 13 
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00  E-value=0  Score=558.06  Aligned_cols=338  Identities=20%  Similarity=0.304  Sum_probs=287.5

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC
Q ss_conf             88856897799999999999998533--6986999541059999999998518748980799998987-36880108853
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~   78 (367)
                      .+|||||||++.|++|+++|+++++.  ++++++||+||||++.+++++.+.|+|+||+|++|+++++ .|+++++|+|+
T Consensus         5 ~gTP~yv~d~~~l~~n~~~l~~~~~~~~p~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~g~~~~~Ii~~   84 (379)
T cd06841           5 YGSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRIIFN   84 (379)
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCEEEEC
T ss_conf             09988998699999999999999876089829999962175899999999839985998999999999859993229988


Q ss_pred             -CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf             -77780347886138868985672059999998612345--6148996357744310124557864357427888874--
Q gi|254780741|r   79 -VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES--  153 (367)
Q Consensus        79 -~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~--  153 (367)
                       |.|+++||+.|++.+..|++||++||+++.+++++.+.  +|+|||||..+         +...||||++.+++.+.  
T Consensus        85 gp~K~~~~i~~a~~~g~~i~vDs~~El~~l~~~a~~~~~~~~i~lRvn~~~~---------~~~~skFG~~~~~~~~~l~  155 (379)
T cd06841          85 GPYKSKEELEKALEEGALINIDSFDELERILEIAKELGRVAKVGIRLNMNYG---------NNVWSRFGFDIEENGEALA  155 (379)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCCCCCCCCHHHHHHHHH
T ss_conf             9989879999999859930448889999999999864997479999658888---------8864346999899999999


Q ss_pred             --------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCC----------CCCCHHH
Q ss_conf             --------314960665305656661478999999999898650-887508753377666445----------5680789
Q gi|254780741|r  154 --------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF-ITQIEWISLGGGIHFTDK----------DYPVKDF  214 (367)
Q Consensus       154 --------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~-~~~l~~idiGGG~~~~~~----------~~~~~~~  214 (367)
                              ...++.|||||+|||+.+.+.|.++++.+.+++.+. +.++++|||||||++++.          ..+++++
T Consensus       156 ~~~~~~~~~~l~~~GlhfHvGS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~idiGGGf~~~~~~~~~~~~~~~~~~~~~~  235 (379)
T cd06841         156 ALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRLFGLELEYLDLGGGFPAKTPLSLAYPQEDTVPDPEDY  235 (379)
T ss_pred             HHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             99987545897299999888987589899999999999999996199960998078757677765456788899999999


Q ss_pred             HHHHHHHHHHC------CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf             99999875421------65045300220145741888788786304-43334333356565664001345530002---4
Q gi|254780741|r  215 CQRLKEFSEKY------SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---N  284 (367)
Q Consensus       215 ~~~i~~~~~~~------~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~  284 (367)
                      ++.+.+..+++      +++|++|||||||++||+++++|+++|+. +++|+++|+|+++..++.++.++......   +
T Consensus       236 ~~~i~~~l~~~~~~~~~~~~li~EPGR~lv~~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~  315 (379)
T cd06841         236 AEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTIFWYHHPILVLRPGKED  315 (379)
T ss_pred             HHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCCCCCCCCHHHCCCCEEEECCCCCC
T ss_conf             99999999985510278866998167111114157999999999609927999826645771746569877955788888


Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf             78645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG  349 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g  349 (367)
                      ....++.|+||||+++|+|+++..+|++++||+|+|.|+||||++|+++|| +|+|++|++++||
T Consensus       316 ~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~f~-~prPa~vlv~~~g  379 (379)
T cd06841         316 PTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQFI-RPRPAVYLIDNNG  379 (379)
T ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCC-CCCCCEEEEECCC
T ss_conf             983089998878663569903513789999999978783754574618788-8778299993989


No 14 
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00  E-value=0  Score=555.72  Aligned_cols=333  Identities=19%  Similarity=0.236  Sum_probs=277.4

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC
Q ss_conf             88568977999999999999985336986999541059999999998518748980799998987-36880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|++++++++  ++++++||+||||++.|++++++.|+|+||+|++|+++|+ +|+++++|+|+ |.
T Consensus         1 ~TP~yvyd~~~i~~~~~~l~~af--p~~~i~YA~KaN~~~~vl~~l~~~G~g~dv~S~~El~~al~~G~~~~~Iif~gp~   78 (362)
T cd00622           1 ETPFLVVDLGDVVRKYRRWKKAL--PRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPC   78 (362)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             99889945999999999999868--9987999966589899999999739919982999999999849987895845887


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf             7803478861388-6898567205999999861234561489963577443101245578643574278888743-----
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-----  154 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-----  154 (367)
                      |+++||+.|++.+ ..|++||++||++|.+++++  .+|+|||||+.+...++      ..+|||++.+++.+..     
T Consensus        79 K~~~el~~a~~~gv~~i~vDS~~EL~~i~~~~~~--~~i~lRv~~~~~~~~~~------~~~KFGi~~~~~~~~l~~~~~  150 (362)
T cd00622          79 KSISDIRYAAELGVRLFTFDSEDELEKIAKHAPG--AKLLLRIATDDSGALCP------LSRKFGADPEEARELLRRAKE  150 (362)
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC--CCEEEEECCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHH
T ss_conf             8879999999749966772789999999986777--82699986699987335------777579999999999999986


Q ss_pred             -HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHC---
Q ss_conf             -14960665305656661478999999999898---650887508753377666445--568078999999875421---
Q gi|254780741|r  155 -IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDK--DYPVKDFCQRLKEFSEKY---  225 (367)
Q Consensus       155 -~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~--~~~~~~~~~~i~~~~~~~---  225 (367)
                       ..++.|||||+|||+.+.+.|.++++.+.+++   .+++.++++||+|||||+++.  +.+++++++.+++..+++   
T Consensus       151 ~~l~~~GlH~H~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~  230 (362)
T cd00622         151 LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPD  230 (362)
T ss_pred             CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             29956889987687768979999999999999999997599976798379836788889999899999999999986486


Q ss_pred             -CCEEEEEHHHHCCCCCEEEEEEEEEEECCC----CCCCCCCCCCCCCCCCCCCC-CCCCCC-C----CCCCCEEEEEEC
Q ss_conf             -650453002201457418887887863044----33343333565656640013-455300-0----247864599862
Q gi|254780741|r  226 -SVQIYLEPGEAIVTNTTTLNTTVLDISENI----KNLVIVDSSVEAHVPDYLLY-QESATI-Y----PNTGPYTAMVCG  294 (367)
Q Consensus       226 -~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~----~~~v~vd~g~~~~~~~~~~~-~~~~~~-~----~~~~~~~~~v~G  294 (367)
                       +++||+||||+||++||+++|+|+++|+.+    .+|+++|+|+++.+.+..+. .+++.. .    ..+...+++|+|
T Consensus       231 ~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G  310 (362)
T cd00622         231 EGVRIIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGGRDGELYPSSLWG  310 (362)
T ss_pred             CCCEEEECCHHHHCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEC
T ss_conf             79779985604520140799999999986078872699998478751154676437767168105888789801899984


Q ss_pred             CCCCCCCEEEECCCCC-CCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             3336664552135667-78879899996887022324347689988779999
Q gi|254780741|r  295 RSCLAGDIFGEFHFEK-PVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       295 ~~C~~~D~l~~~~~~~-~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
                      |+|+++|+|+++..+| .+++||+|+|.|||||+++|+++||++|+|++|++
T Consensus       311 ~~C~~~D~l~~~~~lP~~l~~GD~l~i~~~GAY~~smss~fN~~p~p~~V~v  362 (362)
T cd00622         311 PTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIVYV  362 (362)
T ss_pred             CCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEC
T ss_conf             4888886983566578889999999995987051756287789899948969


No 15 
>TIGR01047 nspC carboxynorspermidine decarboxylase; InterPro: IPR005730    Carboxynorspermidine synthase, mediates the nicotinamide-nucleotide-linked reduction of the Schiff base H2N(CH2)3N = CHCH2CH(NH2)COOH. This is formed from L-aspartic beta-semialdehyde (ASA) and 1,3-diaminopropane (DAP) and is reduced to carboxynorspermidine [H2N(CH2)3NH(CH2)2CH(NH2)COOH], an intermediate in the novel pathway for norspermidine biosynthesis shown in Vibrio alginolyticus.; GO: 0016830 carbon-carbon lyase activity, 0045312 nor-spermidine biosynthetic process.
Probab=100.00  E-value=0  Score=550.51  Aligned_cols=365  Identities=39%  Similarity=0.723  Sum_probs=348.9

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEECHHHHHHHHCCCC-----CCCE
Q ss_conf             88856897799999999999998533698699954105999999999851-87489807999989873688-----0108
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQY-MDGTTSSSLYEVMLGHEKFG-----GETH   75 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~-g~g~dv~S~~E~~la~~g~~-----~~~i   75 (367)
                      |+||+||+|+++|++|+.-++...+.+|+++.-|.|..+.+.+.++|+++ ..|+.++|++|++||.+.|+     ++.+
T Consensus         1 i~tP~fvLeE~~L~~Nl~i~~~v~q~SG~kv~LALKGFa~w~~F~ilr~yGL~G~taSgL~EAkLA~E~fgGreshkE~H   80 (403)
T TIGR01047         1 IPTPAFVLEEEKLRKNLEILESVQQQSGAKVLLALKGFAFWGVFPILREYGLKGATASGLWEAKLAKEEFGGRESHKEVH   80 (403)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf             99984021578999999999986430872785311003232100102420477324267678863223138602676668


Q ss_pred             EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHH--HCC-----C---CCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             853777803478861388689856720599999986--123-----4---561489963577443101245578643574
Q gi|254780741|r   76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKA--QKL-----H---KKIGLRINPSVSYSKFILADPNRPFSRLGE  145 (367)
Q Consensus        76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a--~~~-----~---~~I~lRinP~~~~~~~~~~~~~~~~skfG~  145 (367)
                      +|+|+.+++|+.+++.....|+++|+.|++++.+..  ++.     +   .++||||||.+|....+++||+.++||+|+
T Consensus        81 vYsPay~e~d~~~I~~La~~i~FNS~~Q~~~yr~~~~~K~~qlenlG~~~~k~GLRINPeyS~v~~dLYNPc~~~SRLGv  160 (403)
T TIGR01047        81 VYSPAYKEEDLPEIIPLADHIIFNSLAQWARYREKVEDKNSQLENLGLREVKLGLRINPEYSEVETDLYNPCGKFSRLGV  160 (403)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCCC
T ss_conf             71588886458889877413341037899999999999999888559750224123467446566132087868754664


Q ss_pred             CHHHHHH----HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             2788887----431496066530565666147899999999989865088750875337766644556807899999987
Q gi|254780741|r  146 KCKDKIE----SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEF  221 (367)
Q Consensus       146 ~~~~~~~----~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~  221 (367)
                      +..++.+    .....|.|+|||..|.++|.+++.++|+.+.+.|.+|.++++|+|+|||+++|.++||++.+++.+|+|
T Consensus       161 ~a~~f~~Gvke~~l~gI~Gl~FH~~CEn~d~dAL~~~L~~~E~~FG~yL~~m~WVNfGGGH~~T~~GYDv~~LIa~~K~F  240 (403)
T TIGR01047       161 QAKEFEEGVKESLLDGIEGLHFHTLCENKDADALERTLEVIEKKFGEYLPQMEWVNFGGGHLITKKGYDVEKLIAVIKAF  240 (403)
T ss_pred             CHHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCCCCCHHHHHHHHHHH
T ss_conf             15776165221467754411000134456747899999999876421000323031388766457888889999998666


Q ss_pred             HHHCC-CEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------
Q ss_conf             54216-5045300220145741888788786304-43334333356565664001345530002----------------
Q gi|254780741|r  222 SEKYS-VQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----------------  283 (367)
Q Consensus       222 ~~~~~-~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----------------  283 (367)
                      .++|. ++|++|||.||.=.+|.||++|+|+-+| +.+.++||+|+..||||.+.|+|++.+..                
T Consensus       241 ~erh~~v~viLEPGeAigWqTG~Lv~sV~DiveNP~~~~AiLD~S~~AHmPD~LemPYrp~vl~A~~~~~~e~~e~~k~~  320 (403)
T TIGR01047       241 KERHGNVQVILEPGEAIGWQTGFLVASVVDIVENPEKKIAILDVSFEAHMPDTLEMPYRPSVLGASVPADEELEEVEKDE  320 (403)
T ss_pred             HHCCCCEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf             51178538997158212211177579999886489966863421200578641016887400225667711357762246


Q ss_pred             CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHH
Q ss_conf             47864599862333666455213566778879899996887022324347689988779999679909999738989998
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYY  363 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~  363 (367)
                      ++++..|.++|+||.+||++|.+.++.+|++||.|+|.|.=.|||+-.+.|||.++|.+.+++.+|+++++|.++|+||-
T Consensus       321 ~~g~~~Y~lGG~tCLAGD~~G~y~Fd~pLkvGdk~vf~D~~HYTmVK~t~FNGv~~P~~~~L~~~G~~~~~~~FgYEDyk  400 (403)
T TIGR01047       321 KEGEFSYVLGGSTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKTTTFNGVKLPSIGCLRAKGEFQLIKTFGYEDYK  400 (403)
T ss_pred             CCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHCCCCCEEEHHHCCCHHHH
T ss_conf             77851478057841001511002568877634647884278754512262788447334431037876762007755640


Q ss_pred             HHC
Q ss_conf             742
Q gi|254780741|r  364 NNL  366 (367)
Q Consensus       364 ~~~  366 (367)
                      +|+
T Consensus       401 ~rl  403 (403)
T TIGR01047       401 NRL  403 (403)
T ss_pred             CCC
T ss_conf             259


No 16 
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00  E-value=0  Score=526.12  Aligned_cols=331  Identities=18%  Similarity=0.205  Sum_probs=253.6

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-
Q ss_conf             88568977999999999999985336--986999541059999999998518748980799998987-36880108853-
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNA--GVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-   78 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~--~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-   78 (367)
                      +||+||||+++|++|+++++.++...  +++++||+|||+++.||++|++.|+|+||+|++|+++|+ +|+++++|+|+ 
T Consensus         9 GTP~yVyd~~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~g~Dv~S~gEl~~al~aG~~~~~Iv~~g   88 (423)
T cd06842           9 GSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRIVATG   88 (423)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECC
T ss_conf             99979976999999999999998755998269998610689999999998499289869999999998599879989738


Q ss_pred             CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf             777803478861388689856720599999986123---4561489963577443101245578643574278888743-
Q gi|254780741|r   79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKL---HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-  154 (367)
Q Consensus        79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~---~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-  154 (367)
                      |.|+++||+.|++.+..||+||++||++|.+++++.   ..+|+|||||.          ++.+.||||++.+++.+.. 
T Consensus        89 ~~Ks~~ei~~Ai~~gv~i~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~----------~~~~~sKFGi~~~~~~~~l~  158 (423)
T cd06842          89 PAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSPF----------PASLPSRFGMPAAEVRTALE  158 (423)
T ss_pred             CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCC----------CCCCCCCCCCCHHHHHHHHH
T ss_conf             98998999999985998997899999999999876079962799986789----------99999999899999999999


Q ss_pred             -------HCCCEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CH-----------
Q ss_conf             -------149606653056566614--78999999999898650887508753377666445568--07-----------
Q gi|254780741|r  155 -------IKNVNGLMFHNNCENKSF--LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYP--VK-----------  212 (367)
Q Consensus       155 -------~~~i~Gih~H~gs~~~~~--~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~--~~-----------  212 (367)
                             ..++.|||||+||+....  ..++++++.+ +.+.+.+.++++|||||||+++|.+.+  ++           
T Consensus       159 ~~~~~~~~l~~~GlH~HiGs~~~~~~~~a~~~~~~~~-~~~~~~g~~l~~idiGGGfgv~Y~~~~~~~~~~~~~~~~~~~  237 (423)
T cd06842         159 RLAQLRERVRLVGFHFHLDGYSAAQRVAALQECLPLI-DRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALY  237 (423)
T ss_pred             HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             9996399983689888648877278999999999999-999952999778971899776776631023443333101110


Q ss_pred             -------------------------------HHHHH-----------HHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEE
Q ss_conf             -------------------------------89999-----------998754216504530022014574188878878
Q gi|254780741|r  213 -------------------------------DFCQR-----------LKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLD  250 (367)
Q Consensus       213 -------------------------------~~~~~-----------i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~  250 (367)
                                                     ++.+.           +++.....+++|++||||+||++||++||+|.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~iEPGR~lva~aG~llt~V~~  317 (423)
T cd06842         238 GYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPGRALLDQCGLTVARVAF  317 (423)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEEEE
T ss_conf             23543211122334566533343456752778999987412222245777642568559976655652255249999999


Q ss_pred             EECC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC------CCCCCCCEEEEEECCCCCCCCEEEEC-CCCCC-CCCCCEEE
Q ss_conf             6304-4333-433335656566400-1345530------00247864599862333666455213-56677-88798999
Q gi|254780741|r  251 ISEN-IKNL-VIVDSSVEAHVPDYL-LYQESAT------IYPNTGPYTAMVCGRSCLAGDIFGEF-HFEKP-VKIGDRIS  319 (367)
Q Consensus       251 ~K~~-~~~~-v~vd~g~~~~~~~~~-~~~~~~~------~~~~~~~~~~~v~G~~C~~~D~l~~~-~~~~~-l~~GD~l~  319 (367)
                      +|++ +.++ +.+|+++. .+++.. .+...+.      ........++.|+||+|+++|+|++. ..+|+ +++||+|+
T Consensus       318 vK~~~~~~~~v~~~g~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~~lP~~~~~GD~l~  396 (423)
T cd06842         318 VKQLGDGNHLIGLEGNSF-SACEFSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKIPFPRLPKPGDLLV  396 (423)
T ss_pred             EEECCCCCEEEEECCCCC-CCCHHHCHHCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf             976599858999668875-4101211000474574367777788853899998166798158605566756799999999


Q ss_pred             EECCCCHHH-HHCCCCCCCCCCEEEEE
Q ss_conf             968870223-24347689988779999
Q gi|254780741|r  320 FEDVAGYNI-NRKNWFNGINMPTIAVK  345 (367)
Q Consensus       320 i~~~GAY~~-~~~~~Fn~~~~P~~v~~  345 (367)
                      |.++|||+| +|+|+||++|+|++|++
T Consensus       397 i~~~GAY~~~~~as~fN~~P~P~~V~V  423 (423)
T cd06842         397 FPNTAGYQMDFLESRFHRHPLPRRVVV  423 (423)
T ss_pred             ECCCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf             938630268422123049999988769


No 17 
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00  E-value=0  Score=522.03  Aligned_cols=342  Identities=16%  Similarity=0.159  Sum_probs=271.9

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCHHHHHHHHHHCC----EEEEECHHHHHHHH-CC
Q ss_conf             88568977999999999999985336--------9869995410599999999985187----48980799998987-36
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNA--------GVKLLLALKCFAAWGMFDTLNQYMD----GTTSSSLYEVMLGH-EK   69 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~--------~~~i~yA~KaN~~~~il~~l~~~g~----g~dv~S~~E~~la~-~g   69 (367)
                      +||+||||++.||+|+++++.+|...        +++++||+|||+++.|++.+.++|.    |+||+|.+|+.+|+ +|
T Consensus         4 GTPLyV~d~~~ir~~~~~~~~aF~~~~~~~~y~~~~~~~YAvKAN~n~~vl~~l~~~G~~~~~G~DvvS~gEl~~al~ag   83 (409)
T cd06830           4 GLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALALL   83 (409)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCC
T ss_conf             99799970999999999999999999997287876289998720680999999997397558836896899999999769


Q ss_pred             CCCCCEEE-CCCCCHHHHHHHHCCC-----CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             88010885-3777803478861388-----68985672059999998612345--6148996357744310124557864
Q gi|254780741|r   70 FGGETHAY-NVAYKDCEIDAVLSNC-----DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFS  141 (367)
Q Consensus        70 ~~~~~i~~-~~~~~~~el~~a~~~~-----~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~s  141 (367)
                      +++++++| |+.|++++|+.|+..+     .+|++||++||++|.+++++.+.  +|+|||||++.+.++ ...+++..|
T Consensus        84 ~~p~~ii~~~~~K~~~~i~~a~~~~~~~~~v~iviDs~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~-~~~t~g~~s  162 (409)
T cd06830          84 KTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGK-WQESGGDRS  162 (409)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCCCCCCCC
T ss_conf             9999699949989999999999847567653664599999999999999709995078998536688876-411378631


Q ss_pred             CCCCCHHHHHHHH-------H-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCC--
Q ss_conf             3574278888743-------1-4960665305656661478999999999898---6508875087533776664455--
Q gi|254780741|r  142 RLGEKCKDKIESE-------I-KNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKD--  208 (367)
Q Consensus       142 kfG~~~~~~~~~~-------~-~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~--  208 (367)
                      |||++.+++.+..       . ..+.|||||+|||+.+.+.|.++++.+.+++   .+.+..+++||+||||+++|.+  
T Consensus       163 KFGi~~~~~~~~~~~~~~~~~~~~l~glH~HIGSQi~d~~~~~~a~~~~~~~~~~l~~~g~~l~~ldlGGGfgi~Y~~~~  242 (409)
T cd06830         163 KFGLTASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDYDGSR  242 (409)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf             35999999999999998579977556899852789888899999999999999999984899526750675554568767


Q ss_pred             --------CCCHHHHHHH----HHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             --------6807899999----98754216---50453002201457418887887863044333433335656566400
Q gi|254780741|r  209 --------YPVKDFCQRL----KEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYL  273 (367)
Q Consensus       209 --------~~~~~~~~~i----~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~  273 (367)
                              ++++++++.+    ++.+++++   ++||+||||||||+||++|++|..+|+..+++.+.++.++.+.++++
T Consensus       243 ~~~~~~~~~dl~~~a~~i~~~~~~~~~~~~~~~p~li~EPGR~iVa~AGvll~~V~~vK~~~~~~~i~~~~~~~l~d~~~  322 (409)
T cd06830         243 SSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLADWYFCNFSLFQSLPDSWA  322 (409)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCCHHH
T ss_conf             78765410229999999999999999972999975998147321010028999989997515268750323355655345


Q ss_pred             CCCCCCCCCC----CCCCEEEEEECCCCCCCCEEEEC---------CCCCCCCC--CCEEEEECCCCHHHHHCCCCCCCC
Q ss_conf             1345530002----47864599862333666455213---------56677887--989999688702232434768998
Q gi|254780741|r  274 LYQESATIYP----NTGPYTAMVCGRSCLAGDIFGEF---------HFEKPVKI--GDRISFEDVAGYNINRKNWFNGIN  338 (367)
Q Consensus       274 ~~~~~~~~~~----~~~~~~~~v~G~~C~~~D~l~~~---------~~~~~l~~--GD~l~i~~~GAY~~~~~~~Fn~~~  338 (367)
                      +.++++.+.-    .+....++|+|++|+|+|+++++         ..+|+++.  ||+|+|.+||||+++|+||||+++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~v~G~~CES~d~~~~~~~~~~~~~~~~lp~~~~~egdlla~~~aGAYg~sMsSnYN~~g  402 (409)
T cd06830         323 IDQLFPIMPLHRLNEKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQEILGDLHNLFG  402 (409)
T ss_pred             HCCCCEEEECCCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCC
T ss_conf             05655266535577887057899853601498032205664322346677667899878999336702478766656899


Q ss_pred             CCEEEEE
Q ss_conf             8779999
Q gi|254780741|r  339 MPTIAVK  345 (367)
Q Consensus       339 ~P~~v~~  345 (367)
                      +|++|.+
T Consensus       403 ~~~~v~v  409 (409)
T cd06830         403 DTNAVHV  409 (409)
T ss_pred             CCCEEEC
T ss_conf             9887769


No 18 
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00  E-value=0  Score=516.30  Aligned_cols=335  Identities=16%  Similarity=0.224  Sum_probs=269.1

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||.+.|++|+++++++++  +++++||+||||++.||++|++.|+||||+|.+|+++|++ ||++++|+|+ |.
T Consensus        12 ~~~fyvyD~~~i~~~~~~~~~~lp--~v~~~YAvKaN~~~~il~~L~~~G~g~DvaS~gEl~~al~aG~~p~~Iif~gp~   89 (394)
T cd06831          12 KNAFFVGDLGKIVKKHSQWQTVMA--QIKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTNPC   89 (394)
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             998799589999999999998689--985787862499899999999749988986999999999869987997977999


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf             7803478861388-689856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------  153 (367)
                      |+++||+.|++.+ ..+++||++||++|.+..  ++.++.+||||....++      +...+|||++.+++.+.      
T Consensus        90 Kt~~ei~~A~~~GV~~~~~Ds~~EL~ki~r~~--~~~~v~lri~~~~~~~~------~~~~~KFG~~~~~~~~ll~~~~~  161 (394)
T cd06831          90 KQASQIKYAAKVGVNIMTCDNEIELKKIARNH--PNAKLLLHIATEDNIGG------EEMNMKFGTTLKNCRHLLECAKE  161 (394)
T ss_pred             CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHC--CCCCEEEEEECCCCCCC------CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999999998599778537689999999878--99960788734777777------75676545679999999999986


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC-----
Q ss_conf             31496066530565666147899999999---9898650887508753377666445568078999999875421-----
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNI---EKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY-----  225 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~---~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~-----  225 (367)
                      ...++.|||||+|||+.+.+.|.++++.+   .++..+++.++++|||||||+.  .+.+.+++...++...+.+     
T Consensus       162 ~~l~~~Glh~HvGSq~~~~~~~~~a~~~~~~v~dl~~~~g~~~~~lDiGGGf~~--~~~~~~~~~~~i~~~~~~~f~~~~  239 (394)
T cd06831         162 LDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTG--SEIQLEEVNHVIRPLLDVYFPEGS  239 (394)
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             498699985331577688499999999999999999971999748987899887--778979999999999998663468


Q ss_pred             CCEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC--------CCCCCCCCC----------CCCC----CC
Q ss_conf             6504530022014574188878878630443334333356565--------664001345----------5300----02
Q gi|254780741|r  226 SVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAH--------VPDYLLYQE----------SATI----YP  283 (367)
Q Consensus       226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~--------~~~~~~~~~----------~~~~----~~  283 (367)
                      ++++++|||||+|++||.++++|+++|..+.+..+++++.+..        +++.++...          .+.+    ..
T Consensus       240 ~~~li~EPGR~lva~ag~l~t~Vi~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~g~yg~~~~~~~~~~~~~~~~~~~~~~  319 (394)
T cd06831         240 GIQIIAEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLNTTPEVHKKYKE  319 (394)
T ss_pred             CCEEEECCCCEEEECCEEEEEEEEEEEEECCCEEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             97799507967865225899999988851462377632334666500114654000004667665323567332345567


Q ss_pred             CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf             478645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG  349 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g  349 (367)
                      ++...+++|+||+|+++|+|+++..+|++++||+|+|.++|||+++|+|+||++|+|+++++....
T Consensus       320 ~~~~~~~tv~Gp~C~s~Dvl~~~~~LP~l~~GD~L~i~~~GAY~~sm~s~fNg~~rPav~~~~~~~  385 (394)
T cd06831         320 DEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMSFS  385 (394)
T ss_pred             CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECHH
T ss_conf             897578588963867756989366889999999999848987840105788898998289997788


No 19 
>KOG0622 consensus
Probab=100.00  E-value=0  Score=432.04  Aligned_cols=348  Identities=20%  Similarity=0.275  Sum_probs=282.2

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEE-CCC
Q ss_conf             88568977999999999999985336986999541059999999998518748980799998987-3688010885-377
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAY-NVA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~-~~~   80 (367)
                      ..||||+|...|.++..+++..+  |.++.+||||||+.|.|++.|++.|+||+|+|..|++++. .|++|++|+| ||-
T Consensus        55 ~~aFfv~Dl~~I~Rkl~~w~~~L--prV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~riIyanpc  132 (448)
T KOG0622          55 KQAFFVADLGAIERKLEAWKKAL--PRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERIIYANPC  132 (448)
T ss_pred             CCCEEEECHHHHHHHHHHHHHHC--CCCCCCEEEEECCCHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             57337841899999999999865--4678761687379779999999708660103717999998669885666862787


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH---H---HH
Q ss_conf             7803478861388-689856720599999986123456148996357744310124557864357427888---8---74
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK---I---ES  153 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~---~---~~  153 (367)
                      |.-+.|+.|.+.| ...++||..||.++...  .++.++.|||+++.+.      .++....|||.+.++.   +   +.
T Consensus       133 K~~s~IkyAa~~gV~~~tfDne~el~kv~~~--hP~a~llLrIatdds~------a~~~l~~KFG~~~~~~~~lLd~ak~  204 (448)
T KOG0622         133 KQVSQIKYAAKHGVSVMTFDNEEELEKVAKS--HPNANLLLRIATDDST------ATCRLNLKFGCSLDNCRHLLDMAKE  204 (448)
T ss_pred             CCHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEECCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             5199999999759707862589999999974--9973389997368874------5555667568777899999999987


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHC----
Q ss_conf             314960665305656661478999999999898---650887508753377666445-568078999999875421----
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEKY----  225 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~~----  225 (367)
                      ...++.|+|||+||++.+++.|.+++..+..++   +++|..+.++||||||+..+. ...++++++.|+...+.|    
T Consensus       205 l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~~In~ald~~Fp~~  284 (448)
T KOG0622         205 LELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIADVINTALDLYFPSG  284 (448)
T ss_pred             CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             18658889987258878789999999999999999986186278861378888752301202638988889999747877


Q ss_pred             CCEEEEEHHHHCCCCCEEEEEEEEEEECCCC--------------CCCCCCC---CCCCCCCCCCCCCCCCCCCC----C
Q ss_conf             6504530022014574188878878630443--------------3343333---56565664001345530002----4
Q gi|254780741|r  226 SVQIYLEPGEAIVTNTTTLNTTVLDISENIK--------------NLVIVDS---SVEAHVPDYLLYQESATIYP----N  284 (367)
Q Consensus       226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~--------------~~v~vd~---g~~~~~~~~~~~~~~~~~~~----~  284 (367)
                      +++++.|||||+|+++.+|++.|+..|+.+.              .|.+.||   ++|+...+.  +++.+....    +
T Consensus       285 ~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~--~~~i~~~~~~~~e~  362 (448)
T KOG0622         285 GVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDH--QHPIPLVVKDPSEE  362 (448)
T ss_pred             CCEEEECCCHHEEECHHEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECHHHHCC--CCCCCCCCCCCCCC
T ss_conf             8238843752103020023455554222130014766334673179997363336612202134--47665456797223


Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE-CCHHHH
Q ss_conf             786459986233366645521356677887989999688702232434768998877999967990999973-898999
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE-FSYNDY  362 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~-e~~~d~  362 (367)
                      ++..+..||||+|++.|++.++..+|.+.+||||+|+|+||||++++|.||++++|.++....++.++.+|+ ++++|-
T Consensus       363 e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~~~y~~s~~~~e~~r~~~~~~~~  441 (448)
T KOG0622         363 EPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPKIYYVMSDGDWEKIRDAETFDDE  441 (448)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCHH
T ss_conf             6614530136776417788764148978746757785677600235543578888845898502428876265579815


No 20 
>pfam02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain. These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold.
Probab=100.00  E-value=0  Score=338.38  Aligned_cols=227  Identities=17%  Similarity=0.195  Sum_probs=191.9

Q ss_pred             EHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CCCCHHHHH
Q ss_conf             7999999999999985336986999541059999999998518748980799998987-36880108853-777803478
Q gi|254780741|r   10 DKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VAYKDCEID   87 (367)
Q Consensus        10 d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~~~~~el~   87 (367)
                      |++.|+++++.+.+++ .++++++||+||||++.||+++.+.|+|+||+|.+|+++|+ .|+++++|+|+ |.|+++|++
T Consensus         1 D~~~i~~~~~~~~~~~-~p~~~~~YAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~g~~~~~I~~~g~~k~~~~i~   79 (245)
T pfam02784         1 DLGRIIERAHALWQAF-LPRIQPFYAVKANSDPAVLRLLAELGLGFDCASKGELERVLAAGVPPERIIFANPCKSRSELR   79 (245)
T ss_pred             CHHHHHHHHHHHHHHH-CCCCEEEEEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEEECCCCCHHHHH
T ss_conf             9689999999999984-899779988501888999999998299299989999999998698957889814435468999


Q ss_pred             HHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH------HCCCEE
Q ss_conf             861388-6898567205999999861234561489963577443101245578643574278888743------149606
Q gi|254780741|r   88 AVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE------IKNVNG  160 (367)
Q Consensus        88 ~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~------~~~i~G  160 (367)
                      .+++.+ .+|++||++||+++.+++++  .+|++||||++..+.+....+|. .||||++.+++.+..      ..++.|
T Consensus        80 ~a~~~gv~~i~vDs~~el~~i~~~~~~--~~i~lRvnp~~~~~~~~~~~~g~-~sKFGi~~~~~~~~~~~~~~~~~~~~G  156 (245)
T pfam02784        80 YALEHGVVCVTVDNVEELEKLARLAPE--ARLLLRVKPDVDAHAHCYLSTGQ-DSKFGADLEEAEALLKAAKELGLNVVG  156 (245)
T ss_pred             HHHHHCCCCEEECCHHHHHHHHHHCCC--CCEEEEEEECCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             999827761442799999999985753--77899994067766554444688-777689999999999999867997547


Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHC-----CCEEEE
Q ss_conf             653056566614789999999998986---50887508753377666445-568078999999875421-----650453
Q gi|254780741|r  161 LMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEKY-----SVQIYL  231 (367)
Q Consensus       161 ih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~l~i  231 (367)
                      ||||+|||+.+.+.|.+.++.+.++++   +.+.++++|||||||+++|. +.+++++++.+++..+++     +++||+
T Consensus       157 lH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~  236 (245)
T pfam02784       157 VHFHVGSGCTDAEAFVKAARDARNVFDQGAELGFELKILDLGGGFGVDYTGAEDFEEYAEVINAALEEVFPHDPHPTIIA  236 (245)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             55653657899899999999999999999980998319985899588889999989999999999999845599808999


Q ss_pred             EHHHHCCCC
Q ss_conf             002201457
Q gi|254780741|r  232 EPGEAIVTN  240 (367)
Q Consensus       232 EPGR~lv~~  240 (367)
                      ||||||||+
T Consensus       237 EPGR~lvap  245 (245)
T pfam02784       237 EPGRYIVAP  245 (245)
T ss_pred             ECCCCCCCC
T ss_conf             578000286


No 21 
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00  E-value=1.1e-35  Score=254.88  Aligned_cols=364  Identities=16%  Similarity=0.176  Sum_probs=262.2

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH----C----CCEEEEEEECCCCHHHHHHHHHHC----CEEEEECHHHHHHHHCC
Q ss_conf             88856897799999999999998533----6----986999541059999999998518----74898079999898736
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN----A----GVKLLLALKCFAAWGMFDTLNQYM----DGTTSSSLYEVMLGHEK   69 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~----~----~~~i~yA~KaN~~~~il~~l~~~g----~g~dv~S~~E~~la~~g   69 (367)
                      +++|+.+-..+.|+++++++..+|..    .    .++-.|++|.|....|++.+.+.|    .|.|++|..|+.++++-
T Consensus        62 ~~~P~llRF~dIL~~ri~~l~~aF~~Ai~e~~Y~g~y~gVyPIKVNQ~r~VVeeI~~~G~~~~~GLEAGSKpEL~a~la~  141 (634)
T PRK05354         62 LRLPLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYQGVYPIKVNQQRHVVEEIVASGKPYNLGLEAGSKPELMAVLAL  141 (634)
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99977996469999999999999999999829888663042234365289999999727656555535868999999862


Q ss_pred             C--CCCCEEECCCCCHHHHHHHH---CC--CCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             8--80108853777803478861---38--868985672059999998612345--614899635774431012455786
Q gi|254780741|r   70 F--GGETHAYNVAYKDCEIDAVL---SN--CDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPF  140 (367)
Q Consensus        70 ~--~~~~i~~~~~~~~~el~~a~---~~--~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~  140 (367)
                      .  +...|+.||-|.++-++.|+   +.  ...|+++.++||+.+.+.+++.+.  .||+|+... +.+...+.++|+..
T Consensus       142 ~~~~~aliiCNGyKD~eyI~LAl~a~klG~~v~iViEk~~EL~~il~~a~~l~v~P~iGvR~kL~-s~gsGkW~~SgGd~  220 (634)
T PRK05354        142 ANDPGSLIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRARLA-SQGSGKWQSSGGEK  220 (634)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCCCCCCCCCCC
T ss_conf             37999559956827699999999999769966999746899999999999749998505799862-56576106778741


Q ss_pred             CCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCCC--
Q ss_conf             43574278888743--------1496066530565666147899999999989865---0887508753377666445--
Q gi|254780741|r  141 SRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH---FITQIEWISLGGGIHFTDK--  207 (367)
Q Consensus       141 skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~---~~~~l~~idiGGG~~~~~~--  207 (367)
                      ||||.+..++.+..        ...++-+|||+|||+.+....++++..+.+++.+   .|..++++|+|||+++.|.  
T Consensus       221 sKFGLs~~eil~~v~~Lk~~~~ld~L~LLHfHiGSQI~~I~~ik~av~Ea~r~Y~eL~~~Ga~i~ylDvGGGLgVDYdGs  300 (634)
T PRK05354        221 SKFGLSATEILEAVERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARIYVELRKLGAPIKYLDVGGGLGVDYDGT  300 (634)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf             21588899999999998865845324331132455553499999999999999999997589851785158626676776


Q ss_pred             --------CCCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCC----------CC--
Q ss_conf             --------568078999----9998754216---50453002201457418887887863044333----------43--
Q gi|254780741|r  208 --------DYPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIKNL----------VI--  260 (367)
Q Consensus       208 --------~~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~----------v~--  260 (367)
                              +|.+++||+    .+++.+++.+   +.|+.|.||+++|.+.+||+.|+++.......          ++  
T Consensus       301 ~s~~~~S~NYsl~EYa~dVV~~v~~~c~~~~vphP~IvtESGRAi~AhhsvLv~~Vl~~~~~~~~~~~~~~~~~~~ll~~  380 (634)
T PRK05354        301 RSQSDSSVNYSLQEYANDVVYTLKEICEEKGVPHPTIISESGRAITAHHAVLVFNVLGVERVEYEEPPAPAEDAPPLLQN  380 (634)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             65886676769999899999999999997599999178535610102445899861134568877889898776799999


Q ss_pred             -------C----------CC-------------CCCC-------------------------------------------
Q ss_conf             -------3----------33-------------5656-------------------------------------------
Q gi|254780741|r  261 -------V----------DS-------------SVEA-------------------------------------------  267 (367)
Q Consensus       261 -------v----------d~-------------g~~~-------------------------------------------  267 (367)
                             +          |+             |.-.                                           
T Consensus       381 l~~~~~~~~~~~~~E~y~Da~~~~~e~~~~F~~G~lsL~~RA~aE~l~~~i~~~i~~~~~~~~~~~~el~~L~~~Lad~Y  460 (634)
T PRK05354        381 LWETLQEIDRRNLQEIYHDAQQDLEEALSLFALGYLSLQERAWAEQLYWAICREIQKLLDPKNAHRPELDELQERLADKY  460 (634)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHE
T ss_conf             99999853778899999999999999999984788579999999999999999999975236789689999999876555


Q ss_pred             --------CCCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCE---EEE------CCCCCCCCCCC--EEEEECC
Q ss_conf             --------5664001-3455300----024786459986233366645---521------35667788798--9999688
Q gi|254780741|r  268 --------HVPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDI---FGE------FHFEKPVKIGD--RISFEDV  323 (367)
Q Consensus       268 --------~~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~---l~~------~~~~~~l~~GD--~l~i~~~  323 (367)
                              -+|+.|- .+..|++    ...++.....++--||+|.-.   +..      ...+++++.|.  +|.|.-+
T Consensus       461 ~~NFSvFQSlPD~WaIdQlFPImPihRL~E~Ptr~a~l~DiTCDSDGkI~~fi~~~~v~~tLpLH~~~~~e~YylG~FLv  540 (634)
T PRK05354        461 YVNFSLFQSLPDAWAIDQLFPVMPLHRLDEEPTRRAVLADITCDSDGKIDQFIDGQGIKTTLPLHPLDPGEPYYLGFFLV  540 (634)
T ss_pred             EEEEHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEH
T ss_conf             87325751473077752666422330258887754488620547888653300788874675699999999767987630


Q ss_pred             CCHHHHHCCCCCCCCCC--EEEEEECCCCEEEEE---ECCHHHHHHHC
Q ss_conf             70223243476899887--799996799099997---38989998742
Q gi|254780741|r  324 AGYNINRKNWFNGINMP--TIAVKNVDGTIKAIR---EFSYNDYYNNL  366 (367)
Q Consensus       324 GAY~~~~~~~Fn~~~~P--~~v~~~~~g~~~~~r---~e~~~d~~~~~  366 (367)
                      |||+-.|+..-|-+-.+  ..|.++++|.+.+.+   ..|.+|.++-+
T Consensus       541 GAYQEiLGdlHNLFGdt~~v~V~~~~~g~~~i~~~i~Gdtv~dVL~yv  588 (634)
T PRK05354        541 GAYQEILGDMHNLFGDTNAVHVRVDEDGGYEIEHVIEGDTVADVLEYV  588 (634)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHC
T ss_conf             076887600143079987799998699988998750688599999873


No 22 
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=100.00  E-value=2.1e-31  Score=226.54  Aligned_cols=362  Identities=17%  Similarity=0.163  Sum_probs=256.9

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH-------C-CCEEEEEEECCCCHHHHHHHHHHC----CEEEEECHHHHHHHHC-
Q ss_conf             88856897799999999999998533-------6-986999541059999999998518----7489807999989873-
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN-------A-GVKLLLALKCFAAWGMFDTLNQYM----DGTTSSSLYEVMLGHE-   68 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~-------~-~~~i~yA~KaN~~~~il~~l~~~g----~g~dv~S~~E~~la~~-   68 (367)
                      ++-|+.+-..+.|.++++.+..+|+.       + +++..|++|.|..+.+++.|...|    .|.|++|..|+..+++ 
T Consensus        78 ~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~  157 (652)
T COG1166          78 LRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAH  157 (652)
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             89856985269999999999999999999808898605898766554188999998636898776667887999999983


Q ss_pred             -CCCCCCEEECCCCCHHHHHHHH-----CCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             -6880108853777803478861-----38868985672059999998612345--614899635774431012455786
Q gi|254780741|r   69 -KFGGETHAYNVAYKDCEIDAVL-----SNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPF  140 (367)
Q Consensus        69 -g~~~~~i~~~~~~~~~el~~a~-----~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~  140 (367)
                       +-+...|+.|+=|..+-++.|+     .+...|+|+-++||+.+.+.|+..+.  ++|+|+--. +.+...+.++|+..
T Consensus       158 ~~~~~~~IvCNGyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~Vl~eA~~lgvkP~lGvR~RL~-sqGsGkW~~SgG~k  236 (652)
T COG1166         158 AGNPGSLIVCNGYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLA-SQGSGKWQSSGGEK  236 (652)
T ss_pred             CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEE-CCCCCCCCCCCCCH
T ss_conf             38999717845746099999999999827954999922679999999999739997633688862-35567500046831


Q ss_pred             CCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCC--
Q ss_conf             43574278888743--------149606653056566614789999999998986---50887508753377666445--
Q gi|254780741|r  141 SRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDK--  207 (367)
Q Consensus       141 skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~--  207 (367)
                      ||||.+..+++...        +..++-+|||.|||+.+...+++.+..+.+.+.   ++|-.++++|+|||+++.|+  
T Consensus       237 sKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klGa~i~~~dVGGGLgVDYdGt  316 (652)
T COG1166         237 SKFGLSATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLGANIKYFDVGGGLGVDYDGT  316 (652)
T ss_pred             HCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCC
T ss_conf             01488889999999998762657766787641000134569999999999999999998278860785168443321676


Q ss_pred             --------CCCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCC--CCCCCCC-------
Q ss_conf             --------568078999----9998754216---504530022014574188878878630443--3343333-------
Q gi|254780741|r  208 --------DYPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIK--NLVIVDS-------  263 (367)
Q Consensus       208 --------~~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~--~~v~vd~-------  263 (367)
                              +|.+.+|++    .++++++.++   +.|++|.||+|.|...+|++.|+++-....  .=...+.       
T Consensus       317 ~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~P~IisESGRaitAHhaVLI~~Vi~v~~~~~~~~p~~~~~~~~~~l~  396 (652)
T COG1166         317 RTQSDCSKNYGLNEYANDVVWALKDACEEKGLPHPTIISESGRAITAHHAVLIANVIGVERHEYNDAPLPDAPRNLPPLW  396 (652)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             44663233678899998999999999984599998078104423220422898630002457877788888843245899


Q ss_pred             --------CCC-----------------------C----C----------------------------------------
Q ss_conf             --------565-----------------------6----5----------------------------------------
Q gi|254780741|r  264 --------SVE-----------------------A----H----------------------------------------  268 (367)
Q Consensus       264 --------g~~-----------------------~----~----------------------------------------  268 (367)
                              +.+                       .    +                                        
T Consensus       397 ~~~~e~~~~i~~r~~~E~~hds~~~~~~~~~~f~~G~l~L~~Ra~aEqL~~aic~ki~~~~~~~~~~~r~~ldeLqe~la  476 (652)
T COG1166         397 RTLQELYESITARNLREWYHDSQDDLEDAHSLFNLGYLSLQERAWAEQLYLAICHKVQQLLRQKNRSHRPILDELQERLA  476 (652)
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             99999863457788999998767679999987503532288888799999999999999854530687678999999976


Q ss_pred             ------------CCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCEE---EE------CCCCCCCCCC--CEEEE
Q ss_conf             ------------664001-3455300----0247864599862333666455---21------3566778879--89999
Q gi|254780741|r  269 ------------VPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDIF---GE------FHFEKPVKIG--DRISF  320 (367)
Q Consensus       269 ------------~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~l---~~------~~~~~~l~~G--D~l~i  320 (367)
                                  +|+.|- .+-.|++    ...+......++--||+|--.+   .+      ..++++.++|  =+|.|
T Consensus       477 dky~vNfSlFQSlPD~W~IdQlFPI~Pl~rLdE~PtRravL~DiTCDSDG~Id~yid~~~i~s~Lplh~~~~~epy~lGf  556 (652)
T COG1166         477 DKYYVNFSLFQSLPDAWGIDQLFPILPLHRLDEEPTRRAVLLDITCDSDGKIDHYIDGDGIKSTLPLHEYDPGEPYLLGF  556 (652)
T ss_pred             HHHEEEEHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             67477205750584121002356623022358875511378865307988600231376654544478889998756652


Q ss_pred             ECCCCHHHHHCCCCC--CCCCCEEEEEECCCCEEE--E-EECCHHHHHH
Q ss_conf             688702232434768--998877999967990999--9-7389899987
Q gi|254780741|r  321 EDVAGYNINRKNWFN--GINMPTIAVKNVDGTIKA--I-REFSYNDYYN  364 (367)
Q Consensus       321 ~~~GAY~~~~~~~Fn--~~~~P~~v~~~~~g~~~~--~-r~e~~~d~~~  364 (367)
                      .-+|||+..|++--|  |.+-...|.++.+|+.++  + +..|..|.+.
T Consensus       557 FLVGAYQEILG~~HNLFGdt~~v~V~v~~~G~y~ie~~~egdTi~dmL~  605 (652)
T COG1166         557 FLVGAYQEILGNMHNLFGDTTAVHVVVDPKGSYEIEDIVEGDTVADMLE  605 (652)
T ss_pred             EHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHH
T ss_conf             1275799997666650589845899987998679986523560999998


No 23 
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=100.00  E-value=7.7e-33  Score=236.01  Aligned_cols=196  Identities=19%  Similarity=0.219  Sum_probs=160.6

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CCCCHHHHHHHHC
Q ss_conf             999999999985336986999541059999999998518748980799998987-36880108853-7778034788613
Q gi|254780741|r   14 LLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VAYKDCEIDAVLS   91 (367)
Q Consensus        14 i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~~~~~el~~a~~   91 (367)
                      ||+|++++++.++ ++++++||+|||+++.+++++.+.|+|+||+|++|+..++ +|+++++|+|+ |.+++++++.+++
T Consensus         1 ir~N~~~lk~~l~-~~~~i~~avKAn~~~~v~~~l~~~g~g~~vas~~E~~~~~~~G~~~~~Il~~g~~~~~~~~~~a~~   79 (211)
T cd06808           1 IRHNYRRLREAAP-AGITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAE   79 (211)
T ss_pred             CHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf             9799999998689-998899998308829999999973890789609999999975997556101566476689999999


Q ss_pred             CCC-EEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHCCCEEE
Q ss_conf             886-898567205999999861234--56148996357744310124557864357427888874-------31496066
Q gi|254780741|r   92 NCD-TIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EIKNVNGL  161 (367)
Q Consensus        92 ~~~-~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~~~i~Gi  161 (367)
                      .+. .+++||.+|++++.+.+.+.+  .+|.|||||+.            ..||||++.+++.+.       ...++.|+
T Consensus        80 ~~~~~~~vds~~~l~~l~~~a~~~~~~~~v~lrintg~------------~~~rfG~~~~e~~~~~~~~~~~~~l~l~Gi  147 (211)
T cd06808          80 QGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGD------------ENGKFGVRPEELKALLERAKELPHLRLVGL  147 (211)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC------------CCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             61224010677888778998885388851477672277------------767778899999999999996898666114


Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHH
Q ss_conf             530565666147899999999989---86508875087533776664455680789999998754216504530022
Q gi|254780741|r  162 MFHNNCENKSFLCFSAMLKNIEKE---FGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGE  235 (367)
Q Consensus       162 h~H~gs~~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR  235 (367)
                      |+|.||+..+...+.+.++.+.+.   +.+.+.+++++|+||||+++|.....             .....|+||||
T Consensus       148 ~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~iGgg~gv~y~~e~p-------------~~~~~~vrpG~  211 (211)
T cd06808         148 HTHFGSADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYLQELP-------------LGTFIIVEPGR  211 (211)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC-------------HHHEEEECCCC
T ss_conf             66543443898999999999999999999759697989969982437898898-------------26704634799


No 24 
>pfam00278 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain. These pyridoxal-dependent decarboxylases act on ornithine, lysine, arginine and related substrates.
Probab=99.88  E-value=1.2e-22  Score=168.74  Aligned_cols=103  Identities=23%  Similarity=0.329  Sum_probs=89.1

Q ss_pred             EEEEEEEEEECC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEEECCCCCCCCEEEECCCCC-CCCCC
Q ss_conf             888788786304-4-333433335656566400134553000----2478645998623336664552135667-78879
Q gi|254780741|r  243 TLNTTVLDISEN-I-KNLVIVDSSVEAHVPDYLLYQESATIY----PNTGPYTAMVCGRSCLAGDIFGEFHFEK-PVKIG  315 (367)
Q Consensus       243 ~lv~~V~~~K~~-~-~~~v~vd~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~G~~C~~~D~l~~~~~~~-~l~~G  315 (367)
                      +|+|+|+++|++ + +.|+++|+|++++++++++.+.++...    .+....+++|+||+|+++|+|.++..+| ++++|
T Consensus         1 ~Lvt~V~~~k~~~~~~~~~~ld~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gp~C~s~D~l~~~~~lP~~l~~G   80 (110)
T pfam00278         1 TLVTEVIDVKERGDDRKFVYLDDGVYGSPDPALYDALHPILPVSRLDDEPLRPYTLAGPTCDSGDVLARDVSLPLELEVG   80 (110)
T ss_pred             CCEEEEEEEECCCCCCEEEEECCCHHCCCCHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCC
T ss_conf             95799999953899516999888531141147648634428701678887357999741567687982233077233789


Q ss_pred             CEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             899996887022324347689988779999
Q gi|254780741|r  316 DRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       316 D~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
                      |+|+|.++|||+++|+++||++++|+++++
T Consensus        81 D~l~~~~~GAY~~~~ss~fNg~~~p~~v~v  110 (110)
T pfam00278        81 DWLVFFDAGAYTISLSSNFNGFPRPAEVLV  110 (110)
T ss_pred             CEEEECCCCCCCCHHCCCCCCCCCCCEEEC
T ss_conf             999988886233100266679898879979


No 25 
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.74  E-value=2.5e-14  Score=114.06  Aligned_cols=318  Identities=16%  Similarity=0.072  Sum_probs=184.9

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHH-HHCCCCCCCEEECC
Q ss_conf             8885689779999999999999853369869995410599999999985187-489807999989-87368801088537
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVML-GHEKFGGETHAYNV   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~l-a~~g~~~~~i~~~~   79 (367)
                      |+||+.|+|.+.+++|+++++......++++.==+|+--.+.+.+..-+.|. |+-|+.+.|++. +..|+. +.++.++
T Consensus         1 ~~TPaLvvD~~~le~Ni~~M~~~~~~~gv~lRPH~KTHKs~eia~~Q~~~Ga~git~at~~EAe~~~~~G~~-dilia~~   79 (382)
T cd06818           1 VSLPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR-RVLLANQ   79 (382)
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC-CEEEECC
T ss_conf             999779970999999999999999866983520401004799999999689983896779999999976986-4799426


Q ss_pred             CCCH---HHHHHHHCC--CCE--EEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-HHH--
Q ss_conf             7780---347886138--868--985672059999998612345614899635774431012455786435742-788--
Q gi|254780741|r   80 AYKD---CEIDAVLSN--CDT--IIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK-CKD--  149 (367)
Q Consensus        80 ~~~~---~el~~a~~~--~~~--i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~-~~~--  149 (367)
                      ...+   +.+.++.+.  ...  +.+||.+.++.|.+.++..+.++.+-|.-+.+            ..|-|+. .++  
T Consensus        80 iv~~~~~~rl~~l~~~~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ievd~G------------~~R~Gv~~~~~a~  147 (382)
T cd06818          80 LVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP------------GGRTGVRTEAEAL  147 (382)
T ss_pred             CCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHH
T ss_conf             5798899999999850899789999629999999999998559945899997889------------8878999869999


Q ss_pred             -H----HHHHHCCCEEEEECCCCC--CCCHHH---HHHHHHHHHHHH---HHCCC-CCE-EEEECCCCCCCCCCCCCHHH
Q ss_conf             -8----874314960665305656--661478---999999999898---65088-750-87533776664455680789
Q gi|254780741|r  150 -K----IESEIKNVNGLMFHNNCE--NKSFLC---FSAMLKNIEKEF---GHFIT-QIE-WISLGGGIHFTDKDYPVKDF  214 (367)
Q Consensus       150 -~----~~~~~~~i~Gih~H~gs~--~~~~~~---~~~~l~~~~~~~---~~~~~-~l~-~idiGGG~~~~~~~~~~~~~  214 (367)
                       +    .+....++.||+.|-|.-  ..+.+.   ..+.+..+.+..   .+.+. ... .+=-|||=+      +++..
T Consensus       148 ~l~~~i~~~~~L~~~Gl~~y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivs~GgT~------~f~~~  221 (382)
T cd06818         148 ALADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSA------WFDLV  221 (382)
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC------CHHHH
T ss_conf             999999729996594688546756678866899999999999999999999706788897089982895------54333


Q ss_pred             HHHHHHHHHHCCCEEEEEHHHHCCCC-------------------------CEEEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             99999875421650453002201457-------------------------41888788786304433343333565656
Q gi|254780741|r  215 CQRLKEFSEKYSVQIYLEPGEAIVTN-------------------------TTTLNTTVLDISENIKNLVIVDSSVEAHV  269 (367)
Q Consensus       215 ~~~i~~~~~~~~~~l~iEPGR~lv~~-------------------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~  269 (367)
                      .+.........+.+..+-||.|+.-|                         |...+++|+.+  ...+++++|+|.-.+-
T Consensus       222 ~~~~~~~~~~~~~~~elrpG~Yvf~D~g~Y~~~~~~~~~~~~~~~~~~f~~Al~VlttViS~--p~~~~ailDaG~K~ls  299 (382)
T cd06818         222 AEALAALALDGPVTLVLRSGCYVTHDHGIYRRAQQALRARDPLSLAGALRPALEIWAYVQSR--PEPGLAILGMGKRDVA  299 (382)
T ss_pred             HHHHCCCCCCCCCEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC--CCCCEEEECCCCCCCC
T ss_conf             45541445687732798671699745278764324443036655332221215999999642--4699699888651200


Q ss_pred             CCCCCCCCCCCCCCC------CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE
Q ss_conf             640013455300024------78645998623336664552135667788798999968870223243476899887799
Q gi|254780741|r  270 PDYLLYQESATIYPN------TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA  343 (367)
Q Consensus       270 ~~~~~~~~~~~~~~~------~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v  343 (367)
                      .+.-. + .+.....      .....+.|.+- -+++=++. .....++++||.|-+..-=+ |    +.+|.+  +..+
T Consensus       300 ~D~g~-P-~~~~~~~~g~~~~~~~~~~~v~~~-seEHgil~-~~~~~~l~vGd~v~iiP~H~-C----~T~n~~--~~~~  368 (382)
T cd06818         300 FDAGL-P-VPLRVFRPGGGVVRLPDGWEVTAL-NDQHAFLR-LPPESPLAVGDVIAFGISHP-C----TTFDKW--RVIL  368 (382)
T ss_pred             CCCCC-C-CCCCCCCCCCCCCCCCCCEEEECC-CCCEEEEE-CCCCCCCCCCCEEEEECCCC-C----CCHHHC--CEEE
T ss_conf             24699-8-653201588532358997078011-36324787-79989999977899979964-7----391108--8899


Q ss_pred             EEECCCCE
Q ss_conf             99679909
Q gi|254780741|r  344 VKNVDGTI  351 (367)
Q Consensus       344 ~~~~~g~~  351 (367)
                      ++++|+.+
T Consensus       369 vVd~~~~V  376 (382)
T cd06818         369 LVDDDYRV  376 (382)
T ss_pred             EEECCCEE
T ss_conf             99798869


No 26 
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.71  E-value=9.3e-14  Score=110.24  Aligned_cols=302  Identities=13%  Similarity=0.078  Sum_probs=178.6

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf             888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~   78 (367)
                      |+||+.++|.+.+++|++.++......++++.=-+||--.+.+.+..-+.| .|+-|+++.|++.. ..|+  +.|++ +
T Consensus         1 l~TP~l~vd~~~l~~Ni~~m~~~~~~~gv~lrPH~KThk~~e~~~~ql~~Ga~g~~vatl~EAe~l~~~G~--~dilla~   78 (353)
T cd06820           1 LDTPALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGL--SDIFIAY   78 (353)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCC--CCEEEEC
T ss_conf             99977997299999999999998987699477885131479999999867997499972999999997699--7668843


Q ss_pred             CCCCHHH---HHHHHCC-CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-HHHH---
Q ss_conf             7778034---7886138-868985672059999998612345614899635774431012455786435742-7888---
Q gi|254780741|r   79 VAYKDCE---IDAVLSN-CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK-CKDK---  150 (367)
Q Consensus        79 ~~~~~~e---l~~a~~~-~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~-~~~~---  150 (367)
                      |...+..   +.++.+. ...+.+||.+.++.+.+.++..+.++.+-|..+.+            ..|-|+. .+++   
T Consensus        79 p~v~~~~~~~l~~l~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ieid~G------------~~R~Gv~~~~~~~~l  146 (353)
T cd06820          79 PIVGRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG------------MNRCGVQTPEDAVAL  146 (353)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHHHH
T ss_conf             66898999999974304988999657999999999997679942899996888------------886888986999999


Q ss_pred             ----HHHHHCCCEEEEECCCCCCCCHHH-------HHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCHHHHHH
Q ss_conf             ----874314960665305656661478-------999999999898650887508753377--6664455680789999
Q gi|254780741|r  151 ----IESEIKNVNGLMFHNNCENKSFLC-------FSAMLKNIEKEFGHFITQIEWISLGGG--IHFTDKDYPVKDFCQR  217 (367)
Q Consensus       151 ----~~~~~~~i~Gih~H~gs~~~~~~~-------~~~~l~~~~~~~~~~~~~l~~idiGGG--~~~~~~~~~~~~~~~~  217 (367)
                          .+....++.|++.|-| +......       ..+.+......+.+.+.....+..||=  +........+      
T Consensus       147 ~~~i~~~~~l~l~Gv~~y~G-h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT~t~~~~~~~~~~------  219 (353)
T cd06820         147 ARAIASAPGLRFRGIFTYPG-HSYAPGALEEAAADEAEALLAAAGILEEAGLEPPVVSGGSTPTLWRSHEVPGI------  219 (353)
T ss_pred             HHHHHHCCCCEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEHHCCCCC------
T ss_conf             99998589976889995487-66783469999999999999999998846999888985699754600016765------


Q ss_pred             HHHHHHHCCCEEEEEHHHHCCC--------------CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf             9987542165045300220145--------------74188878878630443334333356565664001-34553000
Q gi|254780741|r  218 LKEFSEKYSVQIYLEPGEAIVT--------------NTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLL-YQESATIY  282 (367)
Q Consensus       218 i~~~~~~~~~~l~iEPGR~lv~--------------~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~-~~~~~~~~  282 (367)
                                 ..+-||.|+.-              .|...+++|+.+-  ....+++|+|.-.+-.+.-. ..-+-.+.
T Consensus       220 -----------tEl~~G~yvf~D~~~~~~~~~~~~~~Al~vl~~ViS~p--~~~~~~vd~G~k~ls~d~~~~~~g~g~~~  286 (353)
T cd06820         220 -----------TEIRPGTYIFNDASQVALGACTLDDCALTVLATVVSRP--TAERAVLDAGSKALTSDRGTGTTGYGHLL  286 (353)
T ss_pred             -----------CEECCCEEEECCHHHHCCCCCCHHHCEEEEEEEEEEEC--CCCCEEEECCCHHHCCCCCCCCCCCCCCC
T ss_conf             -----------16614317951567740476883123257888899406--99808990564443256788976775213


Q ss_pred             CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf             247864599862333666455213566778879899996887022324347689988779999679
Q gi|254780741|r  283 PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD  348 (367)
Q Consensus       283 ~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~  348 (367)
                      ..+   ...+.+.+ +++=++.-.-....+++||.|.+...=+= .    .+|.+  +..++++++
T Consensus       287 ~~~---~~~~~~~s-~EHg~l~~~~~~~~l~vGd~v~~~P~H~c-~----t~~~~--~~~~vv~~~  341 (353)
T cd06820         287 EYP---DARIVGLS-EEHGVIDLSGCDALPRVGDRVRVVPNHAC-V----VVNLV--DEVYLVDGG  341 (353)
T ss_pred             CCC---CCEEEEEC-CCCEEEECCCCCCCCCCCCEEEEEECCCC-H----HHHHC--CEEEEEECC
T ss_conf             899---87794000-77408878887789999999999938821-7----68847--989999999


No 27 
>TIGR01273 speA arginine decarboxylase; InterPro: IPR002985 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes eukaryotic ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine.   Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. The tomato ADC gene contains an open reading frame encoding a polypeptide of 502 amino acids and a predicted molecular mass of ~55 kD . The predicted amino acid sequence shares 47 and 38 0dentify with oat and Escherichia coli ADCs, respectively. Gel blot hybridisation experiments show that, in tomato, ADC is encoded by a single gene and is expressed as a transcript of ~2.2 kb in the fruit pericarp and leaf tissues .; GO: 0008792 arginine decarboxylase activity, 0006527 arginine catabolic process, 0008295 spermidine biosynthetic process.
Probab=99.67  E-value=9.4e-15  Score=116.82  Aligned_cols=364  Identities=19%  Similarity=0.207  Sum_probs=240.3

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH--------CCCEEEEEEECCCCHHHHHHHHHH------CCEEEEECHHHHHHHH
Q ss_conf             88856897799999999999998533--------698699954105999999999851------8748980799998987
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN--------AGVKLLLALKCFAAWGMFDTLNQY------MDGTTSSSLYEVMLGH   67 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~--------~~~~i~yA~KaN~~~~il~~l~~~------g~g~dv~S~~E~~la~   67 (367)
                      ++-|+.+-..+.+..++..+..++..        ...+..|++|.|....++..+...      ..|.+++|.-|+..+.
T Consensus        61 ~~~p~~~~fp~~~~~~~~~~~~~f~~~~~~~~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gl~~g~~p~~~~~~  140 (657)
T TIGR01273        61 LKLPLLLRFPDILQHRLRSLNDAFDNAIEEYGYPGHYQGVYPIKVNQHRGVVEDLVAFGKGYGLPLGLEAGSKPELLLAL  140 (657)
T ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             12540010157888998888888877776413676301564132054156899987521014654332357623677876


Q ss_pred             C--CC--CCCCEEECCCCCHHHHHHHH-----CCCCEEEECCCHHHHHHHHHHHC--CCC--CCEEEEEECCCCCCCCCC
Q ss_conf             3--68--80108853777803478861-----38868985672059999998612--345--614899635774431012
Q gi|254780741|r   68 E--KF--GGETHAYNVAYKDCEIDAVL-----SNCDTIIFNTVSQLNKFKDKAQK--LHK--KIGLRINPSVSYSKFILA  134 (367)
Q Consensus        68 ~--g~--~~~~i~~~~~~~~~el~~a~-----~~~~~i~iDs~~El~~i~~~a~~--~~~--~I~lRinP~~~~~~~~~~  134 (367)
                      .  ..  ++..++.|+-+..+-++.++     .....++++...|++.+.+.++.  .+.  .+++|+.-. +.+...+.
T Consensus       141 ~~~~~~~~~~~~~c~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~-~~~~g~w~  219 (657)
T TIGR01273       141 ALATKGNPGAPIVCNGYKDREYIELALIGRKLGHNVFIVLEKLSELDLVLDEAKKNELGVKPKLGLRARLL-SKGSGKWG  219 (657)
T ss_pred             HHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEH-HCCCCCCC
T ss_conf             66214677634786165414577777654311651488851446678998765212224554433001100-00355221


Q ss_pred             CCCCCCCCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCC-CEEEEECCCC
Q ss_conf             45578643574278888743--------149606653056566614789999999998986---50887-5087533776
Q gi|254780741|r  135 DPNRPFSRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQ-IEWISLGGGI  202 (367)
Q Consensus       135 ~~~~~~skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~-l~~idiGGG~  202 (367)
                      .+++..+|||....++....        ...+.-+|||.|++......+.+.+....+.+.   +++.. ++++|+|||+
T Consensus       220 ~~~g~~~~fgl~~~~~~~~~~~~~~~~~~~~~~~~h~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gggl  299 (657)
T TIGR01273       220 SSGGEKSKFGLSASEVLEVVKLLEENGLLDSLKLLHFHLGSQISNLDDLKKGLREAARLYCELRKLGAPNIDYVDVGGGL  299 (657)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf             23565321355489999999987640134556665543111001367888888888999999987245533156447653


Q ss_pred             CCCCCC-----------CCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECC-CC--CCCCC
Q ss_conf             664455-----------68078999----9998754216---5045300220145741888788786304-43--33433
Q gi|254780741|r  203 HFTDKD-----------YPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISEN-IK--NLVIV  261 (367)
Q Consensus       203 ~~~~~~-----------~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~--~~v~v  261 (367)
                      ++.+..           +.+++++.    .++..++..+   +.++.|.||++.+....+++.++..... ..  .--..
T Consensus       300 g~~y~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~c~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (657)
T TIGR01273       300 GVDYDGTKSSSSDCSVNYGLEEYASDVVGALREVCDDKGLPHPVIITESGRALTAHHAVLVTNVLGVEAHPEDPPDPEPL  379 (657)
T ss_pred             CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHHHCCCCCCCCCCCHHC
T ss_conf             22445432343200110236788889999999888740776762330266300000021111333112345565420001


Q ss_pred             C-CC---CC-------CC--------------------------------------------------------------
Q ss_conf             3-35---65-------65--------------------------------------------------------------
Q gi|254780741|r  262 D-SS---VE-------AH--------------------------------------------------------------  268 (367)
Q Consensus       262 d-~g---~~-------~~--------------------------------------------------------------  268 (367)
                      + ..   ..       ..                                                              
T Consensus       380 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (657)
T TIGR01273       380 DEDAPPLVRGLWETLEDLYGPLDRRSLLELLHDALHLLEEAVEGFALGYLDLEERAWAEQLYLAILRKLHGKLSAKNKDH  459 (657)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             34302688888899998740000246788888888888777765530100146666678999999988877666421442


Q ss_pred             ------------------------CCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCCCCEEEE---------CCCC-
Q ss_conf             ------------------------664001345530002-----4786459986233366645521---------3566-
Q gi|254780741|r  269 ------------------------VPDYLLYQESATIYP-----NTGPYTAMVCGRSCLAGDIFGE---------FHFE-  309 (367)
Q Consensus       269 ------------------------~~~~~~~~~~~~~~~-----~~~~~~~~v~G~~C~~~D~l~~---------~~~~-  309 (367)
                                              +++.|-......+.|     ........+.--+|++.-.+..         ...+ 
T Consensus       460 ~~~~~~~~~~~~~~~~~~~~~f~~~pd~w~~~~~~p~~p~~~l~~~p~~~~~~~d~~cd~dg~~~~~~~~~~~~~~~p~~  539 (657)
T TIGR01273       460 RPVLDELQERLADKYLVNFSLFQSLPDAWGIDQLFPILPLERLDEKPDRRAVLLDLTCDSDGKVDKFVGGQGLESTLPLH  539 (657)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf             15788766666666653124443143111010101222200024320011101000147752034441235542213345


Q ss_pred             -CCC---CCC-CEEEEECCCCHHHHHCCCCC--CCCCCEEEEEECCC-CEEEE--E-ECCHHHHHHHC
Q ss_conf             -778---879-89999688702232434768--99887799996799-09999--7-38989998742
Q gi|254780741|r  310 -KPV---KIG-DRISFEDVAGYNINRKNWFN--GINMPTIAVKNVDG-TIKAI--R-EFSYNDYYNNL  366 (367)
Q Consensus       310 -~~l---~~G-D~l~i~~~GAY~~~~~~~Fn--~~~~P~~v~~~~~g-~~~~~--r-~e~~~d~~~~~  366 (367)
                       .+.   ..+ -++.|.-+|||...++...|  +-+....+..+.+| ...+-  + .++.+|.+..+
T Consensus       540 ~~~~~gc~~~~~~~g~~~~g~y~~~lg~~h~lfg~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~  607 (657)
T TIGR01273       540 ELDPNGCDEGGYLLGFFLVGAYQEILGDLHNLFGDTDAVEVVLDGDGGGYEVELVLEGDTTEDLLRYV  607 (657)
T ss_pred             CCCCCCCCCCCCEEEEEEHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCEEHHHHHHCCHHHHHHHHH
T ss_conf             55666777664056421022368763112220488514788762787530012343020278888863


No 28 
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.65  E-value=4.6e-12  Score=99.08  Aligned_cols=314  Identities=15%  Similarity=0.100  Sum_probs=186.0

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf             888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~   78 (367)
                      |+||+.|+|.+.+++|+++++......+.++.=-+||--.+.+.+..-+.| .|+-|+.+.|++.. .+|+.  .|.+ +
T Consensus         4 l~TPalvvd~~~l~~Ni~~M~~~~~~~g~~lRPH~KTHKs~eia~~Q~~~Ga~gi~~atv~EAe~~a~~G~~--dIl~a~   81 (374)
T cd06812           4 LDTPFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYR--DILYAV   81 (374)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCC--EEEEEC
T ss_conf             899769972999999999999999876996602610014799999999679984897889999999977987--399935


Q ss_pred             CCCCH--HHHHHHHCCC--CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH------
Q ss_conf             77780--3478861388--6898567205999999861234561489963577443101245578643574278------
Q gi|254780741|r   79 VAYKD--CEIDAVLSNC--DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK------  148 (367)
Q Consensus        79 ~~~~~--~el~~a~~~~--~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~------  148 (367)
                      |....  ..+.++.+.+  ..+.+||.+.++.+.+.++..+.++.+-|.-+.+            ..|-|+...      
T Consensus        82 ~i~~~kl~rl~~l~~~~~~~~v~VD~~~~~~~l~~~~~~~g~~~~V~Ievd~G------------~~RtGv~~~~~al~~  149 (374)
T cd06812          82 GIAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD------------GHRGGIAPDSDALLE  149 (374)
T ss_pred             CCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCCHHHHHH
T ss_conf             77878999999997369948999557999999999999759944699997689------------986788970699999


Q ss_pred             --HHHHHHHCCCEEEEECCC-CCC-CCHHHHHH-------HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             --888743149606653056-566-61478999-------9999998986508875087533776664455680789999
Q gi|254780741|r  149 --DKIESEIKNVNGLMFHNN-CEN-KSFLCFSA-------MLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQR  217 (367)
Q Consensus       149 --~~~~~~~~~i~Gih~H~g-s~~-~~~~~~~~-------~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~  217 (367)
                        ++......++.|++.|-| ++. .+.+....       .+..+.+.+.+.+.....+-.||- |........+     
T Consensus       150 ~~~~~~~~~l~~~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT-pt~~~~~~~~-----  223 (374)
T cd06812         150 IARILHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVGST-PTAHFAEDLT-----  223 (374)
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCEEECCCC-----
T ss_conf             9999747997454676238743478999999999999999999999999865999887852688-7400110367-----


Q ss_pred             HHHHHHHCCCEEEEEHHHHCCCC--------------CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-C----C
Q ss_conf             99875421650453002201457--------------418887887863044333433335656566400134-5----5
Q gi|254780741|r  218 LKEFSEKYSVQIYLEPGEAIVTN--------------TTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQ-E----S  278 (367)
Q Consensus       218 i~~~~~~~~~~l~iEPGR~lv~~--------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~-~----~  278 (367)
                              ++ .-+-||.|+.-|              |...+++|+.++. .+..+++|+|.-.+-++..... .    +
T Consensus       224 --------gv-tE~~pG~Yvf~D~~~~~~g~~~~~~~Al~Vl~tViS~~p-~~~~~~iDaG~kals~D~g~~~~~~~~g~  293 (374)
T cd06812         224 --------GV-TEVRAGVYVFFDLVMAGIGVCGLDDIALSVVTTVIGHQP-EKGWILIDAGWMALSRDRGTARQAVDQGY  293 (374)
T ss_pred             --------CC-CCCCCCEEEECCHHHHCCCCCCHHHHHHEEEEEEEECCC-CCCCEEECCCCCEEECCCCCCCCCCCCCC
T ss_conf             --------75-201572158504777515889756510224457651378-99937975774012114577667655666


Q ss_pred             CCCCCCCC-C-EEEEEECCCCCCCCEEEE----CCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEE
Q ss_conf             30002478-6-459986233366645521----35667788798999968870223243476899887799996799099
Q gi|254780741|r  279 ATIYPNTG-P-YTAMVCGRSCLAGDIFGE----FHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIK  352 (367)
Q Consensus       279 ~~~~~~~~-~-~~~~v~G~~C~~~D~l~~----~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~  352 (367)
                      ..+....+ . ..+.+.+.+ +++=++.-    ....+++++||.|-+..-=+ |    +.+|.+  +..+++++||.+.
T Consensus       294 g~v~~~~g~~~~~~~v~~~s-eEHg~l~~~~~~~~~~~~l~vGd~v~liP~H~-C----~T~~l~--~~~~vv~~~g~V~  365 (374)
T cd06812         294 GLVCDVAGSPLPGLIVTSTN-QEHGIIALRGGSDLSLPDLPIGTRLRILPNHA-C----ATAAQH--DHYHVLDGEGVVQ  365 (374)
T ss_pred             CEEECCCCCCCCCEEEECCC-CCCEEEECCCCCCCCCCCCCCCCEEEEECCCC-C----CCHHCC--CEEEEEECCCEEE
T ss_conf             55615778858984891355-65059977888755456798488899964985-9----021157--8799997989899


Q ss_pred             E
Q ss_conf             9
Q gi|254780741|r  353 A  353 (367)
Q Consensus       353 ~  353 (367)
                      -
T Consensus       366 ~  366 (374)
T cd06812         366 A  366 (374)
T ss_pred             E
T ss_conf             9


No 29 
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.65  E-value=1e-12  Score=103.46  Aligned_cols=302  Identities=15%  Similarity=0.076  Sum_probs=178.8

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf             888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~   78 (367)
                      |+||+.++|.+.+++|++.++......++++.=-+||-..+.+.+..-+.| .|+-|+++.|++.. ..|+  +.|.+ +
T Consensus         5 l~TP~lvvd~~~l~~Ni~~m~~~~~~~gv~lrPH~KThks~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G~--~dIlla~   82 (358)
T cd06819           5 IDTPALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGI--RDILITN   82 (358)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCC--CEEEEEC
T ss_conf             69983997299999999999999986799677773120789999999966997499657999999997799--7068854


Q ss_pred             CCCCH---HHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HH----
Q ss_conf             77780---3478861388-689856720599999986123456148996357744310124557864357427-88----
Q gi|254780741|r   79 VAYKD---CEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KD----  149 (367)
Q Consensus        79 ~~~~~---~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~----  149 (367)
                      |...+   +.+.++.+.. ..+.+||.+.++.+.+.++..+.++.+-|.-+.+            ..|-|+.. ++    
T Consensus        83 p~v~~~~l~rl~~l~~~~~~~~~vDs~~~~~~l~~~a~~~~~~~~V~Ievd~G------------~~R~Gv~~~~~~~~l  150 (358)
T cd06819          83 EVVGPAKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG------------QGRCGVPPGEAALAL  150 (358)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHHHH
T ss_conf             66897899999999854998999949999999999998659963699997889------------987788886999999


Q ss_pred             ---HHHHHHCCCEEEEECCCC--CCCCHHHHH-------HHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCCCCCHHHHH
Q ss_conf             ---887431496066530565--666147899-------9999999898650887508753377-666445568078999
Q gi|254780741|r  150 ---KIESEIKNVNGLMFHNNC--ENKSFLCFS-------AMLKNIEKEFGHFITQIEWISLGGG-IHFTDKDYPVKDFCQ  216 (367)
Q Consensus       150 ---~~~~~~~~i~Gih~H~gs--~~~~~~~~~-------~~l~~~~~~~~~~~~~l~~idiGGG-~~~~~~~~~~~~~~~  216 (367)
                         +.+....++.|++.|-|.  +..+.+.-+       +.+..+.+.+.+.+.....+..||- ..--..+.       
T Consensus       151 a~~I~~~~~l~l~Gi~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ivs~GgT~t~~~~~~~-------  223 (358)
T cd06819         151 ARTIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGLPCEIVTGGGTGTYEFEAAS-------  223 (358)
T ss_pred             HHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEECCC-------
T ss_conf             9999848998062010465333027998999999999999999999999966999855744788750222256-------


Q ss_pred             HHHHHHHHCCCEEEEEHHHHCC-----------------CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9998754216504530022014-----------------57418887887863044333433335656566400134553
Q gi|254780741|r  217 RLKEFSEKYSVQIYLEPGEAIV-----------------TNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESA  279 (367)
Q Consensus       217 ~i~~~~~~~~~~l~iEPGR~lv-----------------~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~  279 (367)
                               +....+-||.|+.                 ..|...+++|+.+  ....++++|+|...+-.+.-    .+
T Consensus       224 ---------~~~tEl~~G~yvf~D~~y~~~~~~~~~~~~~~Al~V~~~ViS~--p~~~~~~vd~G~k~ls~d~g----~p  288 (358)
T cd06819         224 ---------GVYTELQAGSYVFMDADYGDNEDEGGAPPFENALFVLTTVISA--NAPGRAVVDAGLKSLSVDSG----LP  288 (358)
T ss_pred             ---------CCEEEECCCEEEEECHHHHHHCCCCCCCCCCEEEEEEEEEECC--CCCCCEEECCCCCCCCCCCC----CC
T ss_conf             ---------7337977842996167886411345676665007998677725--78882786477630003678----88


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf             000247864599862333666455213566778879899996887022324347689988779999679909
Q gi|254780741|r  280 TIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTI  351 (367)
Q Consensus       280 ~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~  351 (367)
                      ......   .+.+.+ +-+++=++.......++++||.|.|...=+ |.    .+|.+  +..+++++ |.+
T Consensus       289 ~~~~~~---~~~v~~-~s~EHg~l~~~~~~~~l~vGd~v~~~P~H~-C~----t~~~~--~~~~vv~~-~~V  348 (358)
T cd06819         289 KVAGRP---GLSYVR-AGDEHGIVELEDGAAPLKIGDRLELVPGHC-DP----TVNLH--DWYVGVRG-GVV  348 (358)
T ss_pred             CCCCCC---CCEEEC-CCCCEEEEECCCCCCCCCCCCEEEEEECCC-CH----HHHHC--CEEEEEEC-CEE
T ss_conf             565899---857940-157500787799878999999999980883-26----37738--98999999-999


No 30 
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.59  E-value=7.1e-12  Score=97.85  Aligned_cols=300  Identities=11%  Similarity=0.046  Sum_probs=171.9

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf             888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~   78 (367)
                      |+||+.+.|.+.+++|+++++...+..+ ++.=-+||--.+.+.+..-+.| .|+.|+++.|++.. ..|+.  .|.+ +
T Consensus         7 l~TPalvvD~~~l~~Ni~~m~~~~~~~~-~lRPH~KThKs~~ia~~Ql~~Ga~gi~vatl~EAe~~a~~G~~--dIlia~   83 (361)
T cd06821           7 IISPALAVYPDRIEENIRRMIRMAGDPQ-RLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAP--DVLLAY   83 (361)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCC--CEEEEC
T ss_conf             8997399719999999999999623168-7778964117999999999779983796279999999975997--589975


Q ss_pred             CCCCHH--HHHHHHCC--C--CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-H-
Q ss_conf             777803--47886138--8--68985672059999998612345614899635774431012455786435742788-8-
Q gi|254780741|r   79 VAYKDC--EIDAVLSN--C--DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD-K-  150 (367)
Q Consensus        79 ~~~~~~--el~~a~~~--~--~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~-~-  150 (367)
                      |...++  .+.++.+.  .  ..+.+||.+.++.+.+.+...+.++.+-|.-+.+            ..|-|+...+ + 
T Consensus        84 piv~~k~~rl~~l~~~~~~~~i~v~VDs~~~~~~l~~~~~~~~~~~~V~ievD~G------------~~R~Gv~~~~~a~  151 (361)
T cd06821          84 PLVGPNIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG------------MNRTGIAPGEDAE  151 (361)
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHH
T ss_conf             7765669999998753889779999708999999999998669960699997678------------8868888879999


Q ss_pred             ------HHHHHCCCEEEEECCCC-CCCCHHH----HHHH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf             ------87431496066530565-6661478----9999---99999898650887508753377666445568078999
Q gi|254780741|r  151 ------IESEIKNVNGLMFHNNC-ENKSFLC----FSAM---LKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQ  216 (367)
Q Consensus       151 ------~~~~~~~i~Gih~H~gs-~~~~~~~----~~~~---l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~  216 (367)
                            .+....++.|++.|-|. +..+.+.    .++.   +..+.+.+++.+.....+.+||- |    .+++.    
T Consensus       152 ~La~~i~~~~~L~l~Gi~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT-p----t~~~~----  222 (361)
T cd06821         152 ELYRAIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVAGGT-P----SFPFH----  222 (361)
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-C----CCCCC----
T ss_conf             99999985899838789865363456787999999999999999999999974999751405797-5----40300----


Q ss_pred             HHHHHHHHCCCEEEEEHHHHCCCC--------------CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999875421650453002201457--------------418887887863044333433335656566400134553000
Q gi|254780741|r  217 RLKEFSEKYSVQIYLEPGEAIVTN--------------TTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIY  282 (367)
Q Consensus       217 ~i~~~~~~~~~~l~iEPGR~lv~~--------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~  282 (367)
                            ..+. .+-+-||.|+.-|              |...+++|+..  ...+.+++|+|.-.+-.+... +. . ..
T Consensus       223 ------~~~~-~~Ev~pG~yvf~D~~~~~~~~~~~~~~Al~Vla~ViS~--p~~~~~~vDaG~k~ls~D~~~-p~-~-~~  290 (361)
T cd06821         223 ------AAYT-DVECSPGTFVLWDAGYGSKLPDLGFKPAALVVTRVISH--PTAGRVTLDLGHKAVASDPPL-PR-V-CL  290 (361)
T ss_pred             ------CCCC-CEEECCCEEEECCCHHHHCCCCCCCCEEEEEEEEEEEE--CCCCEEEECCCCCCCCCCCCC-CC-C-EE
T ss_conf             ------0377-44753765898252344226675543226999999714--489906877764400356799-85-1-46


Q ss_pred             CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf             247864599862333666455213566778879899996887022324347689988779999679
Q gi|254780741|r  283 PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD  348 (367)
Q Consensus       283 ~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~  348 (367)
                      ....  .+.+.|.+ +++=++ +.....++++||.|.+...=+ |.    .+|.+  +..++++++
T Consensus       291 ~~~~--~~~~~~~s-~EHg~l-~~~~~~~l~vGd~v~i~P~H~-C~----t~~~~--~~~~vv~~~  345 (361)
T cd06821         291 LGLP--DAEPVGHS-EEHLVL-ETPEAARPEIGDVLYGIPRHI-CP----TVALY--DEALVVRDG  345 (361)
T ss_pred             CCCC--CCEECCCC-CCEEEE-ECCCCCCCCCCCEEEEECCCC-CH----HHHHC--CEEEEEECC
T ss_conf             0799--85680456-866048-889888899999999973984-85----57717--879999999


No 31 
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.54  E-value=3.5e-11  Score=93.31  Aligned_cols=312  Identities=14%  Similarity=0.092  Sum_probs=188.3

Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEECCC
Q ss_conf             8568977999999999999985336986999541059-999999998518-74898079999898-73688010885377
Q gi|254780741|r    4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA-AWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAYNVA   80 (367)
Q Consensus         4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~-~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~~~~   80 (367)
                      .|.-..|.+.|+.|++.+++.....++++.=-+|||. .+.|.+.+.+.| .++-++.+.|+..- .+|.....++..++
T Consensus         1 ~PrleIdL~~l~~N~~~l~~~~~~~gi~~~~VvKa~aG~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi~~pillL~~p   80 (353)
T cd06815           1 YPRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLLRIP   80 (353)
T ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf             97699839999999999999760549889999844689599999999879999997028999999975999978997268


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------
Q ss_conf             7803478861388689856720599999986123456148996357744310124557864357427888874-------
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------  153 (367)
                      . .++++.+++......+-+++.++.+.+.|++.+++..+-+.-          ++  ..+|.|+..+++.+.       
T Consensus        81 ~-~se~~~vv~~~dis~~se~~~i~aLs~~A~~~gk~~~V~l~V----------Dt--Gm~R~Gv~ped~~~~~~~I~~l  147 (353)
T cd06815          81 M-LSEVEDVVKYADISLNSELETIKALSEEAKKQGKIHKIILMV----------DL--GDLREGVLPEDLLDFVEEILKL  147 (353)
T ss_pred             C-HHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE----------EC--CCCCCCCCHHHHHHHHHHHHCC
T ss_conf             8-889999987330420287999999999999869847899999----------68--9995788989999999998659


Q ss_pred             HHCCCEEEEECCCCCCC---CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CCCCCCCHHHHHHHHHHHHH----
Q ss_conf             31496066530565666---1478999999999898650887508753377666--44556807899999987542----
Q gi|254780741|r  154 EIKNVNGLMFHNNCENK---SFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHF--TDKDYPVKDFCQRLKEFSEK----  224 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~---~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~--~~~~~~~~~~~~~i~~~~~~----  224 (367)
                      ....++||..|.+|...   +.+.+.+..+...++-.+++.+++++.-|+--.+  -..+...    ..+.++.--    
T Consensus       148 p~i~l~GI~ThfaC~~gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~----~~IN~lRiGe~i~  223 (353)
T cd06815         148 PGIELVGIGTNLGCYGGVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELP----GGINQLRIGEAIL  223 (353)
T ss_pred             CCCEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCC----CCCCCCCCCCEEE
T ss_conf             995999988876357888999999999999999999984998766970537768988558985----4321033331589


Q ss_pred             CCCE-EEEEHHHHCCCCCEEEEEEEEEEECC-C------------CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEE
Q ss_conf             1650-45300220145741888788786304-4------------333433335656-5664001345530002478645
Q gi|254780741|r  225 YSVQ-IYLEPGEAIVTNTTTLNTTVLDISEN-I------------KNLVIVDSSVEA-HVPDYLLYQESATIYPNTGPYT  289 (367)
Q Consensus       225 ~~~~-l~iEPGR~lv~~ag~lv~~V~~~K~~-~------------~~~v~vd~g~~~-~~~~~~~~~~~~~~~~~~~~~~  289 (367)
                      ++.. ..=+|=-.+--|+..|.++|+.+|+. -            ....+.|-|... -+-+..+..-.+... ......
T Consensus       224 ~G~~~~~~~~i~~l~~d~~~L~aeViEik~kps~p~g~~g~~afG~~~~f~d~g~~~rAIl~iG~~D~~~~~l-~p~~~~  302 (353)
T cd06815         224 LGRETTYNEPIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDVDPDGL-TPVDNG  302 (353)
T ss_pred             EECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCHHHC-EECCCC
T ss_conf             6125777764300046418999999995046777876312257787522426884179999766555777563-477998


Q ss_pred             EEEECCCCCCCCEEEECCCC--CCCCCCCEEEEEC-CCCHHHHHCCCCCC
Q ss_conf             99862333666455213566--7788798999968-87022324347689
Q gi|254780741|r  290 AMVCGRSCLAGDIFGEFHFE--KPVKIGDRISFED-VAGYNINRKNWFNG  336 (367)
Q Consensus       290 ~~v~G~~C~~~D~l~~~~~~--~~l~~GD~l~i~~-~GAY~~~~~~~Fn~  336 (367)
                      ..|.|.   |.|.+.-+...  .++++||.+-|.- =||--.+|.|.|..
T Consensus       303 i~IlGa---sSDhlivDit~~~~~~kvGD~i~F~l~Y~a~l~~m~s~~v~  349 (353)
T cd06815         303 IEILGA---SSDHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTSPYVE  349 (353)
T ss_pred             EEEEEC---CCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCEE
T ss_conf             099822---57548997767768888898899965999999984589814


No 32 
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.54  E-value=1.9e-10  Score=88.45  Aligned_cols=294  Identities=14%  Similarity=0.057  Sum_probs=167.9

Q ss_pred             CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----HHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC
Q ss_conf             568-97799999999999998533698699954105999----9999998518748980799998987-36880108853
Q gi|254780741|r    5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAW----GMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN   78 (367)
Q Consensus         5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~----~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~   78 (367)
                      |.+ ..|.+.|++|++.++..  .++.+++-.+|||..=    .|.+.+ +.-++|-|+++.|....+ +|.....++++
T Consensus         3 p~~a~IdL~al~~N~~~lr~~--~~~~~i~aVVKAnAYGhG~~~va~~l-~g~~~faVa~~~Ea~~LR~~gi~~pIlvl~   79 (355)
T PRK03646          3 PIQASLDLQALKQNLSIVREA--APGARVWSVVKANAYGHGIERIWSAL-GATDGFAVLNLEEAITLRERGWKGPILMLE   79 (355)
T ss_pred             CEEEEEEHHHHHHHHHHHHHH--CCCCEEEEEEEECCCCCCHHHHHHHH-HCCCEEEEEEHHHHHHHHHCCCCCCEEEEC
T ss_conf             789999699999999999855--89986999995344648799999998-389979994699999999649999779753


Q ss_pred             CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf             777803478861388689856720599999986123456148996357744310124557864357427888874-----
Q gi|254780741|r   79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-----  153 (367)
Q Consensus        79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-----  153 (367)
                      |...++++..+.++.-..++.|..+++.+.+.....+.+|-|.|            +||  .+|+|+..+++.+.     
T Consensus        80 g~~~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~vhlki------------DTG--M~RlG~~~~e~~~~~~~l~  145 (355)
T PRK03646         80 GFFHAQELELYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKV------------NSG--MNRLGFQPERVQTVWQQLR  145 (355)
T ss_pred             CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEEE------------ECC--CCCCCCCHHHHHHHHHHHH
T ss_conf             88998999999981986875819999999863517994699999------------079--8778988578999999998


Q ss_pred             --HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE--
Q ss_conf             --3149606653056566614789999999998986508875087533776664455680789999998754216504--
Q gi|254780741|r  154 --EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQI--  229 (367)
Q Consensus       154 --~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l--  229 (367)
                        ....+.|+-.|..+- .+.+...+.++...+....+......-|=+|-+..+...++.      ++-=..-|+..-  
T Consensus       146 ~~~~l~~~gi~SHfa~a-d~~~~~~~Q~~~F~~~~~~l~~~~~lanSa~~l~~p~~~~d~------vR~Gi~lYG~~p~~  218 (355)
T PRK03646        146 AMGNVGEMTLMSHFARA-DHPDGISEAMARIEQAAEGLECERSLSNSAATLWHPQAHSDW------VRPGIILYGASPSG  218 (355)
T ss_pred             HCCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCE------EEEEEEEECCCCCC
T ss_conf             48998758999862457-880679999999999972678665452879997898567974------63237835688664


Q ss_pred             EEEHHHH-CCCCCEEEEEEEEEEECC-CCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCC-----CEEEEEECCC
Q ss_conf             5300220-145741888788786304-4333433335------6565664001345530002478-----6459986233
Q gi|254780741|r  230 YLEPGEA-IVTNTTTLNTTVLDISEN-IKNLVIVDSS------VEAHVPDYLLYQESATIYPNTG-----PYTAMVCGRS  296 (367)
Q Consensus       230 ~iEPGR~-lv~~ag~lv~~V~~~K~~-~~~~v~vd~g------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~G~~  296 (367)
                      ..+|... -.-+++.+-++|+.+|+= ....+.-++.      +..-+-|..|..=++....+.+     ...+-|+|..
T Consensus       219 ~~~~~~~~~LkPvmsl~a~i~~vk~l~~G~~VgYg~t~~a~~~~~ia~vpiGYaDG~~R~~sn~~~V~i~G~~~pivGrI  298 (355)
T PRK03646        219 QWRDIANTGLRPVMTLSSEIIGVQTLPAGERVGYGGRYTARREQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTRTVGTV  298 (355)
T ss_pred             CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCEEEEEECEE
T ss_conf             44444234772208999999999981689954678752424756999984041356343357997899999995476776


Q ss_pred             CCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             36664552135-66778879899996887
Q gi|254780741|r  297 CLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       297 C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      |+  |.+.-+. ..|+.++||.+.+..-.
T Consensus       299 ~M--D~~~vDvt~~~~~~~Gd~V~l~G~~  325 (355)
T PRK03646        299 SM--DMLAVDLTPCPQAGIGTPVELWGKE  325 (355)
T ss_pred             CC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             45--5689988899878999999998999


No 33 
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.50  E-value=2.4e-10  Score=87.77  Aligned_cols=291  Identities=16%  Similarity=0.136  Sum_probs=167.7

Q ss_pred             EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECC
Q ss_conf             68977999999999999985336986999541059----999999998518-7489807999989873-68801088537
Q gi|254780741|r    6 YYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNV   79 (367)
Q Consensus         6 ~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~   79 (367)
                      ..=.|.+.|+.|++.+++... ++.+++--+|||.    ...|.+.+.+.| ++|-|+++.|....++ |......++++
T Consensus         3 ~~eIdl~al~~N~~~lr~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~~~~Ilvl~~   81 (367)
T cd00430           3 WAEIDLDALRHNLRVIRRLLG-PGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG   81 (367)
T ss_pred             EEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC
T ss_conf             999819999999999998568-9986999996554657789999999987979999854999999997299998599668


Q ss_pred             CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf             7780347886138868985672059999998612345--6148996357744310124557864357427888874----
Q gi|254780741|r   80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----  153 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----  153 (367)
                      .. ++++..+.++....++.|.++++.+.+.++..+.  +|-|-||            ||  .+|+|+..+++.+.    
T Consensus        82 ~~-~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~~~~l  146 (367)
T cd00430          82 TP-PEEAEEAIEYDLTPTVSSLEQAEALSAAAARLGKTLKVHLKID------------TG--MGRLGFRPEEAEELLEAL  146 (367)
T ss_pred             CC-HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEE------------CC--CCCCCCCHHHHHHHHHHH
T ss_conf             99-7999999961807687869999999999887599823999980------------68--875788979999999999


Q ss_pred             ---HHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHH---HHHCCCCCEEEEECC---CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             ---31496066530565666-147899999999989---865088750875337---76664455680789999998754
Q gi|254780741|r  154 ---EIKNVNGLMFHNNCENK-SFLCFSAMLKNIEKE---FGHFITQIEWISLGG---GIHFTDKDYPVKDFCQRLKEFSE  223 (367)
Q Consensus       154 ---~~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~---~~~~~~~l~~idiGG---G~~~~~~~~~~~~~~~~i~~~~~  223 (367)
                         ....+.|+-.|..+-.. +.+.-.+.++...+.   +.+.+....++.+.-   =+..+...+++      ++-=..
T Consensus       147 ~~~~~l~~~gi~SHla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNS~~~l~~~~~~~d~------vRpGi~  220 (367)
T cd00430         147 KALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPEAHFDM------VRPGIA  220 (367)
T ss_pred             HHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCE------EECCEE
T ss_conf             86899618899740235788770788999999999999998648997637601689777395003880------601654


Q ss_pred             HCCCEEEE-EHHHHCCCCCEEEEEEEEEEECC-CCC-------C--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21650453-00220145741888788786304-433-------3--------4333356565664001345530002478
Q gi|254780741|r  224 KYSVQIYL-EPGEAIVTNTTTLNTTVLDISEN-IKN-------L--------VIVDSSVEAHVPDYLLYQESATIYPNTG  286 (367)
Q Consensus       224 ~~~~~l~i-EPGR~lv~~ag~lv~~V~~~K~~-~~~-------~--------v~vd~g~~~~~~~~~~~~~~~~~~~~~~  286 (367)
                      -|+..-.- .+-..-.-++..+-++|+.+++- ...       |        +++..|-.+-++-.+.. .-.+..   .
T Consensus       221 LYG~~p~~~~~~~~~Lkpv~~l~a~ii~ir~v~~G~~VGYg~~~~a~~~~~ia~v~iGYaDG~pr~~~~-~~~v~i---~  296 (367)
T cd00430         221 LYGLYPSPEVKSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYPRALSN-KGEVLI---R  296 (367)
T ss_pred             EECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCC-CCEEEE---C
T ss_conf             426888734455668621079999999989718979234899403587834899711122564510268-868999---9


Q ss_pred             CEEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             645998623336664552135-66778879899996887
Q gi|254780741|r  287 PYTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       287 ~~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      ...+.|.|..|+  |.+.-+. ..|+.++||.+.+..-.
T Consensus       297 g~~~~ivGrvsM--D~~~vdvt~~~~~~~Gd~V~l~G~~  333 (367)
T cd00430         297 GKRAPIVGRVCM--DQTMVDVTDIPDVKVGDEVVLFGRQ  333 (367)
T ss_pred             CEEEEEEEEEEC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             999256337505--5489988899889999999998189


No 34 
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.50  E-value=3.2e-10  Score=86.96  Aligned_cols=288  Identities=14%  Similarity=0.083  Sum_probs=163.2

Q ss_pred             EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----HHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECCCCC
Q ss_conf             97799999999999998533698699954105999----99999985187489807999989873-68801088537778
Q gi|254780741|r    8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAW----GMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNVAYK   82 (367)
Q Consensus         8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~----~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~~~~   82 (367)
                      ..|.+.|++|++.+++..  ++.+++=-+|||..=    .|.+.+.+ -++|-|++..|....++ |.....+++++...
T Consensus         5 eIdl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~-~~~faVa~~~Ea~~LR~~g~~~~IlvL~g~~~   81 (354)
T cd06827           5 TIDLAALRHNLRLVRELA--PNSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFFS   81 (354)
T ss_pred             EEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHC-CCEEEEEEHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             997999999999999768--998399999846364869999999856-99799948999999997399986699937899


Q ss_pred             HHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-------H
Q ss_conf             034788613886898567205999999861234561489963577443101245578643574278888743-------1
Q gi|254780741|r   83 DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-------I  155 (367)
Q Consensus        83 ~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-------~  155 (367)
                      ++|+..+.++....++.|.++++.+.+.....+.+|-|-|            +||  .+|+|+..+++.+..       .
T Consensus        82 ~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~vhlki------------DTG--M~RlG~~~~e~~~~~~~l~~~~~  147 (354)
T cd06827          82 ADELPLAAEYNLWTVVHSEEQLEWLEQAALSKPLNVWLKL------------DSG--MHRLGFSPEEYAAAYQRLKASPN  147 (354)
T ss_pred             HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             8999999984998999989999999862848995499997------------578--88578998999999999985899


Q ss_pred             CCCEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EE-EE
Q ss_conf             4960665305656-661478999999999898650887508753377666445568078999999875421650-45-30
Q gi|254780741|r  156 KNVNGLMFHNNCE-NKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ-IY-LE  232 (367)
Q Consensus       156 ~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~-iE  232 (367)
                      ..+.|+-.|..+- ..+...-.+.++...+....+......-|=+|=+..+...++.      ++-=..-|+.. .- ..
T Consensus       148 l~~~gi~SHfa~AD~~~~~~t~~Q~~~F~~~~~~~~~~~h~aNSa~~l~~~~~~~d~------VR~Gi~lYG~~P~~~~~  221 (354)
T cd06827         148 VASIVLMTHFACADEPDSPGTAKQLAIFEQATAGLPGPRSLANSAAILAWPEAHGDW------VRPGIMLYGASPFADKS  221 (354)
T ss_pred             CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCCCCE------ECCCEEEECCCCCCCCC
T ss_conf             856899840245788887899999999999971488666671788774595224772------34674615688776666


Q ss_pred             HHHHCCCCCEEEEEEEEEEECC--C------CCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf             0220145741888788786304--4------333--------43333565656640013455300024786459986233
Q gi|254780741|r  233 PGEAIVTNTTTLNTTVLDISEN--I------KNL--------VIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRS  296 (367)
Q Consensus       233 PGR~lv~~ag~lv~~V~~~K~~--~------~~~--------v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~  296 (367)
                      +-..=.-++..+-++|+.+|+-  |      ..|        +++..|-.+-++-.+... -.+..   ....+-|.|..
T Consensus       222 ~~~~~Lkpv~sl~a~v~~vk~v~~G~~VgYg~t~~a~~~~~iA~vpiGYaDG~~R~~s~~-~~V~i---~G~~~pivGrI  297 (354)
T cd06827         222 GADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYPRHAPSG-TPVLV---NGQRTPLVGRV  297 (354)
T ss_pred             CCCCCCEEEEEEEEEEEEEEECCCCCCEECCCCEECCCCCEEEEEEEECCCCCCCCCCCC-CEEEE---CCEEEEEECEE
T ss_conf             545585465899998457897699992316974113667359998304114635315799-78999---99997765675


Q ss_pred             CCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             36664552135-66778879899996887
Q gi|254780741|r  297 CLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       297 C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      |+  |.+.-+. ..|+.++||.+.+..-+
T Consensus       298 ~M--D~~~vDvt~~~~~~~GD~V~l~G~~  324 (354)
T cd06827         298 SM--DMLTVDLTDLPEAKVGDPVELWGKG  324 (354)
T ss_pred             EC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             05--3589988899778999999996899


No 35 
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.50  E-value=6.8e-11  Score=91.39  Aligned_cols=318  Identities=16%  Similarity=0.072  Sum_probs=175.8

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC---CEEEEECHHHHH-HHHCCCCC--CCE
Q ss_conf             888568977999999999999985336986999541059999999998518---748980799998-98736880--108
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM---DGTTSSSLYEVM-LGHEKFGG--ETH   75 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g---~g~dv~S~~E~~-la~~g~~~--~~i   75 (367)
                      |+||+.|+|.+.+++|+++++......++++.==+||--.+.+.+..-+.|   .|+-|+.+.|++ ++..|+.+  ..|
T Consensus         4 l~TPallvd~~~l~~Ni~~M~~~~~~~gv~lRPH~KTHKs~~ia~~Ql~aG~~a~git~atv~EAe~~a~~G~~~~~~di   83 (389)
T cd06817           4 LPTPALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDDI   83 (389)
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCEEE
T ss_conf             89973998199999999999999987599571151765169999999977998353897579999999985451662289


Q ss_pred             EE-CCCCCHH--HHHHHHCCC--CEEEECCCHHHHHHHHHHH-CCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             85-3777803--478861388--6898567205999999861-23456--148996357744310124557864357427
Q gi|254780741|r   76 AY-NVAYKDC--EIDAVLSNC--DTIIFNTVSQLNKFKDKAQ-KLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKC  147 (367)
Q Consensus        76 ~~-~~~~~~~--el~~a~~~~--~~i~iDs~~El~~i~~~a~-~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~  147 (367)
                      .+ +|...++  .+.++.+..  -.+.+||.+.++.+.+.+. ..+.+  |.|-||.+              ..|-|+..
T Consensus        84 l~a~pv~~~kl~rl~~L~~~~~~l~v~VD~~~~v~~L~~~~~~~~g~~l~V~Ievd~G--------------~~RtGv~~  149 (389)
T cd06817          84 LYGLPVPPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCG--------------THRAGVPP  149 (389)
T ss_pred             EECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC--------------CCCCCCCC
T ss_conf             9888578789999999855398089997479999999999886269825899997889--------------89678898


Q ss_pred             --HH---HHH----H-HHCCCEEEEECCCC--CCCCHHHHHHH--------HHHHHHHHHHCCCCCEEEEECCCCCCCC-
Q ss_conf             --88---887----4-31496066530565--66614789999--------9999989865088750875337766644-
Q gi|254780741|r  148 --KD---KIE----S-EIKNVNGLMFHNNC--ENKSFLCFSAM--------LKNIEKEFGHFITQIEWISLGGGIHFTD-  206 (367)
Q Consensus       148 --~~---~~~----~-~~~~i~Gih~H~gs--~~~~~~~~~~~--------l~~~~~~~~~~~~~l~~idiGGG~~~~~-  206 (367)
                        ++   +.+    . ...++.|||.|-|-  +..+.+..++.        ...+..+....+.....+-.||- |... 
T Consensus       150 ~~~~~~~l~~~i~~~~~~L~~~Gl~~y~Gh~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~vvs~G~T-pt~~~  228 (389)
T cd06817         150 ESEDAKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRKLTLSVGAT-PTAHA  228 (389)
T ss_pred             CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCC
T ss_conf             83999999999985678835778860487555789999999999999999999999988626998758998588-87220


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCC--------------CEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             -5568078999999875421650453002201457--------------4188878878630443334333356565664
Q gi|254780741|r  207 -KDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTN--------------TTTLNTTVLDISENIKNLVIVDSSVEAHVPD  271 (367)
Q Consensus       207 -~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~--------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~  271 (367)
                       ..... ...       ...+....+-||.|+.-|              |...+++|+.+. ..++++++|+|.-.+-.+
T Consensus       229 ~~~~~~-~~~-------~~~~~~tEl~pG~Yvf~D~~~~~~g~~~~~~~Al~VlatViS~~-p~~~~~ilDaG~Kals~D  299 (389)
T cd06817         229 AEALVL-IPA-------PSLSGLLELHAGNYPFYDLQQVATGLCSEEDIAVFVLAEVISVY-PKRNEALVNAGVLALSRE  299 (389)
T ss_pred             CCCCCC-CCC-------CCCCCCEEEECCCEECCCHHHHHCCCCCCCCEEEEEEEEEEEEC-CCCCEEEECCCHHHEECC
T ss_conf             355442-245-------55565149702464726887851699983212589999998553-899839976660011035


Q ss_pred             CCCCC----CCCCCCC-CCCCEEEEEECCCCCCCCEEEE---CCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE
Q ss_conf             00134----5530002-4786459986233366645521---35667788798999968870223243476899887799
Q gi|254780741|r  272 YLLYQ----ESATIYP-NTGPYTAMVCGRSCLAGDIFGE---FHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA  343 (367)
Q Consensus       272 ~~~~~----~~~~~~~-~~~~~~~~v~G~~C~~~D~l~~---~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v  343 (367)
                      .-...    ......+ -.+...+.+.+. -+++-++..   .....++++||.|-+..-=+ |    +..|.+  +..+
T Consensus       300 ~g~~~~~~g~~~~~~~~~~~~~~~~v~~l-seEHg~l~~~~~~~~~~~l~vGd~v~~iP~H~-C----~Tvnl~--~~~~  371 (389)
T cd06817         300 PSRIYGGFGRVIPWPGPIPGHPEWYLVRL-SQEHGILQPRDGDLDFKRLKVGSKVRIIPQHA-C----ITAAMF--PVYY  371 (389)
T ss_pred             CCCCCCCCCEECCCCCCCCCCCCEEEECC-CCCEEEEECCCCCCCCCCCCCCCEEEEECCCC-C----CCCCCC--CEEE
T ss_conf             67777885442167776467997288343-57515786178765567999888899971885-9----070058--8799


Q ss_pred             EEECCCCE
Q ss_conf             99679909
Q gi|254780741|r  344 VKNVDGTI  351 (367)
Q Consensus       344 ~~~~~g~~  351 (367)
                      ++++++.+
T Consensus       372 vv~~~~~v  379 (389)
T cd06817         372 VVDSGDIV  379 (389)
T ss_pred             EEECCCEE
T ss_conf             99798999


No 36 
>PRK00053 alr alanine racemase; Reviewed
Probab=99.47  E-value=3.2e-10  Score=86.92  Aligned_cols=295  Identities=16%  Similarity=0.131  Sum_probs=165.4

Q ss_pred             CEEE-EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEE
Q ss_conf             5689-779999999999999853369869995410599----99999998518-7489807999989873-688010885
Q gi|254780741|r    5 PYYL-IDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAY   77 (367)
Q Consensus         5 P~yv-~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~   77 (367)
                      |.|+ .|.+.|++|++.+++...  +.+++--+|||..    ..|.+.+.+.| +.|-|+++.|....++ |......++
T Consensus         3 ~t~~eIdl~al~~N~~~i~~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EAi~LR~~g~~~~Ilvl   80 (360)
T PRK00053          3 PAWAEIDLDALAHNLRQLRQLAG--SSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAPILLL   80 (360)
T ss_pred             CEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf             77999839999999999996589--9809999944225488999999999879799999189999999963999998997


Q ss_pred             CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf             3777803478861388689856720599999986123456148996357744310124557864357427888874----
Q gi|254780741|r   78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----  153 (367)
Q Consensus        78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----  153 (367)
                      ++.. ++++..+.++.-..++.|.++++.+.+.+...+.+|-|-|+            ||  .+|+|+..+++.+.    
T Consensus        81 ~~~~-~~~~~~~~~~~l~~~i~s~~~l~~~~~~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~~~~i  145 (360)
T PRK00053         81 GGFF-EADLPLIVAYDIETAVHSLEQLRALEKAALSAPLKVHLKVD------------TG--MHRLGVRPEEAEAALERL  145 (360)
T ss_pred             CCCC-HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEC------------CC--CCCCCCCHHHHHHHHHHH
T ss_conf             6999-79999999759889999899999999746158954999985------------89--874788878999999999


Q ss_pred             ---HHCCCEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             ---314960665305656-6614789999999998986508---875087533776664455680789999998754216
Q gi|254780741|r  154 ---EIKNVNGLMFHNNCE-NKSFLCFSAMLKNIEKEFGHFI---TQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYS  226 (367)
Q Consensus       154 ---~~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~~~~---~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~  226 (367)
                         ...+++|+--|..+. ..+.+...+.++...+....+.   .....-|=+|=+..+...+++      ++-=..-|+
T Consensus       146 ~~~~~l~~~gi~SHla~AD~~~~~~~~~Q~~~F~~~~~~l~~~~~~~h~aNSag~l~~~~~~~d~------VR~Gi~lYG  219 (360)
T PRK00053        146 RALPNLRLEGIMSHFATADEPDNSYTDEQLARFKAFLAGLPGKGKVRHLANSAAILRWPDLHFDW------VRPGIALYG  219 (360)
T ss_pred             HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHCCHHHHCCCCCCCCE------ECCCCEEEC
T ss_conf             85899827899741124788885899999999999998631079698642369877097334771------523801027


Q ss_pred             CEEE--EEHHHHCCCCCEEEEEEEEEEEC-CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCC-----CCEEEEE
Q ss_conf             5045--30022014574188878878630-44333433335------656566400134553000247-----8645998
Q gi|254780741|r  227 VQIY--LEPGEAIVTNTTTLNTTVLDISE-NIKNLVIVDSS------VEAHVPDYLLYQESATIYPNT-----GPYTAMV  292 (367)
Q Consensus       227 ~~l~--iEPGR~lv~~ag~lv~~V~~~K~-~~~~~v~vd~g------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v  292 (367)
                      ..=.  ......=.-++..+-++|+.+|+ .....+.-+..      +..-+-|..|..=++....+.     ....+-|
T Consensus       220 ~~P~~~~~~~~~~lkpv~sl~a~I~~i~~v~~G~~VgYg~t~~a~~~~~ia~v~iGYaDG~~R~ls~~~~v~i~G~~~pi  299 (360)
T PRK00053        220 YSPSGEDLGLDLGLKPAMTLKSSLIAVRELKAGEGVGYGGTFTAERDTRIAVVPIGYADGYPRNLPNGTPVLVNGRRVPI  299 (360)
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEECCCCCEECCCCCEEEEEEEECCCCCCCCCCCCCEEEECCEEEEE
T ss_conf             98775544545586456999998005785279882437993145778369997103145634314799689999999588


Q ss_pred             ECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             623336664552135-66778879899996887
Q gi|254780741|r  293 CGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       293 ~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      .|..|+  |.+.-+. ..|+.++||.+.+..-.
T Consensus       300 vGrv~M--D~~~vdvt~~~~~~~Gd~V~l~G~~  330 (360)
T PRK00053        300 VGRVSM--DQLTVDLTDIPQVKVGDEVTLWGEA  330 (360)
T ss_pred             ECEEEC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             478604--5389988899889999999998999


No 37 
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.45  E-value=3.8e-10  Score=86.46  Aligned_cols=319  Identities=13%  Similarity=0.079  Sum_probs=161.1

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH-HHHC-CEEEEECHHHHH-HHHCCCCCCCEEE-
Q ss_conf             88856897799999999999998533698699954105999999999-8518-748980799998-9873688010885-
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTL-NQYM-DGTTSSSLYEVM-LGHEKFGGETHAY-   77 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l-~~~g-~g~dv~S~~E~~-la~~g~~~~~i~~-   77 (367)
                      |+||+-|.|.+.+++|++++.....  +..+--+.|+-.++.+++.+ ...| .|+-|.++.|+. ++..|++  .|.. 
T Consensus         9 l~tP~lvvDld~l~~Ni~~m~~~a~--g~~iR~~~Ks~k~~~l~~~~l~~~g~~Gi~~~~~~EA~~la~~G~~--DILl~   84 (388)
T cd06813           9 LDAPFAFVDLDALDANAADLVRRAG--GKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFD--DILVA   84 (388)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHC--CCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC--CEEEC
T ss_conf             8997577539999999999999737--9981665040479999999986059870686559999999866998--18977


Q ss_pred             CCCCCHHHHHH---HHCCCC--EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCC-HHHH
Q ss_conf             37778034788---613886--89856720599999986123456148996357744310-12455786435742-7888
Q gi|254780741|r   78 NVAYKDCEIDA---VLSNCD--TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFI-LADPNRPFSRLGEK-CKDK  150 (367)
Q Consensus        78 ~~~~~~~el~~---a~~~~~--~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~-~~~~~~~~skfG~~-~~~~  150 (367)
                      +|...+.-++.   ..+...  .+.+||.+.++.+.+.++..+.+  |||+-++..+-+. ....|..  |=|+. .+++
T Consensus        85 ~p~v~~~~l~~l~~~~~~~~~i~~~VD~~~~l~~l~~aa~~~g~~--l~V~ieiD~g~~r~G~~~G~~--RsgV~~~~~a  160 (388)
T cd06813          85 YPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRVE--VRVCIDIDASLRFGGLHFGVR--RSPLHTPAQA  160 (388)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCC--CCCCCCHHHH
T ss_conf             888899999999854423771799972888999999999865995--699999717876667414767--6888998999


Q ss_pred             -------HHHHHCCCEEEEECCCC--CCCC--H---------HHHH--------HHHHHHHHHHHHCCCCCEEEEECC-C
Q ss_conf             -------87431496066530565--6661--4---------7899--------999999989865088750875337-7
Q gi|254780741|r  151 -------IESEIKNVNGLMFHNNC--ENKS--F---------LCFS--------AMLKNIEKEFGHFITQIEWISLGG-G  201 (367)
Q Consensus       151 -------~~~~~~~i~Gih~H~gs--~~~~--~---------~~~~--------~~l~~~~~~~~~~~~~l~~idiGG-G  201 (367)
                             .+.....+.||+.|-|.  +..+  .         ...+        .....+.+.+.+.+..++++|-|| |
T Consensus       161 ~~La~~I~~~p~L~~~Glm~Yeghia~~~d~~~~~~~~~~~~~~~~~~s~~e~~~r~~~~v~al~~~g~~~~~VngGGTg  240 (388)
T cd06813         161 LALAKAIAARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEGEDLEFVNGGGTG  240 (388)
T ss_pred             HHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf             99999986199974888972006556787655212456899999999999999999999999999619997589248976


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf             -66644556807899999987542165045300220145741888788786304433343333565656----6400134
Q gi|254780741|r  202 -IHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHV----PDYLLYQ  276 (367)
Q Consensus       202 -~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~----~~~~~~~  276 (367)
                       |.....+..+.++..- .-+   |....+=.+..+--.+|..+.+.|+.  .....++++++|-..-.    .+++..+
T Consensus       241 t~~~~~~~~~~tEv~aG-S~l---~~p~~fD~~~~~~~~PA~~~a~~Vv~--~P~p~~~t~~gGg~~aSg~~g~~~~p~p  314 (388)
T cd06813         241 SLESTAADAVVTEVTAG-SGL---YAPALFDHYRSFQPEPAAGFALPVVR--RPAPGIVTCLGGGYIASGPAGKDRLPVP  314 (388)
T ss_pred             CEECCCCCCCCEEECCC-CEE---ECCHHCCCCCCCCCCCEEEEECCEEE--CCCCCEEEEECCCEEECCCCCCCCCCCC
T ss_conf             64123568852165554-579---84112032000587760788724783--3599879992897054357777787741


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf             553000247864599862333666455213566778879899996887022324347689988779999679
Q gi|254780741|r  277 ESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD  348 (367)
Q Consensus       277 ~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~  348 (367)
                      ..    |.. ..-..+-|.. +....+ .......+++||+|.|-.+=+=  ..-.+|     ..+++++++
T Consensus       315 ~~----p~g-~~~~~~eG~~-e~q~~l-~~~~~~~l~vGD~v~~rp~~~~--~~~~~f-----~~l~vv~gg  372 (388)
T cd06813         315 WL----PAG-LKLLPLEGAG-EVQTPL-TGPAAERLGIGDPVWFRHAKAG--ELCERF-----NELHLVRGG  372 (388)
T ss_pred             CC----CCC-CCCCCCCCCC-CCCCEE-ECCCCCCCCCCCEEEEECCCCC--HHHHHC-----CEEEEEECC
T ss_conf             17----997-6544555787-642313-1587776999998999589733--666612-----869999899


No 38 
>PRK13340 alanine racemase; Reviewed
Probab=99.36  E-value=3.5e-09  Score=80.10  Aligned_cols=290  Identities=16%  Similarity=0.063  Sum_probs=161.4

Q ss_pred             EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCCC
Q ss_conf             9779999999999999853369869995410599----99999998518-748980799998987-36880108853777
Q gi|254780741|r    8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVAY   81 (367)
Q Consensus         8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~~   81 (367)
                      =.|.+.|+.|++.+++... ++++++=-+|||..    ..|.+.+.+.| ++|-|+++.|....+ .|......++++. 
T Consensus        43 EIdL~al~~N~~~ir~~l~-~~~ki~AVVKAnAYGhG~~~va~~l~~~G~~~faVA~~~EAi~LR~~gi~~pIlvl~~~-  120 (404)
T PRK13340         43 EISRGALDFNIKKFKRRLA-ANSKVCAVMKADAYGHGIEGVMPTIIENNVPCIAIASNEEARRVRELGFTGPLLRVRSA-  120 (404)
T ss_pred             EECHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEECC-
T ss_conf             9979999999999998569-99989999911102076999999999879999999499999999965999997999188-


Q ss_pred             CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH---HHH------
Q ss_conf             80347886138868985672059999998612345614899635774431012455786435742788---887------
Q gi|254780741|r   82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD---KIE------  152 (367)
Q Consensus        82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~---~~~------  152 (367)
                      .++++..+.++.-..++.|.++++.+.+.++..++++.+-+.          +++ ...+|+|+..++   +.+      
T Consensus       121 ~~~~~~~~~~~~l~~~I~s~~~l~~l~~~a~~~~~~~~vHlk----------iDT-tGM~RlG~~~~~~~~~~~~~~i~~  189 (404)
T PRK13340        121 EPAEIEQALRYRLEELIGDDEQAKLLANIAKKNGKPIDIHLA----------LNS-GGMGRNGLDPSTFRGAWEAVRIAT  189 (404)
T ss_pred             CHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCEEEEEE----------ECC-CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             989999999769925999799999999999971995479999----------816-886667988102899999999960


Q ss_pred             HHHCCCEEEEECCCCCCCCH-----HHHHHHHHHHHHHHHHCCCCC---EEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             43149606653056566614-----789999999998986508875---0875337766644556807899999987542
Q gi|254780741|r  153 SEIKNVNGLMFHNNCENKSF-----LCFSAMLKNIEKEFGHFITQI---EWISLGGGIHFTDKDYPVKDFCQRLKEFSEK  224 (367)
Q Consensus       153 ~~~~~i~Gih~H~gs~~~~~-----~~~~~~l~~~~~~~~~~~~~l---~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~  224 (367)
                      ....+++|+--|..+-..+.     +.|.+..+.+.+.. ......   ..-|=+|=+..+...+|      .++-=..-
T Consensus       190 ~~~l~v~Gi~SHfa~AD~~~~~~q~~~F~~~~~~l~~~~-~~~~~~~~~H~aNSagil~~p~~~~D------~VRpGi~L  262 (404)
T PRK13340        190 LPSLGIVGIMTHFPNEDAGEVRWKLARFDQATQGLIGEA-GLKREKITLHVANSYATLNVPEAHLD------MVRPGGVL  262 (404)
T ss_pred             CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCHHHHCCCHHHCC------CCCCCCEE
T ss_conf             899777899820488999715999999999998678875-26788653998374887609331067------12677056


Q ss_pred             CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCC-----CEEEEE
Q ss_conf             165045300220145741888788786304-433343------33356565664001345530002478-----645998
Q gi|254780741|r  225 YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVI------VDSSVEAHVPDYLLYQESATIYPNTG-----PYTAMV  292 (367)
Q Consensus       225 ~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~------vd~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v  292 (367)
                      |+    ..|...=.-+++.+-++|..+|.- ....+.      .+..+..-+-|..|..=++....+.+     ...+.|
T Consensus       263 YG----~~P~~~~Lkpvmsl~a~I~~ir~v~~G~~VgYG~t~~a~~~~~iAtvpiGYADG~~R~lsn~g~VlI~G~~~pi  338 (404)
T PRK13340        263 YG----DSPANTPYKRIMTFKSRIASLNTLPKGSTVGYDRTFTLERDSRLANLPVGYADGYPRHAPNGGPVLINGQRAPV  338 (404)
T ss_pred             EC----CCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCEEEEE
T ss_conf             68----89887787854899988778887079983144654024787489997211224524114798089999999125


Q ss_pred             ECCCCCCCCEEEECC-CCCCCCCCCEEEEECC
Q ss_conf             623336664552135-6677887989999688
Q gi|254780741|r  293 CGRSCLAGDIFGEFH-FEKPVKIGDRISFEDV  323 (367)
Q Consensus       293 ~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~  323 (367)
                      +|..|+  |.+.-+. ..|+.++||.+.+...
T Consensus       339 vGrI~M--D~~mVDvt~~~~v~~GD~V~L~G~  368 (404)
T PRK13340        339 VGRVSM--NTLMVDVTDCPNVGPGDEVVLFGK  368 (404)
T ss_pred             EEEEEC--CEEEEECCCCCCCCCCCEEEEECC
T ss_conf             618804--348998889988999999999789


No 39 
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.34  E-value=1.8e-08  Score=75.49  Aligned_cols=272  Identities=17%  Similarity=0.132  Sum_probs=163.6

Q ss_pred             EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCCC
Q ss_conf             9779999999999999853369869995410599----99999998518-748980799998987-36880108853777
Q gi|254780741|r    8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVAY   81 (367)
Q Consensus         8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~~   81 (367)
                      -.|.+.|+.|++.++.... ++++++=-+|||..    ..|.+.+.+.| +.+-|++..|...-+ +|......+++|. 
T Consensus       466 EIdL~Ai~~N~~~~r~~l~-p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~Ea~~LR~~Gi~~pIlvl~~~-  543 (824)
T PRK11930        466 EINLDAIVHNLNYYRSKLK-PETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVADEGSELRKAGITLPIMVMNPE-  543 (824)
T ss_pred             EEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCC-
T ss_conf             9988999999999997479-99769999963446634999999999849999999259999999974999987993486-


Q ss_pred             CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf             80347886138868985672059999998612345---6148996357744310124557864357427888874-----
Q gi|254780741|r   82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK---KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-----  153 (367)
Q Consensus        82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~---~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-----  153 (367)
                       ..++..++++.-...+-|+++++.+.+.++..+.   +|-|-|            +||  .+|+|+..+++.+.     
T Consensus       544 -~~~~~~~~~~~l~~~v~s~~~l~~l~~~~~~~~~~~~~vHlki------------DTG--M~RlGf~~~e~~~l~~~l~  608 (824)
T PRK11930        544 -LTSFKTIIDYKLEPEVYSFHLLDALIKEAEKKGLTNFPIHIKI------------DTG--MHRLGFEPEDIPELIERLK  608 (824)
T ss_pred             -HHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHH
T ss_conf             -6779999980891107879999999999997299974089997------------599--9978599899999999998


Q ss_pred             --HHCCCEEEEECCCC-CCCCHHHH-HHHHHHHHHH---HHHCCC-------------------CCEEEEECCCCCCCCC
Q ss_conf             --31496066530565-66614789-9999999989---865088-------------------7508753377666445
Q gi|254780741|r  154 --EIKNVNGLMFHNNC-ENKSFLCF-SAMLKNIEKE---FGHFIT-------------------QIEWISLGGGIHFTDK  207 (367)
Q Consensus       154 --~~~~i~Gih~H~gs-~~~~~~~~-~~~l~~~~~~---~~~~~~-------------------~l~~idiGGG~~~~~~  207 (367)
                        ....++|+--|.-+ ...+.+.| .+.++...+.   +.+.+.                   .++++-+|-|++.-.+
T Consensus       609 ~~~~l~~~gi~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSagi~~~p~~~~DmVR~Gi~LYG~~p  688 (824)
T PRK11930        609 KQSAVIVRSVFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSGIERFPGAQYDMVRLGIGLYGVSA  688 (824)
T ss_pred             HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCEEEECCEEECCCC
T ss_conf             28998553667458888999985799999999999999998716887627860789886598446986852835168698


Q ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-------C-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5680789999998754216504530022014574188878878630-------4-4333433335656566400134553
Q gi|254780741|r  208 DYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE-------N-IKNLVIVDSSVEAHVPDYLLYQESA  279 (367)
Q Consensus       208 ~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-------~-~~~~v~vd~g~~~~~~~~~~~~~~~  279 (367)
                      .                        +...=.-+++.+-++|..+|+       + +.+|..-.. +..-+-|..|-.=++
T Consensus       689 ~------------------------~~~~~Lkpv~sl~s~I~~ik~v~~Ge~VgYg~t~~a~~~-~~IAtipiGYADG~~  743 (824)
T PRK11930        689 S------------------------GNQIKLRNVSTLKTTILQIRDIPKGDTVGYSRKGRVEKP-SRIATIPIGYADGLN  743 (824)
T ss_pred             C------------------------CCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEECCCC-CEEEEEEECCCCCCC
T ss_conf             8------------------------877796660899999999998385698679995582899-689999523102766


Q ss_pred             CCCCCC------CCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECC
Q ss_conf             000247------86459986233366645521356677887989999688
Q gi|254780741|r  280 TIYPNT------GPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDV  323 (367)
Q Consensus       280 ~~~~~~------~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~  323 (367)
                      ....+.      ..+.+-|+|..|+  |.+.-+...-+.++||.+++..-
T Consensus       744 R~lsn~~g~Vli~G~~~pivGrIcM--D~~mvDvt~i~~~~GDeV~l~G~  791 (824)
T PRK11930        744 RHLGNGVGYVLVNGKKAPIVGNICM--DMCMIDVTDIHANEGDKVIIFGE  791 (824)
T ss_pred             CCCCCCCCEEEECCEEEEEEEEEEC--CEEEEECCCCCCCCCCEEEEECC
T ss_conf             2257998389999999225648733--56999888998999999999899


No 40 
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.34  E-value=1.8e-08  Score=75.37  Aligned_cols=283  Identities=13%  Similarity=0.084  Sum_probs=156.5

Q ss_pred             EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECCCCC
Q ss_conf             779999999999999853369869995410599----99999998518-7489807999989873-68801088537778
Q gi|254780741|r    9 IDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNVAYK   82 (367)
Q Consensus         9 ~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~~~~   82 (367)
                      .|.+.|+.|++.++.... ++.+++--+|||..    ..|.+.+.+.| ++|-|+++.|....++ |.....+++++ ..
T Consensus         6 Idl~al~~N~~~ir~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~gv~~faVa~~~EA~~LR~~g~~~~Il~l~~-~~   83 (365)
T cd06826           6 ISTGAFENNIKLLKKLLG-GNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRVRT-AT   83 (365)
T ss_pred             EEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEECC-CC
T ss_conf             809999999999996389-9997999995620228789999999987999999687999999996599998799868-89


Q ss_pred             HHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH---HH------HH
Q ss_conf             0347886138868985672059999998612345614899635774431012455786435742788---88------74
Q gi|254780741|r   83 DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD---KI------ES  153 (367)
Q Consensus        83 ~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~---~~------~~  153 (367)
                      ++|+..+.++....++-|.++++.+.++++..+.++.+-+.          +++ ...+|+|+...+   +.      +.
T Consensus        84 ~~e~~~~~~~~l~~~i~s~~~~~~l~~~~~~~~~~~~vhlk----------iDT-~GM~RlG~~~~~~~~~~~~~~~~~~  152 (365)
T cd06826          84 PSEIEDALAYNIEELIGSLDQAEQIDSLAKRHGKTLPVHLA----------LNS-GGMSRNGLELSTAQGKEDAVAIATL  152 (365)
T ss_pred             HHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCEEEEE----------ECC-CCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             79999999706860998199999999999870998338999----------726-9977578673407899999999738


Q ss_pred             HHCCCEEEEECCCCCCCCH-----HHHHHHHHHHHHHHHHCCCC-----CEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             3149606653056566614-----78999999999898650887-----5087533776664455680789999998754
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSF-----LCFSAMLKNIEKEFGHFITQ-----IEWISLGGGIHFTDKDYPVKDFCQRLKEFSE  223 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~-----~~~~~~l~~~~~~~~~~~~~-----l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~  223 (367)
                      ....+.|+..|..+...+.     ..|.+..+.+   +.+....     +..-|=+|-+..+...++.      ++-=..
T Consensus       153 ~~l~i~Gi~SH~a~ad~~~~~~~~~~f~~~~~~l---~~~~~~~~~~~~~H~anS~~~l~~~~~~~d~------vR~Gi~  223 (365)
T cd06826         153 PNLKIVGIMTHFPVEDEDDVRAKLARFNEDTAWL---ISNAKLKREKITLHAANSFATLNVPEAHLDM------VRPGGI  223 (365)
T ss_pred             CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCCCEEEECCCHHHHCCCCCCCCC------CCCCEE
T ss_conf             9985799983347889874099999999999999---9862677775618861436765594114784------557846


Q ss_pred             HCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-CCCC---------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             216504530022014574188878878630-4433---------------343333565656640013455300024786
Q gi|254780741|r  224 KYSVQIYLEPGEAIVTNTTTLNTTVLDISE-NIKN---------------LVIVDSSVEAHVPDYLLYQESATIYPNTGP  287 (367)
Q Consensus       224 ~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-~~~~---------------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~  287 (367)
                      -|+.    .|-..=.-++..+-++|+.+|. ....               .+++..|-.+-++-.+... -.+.   -..
T Consensus       224 lYG~----~p~~~~lkpv~sl~s~I~~ir~l~~Ge~VGYg~~~~a~~~~~ia~v~iGYaDG~~r~~sn~-~~V~---i~G  295 (365)
T cd06826         224 LYGD----TPPSPEYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGYRRSFSNK-AHVL---ING  295 (365)
T ss_pred             EECC----CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC-CEEE---ECC
T ss_conf             3786----9777777834999999966478389997666862543898289997043325755002799-6899---999


Q ss_pred             EEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECC
Q ss_conf             45998623336664552135-6677887989999688
Q gi|254780741|r  288 YTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDV  323 (367)
Q Consensus       288 ~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~  323 (367)
                      ..+-|.|..|+  |.+.-+. ..|+.++||.+++..-
T Consensus       296 ~~~pivGrV~M--D~~~vDvt~~~~v~~Gd~v~l~G~  330 (365)
T cd06826         296 QRVPVVGKVSM--NTVMVDVTDIPGVKAGDEVVLFGK  330 (365)
T ss_pred             EEEEEECEEEC--CEEEEECCCCCCCCCCCEEEEECC
T ss_conf             99357177722--268995678878999999999747


No 41 
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.24  E-value=4.5e-08  Score=72.76  Aligned_cols=315  Identities=17%  Similarity=0.153  Sum_probs=173.7

Q ss_pred             CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-
Q ss_conf             9888568977999999999999985336986999541059999999998518-74898079999898-73688010885-
Q gi|254780741|r    1 MIKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-   77 (367)
Q Consensus         1 ~i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-   77 (367)
                      .|+||+.+.|+++++.|+.+++......+.++.-=+|+-.+|.+.+..-+.| .|+-|+.+.|.+.. .+|+  +.|.+ 
T Consensus        15 ~l~tP~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi--~dIl~a   92 (368)
T COG3616          15 DLDTPAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGI--DDILLA   92 (368)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHCCCC--CCEEEE
T ss_conf             779964311288776369999986054483650123433587999999853773157610678899871586--525871


Q ss_pred             CC-CCC-HHH-HHHHHCCCC--EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--
Q ss_conf             37-778-034-788613886--89856720599999986123456148996357744310124557864357427888--
Q gi|254780741|r   78 NV-AYK-DCE-IDAVLSNCD--TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK--  150 (367)
Q Consensus        78 ~~-~~~-~~e-l~~a~~~~~--~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~--  150 (367)
                      +| +.. ... |.+......  .+.+||.+.++.+.+.+.+.+..+  ||+-.++.+          ..|.|....+.  
T Consensus        93 ~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl--~v~iE~D~G----------~~R~Gv~t~~~~~  160 (368)
T COG3616          93 YPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPL--RVLIEIDSG----------LHRSGVRTPEVAE  160 (368)
T ss_pred             CCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCE--EEEEEECCC----------CCCCCCCCHHHHH
T ss_conf             5887166899999851899842999578899999999987549974--699995788----------8866757868999


Q ss_pred             -H-----HHHHCCCEEEEECCCCCCCCHHHHHHHH-HHHHHHHHHCCCCCEEEEECCCC--CCCC----------CCCCC
Q ss_conf             -8-----7431496066530565666147899999-99998986508875087533776--6644----------55680
Q gi|254780741|r  151 -I-----ESEIKNVNGLMFHNNCENKSFLCFSAML-KNIEKEFGHFITQIEWISLGGGI--HFTD----------KDYPV  211 (367)
Q Consensus       151 -~-----~~~~~~i~Gih~H~gs~~~~~~~~~~~l-~~~~~~~~~~~~~l~~idiGGG~--~~~~----------~~~~~  211 (367)
                       +     +.....+.|+.+|-|.-........... ..+..+.+..+....++--||==  ....          ..|..
T Consensus       161 ~La~~~~~~~~l~~~Gv~~y~gh~~~~~~~~~~~~~~~a~~~~~~~g~~~~~vt~ggtp~~~~~~~~~~~~e~r~G~Y~~  240 (368)
T COG3616         161 ALAAEIAAAPGLRLAGVMTYPGHSYGPGSEVAAAERVHAAALLGAVGRAAPVLTSGGTPTAELVAGLSSTTELRAGNYVF  240 (368)
T ss_pred             HHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHCCCCCCEEECCCCEEE
T ss_conf             99976520466078555303663467765333333556899740568766345327887322213577513651673342


Q ss_pred             HHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-E
Q ss_conf             789999998754216504530022014574188878878630443334333356565664001345530002478645-9
Q gi|254780741|r  212 KDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYT-A  290 (367)
Q Consensus       212 ~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~-~  290 (367)
                      .+............++             ++...+.|++.-  ...++++|+|.-..-++....   ..........+ .
T Consensus       241 ~D~~~~~~g~~s~~d~-------------Al~v~atvis~p--~~~~aivdaG~k~ls~D~~~~---~~~~~~~~g~~~~  302 (368)
T COG3616         241 NDLVQVAFGIPSLSDG-------------ALTVAATVISHP--TPGRAIVDAGSKALSRDRPAA---RTGFGLGGGYEAA  302 (368)
T ss_pred             HHHHHHHHCCCCCCCC-------------EEEEEEEEEECC--CCCEEECCCCCCCCCCCCCCC---CCCEEECCCCHHH
T ss_conf             1366666267751013-------------047767999648--886564057861000567767---6642440685432


Q ss_pred             EEECC----CCCCCCEEEEC-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf             98623----33666455213-566778879899996887022324347689988779999679909999738
Q gi|254780741|r  291 MVCGR----SCLAGDIFGEF-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREF  357 (367)
Q Consensus       291 ~v~G~----~C~~~D~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e  357 (367)
                      .+.++    +-+.+=++... .....+++||++-|...=+=     ..||.+  +.+.++++++   +++++
T Consensus       303 ~~~~~e~~~ln~ehg~~~~~~~~~~~l~vGd~v~i~PnH~c-----~t~~~f--~~~~v~~g~~---vi~~w  364 (368)
T COG3616         303 RVAAPEVMRLNEEHGTLSVQDPPADLLKVGDRVRLRPNHSC-----ATFNLF--DDLHVVRGGG---VVDRW  364 (368)
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCHH-----HHHHHC--CEEEEEECCC---EEEEE
T ss_conf             04632235613012699536776666888776996079624-----666634--7389985791---58886


No 42 
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.23  E-value=7.7e-08  Score=71.24  Aligned_cols=289  Identities=16%  Similarity=0.097  Sum_probs=157.9

Q ss_pred             EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCCCC
Q ss_conf             779999999999999853369869995410599----99999998518-748980799998987-368801088537778
Q gi|254780741|r    9 IDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVAYK   82 (367)
Q Consensus         9 ~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~~~   82 (367)
                      .|.+.|++|++.+++.. .++.+++=.+|||..    ..|.+.+.+.| ++|-|+++.|....+ .|......++++ ..
T Consensus         6 Idl~al~~N~~~i~~~~-~~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~f~Va~~~EA~~LR~~g~~~~Ilvl~~-~~   83 (368)
T cd06825           6 IDLSALEHNVKEIKRLL-PSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGEILILGY-TP   83 (368)
T ss_pred             EEHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC-CC
T ss_conf             86999999999999747-99987999995642668899999999986989999919999999996299999899769-98


Q ss_pred             HHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------HHC
Q ss_conf             03478861388689856720599999986123456148996357744310124557864357427888874------314
Q gi|254780741|r   83 DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------EIK  156 (367)
Q Consensus        83 ~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------~~~  156 (367)
                      ++++..+.+.....++-|+++++.+.+..  .+.+|-|-|            +||  .+|+|+..+++...      ...
T Consensus        84 ~~~~~~~~~~~l~~~i~s~~~~~~l~~~~--~~~~vhLki------------DTG--M~RlG~~~~e~~~~~~~~~~~~l  147 (368)
T cd06825          84 PVRAKELKKYSLTQTLISEAYAEELSKYA--VNIKVHLKV------------DTG--MHRLGESPEDIDSILAIYRLKNL  147 (368)
T ss_pred             HHHHHHHHHCCCEEEECCHHHHHHHHHCC--CCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             78899999759989999699999997279--986079997------------079--98678887899999999867999


Q ss_pred             CCEEEEECCCCCC-CCHH--HH-HHHHHHHHH---HHHHCCCCCEE---EEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             9606653056566-6147--89-999999998---98650887508---7533776664455680789999998754216
Q gi|254780741|r  157 NVNGLMFHNNCEN-KSFL--CF-SAMLKNIEK---EFGHFITQIEW---ISLGGGIHFTDKDYPVKDFCQRLKEFSEKYS  226 (367)
Q Consensus       157 ~i~Gih~H~gs~~-~~~~--~~-~~~l~~~~~---~~~~~~~~l~~---idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~  226 (367)
                      +++|+--|..+-. .+.+  .+ ++.++...+   .+.+.+.....   -|=+|=+..+...+++      ++-=..-|+
T Consensus       148 ~~~gi~SH~a~AD~~~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~h~aNSagil~~p~~~~d~------vRpGi~LYG  221 (368)
T cd06825         148 KVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGIEVGKIHIQSSYGILNYPDLKYDY------VRPGILLYG  221 (368)
T ss_pred             CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCCCCCE------ECCCEEEEC
T ss_conf             54789853002566898335899999999999999998748984548742717876395024881------267346267


Q ss_pred             CE--EEEE-HHHHCCCCCEEEEEEEEEEEC--CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCEE
Q ss_conf             50--4530-022014574188878878630--44------333433335656566400134553000247------8645
Q gi|254780741|r  227 VQ--IYLE-PGEAIVTNTTTLNTTVLDISE--NI------KNLVIVDSSVEAHVPDYLLYQESATIYPNT------GPYT  289 (367)
Q Consensus       227 ~~--l~iE-PGR~lv~~ag~lv~~V~~~K~--~~------~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~------~~~~  289 (367)
                      ..  ---. +...=.-+++.+-++|+.+|+  .|      ..|. .+..+..-+-|..|..=++....+.      ....
T Consensus       222 ~~~~~~~~~~~~~~LkPvmsl~a~I~~ir~v~~G~~VgYg~~~~-a~~~~~ia~v~iGYaDG~~R~lsn~~~~V~i~G~~  300 (368)
T cd06825         222 VLSDPNDPTKLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFV-ASRTTRIATVSIGYADGYPRSLSNQKAYVLINGKR  300 (368)
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEECCCCCCC-CCCCCEEEEEEEECCCCCCHHHCCCCCEEEECCEE
T ss_conf             88885434445668514699999954542069978453686334-67872799981141156342333797489999999


Q ss_pred             EEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             998623336664552135-66778879899996887
Q gi|254780741|r  290 AMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       290 ~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      +-|+|..|+  |.+.-+. ..|+.++||.+.+....
T Consensus       301 ~pivGrV~M--D~~~vDvt~~~~v~~GD~V~l~G~~  334 (368)
T cd06825         301 APIIGNICM--DQLMVDVTDIPEVKEGDTATLIGQD  334 (368)
T ss_pred             EEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             577488714--5489989899889999999998289


No 43 
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.22  E-value=6.5e-08  Score=71.75  Aligned_cols=292  Identities=19%  Similarity=0.184  Sum_probs=166.1

Q ss_pred             CCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCC-CCE
Q ss_conf             8568-9779999999999999853369869995410599----99999998518-7489807999989873-6880-108
Q gi|254780741|r    4 TPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGG-ETH   75 (367)
Q Consensus         4 TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~-~~i   75 (367)
                      .|.+ ..|.+.|+.|++.+++....  .+++=-+|||..    ..|.+.+.+.| ++|-|+++.|...-++ |... ...
T Consensus         3 ~~~~~~Idl~Al~~N~~~i~~~~~~--~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~Il   80 (360)
T COG0787           3 RPATAEIDLGALRHNLRALRELAGP--AKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPIL   80 (360)
T ss_pred             CCEEEEEEHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEE
T ss_conf             7779998689999999999974788--57999996543677899999999985999899862999999997188899789


Q ss_pred             EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-
Q ss_conf             853777803478861388689856720599999986123-456148996357744310124557864357427888874-
Q gi|254780741|r   76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKL-HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-  153 (367)
Q Consensus        76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~-~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-  153 (367)
                      ++++...+++...+.++....++.|++|++.+...+... ..+|-|-+            ++|  .+|+|+..++.... 
T Consensus        81 vL~g~~~~~~~~~~~~~~l~~~v~s~~ql~~l~~~~~~~~~l~vhLki------------DTG--M~RlG~~~~~~~~~~  146 (360)
T COG0787          81 VLEGFFPAEELELAAAYNLTPVVNSLEQLEALKNAALKNKPLKVHLKI------------DTG--MNRLGLRPEEAVALA  146 (360)
T ss_pred             EECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEE------------CCC--CCCCCCCHHHHHHHH
T ss_conf             973758835678999869738889999999999755106962799997------------789--875798848999999


Q ss_pred             ------HHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             ------31496066530565666-147899999999989865088750875337766-6445568078999999875421
Q gi|254780741|r  154 ------EIKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFITQIEWISLGGGIH-FTDKDYPVKDFCQRLKEFSEKY  225 (367)
Q Consensus       154 ------~~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~-~~~~~~~~~~~~~~i~~~~~~~  225 (367)
                            ....+.|+--|..+--. +.....+.++........+-.....+.=.+|+. .+...+++      ++-=..-|
T Consensus       147 ~~~~~~~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~~~~~~~~~~~~h~aNSa~~~~~~~~~~d~------vRpGi~lY  220 (360)
T COG0787         147 IDLIALKNLDLEGIFSHFACADEPEDPYTLKQLERFNLAKQGLPGELSHLANSAGLLLGPDYHFDM------VRPGIALY  220 (360)
T ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCCCCCE------EECCEEEE
T ss_conf             987632487559997156778888982789999999998646987537885558770686422514------64001322


Q ss_pred             CCEEEEEHHH---HCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC-----CEEE
Q ss_conf             6504530022---0145741888788786304-4333433335656------5664001345530002478-----6459
Q gi|254780741|r  226 SVQIYLEPGE---AIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEA------HVPDYLLYQESATIYPNTG-----PYTA  290 (367)
Q Consensus       226 ~~~l~iEPGR---~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~------~~~~~~~~~~~~~~~~~~~-----~~~~  290 (367)
                      +    +.|=.   .=.-+++.+-++|+++|+- -...|.-.+.+..      -+-|..|-.=++...++..     ...+
T Consensus       221 G----~~P~~~~~~~lkpvmtl~a~ii~vr~v~~Ge~VgYG~t~~a~~~t~iavv~iGYaDG~pR~~~~~~~Vli~G~r~  296 (360)
T COG0787         221 G----LSPSGGLDNGLKPVMTLKARIIQVRTVPAGETVGYGATFTAERDTRIAVVAIGYADGYPRALSNGTPVLINGKRV  296 (360)
T ss_pred             C----CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHCCCCCEEEECCEEE
T ss_conf             6----885656677853107999988899985799952477079825882689986334577420168997799999981


Q ss_pred             EEECCCCCCCCEEEECC-CCCCCCCCCEEEEECC
Q ss_conf             98623336664552135-6677887989999688
Q gi|254780741|r  291 MVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDV  323 (367)
Q Consensus       291 ~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~  323 (367)
                      -++|..|+  |.+.-+. ..|..++||.+.+..-
T Consensus       297 pivGrVsM--D~~~Vdl~~~~~~~~Gd~V~L~G~  328 (360)
T COG0787         297 PIVGRVSM--DMIMVDLTDLPQVKVGDEVELFGE  328 (360)
T ss_pred             EEEEEEEC--EEEEEECCCCCCCCCCCEEEEECC
T ss_conf             57638842--069998899877899999999899


No 44 
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.22  E-value=5.9e-08  Score=72.01  Aligned_cols=306  Identities=13%  Similarity=0.034  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-CCCCCHH---HHH
Q ss_conf             999999999985336986999541059999999998518-74898079999898-73688010885-3777803---478
Q gi|254780741|r   14 LLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-NVAYKDC---EID   87 (367)
Q Consensus        14 i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~~~~~~~---el~   87 (367)
                      +++|+++++......++++.=-+||--.+.+.+..-+.| .|+-|+++.|++.. ..|+  +.|.+ +|...+.   .+.
T Consensus         2 le~Ni~~m~~~~~~~g~~lRPH~KThK~~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G~--~dIl~a~pi~~~~~l~rl~   79 (345)
T cd07376           2 LEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGV--KDILMAYPLVGPAAIARLA   79 (345)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHH
T ss_conf             78999999999997699766775000489999999867997099946999999997699--8389966889989999999


Q ss_pred             HHHCCCC--EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH---------HHHHHHC
Q ss_conf             8613886--8985672059999998612345614899635774431012455786435742788---------8874314
Q gi|254780741|r   88 AVLSNCD--TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD---------KIESEIK  156 (367)
Q Consensus        88 ~a~~~~~--~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~---------~~~~~~~  156 (367)
                      ++.+...  .+.+||.+.++.+.+.++..+.++.+.|.-+.+            ..|-|+...+         +.+....
T Consensus        80 ~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~~~V~ievD~G------------~~R~Gv~~~~~~~l~l~~~i~~~~~l  147 (345)
T cd07376          80 GLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG------------GHRSGVRPEEAAALALADAVQASPGL  147 (345)
T ss_pred             HHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCC------------CCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf             986349838999708999999999998659827899997889------------98588888779999999998539991


Q ss_pred             CCEEEEECCCC-C-CCCHHHHHHH----HHHHHHHHH--HCCCCCEEEEECCC-CC-CCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             96066530565-6-6614789999----999998986--50887508753377-66-64455680789999998754216
Q gi|254780741|r  157 NVNGLMFHNNC-E-NKSFLCFSAM----LKNIEKEFG--HFITQIEWISLGGG-IH-FTDKDYPVKDFCQRLKEFSEKYS  226 (367)
Q Consensus       157 ~i~Gih~H~gs-~-~~~~~~~~~~----l~~~~~~~~--~~~~~l~~idiGGG-~~-~~~~~~~~~~~~~~i~~~~~~~~  226 (367)
                      ++.||+.|-|. + ..+.+..++.    +..+.....  +.+.....+..||= .. .......+.++..----+.   |
T Consensus       148 ~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vs~GgTpt~~~~~~~~~~tEl~~G~yvf~---D  224 (345)
T cd07376         148 RLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAERGLACPTVSGGGTPTYQLTAGDRAVTELRAGSYVFM---D  224 (345)
T ss_pred             EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEEECCCEEEEC---C
T ss_conf             8989997471206999989999999999999999999986499988895578887410336887328746348964---2


Q ss_pred             CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE--
Q ss_conf             504530022014574188878878630443334333356565664001345530002478645998623336664552--
Q gi|254780741|r  227 VQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFG--  304 (367)
Q Consensus       227 ~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~--  304 (367)
                      . -....|-.=-.++...+++|+..- ....++++|+|.-.+-.+... .......+.+ .  ..+.+.+ ++.-.+.  
T Consensus       225 ~-~~~~~~~~~~~~aa~~v~~Vis~~-~~~~~~~vd~G~kals~d~~~-~~~~~~~~~p-~--~~~~~~s-~ehg~~~~~  297 (345)
T cd07376         225 T-GFDTLGACAQRPAAFRVTTVISRP-APTGRAVLDAGWKASSADTAF-IGGGAVLGRP-E--LRAVLLS-EEHEGRSEP  297 (345)
T ss_pred             H-HHCCCCCCCCCCEEEEEEEEEEEC-CCCCEEEECCCCCCCCCCCCC-CCCCCCCCCC-C--CEEEEEC-CCCCEEECC
T ss_conf             1-320136898433008998666522-888628988622222331356-7888755897-7--0255301-575304515


Q ss_pred             -ECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf             -13566778879899996887022324347689988779999679909
Q gi|254780741|r  305 -EFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTI  351 (367)
Q Consensus       305 -~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~  351 (367)
                       ......++++||.|.|...=+ |.    .+|.+  +..++++ +|.+
T Consensus       298 ~~~~~~~~l~vGd~v~liP~H~-C~----t~~~~--~~~~vv~-~~~v  337 (345)
T cd07376         298 LNTPDLDDLPIGDRVFLVPNHA-CE----TVALH--DELYVVE-GGRV  337 (345)
T ss_pred             CCCCCCCCCCCCCEEEEEECCC-CH----HHHHC--CEEEEEE-CCEE
T ss_conf             6677778999999999980885-37----77728--9899999-9999


No 45 
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.19  E-value=1.9e-07  Score=68.73  Aligned_cols=289  Identities=15%  Similarity=0.107  Sum_probs=170.3

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEEC
Q ss_conf             88856897799999999999998533698699954105-9999999998518-74898079999898-736880108853
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF-AAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAYN   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN-~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~~   78 (367)
                      |+--.||.|.|++++|.+.+.......+.++||=.|-+ -||.+++.+.+.| .|+-++-.-|++.- +.|.+--.+-.=
T Consensus        26 I~PdtYViDlD~v~~NAr~l~~~A~~~gi~Ly~MtKQ~GRNP~l~~~l~~~G~~g~VaVD~kEA~~l~~~gl~vghvGHL  105 (382)
T cd06811          26 IPPDTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGHL  105 (382)
T ss_pred             CCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCC
T ss_conf             79886897589999999999999997396899996105899899999997399856896099999999859983441571


Q ss_pred             CCCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH---
Q ss_conf             777803478861388-68985672059999998612345--614899635774431012455786435742788887---
Q gi|254780741|r   79 VAYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE---  152 (367)
Q Consensus        79 ~~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~---  152 (367)
                      -......+.+++... ..|++=|++....+.+.|.+.+.  +|+|||-     ...+.+.+|+..   |+..+++.+   
T Consensus       106 VQiP~~~v~~iv~~~PeviTVfS~ekA~eis~aA~~~g~~Q~illrV~-----~~~D~~Y~GQeg---Gf~l~eL~~v~~  177 (382)
T cd06811         106 VQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVY-----GDEDTLYPGQEG---GFPLEELPAVLA  177 (382)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEE-----CCCCCCCCCCCC---CEEHHHHHHHHH
T ss_conf             368576899999749978999209999999999998197332699996-----489846377537---754899999999


Q ss_pred             ----HHHCCCEEE-EECCC---CCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             ----431496066-53056---566614--78999999999898650887508753377666445568078999999875
Q gi|254780741|r  153 ----SEIKNVNGL-MFHNN---CENKSF--LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS  222 (367)
Q Consensus       153 ----~~~~~i~Gi-h~H~g---s~~~~~--~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~  222 (367)
                          ....+|.|+ ||=+-   .+....  ..=-..+..+.+++++.+.+..-+|..+-           +-+.. -...
T Consensus       178 ~i~~l~gi~i~GvT~FPc~L~d~~~~~~~pT~N~~Tl~~A~~~L~~~G~~~~qvN~PSa-----------Ts~~t-lp~L  245 (382)
T cd06811         178 AIKALPGIRIAGLTSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSA-----------TSCAT-LPLL  245 (382)
T ss_pred             HHHHCCCCEEEEEECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----------CHHHH-HHHH
T ss_conf             99728996796643200687747779511585299999999999975986279506851-----------14765-9999


Q ss_pred             HHCCCEEEEEHHHHCCC-------------CCEEEEEEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             42165045300220145-------------74188878878630443334333356--5656640013455300024786
Q gi|254780741|r  223 EKYSVQIYLEPGEAIVT-------------NTTTLNTTVLDISENIKNLVIVDSSV--EAHVPDYLLYQESATIYPNTGP  287 (367)
Q Consensus       223 ~~~~~~l~iEPGR~lv~-------------~ag~lv~~V~~~K~~~~~~v~vd~g~--~~~~~~~~~~~~~~~~~~~~~~  287 (367)
                      ++++.+= .|||-+|.+             .|+++|++|=..- +++-|+ --||.  ..|+..++.+..      ....
T Consensus       246 a~~G~Th-~EPGHaLTGTtP~ha~~d~pE~pA~vYvSEISH~~-~g~sY~-yGGG~YrR~hl~~ALV~~~------~~~~  316 (382)
T cd06811         246 AEYGVTH-GEPGHALTGTTPLHAVGDQPEKPAMVYVSEVSHTF-GGHSYC-YGGGFYRRSHLKNALVGTD------PDDA  316 (382)
T ss_pred             HHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC-CCCEEE-ECCCCCCCCCCCCEEECCC------CCCH
T ss_conf             9848866-78874124788554567788761399998645742-895587-5886654666333255168------2322


Q ss_pred             EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf             459986233366645521356677887989999
Q gi|254780741|r  288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISF  320 (367)
Q Consensus       288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i  320 (367)
                      ....|--+.-++-|+-..-. -+...+||.+++
T Consensus       317 ~~~~v~~~~~~sIDYy~~l~-~~~~~vGdtVi~  348 (382)
T cd06811         317 SAHRAELLDPENIDYYGTLD-GPEFAVGDTVIM  348 (382)
T ss_pred             HHEECCCCCCCCEEEEEECC-CCCCCCCCEEEE
T ss_conf             11323579977620677528-987898880899


No 46 
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.14  E-value=2.1e-07  Score=68.44  Aligned_cols=152  Identities=15%  Similarity=0.069  Sum_probs=94.5

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HC-CEEEEECHHHHHHHHCCCCCCCEEE-C
Q ss_conf             8885689779999999999999853369869995410599999999985-18-7489807999989873688010885-3
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQ-YM-DGTTSSSLYEVMLGHEKFGGETHAY-N   78 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~-~g-~g~dv~S~~E~~la~~g~~~~~i~~-~   78 (367)
                      |+||+-|.|.|.+++|++++..... .+..+.-+.|+-.++.+++.+-+ .| .|+-|.+..|+....+++....|.. +
T Consensus         7 i~tP~lvvDldal~~Ni~~m~~~~~-~~~~lRph~Ks~ks~~ll~~~~~~~g~~g~~~~~~~e~~~~~~~~~~~DiLl~~   85 (379)
T cd06814           7 IGEPTLLLDKDRLDHNIDLLREHLA-GSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDADILLGK   85 (379)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHC-CCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCEEECC
T ss_conf             8997699618999999999999756-899735350405799999999874598757882199999999747666489648


Q ss_pred             CCCCHH---HHHHH----HCC--CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf             777803---47886----138--868985672059999998612345614899635774431012455786435742---
Q gi|254780741|r   79 VAYKDC---EIDAV----LSN--CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK---  146 (367)
Q Consensus        79 ~~~~~~---el~~a----~~~--~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~---  146 (367)
                      |.....   .+...    ...  ..++.+||.+.++.+.+.++..+.+  |||..++..        |.  .|=|+.   
T Consensus        86 p~~~~~~~~~~~~~~~~~~~~~~~i~~~VD~~~~l~~l~~~a~~~g~~--l~V~ieiDv--------G~--~R~Gv~~~~  153 (379)
T cd06814          86 PMPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGLT--LRINLELDV--------GL--HRGGFADPQ  153 (379)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCC--EEEEEEECC--------CC--CCCCCCCHH
T ss_conf             774078999998733100266561799983899999999999875981--689999678--------88--738878979


Q ss_pred             -HHH----HHHHHHCCCEEEEECCC
Q ss_conf             -788----88743149606653056
Q gi|254780741|r  147 -CKD----KIESEIKNVNGLMFHNN  166 (367)
Q Consensus       147 -~~~----~~~~~~~~i~Gih~H~g  166 (367)
                       ..+    +......++.|++.+-|
T Consensus       154 ~a~~la~~I~~~~~l~l~Glm~Yeg  178 (379)
T cd06814         154 TLPKALTAIDAPPRLRFSGLMGYEP  178 (379)
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEEHH
T ss_conf             9999999997389977989851646


No 47 
>pfam01168 Ala_racemase_N Alanine racemase, N-terminal domain.
Probab=99.09  E-value=5.1e-08  Score=72.40  Aligned_cols=176  Identities=19%  Similarity=0.179  Sum_probs=112.3

Q ss_pred             EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CH---HHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECCCCCH
Q ss_conf             77999999999999985336986999541059-99---99999985187489807999989873-688010885377780
Q gi|254780741|r    9 IDKQKLLNNLDTALYIRKNAGVKLLLALKCFA-AW---GMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNVAYKD   83 (367)
Q Consensus         9 ~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~-~~---~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~~~~~   83 (367)
                      .|.+.+++|++.++..... +.+++--+|+|. ..   .+++.+.....++-|++..|+...++ +.+....+.+ ...+
T Consensus         1 Idl~~l~~Ni~~i~~~~~~-~~~l~aVvK~nayG~g~~~i~~~~~~g~~~f~v~~~~Ea~~lr~~~~~~~Il~l~-~~~~   78 (216)
T pfam01168         1 IDLDALRHNIRALRERAGR-PVKLMAVVKANAYGHGAVRVARALAAGADGFGVATLQEALELREAGITAPILVLG-FFPP   78 (216)
T ss_pred             CCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEEC-CCCH
T ss_conf             9779999999999985699-9989999777777866999999998089855980099999999818987077736-8996


Q ss_pred             HHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------HH
Q ss_conf             347886138868985672059999998612345--6148996357744310124557864357427888874------31
Q gi|254780741|r   84 CEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------EI  155 (367)
Q Consensus        84 ~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------~~  155 (367)
                      +++..+.+.....++||.++++.+.+.++..+.  +|.|-||            +|  .+|+|++.+++.+.      ..
T Consensus        79 ~~~~~~~~~~~~~~v~s~~~l~~l~~~~~~~~~~~~v~l~vd------------tG--m~R~G~~~~~~~~~~~~i~~~~  144 (216)
T pfam01168        79 EELALAAEYDLIPTVDSLEQAEALSAAAAKLGRPLRVHLKVD------------TG--MGRLGFTPEELPALAEALALPG  144 (216)
T ss_pred             HHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE------------EC--CCCCCCCHHHHHHHHHHHHCCC
T ss_conf             999999985978997889999999999998599808999997------------47--8768879999999999985599


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             496066530565666147899999999989865088750875337
Q gi|254780741|r  156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGG  200 (367)
Q Consensus       156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG  200 (367)
                      .++.|+..|..+...........++.+.+..+.+......+.+|.
T Consensus       145 l~~~Gi~tH~~~~d~~~~~~~~q~~~f~~~~~~l~~~~~~~s~~n  189 (216)
T pfam01168       145 LRLEGLMTHFACADEPDATNRAQLARFRELADALEAAGPVLSLGN  189 (216)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHC
T ss_conf             967899950588789758999999999999998656899985116


No 48 
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.03  E-value=2.7e-08  Score=74.26  Aligned_cols=302  Identities=17%  Similarity=0.157  Sum_probs=173.2

Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHHCCEEEEECHH-HHH-HHHCCCCCCCEEE-CC
Q ss_conf             856897799999999999998533698699954105-9999999998518748980799-998-9873688010885-37
Q gi|254780741|r    4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF-AAWGMFDTLNQYMDGTTSSSLY-EVM-LGHEKFGGETHAY-NV   79 (367)
Q Consensus         4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN-~~~~il~~l~~~g~g~dv~S~~-E~~-la~~g~~~~~i~~-~~   79 (367)
                      -|-.+.|.++|++|.+.++..++..+.++++-.|.. -+|.+.+.+.+.|...=+.|-. |++ +..+|....-+.. +|
T Consensus         3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P   82 (353)
T COG3457           3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP   82 (353)
T ss_pred             CCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf             87178768998876899999998739779998752058818999999658543430227889999975999675476265


Q ss_pred             CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-----
Q ss_conf             7780347886138868985672059999998612345--614899635774431012455786435742788887-----
Q gi|254780741|r   80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE-----  152 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~-----  152 (367)
                      ..++  ++..++....+.+-+++-+..+.+.|.+.++  +|.|+|.-+  .     ..+    +..+...+++.+     
T Consensus        83 ~~se--i~~vv~~~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~--D-----lre----G~~~~~~~~l~~~V~eI  149 (353)
T COG3457          83 CMSE--IEDVVRKVDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYG--D-----LRE----GQWGFLIEDLEETVEEI  149 (353)
T ss_pred             CHHH--HHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECC--C-----CCC----CCHHHHHHHHHHHHHHH
T ss_conf             2889--999987357689725899999999999827521699999835--6-----667----40244788889999999


Q ss_pred             --HHHCCCEEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             --43149606653056566---6147899999999989865088750875337766644556807899999987542165
Q gi|254780741|r  153 --SEIKNVNGLMFHNNCEN---KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSV  227 (367)
Q Consensus       153 --~~~~~i~Gih~H~gs~~---~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~  227 (367)
                        ....++.||.+|.+|-.   -..+.+...+....++-+..|..+++++=|---..+  -.+.-.+.. +.+       
T Consensus       150 ~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~l~~vsagnats~~--~L~~~~~~~-inh-------  219 (353)
T COG3457         150 QQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQLKQVSAGNATSLT--LLPMGSLPG-INH-------  219 (353)
T ss_pred             HCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH--HHHCCCCCC-CCC-------
T ss_conf             6699835986311665456767884048999999999877329505881279862033--201455225-555-------


Q ss_pred             EEEEEHHHH--------------CCCCCEEEEEEEEEEECCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             045300220--------------1457418887887863044---------33343333565656640013455300024
Q gi|254780741|r  228 QIYLEPGEA--------------IVTNTTTLNTTVLDISENI---------KNLVIVDSSVEAHVPDYLLYQESATIYPN  284 (367)
Q Consensus       228 ~l~iEPGR~--------------lv~~ag~lv~~V~~~K~~~---------~~~v~vd~g~~~~~~~~~~~~~~~~~~~~  284 (367)
                         +|||-+              +--+|+.+.++|..+|..-         ++-..+|+|+..+---.+-.+........
T Consensus       220 ---lriG~al~~g~~~~n~~~~~~e~da~~lesEIie~k~k~s~~ige~f~~~~~f~d~g~~~rAi~aig~~dv~~~~~s  296 (353)
T COG3457         220 ---LRIGEALTGGVTPTNQYIDWLEQDAMLLESEIIEVKDKPSYPIGEGFYRRSGFVDAGIRLRAIAAIGEQDVDVVNLS  296 (353)
T ss_pred             ---CCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             ---44452145361020110230035221011245521578861205421356665442034788777655247767886


Q ss_pred             CCCEEEEEECCCCCCCCEE-EECCCCCCCCCCCEEEEECCC-CHHHHHCCCC
Q ss_conf             7864599862333666455-213566778879899996887-0223243476
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIF-GEFHFEKPVKIGDRISFEDVA-GYNINRKNWF  334 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l-~~~~~~~~l~~GD~l~i~~~G-AY~~~~~~~F  334 (367)
                      +-++...+.|.+   +|-+ .+.+.--.+.+||.+.|...= |-..+|.+.+
T Consensus       297 piD~~i~ilgas---SDhvvld~~~q~~v~vgDvv~fr~~y~~l~~am~~~~  345 (353)
T COG3457         297 PIDYGIDILGAS---SDHVVLDFRDQIFVTVGDVVRFRLIYQGLLEAMYSKK  345 (353)
T ss_pred             CHHHHHHHHCCC---CCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCC
T ss_conf             276654453246---7718999605643224028999842111014430234


No 49 
>TIGR00492 alr alanine racemase; InterPro: IPR000821 Alanine racemase catalyses the pyridoxal-dependent conversion of L-alanine into D-alanine, a key component of bacterial peptidoglycan . In Escherichia coli and Salmonella typhimurium, there are two alanine racemase isoforms, alr is a biosynthetic form required for cell wall formation; and dadB functions in L-alanine catabolism. By contrast with dadB and alr, both of which are monomeric enzymes, the alanine racemase of Bacillaceae are homodimers. In Pseudomonas putida, a broad-specificity amino acid racemase is structurally and functionally related to alanine racemase. The 3D-structure of the dimeric alanine racemase from Bacillus stearothermophilus has been determined to a resolution of 1.9 A . Each monomer comprises two domains, with an eight-stranded alpha/beta barrel at the N-terminus, and a C-terminal beta-strand domain. In the dimer, the mouth of the alpha/beta barrel of one monomer faces the second domain of the other monomer. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the barrel mouth and is covalently linked via an aldimine linkage to Lys39. Several other residues are involved in anchoring the PLP, for example, Arg219 forms a hydrogen bond with the pyridine nitrogen of the cofactor, which is assumed to influence electron delocalisation in PLP-alanine intermediates; Arg136 donates a hydrogen bond to the phenolic oxygen of PLP, and may be involved in substrate binding and stabilisation of intermediates; and Tyr265' is postulated to be a 2 proton donor to the carbanion intermediate .; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process.
Probab=98.70  E-value=3.8e-05  Score=53.48  Aligned_cols=297  Identities=13%  Similarity=0.068  Sum_probs=175.1

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECCC
Q ss_conf             89779999999999999853369869995410599----99999998518-7489807999989873-688010885377
Q gi|254780741|r    7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNVA   80 (367)
Q Consensus         7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~~   80 (367)
                      -..|.+.|++|++.+++... +..++.==||||..    ..|.+++.+.| +++-|+++.|..--++ |......++...
T Consensus         6 ~~id~~ALk~Nl~~~k~~~~-~~~~~~AVVKANAYGHG~~~~a~~~~~~Gad~lavA~LeEAi~LR~~G~~~PIL~Lg~~   84 (383)
T TIGR00492         6 VEIDLAALKHNLSAIKKQIG-PKSKIMAVVKANAYGHGLIEVAKTLLQAGADYLAVATLEEAIELRKAGITAPILLLGGF   84 (383)
T ss_pred             EEECHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEEECC
T ss_conf             99926789999999997468-87569999814842601899999998658966400024677998854788757885047


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HHHHHH---
Q ss_conf             78034788613886898567205999999861234--561489963577443101245578643574278-888743---
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DKIESE---  154 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~~~~~---  154 (367)
                      ..++++..+.++--.-.+=|.++|+.+.+.....+  +++-+=++-          |||+  .|+|+..+ +.....   
T Consensus        85 ~~~~~~~~~~~~~l~~~v~s~Eql~~~~~~~lk~~sa~~l~vhlK~----------DTGM--~RLG~~~~f~~~~~~~~~  152 (383)
T TIGR00492        85 FSAEDLKILAAWDLTTTVHSVEQLKALEEALLKEPSAKRLKVHLKI----------DTGM--NRLGVKPDFEEALFVQKL  152 (383)
T ss_pred             CCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEE----------CCCC--CCCCCCCCHHHHHHHHHH
T ss_conf             9988999998618638980889999999984104478747899862----------3888--647888657899999999


Q ss_pred             ----H-CCCEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHCCC-------CCEEEEECCCCCCCCCC----CCCHHHHH
Q ss_conf             ----1-49606653056566614--7899999999989865088-------75087533776664455----68078999
Q gi|254780741|r  155 ----I-KNVNGLMFHNNCENKSF--LCFSAMLKNIEKEFGHFIT-------QIEWISLGGGIHFTDKD----YPVKDFCQ  216 (367)
Q Consensus       155 ----~-~~i~Gih~H~gs~~~~~--~~~~~~l~~~~~~~~~~~~-------~l~~idiGGG~~~~~~~----~~~~~~~~  216 (367)
                          . ..+.||--|.- ...++  ...+..++......+.+..       -...-|=||.+..+...    +++-...=
T Consensus       153 ~~~~~~~~~~gi~sHfa-~AD~~~~~~~~~Q~~~F~~~~~~L~~~~i~~~~~~h~aNSaaiL~~~~~~enr~fd~vRpGI  231 (383)
T TIGR00492       153 RALSKLLELEGIFSHFA-TADEPKTTTTKKQIERFLSFLEGLKQQKIELIPFRHIANSAAILSLPEGHENRLFDMVRPGI  231 (383)
T ss_pred             HHCCCCCCCCCEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCH
T ss_conf             83645643021121456-76772214799999999999851343686476335421017864453356664011442143


Q ss_pred             HHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC--CCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC--
Q ss_conf             9998754216504530022014574188878878630--44333433335656------5664001345530002478--
Q gi|254780741|r  217 RLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE--NIKNLVIVDSSVEA------HVPDYLLYQESATIYPNTG--  286 (367)
Q Consensus       217 ~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~--~~~~~v~vd~g~~~------~~~~~~~~~~~~~~~~~~~--  286 (367)
                      -+-.+.   +-.=+-+-=.+-.-+..+|-++|+.||.  .|.+.|.--+-+..      -+-|..|-.=++.-.++..  
T Consensus       232 iLYG~~---Ps~~~~~~~~~~L~PVlsL~s~i~~vr~~k~Ger~VsYG~~~~a~~d~~iGvva~GYaDG~pR~l~n~~~V  308 (383)
T TIGR00492       232 ILYGLY---PSADMKDGAPLGLKPVLSLKSKIIQVRTVKKGERPVSYGGTFTAEEDTKIGVVAIGYADGYPRALSNGTPV  308 (383)
T ss_pred             HHHCCC---CCHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEECHHCCCHHHCCCCCEE
T ss_conf             532147---62001455434750312678999998740588974246724865787368999620024752115898679


Q ss_pred             ---CEEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEEC
Q ss_conf             ---645998623336664552135-667788798999968
Q gi|254780741|r  287 ---PYTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFED  322 (367)
Q Consensus       287 ---~~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~  322 (367)
                         ..+..++|..|+  |.++-+. ...+...||-|++..
T Consensus       309 L~~G~~~~~~G~V~M--D~~~V~L~~~~~~k~G~~Vil~G  346 (383)
T TIGR00492       309 LVNGKRVPIVGRVCM--DMLMVDLGPNLQAKTGDEVILWG  346 (383)
T ss_pred             EECCEEEEEEEEEEE--EEEEEECCCCCCCCCCCEEEEEE
T ss_conf             886746314410141--00666238888898761689974


No 50 
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=96.21  E-value=0.11  Score=30.72  Aligned_cols=174  Identities=14%  Similarity=0.126  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HHHC--CCCC-CCEEECCCCCHHH
Q ss_conf             9999999999998533--6986999541059999999998518748980799998-9873--6880-1088537778034
Q gi|254780741|r   12 QKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LGHE--KFGG-ETHAYNVAYKDCE   85 (367)
Q Consensus        12 ~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la~~--g~~~-~~i~~~~~~~~~e   85 (367)
                      +.|+++++.-......  ..+++.-.-|+-|...|........-.|-=.=..|+. ...+  ..+. .-+..++-=+ .-
T Consensus         7 ~~i~~~I~~a~~~~gR~~~~V~LiaVSK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NK   85 (224)
T cd06824           7 AQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPIQS-NK   85 (224)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCH-HH
T ss_conf             99999999999983879576599998899899999999986995247870999999999853378955999775520-16


Q ss_pred             HHHHHCCCCEE-EECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HH
Q ss_conf             78861388689-85672059999998612345--6148996357744310124557864357427888874-------31
Q gi|254780741|r   86 IDAVLSNCDTI-IFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EI  155 (367)
Q Consensus        86 l~~a~~~~~~i-~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~  155 (367)
                      ++.++.....| ++||+.-...|...+...+.  +|+|-||.            ++..+|.|+..+++.+.       ..
T Consensus        86 vk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~------------s~E~~K~G~~~~e~~~~~~~i~~~~~  153 (224)
T cd06824          86 TKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI------------SGEDSKSGVAPEDAAELAEAISQLPN  153 (224)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             799998521897645099999999999972998628999853------------78500269899999999999995699


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEC
Q ss_conf             4960665305656661478999999999898650---8875087533
Q gi|254780741|r  156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF---ITQIEWISLG  199 (367)
Q Consensus       156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~---~~~l~~idiG  199 (367)
                      .++.||.+- +....+..........+.+++.++   +..+..|..|
T Consensus       154 l~i~GLMti-~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMG  199 (224)
T cd06824         154 LRLRGLMAI-PAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMG  199 (224)
T ss_pred             CCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             842667765-7999885789999999999999998517998957770


No 51 
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=95.93  E-value=0.15  Score=29.85  Aligned_cols=174  Identities=11%  Similarity=0.092  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HHHCCCCC-C-CEEECCCCCHHHH
Q ss_conf             9999999999998533--6986999541059999999998518748980799998-98736880-1-0885377780347
Q gi|254780741|r   12 QKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LGHEKFGG-E-THAYNVAYKDCEI   86 (367)
Q Consensus        12 ~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la~~g~~~-~-~i~~~~~~~~~el   86 (367)
                      +.|+++++........  ..+++.=..|.-|...|..+.....-.|-=.=..|+. .+. .++. + +-.|=|..-+.-+
T Consensus         6 ~~i~~~I~~a~~~~~R~~~~V~LiaVsK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~-~l~~~~i~wHfIG~LQsNKv   84 (222)
T cd00635           6 EEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAE-ELPDPDIEWHFIGHLQTNKV   84 (222)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCHHHH
T ss_conf             99999999999982889565189999899899999999985996236770899998687-54888825999667623669


Q ss_pred             HHHHCCCCEE-EECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHC
Q ss_conf             8861388689-85672059999998612345--6148996357744310124557864357427888874-------314
Q gi|254780741|r   87 DAVLSNCDTI-IFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EIK  156 (367)
Q Consensus        87 ~~a~~~~~~i-~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~~  156 (367)
                      +.++.....| ++||+..+++|...+...+.  +|+|-||.+            ...+|.|+..+++.+.       ...
T Consensus        85 k~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNis------------~e~~K~G~~~~e~~~~~~~~~~~~~l  152 (222)
T cd00635          85 KYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIG------------GEESKSGVAPEELEELLEEIAALPNL  152 (222)
T ss_pred             HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECC------------CCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             987500458887788999999999999729997189998158------------87555688999999999999966899


Q ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHHH----HCCCCCEEEEEC
Q ss_conf             9606653056566614789999999998986----508875087533
Q gi|254780741|r  157 NVNGLMFHNNCENKSFLCFSAMLKNIEKEFG----HFITQIEWISLG  199 (367)
Q Consensus       157 ~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~----~~~~~l~~idiG  199 (367)
                      ++.||.+- ++...+...-......+.+++.    ++...+..|..|
T Consensus       153 ~~~GLM~i-~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMG  198 (222)
T cd00635         153 RIRGLMTI-APLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMG  198 (222)
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf             75103653-69999979999999999999999876459993988981


No 52 
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with  similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=88.72  E-value=1.9  Score=22.59  Aligned_cols=177  Identities=14%  Similarity=0.077  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCC--EEECCCCCHHHHHH
Q ss_conf             9999999999999853369869995410599999999985187489807999989873688010--88537778034788
Q gi|254780741|r   11 KQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGET--HAYNVAYKDCEIDA   88 (367)
Q Consensus        11 ~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~--i~~~~~~~~~el~~   88 (367)
                      ...|++++.+.........+++.=.-|.-|...|..+.....-.|-=.-..|+..=...++.+.  +..++ .-+.-++.
T Consensus         5 l~~I~~~I~~a~~~~~~~~v~LiAVsK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~~i~WHfIG~-LQsNKvk~   83 (227)
T cd06822           5 LKRIRQAVKRASKKLPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGH-LQSNKVKK   83 (227)
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHH
T ss_conf             99999999999976799996899997998999999999869960288609999999984532545999645-32434899


Q ss_pred             HHC--CCCEE-EECCCHHHHHHHHHHHCCC----CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--------
Q ss_conf             613--88689-8567205999999861234----56148996357744310124557864357427888874--------
Q gi|254780741|r   89 VLS--NCDTI-IFNTVSQLNKFKDKAQKLH----KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES--------  153 (367)
Q Consensus        89 a~~--~~~~i-~iDs~~El~~i~~~a~~~~----~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~--------  153 (367)
                      ++.  +...| ++||+.-++.|...+...+    .+|+|-||.+            ...+|.|+..+++.+.        
T Consensus        84 i~~~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi~------------~E~~K~G~~~~e~~~~~~~i~~~~  151 (227)
T cd06822          84 LLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTS------------GEESKSGLEPSEAVELVKHIIEEC  151 (227)
T ss_pred             HHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC------------CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             97067744664157499999999999973688870699997027------------864568989999999999999868


Q ss_pred             HHCCCEEEEECCCCCCCC----H-HHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             314960665305656661----4-78999999999898650887508753377
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKS----F-LCFSAMLKNIEKEFGHFITQIEWISLGGG  201 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~----~-~~~~~~l~~~~~~~~~~~~~l~~idiGGG  201 (367)
                      ...++.||.+-- ....+    . ..|+.+-+...++..+++...+...+-=|
T Consensus       152 ~~l~i~GLMti~-p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMG  203 (227)
T cd06822         152 PNLKFSGLMTIG-SFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMG  203 (227)
T ss_pred             CCCEEEEEEEEC-CCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf             997688999869-8998800221399999999999999974999997988685


No 53 
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=84.46  E-value=3.1  Score=21.12  Aligned_cols=175  Identities=16%  Similarity=0.118  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHH-C-CCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCC----CCEEECCCCCHH
Q ss_conf             99999999999998533-6-98699954105999999999851874898079999898736880----108853777803
Q gi|254780741|r   11 KQKLLNNLDTALYIRKN-A-GVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGG----ETHAYNVAYKDC   84 (367)
Q Consensus        11 ~~~i~~n~~~~~~~~~~-~-~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~----~~i~~~~~~~~~   84 (367)
                      ...+++++++-...... + .+++.=.-|+-|...|-+.+....-.|-=.=..|+.-=.+.++.    +-+..+|-- +.
T Consensus         7 l~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~LQ-sN   85 (228)
T COG0325           7 LAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGPLQ-SN   85 (228)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECHHH-HH
T ss_conf             99999999999997389988479999767789999999998488032331899999999964767881799964113-56


Q ss_pred             HHHHHHCCCCEE-EECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-------HH
Q ss_conf             478861388689-8567205999999861234--5614899635774431012455786435742788887-------43
Q gi|254780741|r   85 EIDAVLSNCDTI-IFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE-------SE  154 (367)
Q Consensus        85 el~~a~~~~~~i-~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~-------~~  154 (367)
                      -.+.+++....+ ++|++.-...|.+.+...+  .+|.|-||-            ++..||-|+..+++.+       ..
T Consensus        86 K~k~v~~~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi------------~~E~sK~G~~~~e~~~~~~~~~~~~  153 (228)
T COG0325          86 KVKLVAENFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNI------------SGEESKSGVPPEELDELAQEVQELP  153 (228)
T ss_pred             HHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             7999984242333307799999999899737988638999943------------8862337999899999999997489


Q ss_pred             HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEC
Q ss_conf             149606653056566614789999999998986508---875087533
Q gi|254780741|r  155 IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFI---TQIEWISLG  199 (367)
Q Consensus       155 ~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~---~~l~~idiG  199 (367)
                      ..+|.||.+-. +-..+.......+..+.++++++.   ..++.|..|
T Consensus       154 ~L~l~GLM~ip-p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMG  200 (228)
T COG0325         154 NLELRGLMTIP-PLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMG  200 (228)
T ss_pred             CCEEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf             97675777417-998997999999999999999998745897852686


No 54 
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=84.33  E-value=2.9  Score=21.35  Aligned_cols=50  Identities=20%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCC-EEEEEHHH
Q ss_conf             8650887508753377666445568078999999875-42165-04530022
Q gi|254780741|r  186 FGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS-EKYSV-QIYLEPGE  235 (367)
Q Consensus       186 ~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~-~~~~~-~l~iEPGR  235 (367)
                      +.+.+..++.|=+|||-|-.-+...++.+.+.+.+.. .-.++ ++-+|-||
T Consensus       221 l~~~~~~i~TIY~GGGTPS~Ls~~ql~~ll~~i~~~F~~~~~~~EiTvEanR  272 (497)
T PRK08207        221 LKEKGLKIETIYFGGGTPTSITAEEFEKLLEEIYESFPDVKNVKEFTVEAGR  272 (497)
T ss_pred             HHCCCCEECEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf             6237980356997998100299999999999999865768999779997879


No 55 
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113   6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket .    This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=84.03  E-value=3.2  Score=21.00  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=76.8

Q ss_pred             HHHHCCCCCCCEEEC--CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCC--------------
Q ss_conf             898736880108853--7778034788613886898567205999999861234561489963577--------------
Q gi|254780741|r   64 MLGHEKFGGETHAYN--VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVS--------------  127 (367)
Q Consensus        64 ~la~~g~~~~~i~~~--~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~--------------  127 (367)
                      ..+..||  +..|||  +.|+++.|.....+..++=..|++|+-...+    .|+||+|=|.-+-.              
T Consensus        17 N~~d~GF--~V~VyNRt~~Ktd~fl~~~~~gk~i~g~~~ieeFV~~Le----~PRKImLMVkAG~pVdaD~~I~~L~P~L   90 (480)
T TIGR00873        17 NMADHGF--TVAVYNRTPEKTDEFLKERAKGKKIVGAYSIEEFVQSLE----RPRKIMLMVKAGAPVDADAVINSLLPLL   90 (480)
T ss_pred             HHHHCCC--CEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC----CCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             8874698--279972684799999860378885334326799998506----8872888775388537789999964435


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--EEE-------------EECCCCCCCCHHHHHHHHHHHHHHHHHCC--
Q ss_conf             4431012455786435742788887431496--066-------------53056566614789999999998986508--
Q gi|254780741|r  128 YSKFILADPNRPFSRLGEKCKDKIESEIKNV--NGL-------------MFHNNCENKSFLCFSAMLKNIEKEFGHFI--  190 (367)
Q Consensus       128 ~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i--~Gi-------------h~H~gs~~~~~~~~~~~l~~~~~~~~~~~--  190 (367)
                      ..+.=.+|-  .+|=|-.+.+.-.+....+|  .|.             +...|   .+.++|+.+--.+.++.++..  
T Consensus        91 E~GDiIIDG--GNS~Y~DT~RR~~eL~~~Gi~FvG~GvSGGEeGAl~GPSiMPG---G~~~Ay~~~~PIl~~IAAkv~dP  165 (480)
T TIGR00873        91 EKGDIIIDG--GNSHYKDTERRYKELKAKGILFVGVGVSGGEEGALKGPSIMPG---GSAEAYPLVAPILQKIAAKVDDP  165 (480)
T ss_pred             CCCCEEECC--CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             899888758--8788466578999998649816730132453021378877888---79878999967887655421685


Q ss_pred             -CC--CEEEEECC-CCCCC
Q ss_conf             -87--50875337-76664
Q gi|254780741|r  191 -TQ--IEWISLGG-GIHFT  205 (367)
Q Consensus       191 -~~--l~~idiGG-G~~~~  205 (367)
                       .+  ++||==+| |+++.
T Consensus       166 dg~PCC~wiG~~GAGHyVK  184 (480)
T TIGR00873       166 DGEPCCTWIGPDGAGHYVK  184 (480)
T ss_pred             CCCCCEEEECCCCCCCEEE
T ss_conf             3294224378679843053


No 56 
>PRK04036 DNA polymerase II small subunit; Validated
Probab=83.88  E-value=1  Score=24.27  Aligned_cols=75  Identities=17%  Similarity=0.386  Sum_probs=45.4

Q ss_pred             EEE-ECCCCCCCCHHHHHHHHHHHHHHH--HHCCCCCEEEEECC----CCCC---CCCCCCC-------HHHHHHHHHHH
Q ss_conf             665-305656661478999999999898--65088750875337----7666---4455680-------78999999875
Q gi|254780741|r  160 GLM-FHNNCENKSFLCFSAMLKNIEKEF--GHFITQIEWISLGG----GIHF---TDKDYPV-------KDFCQRLKEFS  222 (367)
Q Consensus       160 Gih-~H~gs~~~~~~~~~~~l~~~~~~~--~~~~~~l~~idiGG----G~~~---~~~~~~~-------~~~~~~i~~~~  222 (367)
                      .|+ .|+||...--..|.+.++.+---.  .++...++|+=|+|    |.++   .+.+..+       +.+++.++++.
T Consensus       241 fiSDiHvGSk~Fle~~w~kFi~Wln~~~~~~~~a~~vkYlviaGD~VDGVGiYPgQe~eL~i~di~~QY~~~a~~l~~iP  320 (497)
T PRK04036        241 FISDVHVGSKEFLEDAFEKFLDWLNGEVGSEEIASRVKYLIIAGDLVDGIGIYPGQEKELDIVDIYEQYEEAAEYLSQIP  320 (497)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99422217187879999999998658986344564053899945743640058984341430789999999999998585


Q ss_pred             HHCCCEEEEEHHHH
Q ss_conf             42165045300220
Q gi|254780741|r  223 EKYSVQIYLEPGEA  236 (367)
Q Consensus       223 ~~~~~~l~iEPGR~  236 (367)
                      +  ++++++=||.-
T Consensus       321 ~--~I~iii~PGNH  332 (497)
T PRK04036        321 E--HIKIIISPGNH  332 (497)
T ss_pred             C--CCEEEECCCCC
T ss_conf             5--75799857986


No 57 
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=83.15  E-value=3.5  Score=20.77  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=46.0

Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf             78645998623336664552135667788798999968870223243476899887799996799099997389
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFS  358 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~  358 (367)
                      +.-++|.+-|+-= |+.+-..-.--...++||.++|..-+-+......+|    .|.++++++++.+.-++++.
T Consensus        53 ~Rf~TYvI~g~~G-Sg~I~lNGaAAr~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i~~~~~~~  121 (126)
T PRK05449         53 ARFETYVIKGERG-SGVICLNGAAARLVQVGDLVIIAAYAQMDEEEAKTH----KPKVVFVDEDNRIKETAKYI  121 (126)
T ss_pred             CEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEEECCC
T ss_conf             5899999864798-875875667872279999999998663798897368----77799989998688870566


No 58 
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase; InterPro: IPR005963    Tryptophan 5-monooxygenase (1.14.16.4 from EC) is a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. It is the rate-limiting enzyme in the biosynthesis of serotonin in the central nervous system and catalyzes the first step of the synthesis of melatonin in the pineal gland .  L-tryptophan + tetrahydropteridine + O2 = 5-hydroxy-L-tryptophan + dihydropteridine + H2O  ; GO: 0004510 tryptophan 5-monooxygenase activity, 0042427 serotonin biosynthetic process.
Probab=81.37  E-value=1.6  Score=22.97  Aligned_cols=149  Identities=13%  Similarity=0.099  Sum_probs=77.9

Q ss_pred             CEEEEEEECCC--CHHHHHHHHH-HCCEEEEECHHHHHHHHC-CC-CCCCEEEC--C--CCCHHHHHHHHC----CCCEE
Q ss_conf             86999541059--9999999985-187489807999989873-68-80108853--7--778034788613----88689
Q gi|254780741|r   30 VKLLLALKCFA--AWGMFDTLNQ-YMDGTTSSSLYEVMLGHE-KF-GGETHAYN--V--AYKDCEIDAVLS----NCDTI   96 (367)
Q Consensus        30 ~~i~yA~KaN~--~~~il~~l~~-~g~g~dv~S~~E~~la~~-g~-~~~~i~~~--~--~~~~~el~~a~~----~~~~i   96 (367)
                      .+|+--+-++-  ...+++.|+. .....+|.|....-+.++ .. +...-.+.  +  +++=.||..+..    .|.-+
T Consensus        97 ~dvLv~ve~~~~~~~~~~~~L~~n~~~~~~v~~~~~~~l~~~~~~~~~S~~~~~~~~WFPk~IsDLD~~~nrVLMYG~eL  176 (499)
T TIGR01270        97 LDVLVDVEVDREELEEVLELLKSNELDVLEVTSPDRMTLKEEKSLEAGSDDATEKVPWFPKKISDLDKCANRVLMYGSEL  176 (499)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCC
T ss_conf             02467515765679999999740574457741765666421014678886556886457765040445424033006667


Q ss_pred             EECCCH----HHH----HHHHHHHC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH--------HHHHCCC
Q ss_conf             856720----599----99998612--34561489963577443101245578643574278888--------7431496
Q gi|254780741|r   97 IFNTVS----QLN----KFKDKAQK--LHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI--------ESEIKNV  158 (367)
Q Consensus        97 ~iDs~~----El~----~i~~~a~~--~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~--------~~~~~~i  158 (367)
                      -+|..-    |..    .++++|-+  +|..|- ||.  ....+         ..=+|+-..++.        +..++|+
T Consensus       177 DADHPGFKD~~YRkRR~~FA~lA~NYKHG~pIP-~ve--YT~~E---------~kTWG~iyreL~~LY~~hAc~efl~Nl  244 (499)
T TIGR01270       177 DADHPGFKDKEYRKRRMMFADLALNYKHGEPIP-RVE--YTEEE---------KKTWGTIYRELRRLYKTHACKEFLDNL  244 (499)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCC--CCCCC---------CCCCCHHHHHHHHHHHHHCHHHHHHHH
T ss_conf             878725887235677899999986310579888-620--15134---------210102212342411120105665105


Q ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             06653056566614789999999998986508875
Q gi|254780741|r  159 NGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQI  193 (367)
Q Consensus       159 ~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l  193 (367)
                      .-|.=|+|-.-.+++.++.+-+.+.+   +.|..+
T Consensus       245 ~lL~~~cGY~E~niPQL~dvs~FLK~---kTGF~~  276 (499)
T TIGR01270       245 PLLEKYCGYREDNIPQLEDVSKFLKA---KTGFRL  276 (499)
T ss_pred             HHHHHHCCCCCCCCCCHHHHHHHHHH---CCCCEE
T ss_conf             77875268876877527899999632---258542


No 59 
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=80.93  E-value=1.8  Score=22.63  Aligned_cols=75  Identities=9%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC-------CCCCCCCCCCC-------HHHHHHHHHHHHHCC
Q ss_conf             6530565666147899999999989865088750875337-------76664455680-------789999998754216
Q gi|254780741|r  161 LMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGG-------GIHFTDKDYPV-------KDFCQRLKEFSEKYS  226 (367)
Q Consensus       161 ih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG-------G~~~~~~~~~~-------~~~~~~i~~~~~~~~  226 (367)
                      --+|+||+..--..|.+.++.+.-..+ +..+++|+.++|       .+|.++.+..+       +.+++.+.++..  +
T Consensus       232 sDih~GSk~F~~~~f~~fi~wl~g~~~-~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp~--~  308 (481)
T COG1311         232 SDIHRGSKEFLEDEFEKFIDWLNGPGD-LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVPE--H  308 (481)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--C
T ss_conf             611105288888899999998638754-3212379997055213434446861210005516789999998853877--7


Q ss_pred             CEEEEEHHHHCC
Q ss_conf             504530022014
Q gi|254780741|r  227 VQIYLEPGEAIV  238 (367)
Q Consensus       227 ~~l~iEPGR~lv  238 (367)
                      +++++=||..=.
T Consensus       309 I~v~i~PGnhDa  320 (481)
T COG1311         309 IKVFIMPGNHDA  320 (481)
T ss_pred             CEEEEECCCCCC
T ss_conf             569981588875


No 60 
>TIGR02050 gshA_cyan_rel uncharacterized enzyme; InterPro: IPR011793    This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believed to make glutathione, and the function is unknown..
Probab=74.24  E-value=2.7  Score=21.50  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=38.1

Q ss_pred             HHHHHHHHCCCCEEEECCCHH----HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCC--HHHHHHHH
Q ss_conf             034788613886898567205----99999986123456148996357744310124557864--35742--78888743
Q gi|254780741|r   83 DCEIDAVLSNCDTIIFNTVSQ----LNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFS--RLGEK--CKDKIESE  154 (367)
Q Consensus        83 ~~el~~a~~~~~~i~iDs~~E----l~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~s--kfG~~--~~~~~~~~  154 (367)
                      ++||.+-.-..++=+++++.|    |....+.+...-.++|+||-   ..++|+..    .++  +....  .+++.+..
T Consensus        46 ~~E~~~~~vE~at~v~~~~~eA~~~~~~~r~~l~~~A~~~G~~~~---~~gtHPf~----~W~~~~~~~~~rY~~~~e~~  118 (297)
T TIGR02050        46 KKELFESQVELATPVCTTLAEALAELREVRARLVEAASDLGLRIA---AAGTHPFA----RWREQELAENPRYQRLLERY  118 (297)
T ss_pred             CHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE---ECCCCCCH----HHHCCCCCCCHHHHHHHHHC
T ss_conf             422221444465684478789999999999999999866486365---13467753----33147778655589999861


Q ss_pred             H-----CCCEEEEECCCCCCCC
Q ss_conf             1-----4960665305656661
Q gi|254780741|r  155 I-----KNVNGLMFHNNCENKS  171 (367)
Q Consensus       155 ~-----~~i~Gih~H~gs~~~~  171 (367)
                      .     .=+.|+|+|+|..+.+
T Consensus       119 gy~~~~~Lv~G~HVHVgv~s~~  140 (297)
T TIGR02050       119 GYVARQSLVFGLHVHVGVPSPD  140 (297)
T ss_pred             CEEEHHEEECCEEEEECCCCHH
T ss_conf             8000001321134770327643


No 61 
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=73.54  E-value=6.8  Score=18.89  Aligned_cols=79  Identities=14%  Similarity=0.126  Sum_probs=40.8

Q ss_pred             HCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCC--CCCCCHHHHHHHHH---HHHHCC
Q ss_conf             149606653056566614789999999998---9865088750875337766644--55680789999998---754216
Q gi|254780741|r  155 IKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTD--KDYPVKDFCQRLKE---FSEKYS  226 (367)
Q Consensus       155 ~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~--~~~~~~~~~~~i~~---~~~~~~  226 (367)
                      ...+..+++...-...+...+++.++.+.+   +...++  .+.+-+..|.+...  .+..++.+.+.+++   ..++++
T Consensus        39 gl~i~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~a~~lG--~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g  116 (201)
T pfam01261        39 GLEITSLNPSLGLLEPDEREREAALEALKRAIELAAALG--AKVVVVHPGGALPGEDREEALDRLAESLNELAELAEEYG  116 (201)
T ss_pred             CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             997999977865458898999999999999999999739--958998268878899999999999999999999887557


Q ss_pred             CEEEEEHHH
Q ss_conf             504530022
Q gi|254780741|r  227 VQIYLEPGE  235 (367)
Q Consensus       227 ~~l~iEPGR  235 (367)
                      +++.+||--
T Consensus       117 i~i~iE~~~  125 (201)
T pfam01261       117 VKLALENHP  125 (201)
T ss_pred             EEEEEEECC
T ss_conf             389999879


No 62 
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=70.99  E-value=7.7  Score=18.52  Aligned_cols=10  Identities=30%  Similarity=0.597  Sum_probs=5.5

Q ss_pred             CCCEEEEEEC
Q ss_conf             5614899635
Q gi|254780741|r  116 KKIGLRINPS  125 (367)
Q Consensus       116 ~~I~lRinP~  125 (367)
                      .+|.+-+||+
T Consensus       124 ~EitiE~nP~  133 (416)
T COG0635         124 AEITIEANPG  133 (416)
T ss_pred             CEEEEEECCC
T ss_conf             2799950888


No 63 
>TIGR00629 uvde UV damage endonuclease UvdE; InterPro: IPR004601   Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts .    The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism .; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair.
Probab=70.64  E-value=7.9  Score=18.47  Aligned_cols=167  Identities=20%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             CCCCEEEC-CCCCH--H-HHH-HHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             80108853-77780--3-478-8613886898567205999999861234561489963577443101245578643574
Q gi|254780741|r   71 GGETHAYN-VAYKD--C-EID-AVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGE  145 (367)
Q Consensus        71 ~~~~i~~~-~~~~~--~-el~-~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~  145 (367)
                      .|+.+.-| |-|+.  . |+- ++++   .+..-|+..+-++..+..+.|.+ .+|+..+    =++.+++..-.=+|-.
T Consensus        45 ePehhlknkPdkskePqdelG~e~v~---~lg~aN~rd~~k~l~w~~~~GI~-f~R~SS~----~~PfAsHp~~gy~l~~  116 (345)
T TIGR00629        45 EPEHHLKNKPDKSKEPQDELGKEAVK---TLGKANLRDLVKLLHWNIGYGIR-FLRLSSS----LFPFASHPDVGYDLVT  116 (345)
T ss_pred             CCCHHHCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCE-EEECCCC----CCCCCCCCCCCCCCCC
T ss_conf             73023306774456753465489999---98888799999999988626831-6750200----0543255213641366


Q ss_pred             CHHHHHHHHH----CCCEEEEECCC--CCCCCH------------HHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCC
Q ss_conf             2788887431----49606653056--566614------------789999999998986508-8750875337766644
Q gi|254780741|r  146 KCKDKIESEI----KNVNGLMFHNN--CENKSF------------LCFSAMLKNIEKEFGHFI-TQIEWISLGGGIHFTD  206 (367)
Q Consensus       146 ~~~~~~~~~~----~~i~Gih~H~g--s~~~~~------------~~~~~~l~~~~~~~~~~~-~~l~~idiGGG~~~~~  206 (367)
                      ...+..+..+    ..=.-+.+|-|  +|..++            +...++|+.+ ++.++.. ..+=.|-|||-|+  .
T Consensus       117 faq~~l~E~G~la~~~~~Rlt~HPgQfT~~~SPre~Vv~sAirDlaYHd~~L~~m-kl~e~~N~DaV~~IH~GG~fg--~  193 (345)
T TIGR00629       117 FAQKELREIGKLAKTYQHRLTFHPGQFTQLTSPRESVVKSAIRDLAYHDELLSAM-KLAEQLNKDAVLIIHLGGAFG--N  193 (345)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCEEEEECCCCCC--C
T ss_conf             1778999999999981884124886110146865567677765489999999860-670011665388874388767--6


Q ss_pred             CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC
Q ss_conf             55680789999998754216504530022014574188878878630
Q gi|254780741|r  207 KDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE  253 (367)
Q Consensus       207 ~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~  253 (367)
                      ++..++.|.+.++++.++-.-|+++|=     .|-+..+-..+.+.+
T Consensus       194 K~~tl~rF~~Ny~rLsq~~K~RlvLEN-----DD~~wtv~dlLpvCe  235 (345)
T TIGR00629       194 KDTTLARFKKNYKRLSQSIKERLVLEN-----DDVTWTVEDLLPVCE  235 (345)
T ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCEEC-----CCCCCCHHHHHHHHH
T ss_conf             789999999867404467640351102-----786310542543212


No 64 
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH).  PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=68.77  E-value=3.9  Score=20.46  Aligned_cols=11  Identities=18%  Similarity=0.507  Sum_probs=4.1

Q ss_pred             CCCHHHHHHHH
Q ss_conf             67205999999
Q gi|254780741|r   99 NTVSQLNKFKD  109 (367)
Q Consensus        99 Ds~~El~~i~~  109 (367)
                      |++-||+.+.+
T Consensus       104 d~IPQl~dvs~  114 (306)
T cd03347         104 DNIPQLEDVSN  114 (306)
T ss_pred             CCCCCHHHHHH
T ss_conf             88997699999


No 65 
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=68.39  E-value=8.8  Score=18.16  Aligned_cols=12  Identities=17%  Similarity=0.351  Sum_probs=4.6

Q ss_pred             ECCCHHHHHHHH
Q ss_conf             567205999999
Q gi|254780741|r   98 FNTVSQLNKFKD  109 (367)
Q Consensus        98 iDs~~El~~i~~  109 (367)
                      -|++-||+.+.+
T Consensus       102 ~d~IPQl~dvs~  113 (298)
T cd03345         102 EDRIPQLEDVSE  113 (298)
T ss_pred             CCCCCCHHHHHH
T ss_conf             888998799989


No 66 
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=67.60  E-value=9.1  Score=18.06  Aligned_cols=132  Identities=17%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHH----CCCEEEEECCCC
Q ss_conf             6898567205999999861234561489963577443101245578643574--2788887431----496066530565
Q gi|254780741|r   94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGE--KCKDKIESEI----KNVNGLMFHNNC  167 (367)
Q Consensus        94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~--~~~~~~~~~~----~~i~Gih~H~gs  167 (367)
                      ..+...|+..+.++.+...+.+.+ ..|+..++    .+.++.- ....+..  ...+..+...    ..=.-+.||.|-
T Consensus        41 ~~l~~~Nl~~l~~il~~n~~~~I~-~fRlSS~l----~P~~shp-~~~~~~~~~~i~~~l~~iG~~ak~~~iRls~HPgq  114 (316)
T PRK02308         41 LEIALSNLEDLLRILEYNIAHGIR-LYRLSSSL----IPLASHP-ELVEWDYIEAFKEELRKIGALIKEHNMRLSFHPDQ  114 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCE-EEEECCCC----CCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf             999999999999999999975970-89925663----6677773-32458529999999999999999829458627976


Q ss_pred             ----CCCCHHHHHHHHHHHH---HHHHHCCCCC---EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf             ----6661478999999999---8986508875---0875337766644556807899999987542165045300
Q gi|254780741|r  168 ----ENKSFLCFSAMLKNIE---KEFGHFITQI---EWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEP  233 (367)
Q Consensus       168 ----~~~~~~~~~~~l~~~~---~~~~~~~~~l---~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEP  233 (367)
                          .+.+.+..++.+..+.   ++++..|..-   -.|.+||+++  .++..++.|++.+..+.+.-.-+|.+|=
T Consensus       115 f~vL~S~~~~Vv~~si~dL~~Ha~~ld~mGl~~~~~i~IHigg~yg--dk~~a~~rf~~n~~~L~~~vr~RL~lEN  188 (316)
T PRK02308        115 FVVLNSPKPEVVENSIKDLEYHARLLDLMGIEDSSKINIHVGGAYG--DKEKALERFIENIKKLPESIKKRLTLEN  188 (316)
T ss_pred             CEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHCCHHHHHEEEEEC
T ss_conf             2326899889999999999999999998479988628998147669--8789999999988658996732689955


No 67 
>pfam02261 Asp_decarbox Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.
Probab=66.36  E-value=9.6  Score=17.90  Aligned_cols=62  Identities=18%  Similarity=0.118  Sum_probs=40.2

Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf             7864599862333666455213566778879899996887022324347689988779999679909
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTI  351 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~  351 (367)
                      +.-++|.+-|+- -|+.+-..-.--...++||.++|..-+-+.......|    .|.++++++++.+
T Consensus        53 ~R~~TYvI~g~~-gSg~I~lNGaAAr~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i  114 (116)
T pfam02261        53 ERFETYVIPGER-GSGVICLNGAAARLVQPGDLVIIAAYAQMDEEEAKTH----KPKVVFVDEDNRI  114 (116)
T ss_pred             CEEEEEEEECCC-CCCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCC
T ss_conf             689999886479-9866864667862179999999998653798897378----7779999999889


No 68 
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=61.60  E-value=10  Score=17.67  Aligned_cols=115  Identities=12%  Similarity=0.114  Sum_probs=58.1

Q ss_pred             CCHHHHHH--HHHHHHHHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEE
Q ss_conf             61478999--99999989865088750875337766---64455680789999998754216504530022014574188
Q gi|254780741|r  170 KSFLCFSA--MLKNIEKEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTL  244 (367)
Q Consensus       170 ~~~~~~~~--~l~~~~~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~l  244 (367)
                      -++....+  +++.+.+.+.+.|.+=-.||+||-+-   .+..+.|                +++-||--+.- .+....
T Consensus       181 LDLggIAKGYAvD~i~~~L~~~Gi~~~lV~iGGei~~~G~~~~g~p----------------W~IgI~~P~~~-~~~~~~  243 (351)
T PRK10461        181 VDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGQP----------------WRVAIQKPTDR-ENAVQA  243 (351)
T ss_pred             EEECHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCC----------------EEEEECCCCCC-CCCCEE
T ss_conf             8613215999999999999976998469970552798778999995----------------59998188876-666258


Q ss_pred             EEEEE----EEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCEEEECCC
Q ss_conf             87887----86304433343333565656-6400134553000247-86459986233366645521356
Q gi|254780741|r  245 NTTVL----DISENIKNLVIVDSSVEAHV-PDYLLYQESATIYPNT-GPYTAMVCGRSCLAGDIFGEFHF  308 (367)
Q Consensus       245 v~~V~----~~K~~~~~~v~vd~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~v~G~~C~~~D~l~~~~~  308 (367)
                      +.++.    .+.-++++|...|+-..+|+ .|.=       ..|-. .-...+|..+.|...|-|....+
T Consensus       244 ~v~l~~~avaTSG~Y~r~f~~~G~ry~HIIdP~T-------G~P~~~~~~SvTVia~~~~~ADalaTAl~  306 (351)
T PRK10461        244 VVDINGHGISTSGSYRNYYELDGKRLSHVIDPQT-------GRPIEHNLVSVTVIAPTALEADGWDTGLM  306 (351)
T ss_pred             EEEECCCEEEEECCCCCEEEECCCEEEEEECCCC-------CCCCCCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf             9982794799136876668409938702776888-------99677896699999598167999999998


No 69 
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=61.17  E-value=12  Score=17.28  Aligned_cols=124  Identities=15%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             HCCCCEEEECCCHHHHHHHHHHHCC----CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECC
Q ss_conf             1388689856720599999986123----456148996357744310124557864357427888874314960665305
Q gi|254780741|r   90 LSNCDTIIFNTVSQLNKFKDKAQKL----HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHN  165 (367)
Q Consensus        90 ~~~~~~i~iDs~~El~~i~~~a~~~----~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~  165 (367)
                      .-+|++-++=+.++|++|.+..++.    ..++-+-+||+.-                  +.+.+......++.-+++  
T Consensus        56 y~GGGTPs~l~~~~l~~l~~~i~~~~~~~~~E~TiE~nP~~~------------------~~~~l~~l~~~GvNRiSi--  115 (374)
T PRK05799         56 FIGGGTPSYLSLEALEILLKTIKKLNKKENLEFTVEGNPGTF------------------TEEKLKILKSMGVNRISI--  115 (374)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC------------------CHHHHHHHHHCCCCEEEE--
T ss_conf             979965022999999999999985688878458998566778------------------999999999719975888--


Q ss_pred             CCCCCCHHHH---------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEE
Q ss_conf             6566614789---------99999999898650887508753377666445568078999999875421----6-50453
Q gi|254780741|r  166 NCENKSFLCF---------SAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYL  231 (367)
Q Consensus       166 gs~~~~~~~~---------~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~i  231 (367)
                      |-|+.+....         .++.+.+ +.+.+.+.+---+|+==|+|    +...+.+.+.++.+.+--    . ..+.+
T Consensus       116 GVQSf~~~~l~~lgR~h~~~~~~~ai-~~~~~~gf~niniDLIyGlP----gQt~~~~~~~l~~~~~l~p~hiS~Y~L~i  190 (374)
T PRK05799        116 GLQAWQNSLLKTLGRIHTFEEFLENY-KLARKLGFNNINVDLMFGLP----NQTLEDWKETLEKVVELSPEHISCYSLII  190 (374)
T ss_pred             ECCCCCHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCEEEEEECCCC----CCCHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf             53358899999847999899999999-99997599746688544898----88789999999999841725013654205


Q ss_pred             EHHHHCC
Q ss_conf             0022014
Q gi|254780741|r  232 EPGEAIV  238 (367)
Q Consensus       232 EPGR~lv  238 (367)
                      |||..+.
T Consensus       191 ~~~t~~~  197 (374)
T PRK05799        191 EEGTPFY  197 (374)
T ss_pred             CCCCHHH
T ss_conf             7886799


No 70 
>pfam00842 Ala_racemase_C Alanine racemase, C-terminal domain.
Probab=60.20  E-value=12  Score=17.17  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=26.9

Q ss_pred             EEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             45998623336664552135-66778879899996887
Q gi|254780741|r  288 YTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       288 ~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      +.+.+.|..|+  |.+.-+. ..++.++||.+.+..-+
T Consensus        60 ~~~pivGrIsM--D~~~idv~~~~~~~~Gd~V~l~G~~   95 (125)
T pfam00842        60 KRAPIVGRVSM--DQTMVDVTDIPDVKVGDEVTLFGPQ   95 (125)
T ss_pred             EEEEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             99301072612--2589955688777789899998999


No 71 
>pfam09561 RE_HpaII HpaII restriction endonuclease. This family includes the HpaII (recognizes and cleaves C^CGG) restriction endonuclease.
Probab=56.22  E-value=5.4  Score=19.54  Aligned_cols=22  Identities=5%  Similarity=0.051  Sum_probs=13.6

Q ss_pred             HHCCC--CEEEECCCHHHHHHHHH
Q ss_conf             61388--68985672059999998
Q gi|254780741|r   89 VLSNC--DTIIFNTVSQLNKFKDK  110 (367)
Q Consensus        89 a~~~~--~~i~iDs~~El~~i~~~  110 (367)
                      +++++  +.+.+++.+++-....+
T Consensus        86 ~Ik~~~~~~fs~~~~e~fl~~i~i  109 (355)
T pfam09561        86 AIKNSSNRVFSIPGIEEFLNAIGI  109 (355)
T ss_pred             HHHCCCCCEECCCCHHHHHHHHCC
T ss_conf             986278864657349999998533


No 72 
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent  decarboxylase in beta-alanine production. Decarboxylation of aspartate is  the major route of beta-alanine production in bacteria, and is catalyzed  by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which  requires a pyruvoyl group for its activity. The pyruvoyl cofactor is  covalently bound to the enzyme. The protein is synthesized as a  proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an  alpha chain (C-terminal fragment) and beta chain (N-terminal fragment),  and the pyruvoyl group. Beta-alanine is required for the biosynthesis of  pantothenate, in which the enzyme plays a critical regulatory role. The  active site of the tetrameric enzyme is located at the interface of two  subunits, with a Lysine and a Histidine from the beta chain of one  subunit forming the active site with residues from the alpha chain of  the adjacent subunit. This alignment 
Probab=55.55  E-value=15  Score=16.67  Aligned_cols=61  Identities=15%  Similarity=0.074  Sum_probs=39.2

Q ss_pred             CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf             478645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG  349 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g  349 (367)
                      .+.-++|.+-|+-= |+.+-..-.--...++||.++|..-+-+......+|    .|.++++++++
T Consensus        51 G~Rf~TYvI~g~~g-Sg~I~lNGaAA~~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N  111 (111)
T cd06919          51 GARFETYVIPGERG-SGVICLNGAAARLGQPGDRVIIMAYALMDEEEAEGH----KPKVVLVDEKN  111 (111)
T ss_pred             CCEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCC
T ss_conf             94789999864688-876874667862179999999998763798897168----77799978999


No 73 
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.98  E-value=17  Score=16.30  Aligned_cols=108  Identities=13%  Similarity=0.142  Sum_probs=62.6

Q ss_pred             CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEECCC----CCCCCCCCCCHHH
Q ss_conf             435742788887431496066530565666147899999999989865--0887508753377----6664455680789
Q gi|254780741|r  141 SRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH--FITQIEWISLGGG----IHFTDKDYPVKDF  214 (367)
Q Consensus       141 skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~--~~~~l~~idiGGG----~~~~~~~~~~~~~  214 (367)
                      +.|+-..+++.+....-+.|+++-.|.+..--..+-+.++.+.+..+-  +...++|---+|-    +|.++.+...+-.
T Consensus        42 G~~~~~f~~~rer~Pv~lHGlslslgg~~~ld~~~l~~~k~li~r~~~~~~SeHL~~~~~~g~~yDLlPlP~teea~~~v  121 (282)
T COG3220          42 GPARAAFDAVRERLPVALHGLSLSLGGQAPLDLDLLRRIKALIKRYDPAFFSEHLSYCTDDGHLYDLLPLPFTEEAVDHV  121 (282)
T ss_pred             CHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHEEEECCCCEEECCCCCCCCHHHHHHH
T ss_conf             82888999998608846530111247899989999999999998737025422114642698330156676519999999


Q ss_pred             HHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEE
Q ss_conf             9999987542165045300220145741888788
Q gi|254780741|r  215 CQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTV  248 (367)
Q Consensus       215 ~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V  248 (367)
                      |+.|+++.+.....|.+|==.+-....+....+|
T Consensus       122 a~~I~~~Qd~LerplllEN~s~Y~~~~~~~m~E~  155 (282)
T COG3220         122 AARIREVQDVLERPLLLENPSYYLHSPCSAMNEV  155 (282)
T ss_pred             HHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHH
T ss_conf             9999999998668636307301025665431379


No 74 
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=51.61  E-value=6.5  Score=19.01  Aligned_cols=52  Identities=17%  Similarity=0.424  Sum_probs=32.3

Q ss_pred             CC-CCEEEEECCCCCCCCCCCCCHHHHHHHHH---HHHHCCCEEEEEHHHHCCCCCEEEEEEEEEE
Q ss_conf             88-75087533776664455680789999998---7542165045300220145741888788786
Q gi|254780741|r  190 IT-QIEWISLGGGIHFTDKDYPVKDFCQRLKE---FSEKYSVQIYLEPGEAIVTNTTTLNTTVLDI  251 (367)
Q Consensus       190 ~~-~l~~idiGGG~~~~~~~~~~~~~~~~i~~---~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~  251 (367)
                      .+ +++-+=||||||        |-|++.+.+   +.+  .++-++.-|+.+=|+||=|-.=-..+
T Consensus       291 LPPdvD~lYiGGGfP--------ElFae~L~~N~~l~~--~i~~f~~~G~P~YGECGGLMYL~~Sl  346 (464)
T TIGR00379       291 LPPDVDALYIGGGFP--------ELFAEELEKNEKLRD--SIKEFIQQGRPIYGECGGLMYLSESL  346 (464)
T ss_pred             CCCCCCEEEECCCCH--------HHHHHHHHHHHHHHH--HHHHHHHCCCEEEEECCCHHHHCCCC
T ss_conf             971215765078852--------453653344489999--99999737883898506044320010


No 75 
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=49.21  E-value=19  Score=16.02  Aligned_cols=64  Identities=14%  Similarity=0.152  Sum_probs=40.2

Q ss_pred             CEEEEEECCCCCCCCEEEEC-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             64599862333666455213-56677887989999688702232434768998877999967990999973
Q gi|254780741|r  287 PYTAMVCGRSCLAGDIFGEF-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE  356 (367)
Q Consensus       287 ~~~~~v~G~~C~~~D~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~  356 (367)
                      -.+|.|.|+-=  .-+++-+ .--...++||.++|..-+-++.....   .+ .|.+++++++++..-..+
T Consensus        54 f~TYvI~g~rG--Sg~I~lNGAAArl~~~GD~VII~sy~~~~e~e~~---~~-~Pkvv~~d~~N~i~~~~~  118 (126)
T COG0853          54 FSTYVIAGERG--SGVICLNGAAARLVQVGDLVIIMSYAQMSEEEAK---TH-KPKVVVVDEKNEIVDVLH  118 (126)
T ss_pred             EEEEEEECCCC--CCEEEECHHHHHHCCCCCEEEEEECCCCCHHHHH---CC-CCEEEEECCCCCHHHHHC
T ss_conf             89999872687--8679756698852688998999986637987973---36-973999889872311214


No 76 
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B  (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20).  The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits.  Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff.  Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in 
Probab=48.52  E-value=19  Score=15.95  Aligned_cols=23  Identities=13%  Similarity=0.365  Sum_probs=14.6

Q ss_pred             CCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf             98885689779999999999999
Q gi|254780741|r    1 MIKTPYYLIDKQKLLNNLDTALY   23 (367)
Q Consensus         1 ~i~TP~yv~d~~~i~~n~~~~~~   23 (367)
                      ||.+-=+-++.+.|++-+..+..
T Consensus         7 mlDvaR~f~~~~~ik~~id~ma~   29 (348)
T cd06562           7 LLDTSRHFLSVDSIKRTIDAMAY   29 (348)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH
T ss_conf             66637887689999999999998


No 77 
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide.  CobB belongs to the triad family of amidotransferases.  Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=47.19  E-value=9.2  Score=18.02  Aligned_cols=49  Identities=20%  Similarity=0.303  Sum_probs=24.6

Q ss_pred             HCCCCCEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEEHHHHC
Q ss_conf             5088750875337766644556--8078999999875421650453002201
Q gi|254780741|r  188 HFITQIEWISLGGGIHFTDKDY--PVKDFCQRLKEFSEKYSVQIYLEPGEAI  237 (367)
Q Consensus       188 ~~~~~l~~idiGGG~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~iEPGR~l  237 (367)
                      +-.++++-|=||||+|=.+.+.  ....+.+.|++..++ +..++-|.|=++
T Consensus        36 ~~lP~~d~lylgGGyPE~~a~~Ls~N~~~~~~ir~~~~~-G~PiyAECGGlM   86 (198)
T cd03130          36 EELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAES-GGPIYAECGGLM   86 (198)
T ss_pred             CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECHHHH
T ss_conf             889987689827998758899997679999999999984-997799820488


No 78 
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=46.94  E-value=20  Score=15.79  Aligned_cols=109  Identities=14%  Similarity=0.105  Sum_probs=56.3

Q ss_pred             CHHHHHHH--HHHHHHHHHHCCCCCEEEEECCCC---CCCCCCCCCHHHHHHHHHHHHHCCCEEEE---EHHHHCCCCCE
Q ss_conf             14789999--999998986508875087533776---66445568078999999875421650453---00220145741
Q gi|254780741|r  171 SFLCFSAM--LKNIEKEFGHFITQIEWISLGGGI---HFTDKDYPVKDFCQRLKEFSEKYSVQIYL---EPGEAIVTNTT  242 (367)
Q Consensus       171 ~~~~~~~~--l~~~~~~~~~~~~~l~~idiGGG~---~~~~~~~~~~~~~~~i~~~~~~~~~~l~i---EPGR~lv~~ag  242 (367)
                      ++..+++.  .+.+.+.+.+.+.+=-+||+||-+   +-+..+.|                +++-+   +.+|      +
T Consensus       171 DLggIAKGy~vD~~~~~l~~~gi~~~lV~~GG~i~~~G~~~~g~p----------------W~IgI~~P~~~~------~  228 (337)
T COG1477         171 DLGGIAKGYAVDKAAEALEAEGIKSALVNLGGEIRVIGKNPDGKP----------------WRIGIQNPFAPR------G  228 (337)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCEEEECCCCCCCC----------------CEEEEECCCCCC------C
T ss_conf             553034658999999999874861103643760688614899998----------------679973888887------7


Q ss_pred             EEEEEEEEEE-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCEEEECCC
Q ss_conf             8887887863-------044333433335656566400134553000247-86459986233366645521356
Q gi|254780741|r  243 TLNTTVLDIS-------ENIKNLVIVDSSVEAHVPDYLLYQESATIYPNT-GPYTAMVCGRSCLAGDIFGEFHF  308 (367)
Q Consensus       243 ~lv~~V~~~K-------~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~G~~C~~~D~l~~~~~  308 (367)
                      . +-.|+.++       -++.+|..+|+-..+|+.+..-..      |-+ .....+|.-+.|+..|-|....+
T Consensus       229 ~-~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~HilDP~TG~------P~~~~~~sVTVia~~~~~ADalaTal~  295 (337)
T COG1477         229 A-VQGIVPLKDGAVATSGDYERYFEVDGKRYHHILDPKTGY------PIEHDLASVTVIAPSSMDADALATALF  295 (337)
T ss_pred             C-EEEEEECCCCEEECCCCCEEEEEECCEEEEEECCCCCCC------CCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf             6-057995279669725672568897897876550899998------875786169998588600788998887


No 79 
>TIGR00223 panD aspartate 1-decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process.
Probab=46.83  E-value=11  Score=17.47  Aligned_cols=62  Identities=19%  Similarity=0.236  Sum_probs=41.9

Q ss_pred             CCCEEEEEECCCCCCCC-EEEEC-CCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEEECCCCEEE
Q ss_conf             78645998623336664-55213-5667788798999968870223243-4768998877999967990999
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGD-IFGEF-HFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVKNVDGTIKA  353 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D-~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~~~~g~~~~  353 (367)
                      +.-+||.|.|.-  -|. ++|-+ .--...++||.++|.   +|. +|+ ..-+.+ +|.+++++++++.+.
T Consensus        53 ~RfsTY~I~gkk--RGs~~IcvNGAAAr~v~~GD~VII~---sy~-~M~d~Ea~~h-~P~va~~~~~Nei~~  117 (127)
T TIGR00223        53 KRFSTYVIAGKK--RGSRVICVNGAAARLVSVGDVVIIL---SYV-TMSDEEARAH-KPKVALLEDDNEIKR  117 (127)
T ss_pred             CCEEEEEECCCC--CCCEEEEECHHHHCEECCCCEEEEE---EEC-CCCHHHHHHC-CCEEEEECCCCHHHH
T ss_conf             712346651423--5872377050451100238899988---515-7885887524-980799819716787


No 80 
>TIGR01379 thiL thiamine-monophosphate kinase; InterPro: IPR006283   This family represents thiamine-monophosphate kinase, an enzyme that converts thiamine monophosphate into thiamine pyrophosphate (TPP, coenzyme B1), an enzyme cofactor. Thiamine monophosphate may be derived from de novo synthesis or from unphosphorylated thiamine, known as vitamin B1. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step. ; GO: 0009030 thiamin phosphate kinase activity, 0009228 thiamin biosynthetic process.
Probab=44.97  E-value=21  Score=15.60  Aligned_cols=72  Identities=19%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             6066530565666147899999999989865088750875337766644556807899999987542165045
Q gi|254780741|r  158 VNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIY  230 (367)
Q Consensus       158 i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  230 (367)
                      ++++||-........-.|+...-.+.++++. |-..+|.=+.=|+|-..+...++.|.+-+.+.+++|+++|+
T Consensus        48 ve~~HF~~~~~~Pe~~G~K~~avNlSDlAAm-GA~P~~~~~s~~~P~~~~~~~~~~f~~G~~~~~~~Y~~~Li  119 (336)
T TIGR01379        48 VEGVHFPPDTTPPEDLGWKAVAVNLSDLAAM-GATPKWFLLSLGLPSDLDEAWLEAFYDGLFELAKQYGVDLI  119 (336)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf             2475788677898999999999749999730-57023223100168898889999999999998755398787


No 81 
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=43.99  E-value=22  Score=15.50  Aligned_cols=16  Identities=25%  Similarity=0.362  Sum_probs=9.8

Q ss_pred             CCCCCCCCCHHHHHHH
Q ss_conf             7864357427888874
Q gi|254780741|r  138 RPFSRLGEKCKDKIES  153 (367)
Q Consensus       138 ~~~skfG~~~~~~~~~  153 (367)
                      .|+-.||++..++.+.
T Consensus       143 sPl~e~gitk~eIre~  158 (269)
T COG1606         143 SPLAEFGITKKEIREI  158 (269)
T ss_pred             CHHHHHCCCHHHHHHH
T ss_conf             7188839759999999


No 82 
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=43.89  E-value=22  Score=15.49  Aligned_cols=20  Identities=10%  Similarity=0.147  Sum_probs=10.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHH
Q ss_conf             65666147899999999989
Q gi|254780741|r  166 NCENKSFLCFSAMLKNIEKE  185 (367)
Q Consensus       166 gs~~~~~~~~~~~l~~~~~~  185 (367)
                      |---+..+.|.+.++.+.++
T Consensus       212 GlP~QT~~~~~~tL~~~~~l  231 (453)
T PRK13347        212 GLPHQTVESFRETLDKVIAL  231 (453)
T ss_pred             CCCCCCHHHHHHHHHHHHHC
T ss_conf             48999899999999999831


No 83 
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=43.67  E-value=22  Score=15.47  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=13.6

Q ss_pred             CCCEEEECCCHHHHHHHHHHHC-----CCCCCEEEEEEC
Q ss_conf             8868985672059999998612-----345614899635
Q gi|254780741|r   92 NCDTIIFNTVSQLNKFKDKAQK-----LHKKIGLRINPS  125 (367)
Q Consensus        92 ~~~~i~iDs~~El~~i~~~a~~-----~~~~I~lRinP~  125 (367)
                      +|++-++=+.++|.+|.+..++     ...+|-+-+||+
T Consensus        58 GGGTPs~L~~~~l~~ll~~i~~~f~~~~~~EiTiE~nP~   96 (377)
T PRK08599         58 GGGTPTALSAEQLERLLNAIHRTLPLSDLEEFTFEANPG   96 (377)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf             998100099999999999999976977673279995515


No 84 
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809   There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC)  is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC)  is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits.   This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=41.24  E-value=24  Score=15.22  Aligned_cols=53  Identities=19%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             CCCCEEEEECCCCC---------CCCCCC--------------CCHHHHHHHHHHHHHCC--C----EEE---EEHHHHC
Q ss_conf             88750875337766---------644556--------------80789999998754216--5----045---3002201
Q gi|254780741|r  190 ITQIEWISLGGGIH---------FTDKDY--------------PVKDFCQRLKEFSEKYS--V----QIY---LEPGEAI  237 (367)
Q Consensus       190 ~~~l~~idiGGG~~---------~~~~~~--------------~~~~~~~~i~~~~~~~~--~----~l~---iEPGR~l  237 (367)
                      +..-.|||+|||=-         +=..|.              ..+..|+=+.+..++.+  +    ||-   .|-||-|
T Consensus       281 G~PANFLDvGGGA~~e~v~eA~~~vLsD~~VKvvfiNIFGGI~RCD~vA~G~v~A~~~~~~~VP~VvRL~GTN~E~G~~i  360 (389)
T TIGR01016       281 GKPANFLDVGGGASEERVKEALKLVLSDKSVKVVFINIFGGITRCDEVAKGLVEALKDVGVNVPVVVRLEGTNVEEGKKI  360 (389)
T ss_pred             CCCCEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH
T ss_conf             89530224587889899999989873599820899970686001878878899998318853687898157887888899


Q ss_pred             CCCCE
Q ss_conf             45741
Q gi|254780741|r  238 VTNTT  242 (367)
Q Consensus       238 v~~ag  242 (367)
                      +.++|
T Consensus       361 L~e~g  365 (389)
T TIGR01016       361 LQESG  365 (389)
T ss_pred             HHHHC
T ss_conf             99727


No 85 
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289   Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis .   This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=41.16  E-value=24  Score=15.22  Aligned_cols=132  Identities=13%  Similarity=0.183  Sum_probs=63.0

Q ss_pred             HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHHH----HHHCC
Q ss_conf             78861388---689856720599999986123456148996357744310124557864357427-88887----43149
Q gi|254780741|r   86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KDKIE----SEIKN  157 (367)
Q Consensus        86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~~~~----~~~~~  157 (367)
                      |..|.+++   ..||++|++-+.-|.+-|.+.+-+|.|=+    |.+...+..  ...-..|.+. ..+++    .....
T Consensus         8 L~~A~~~gYAvGaFN~NNlE~~qAIl~AAee~~SPVI~q~----SeGA~KY~G--kGd~~~G~~~~~~mV~~L~E~~~~t   81 (339)
T TIGR01859         8 LQKAKKEGYAVGAFNINNLEWTQAILQAAEEERSPVIVQV----SEGAIKYMG--KGDATLGYKVAVAMVKTLIESMSIT   81 (339)
T ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEH----HHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9998646831142012168999999999987368755312----027874048--5317788999999999999867993


Q ss_pred             C-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHH---HHHHHHHHHHHCC--CEEEE
Q ss_conf             6-0665305656661478999999999898650887508753377666445568078---9999998754216--50453
Q gi|254780741|r  158 V-NGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKD---FCQRLKEFSEKYS--VQIYL  231 (367)
Q Consensus       158 i-~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~---~~~~i~~~~~~~~--~~l~i  231 (367)
                      | +-||.=.||      .|+..++.+..=|...-             +.-...|+|+   ..+.+-++.+..+  +.+-.
T Consensus        82 VPVaLHLDHG~------s~E~c~~AI~aGfsSVM-------------IDgShlP~EEN~~~Tkkvve~Ah~~GDYvSVEa  142 (339)
T TIGR01859        82 VPVALHLDHGS------SYESCIKAIKAGFSSVM-------------IDGSHLPFEENVALTKKVVEIAHAKGDYVSVEA  142 (339)
T ss_pred             EEEEEECCCCC------CHHHHHHHHHCCCCEEE-------------CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             20686468876------48999999964981672-------------024268788888888999999985199799999


Q ss_pred             EHHHHCCCCCE
Q ss_conf             00220145741
Q gi|254780741|r  232 EPGEAIVTNTT  242 (367)
Q Consensus       232 EPGR~lv~~ag  242 (367)
                      |-||--=-.=+
T Consensus       143 ElG~~gG~ED~  153 (339)
T TIGR01859       143 ELGTIGGIEDG  153 (339)
T ss_pred             EECEECCEECC
T ss_conf             84303527627


No 86 
>KOG0996 consensus
Probab=41.14  E-value=9.4  Score=17.96  Aligned_cols=27  Identities=15%  Similarity=0.247  Sum_probs=18.1

Q ss_pred             HHHHHHHH--CCCCEEEECCCHHHHHHHH
Q ss_conf             03478861--3886898567205999999
Q gi|254780741|r   83 DCEIDAVL--SNCDTIIFNTVSQLNKFKD  109 (367)
Q Consensus        83 ~~el~~a~--~~~~~i~iDs~~El~~i~~  109 (367)
                      ++.++.|.  ....++++||++|-.+++.
T Consensus       704 d~~~r~aFYfaLrdtLV~d~LeQAtRiay  732 (1293)
T KOG0996         704 DEKFRPAFYFALRDTLVADNLEQATRIAY  732 (1293)
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             78879999999850455167899888863


No 87 
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=40.13  E-value=25  Score=15.11  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=14.5

Q ss_pred             CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf             6459986233366645521356677887989999
Q gi|254780741|r  287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISF  320 (367)
Q Consensus       287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i  320 (367)
                      .....|+|..|++.     -.++.-+++|+...|
T Consensus       326 d~r~NVvG~I~~~d-----~~LLd~I~p~~~F~f  354 (357)
T pfam05913       326 DERVNVVGRIIEED-----LPLLDYIKPGQKFKL  354 (357)
T ss_pred             CCCEEEEEEECHHH-----HHHHHHCCCCCEEEE
T ss_conf             88634789988888-----779986589980788


No 88 
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=39.52  E-value=26  Score=15.05  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=25.5

Q ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             689856720599999986123456148996357
Q gi|254780741|r   94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV  126 (367)
Q Consensus        94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~  126 (367)
                      .++.+++.....++.+..++.+.+.||=+||+.
T Consensus        85 it~H~Ea~~~~~~~i~~Ik~~g~k~GlAlnP~T  117 (210)
T PRK08005         85 IFIHAESVQNPSEILADIRAIGAKAGLALNPAT  117 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             999356776999999999974980788837999


No 89 
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=39.22  E-value=26  Score=15.08  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=11.9

Q ss_pred             HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             887431496066530565666147899999999
Q gi|254780741|r  150 KIESEIKNVNGLMFHNNCENKSFLCFSAMLKNI  182 (367)
Q Consensus       150 ~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~  182 (367)
                      ++..+.-++.||=|-. +-+.....|.-.|...
T Consensus        19 ~vs~L~GKvVgLYFSA-~WCpPCr~FTP~L~~f   50 (146)
T cd03008          19 IVARLENRVLLLFFGA-VVSPQCQLFAPKLKDF   50 (146)
T ss_pred             HHHHCCCCEEEEEEEC-CCCCHHHHHHHHHHHH
T ss_conf             9998189999999747-8681487677899999


No 90 
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=38.99  E-value=26  Score=15.00  Aligned_cols=72  Identities=13%  Similarity=0.162  Sum_probs=30.0

Q ss_pred             CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             6066530565666147899999999989865088750875337766644556807899999987542165045
Q gi|254780741|r  158 VNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIY  230 (367)
Q Consensus       158 i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  230 (367)
                      ++|.||+.....-..-.|..+...+.++++.- -...++=+.=++|...+...++++.+-+.+.++++++.++
T Consensus        48 ve~~HF~~~~~~p~~iG~~av~~n~SDiaamG-a~P~~~~~sl~lP~~~~~~~l~~i~~Gi~~~~~~~gv~lv  119 (320)
T PRK05731         48 VEGVHFRPDWSSPEDLGYKALAVNLSDLAAMG-ARPAAFLLALALPKDVDEAWLEALADGLFALADRYGAELI  119 (320)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf             65767787889999999999998788899718-9722788850268864399999999999999998395696


No 91 
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II; InterPro: IPR006411   Members of this family are class II examples of the glycolytic enzyme fructose-bisphosphate aldolase (FBA). They represent one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterised proteins. This family is well-conserved and includes characterised FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis.
Probab=38.62  E-value=27  Score=14.96  Aligned_cols=88  Identities=14%  Similarity=0.095  Sum_probs=38.2

Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HCCCEEEEECC--CCCCCCHHHHHHHH
Q ss_conf             999999861234561489963577443101245578643574278888743--14960665305--65666147899999
Q gi|254780741|r  104 LNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE--IKNVNGLMFHN--NCENKSFLCFSAML  179 (367)
Q Consensus       104 l~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~--~~~i~Gih~H~--gs~~~~~~~~~~~l  179 (367)
                      -+.+..+|+..+..|. |+.-++.+.+.-      +  .|....-+.-++.  ..+-=.++-|-  +|....-+.++-.-
T Consensus        92 A~~~h~iA~~YGvPVv-rLHTDHCAKkLL------p--sw~dGlLe~~ek~f~~~G~PLFsSHM~DLSeep~~ENi~ic~  162 (365)
T TIGR01520        92 AHYVHSIAEHYGVPVV-RLHTDHCAKKLL------P--SWVDGLLEADEKYFSAHGKPLFSSHMLDLSEEPIEENIEICV  162 (365)
T ss_pred             HHHHHHHHHHCCCCEE-EECCCCCCCCCC------C--CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             8899987532788827-735775741047------3--203776434468996489977100231234376577899999


Q ss_pred             HHHHHHHHHCCCCCEE-EEECCC
Q ss_conf             9999898650887508-753377
Q gi|254780741|r  180 KNIEKEFGHFITQIEW-ISLGGG  201 (367)
Q Consensus       180 ~~~~~~~~~~~~~l~~-idiGGG  201 (367)
                      +++.+. ++...-|+. |=|-||
T Consensus       163 kyLkRm-A~~~~~LEiEiGitGG  184 (365)
T TIGR01520       163 KYLKRM-AAIKMWLEIEIGITGG  184 (365)
T ss_pred             HHHHHH-HHHCCCEEEEECCCCC
T ss_conf             999865-0411303412312365


No 92 
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway.  The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.99  E-value=28  Score=14.80  Aligned_cols=23  Identities=13%  Similarity=0.096  Sum_probs=14.4

Q ss_pred             CCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf             98885689779999999999999
Q gi|254780741|r    1 MIKTPYYLIDKQKLLNNLDTALY   23 (367)
Q Consensus         1 ~i~TP~yv~d~~~i~~n~~~~~~   23 (367)
                      ||.+==+-++.+.|++.+..+..
T Consensus         6 mLD~aR~f~s~~~ik~~ID~Ma~   28 (326)
T cd06564           6 MLDVGRKYYSMDFLKDIIKTMSW   28 (326)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH
T ss_conf             78636888589999999999998


No 93 
>pfam05114 DUF692 Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.
Probab=36.42  E-value=29  Score=14.74  Aligned_cols=93  Identities=11%  Similarity=0.085  Sum_probs=54.4

Q ss_pred             HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEECCC----CCCCCCCCCCHHHHHHHHH
Q ss_conf             788887431496066530565666147899999999989865--0887508753377----6664455680789999998
Q gi|254780741|r  147 CKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH--FITQIEWISLGGG----IHFTDKDYPVKDFCQRLKE  220 (367)
Q Consensus       147 ~~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~--~~~~l~~idiGGG----~~~~~~~~~~~~~~~~i~~  220 (367)
                      .+++.+....-+.|++.-+||...-...+-+.++.+.+.++-  +-..+.|.-.||-    +|+++....++-.++.+++
T Consensus        47 L~~i~e~yPv~~HGv~LSlGs~~~ld~~~L~~l~~l~~~~~~~~~SeHL~ws~~~g~l~dLLPlP~T~eal~~v~~ri~~  126 (275)
T pfam05114        47 LDRLRERLPVALHGLSLSLGGAAPLDAELLRALKELAERHDPPLVSEHLSYCRDGGHLYDLLPLPFTEEAVDHVAERIRV  126 (275)
T ss_pred             HHHHHHHCCEECCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99999729976035640258999879999999999999758773616325761698435567656789999999999999


Q ss_pred             HHHHCCCEEEEEHHHHCCC
Q ss_conf             7542165045300220145
Q gi|254780741|r  221 FSEKYSVQIYLEPGEAIVT  239 (367)
Q Consensus       221 ~~~~~~~~l~iEPGR~lv~  239 (367)
                      ..+.++..+.+|==.+.+.
T Consensus       127 vQd~L~rplllEN~S~Y~~  145 (275)
T pfam05114       127 AQDALERPLAVENISYYLH  145 (275)
T ss_pred             HHHHHCCCEEEECHHHHCC
T ss_conf             9998588679836788537


No 94 
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.59  E-value=30  Score=14.65  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=39.3

Q ss_pred             EEHHHHCCCCCEEEEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC
Q ss_conf             3002201457418887887863044-333433335656566400134553000247864599862333666455213566
Q gi|254780741|r  231 LEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFE  309 (367)
Q Consensus       231 iEPGR~lv~~ag~lv~~V~~~K~~~-~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~  309 (367)
                      +++|+.++++-| ++.+|..+.++. +-..+.|..           ...+....+.+-....-.+..|..... -....-
T Consensus       144 V~~~~~Vi~~~G-LVG~V~~V~~~tS~V~Lltd~~-----------~~i~v~i~r~~~~~i~~~d~~~~~l~~-~~~~~~  210 (284)
T COG1792         144 IKKGMPVVAEGG-LVGKVVEVSKNTSRVLLLTDVN-----------SKIPVKINRGDIGVIVGGDGENDLLLL-VYLPPN  210 (284)
T ss_pred             CCCCCEEEECCC-CEEEEEEECCCEEEEEEEECCC-----------CCEEEEECCCCCEEEEECCCCCCCEEE-EECCCC
T ss_conf             668964796683-1899999727656999842466-----------103688515650489952788862236-623676


Q ss_pred             CCCCCCCEEEEECCC
Q ss_conf             778879899996887
Q gi|254780741|r  310 KPVKIGDRISFEDVA  324 (367)
Q Consensus       310 ~~l~~GD~l~i~~~G  324 (367)
                      .+++.||.++-..-|
T Consensus       211 ~~i~~GD~vvTSGlg  225 (284)
T COG1792         211 SDIKEGDLVVTSGLG  225 (284)
T ss_pred             CCCCCCCEEEECCCC
T ss_conf             776678889966789


No 95 
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945   Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC).   Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=35.55  E-value=30  Score=14.65  Aligned_cols=50  Identities=16%  Similarity=0.269  Sum_probs=35.9

Q ss_pred             CCCCCCEE--EEEC-CC-CHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHH
Q ss_conf             78879899--9968-87-02232434768998877999967990999973898999874
Q gi|254780741|r  311 PVKIGDRI--SFED-VA-GYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNN  365 (367)
Q Consensus       311 ~l~~GD~l--~i~~-~G-AY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~  365 (367)
                      .+.+||++  .+.. .| .|+....=-| |+|    +-.++||+++++.--+.+|+.+.
T Consensus       260 GTpeG~~vSm~V~sp~GNpYGip~Gi~f-SfP----v~~~~~G~w~iV~Gl~~~df~r~  313 (329)
T TIGR01759       260 GTPEGDWVSMGVYSPDGNPYGIPEGIIF-SFP----VTSKGDGEWEIVEGLELDDFVRK  313 (329)
T ss_pred             CCCCCCEEEEEEECCCCCCCCCCCCCEE-ECC----EEEEECCEEEEECCCCCCHHHHH
T ss_conf             9899762676653788787878888278-330----68741732797368878989999


No 96 
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains.  The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences.  In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=35.39  E-value=17  Score=16.25  Aligned_cols=40  Identities=13%  Similarity=0.006  Sum_probs=19.9

Q ss_pred             CCHHHHHHHHHHHHHCCCEEE---EEHHHHCCCCCEEEEEEEEEE
Q ss_conf             807899999987542165045---300220145741888788786
Q gi|254780741|r  210 PVKDFCQRLKEFSEKYSVQIY---LEPGEAIVTNTTTLNTTVLDI  251 (367)
Q Consensus       210 ~~~~~~~~i~~~~~~~~~~l~---iEPGR~lv~~ag~lv~~V~~~  251 (367)
                      .+..+++.+++..++  .+++   .-..-.-.|+.-+=|+++.++
T Consensus       166 Nv~r~a~~ike~s~~--aQFIVIThr~~tme~AD~L~GV~~~~~~  208 (212)
T cd03274         166 NVSIVANYIKERTKN--AQFIVISLRNNMFELADRLVGIYKTNNC  208 (212)
T ss_pred             HHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHEEEEEEECCC
T ss_conf             899999999984779--7699998588999851517989973785


No 97 
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=35.37  E-value=30  Score=14.63  Aligned_cols=50  Identities=8%  Similarity=-0.076  Sum_probs=25.4

Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHC
Q ss_conf             898650887508753377666445568078999999875421----6-50453002201
Q gi|254780741|r  184 KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAI  237 (367)
Q Consensus       184 ~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~l  237 (367)
                      +.+.+.+..=--+|+==|+|    ....+++.+.++.+.+--    . -.|.+|||..+
T Consensus       146 ~~~r~~Gf~nIsiDLIyGlP----gQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~  200 (353)
T PRK05904        146 NLLHKNGIYNISCDFLYCLP----ILKLKDLDEVFNFILKHKINHISFYSLEIKEGSIL  200 (353)
T ss_pred             HHHHHHCCCEEEECEEECCC----CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHH
T ss_conf             99998199736004263599----99999999999999965999178888898579732


No 98 
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.19  E-value=31  Score=14.51  Aligned_cols=19  Identities=11%  Similarity=0.179  Sum_probs=9.3

Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q ss_conf             6566614789999999998
Q gi|254780741|r  166 NCENKSFLCFSAMLKNIEK  184 (367)
Q Consensus       166 gs~~~~~~~~~~~l~~~~~  184 (367)
                      |--.+..+.|++.++.+..
T Consensus       213 GLP~QT~~~~~~tl~~~~~  231 (456)
T PRK09249        213 GLPKQTPESFARTLEKVLE  231 (456)
T ss_pred             CCCCCCHHHHHHHHHHHHC
T ss_conf             6998769999999999965


No 99 
>PRK13518 carboxylate-amine ligase; Provisional
Probab=33.98  E-value=32  Score=14.49  Aligned_cols=140  Identities=12%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC----HHHHHHHH-----HCCCEEEEECCCCCCCCH
Q ss_conf             059999998612345614899635774431012455786435742----78888743-----149606653056566614
Q gi|254780741|r  102 SQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK----CKDKIESE-----IKNVNGLMFHNNCENKSF  172 (367)
Q Consensus       102 ~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~----~~~~~~~~-----~~~i~Gih~H~gs~~~~~  172 (367)
                      .||..+.....+.-.+.++|+-   ..++|+...    +...-++    +.++.+..     ..-+.|.|+|+|....+ 
T Consensus        75 ~~L~~~R~~l~~aA~~~G~~l~---a~GThP~~~----w~~~~it~~~RY~~l~~~~~~~ar~~li~G~HVHVGv~d~e-  146 (357)
T PRK13518         75 DALREVRDALVAHAEEHGFRIA---AAGLHPGAK----WRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHIHVGVDDPD-  146 (357)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEE---EECCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHH-
T ss_conf             9999999999999998698899---626898888----77688899778999999988999987461037996179789-


Q ss_pred             HHHHHHHHHHHHHHHHC----CCCCEEEEECCCC-----------CCC---CCCCCCHHHHHHHHHHHHHC---CC-EEE
Q ss_conf             78999999999898650----8875087533776-----------664---45568078999999875421---65-045
Q gi|254780741|r  173 LCFSAMLKNIEKEFGHF----ITQIEWISLGGGI-----------HFT---DKDYPVKDFCQRLKEFSEKY---SV-QIY  230 (367)
Q Consensus       173 ~~~~~~l~~~~~~~~~~----~~~l~~idiGGG~-----------~~~---~~~~~~~~~~~~i~~~~~~~---~~-~l~  230 (367)
                       .-..++..+...+..+    ..+.=|---=-||           |-.   ..-.++++|...+..+.+.-   +. .+|
T Consensus       147 -~av~v~n~lr~~LP~LlALSAnSPFw~G~DTG~aS~R~~~~~~~P~aG~P~~f~s~~~y~~~v~~L~~tG~I~d~~~i~  225 (357)
T PRK13518        147 -KAVWVANELRWHMPVLLALSANSPYWNGFDTGLASARAKIFEALPNTGMPTAFEDYEAFQAFERRMVETGSIEDRGELW  225 (357)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             -9999999888778999999717942048888751089999972764799954489999999999999739827788458


Q ss_pred             --EEHHHHCCCCCEEEEEEEEEEECC
Q ss_conf             --300220145741888788786304
Q gi|254780741|r  231 --LEPGEAIVTNTTTLNTTVLDISEN  254 (367)
Q Consensus       231 --iEPGR~lv~~ag~lv~~V~~~K~~  254 (367)
                        +=    .....+++-.||-|+--+
T Consensus       226 WDiR----Ps~~~pTvEvRV~D~~~~  247 (357)
T PRK13518        226 YDVR----PHSGHGTVEVRAPDAQAD  247 (357)
T ss_pred             EEEC----CCCCCCCEEEECCCCCCC
T ss_conf             9944----269999725765788899


No 100
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=33.48  E-value=32  Score=14.43  Aligned_cols=19  Identities=5%  Similarity=-0.130  Sum_probs=8.8

Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q ss_conf             6566614789999999998
Q gi|254780741|r  166 NCENKSFLCFSAMLKNIEK  184 (367)
Q Consensus       166 gs~~~~~~~~~~~l~~~~~  184 (367)
                      |--.+..+.|.+.++.+..
T Consensus       168 GlP~Qt~~~~~~~l~~~~~  186 (376)
T PRK05628        168 GTPGETDDDLRRSLDAALE  186 (376)
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             7999999999999999973


No 101
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=33.34  E-value=32  Score=14.42  Aligned_cols=98  Identities=17%  Similarity=-0.002  Sum_probs=45.4

Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHH---------HHHHHHHHHHH
Q ss_conf             561489963577443101245578643574278888743149606653056566614789---------99999999898
Q gi|254780741|r  116 KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCF---------SAMLKNIEKEF  186 (367)
Q Consensus       116 ~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~~~---------~~~l~~~~~~~  186 (367)
                      .+|-+-+||+.-                  +.+.+......+|.-+++  |-|+.+.+..         .++++.+ +.+
T Consensus        86 ~EiTiE~nP~~~------------------~~~~l~~l~~~GvNRiSi--GVQSf~d~~Lk~lgR~H~~~~~~~ai-~~~  144 (351)
T PRK08446         86 CEITTEANPNSA------------------TLAWLKGMKNLGVNRISF--GVQSFHEDKLKFLGRIHSKNQIIKAI-ENA  144 (351)
T ss_pred             CEEEEEECCCCC------------------CHHHHHHHHHCCCCEEEE--EECCCCHHHHHHHCCCCCHHHHHHHH-HHH
T ss_conf             359997676868------------------999999998649876999--73137689999818998899999999-999


Q ss_pred             HHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCC
Q ss_conf             650887508753377666445568078999999875421----6-504530022014
Q gi|254780741|r  187 GHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIV  238 (367)
Q Consensus       187 ~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv  238 (367)
                      .+.+.+---+|+==|+    |....+++.+.++.+.+--    . ..|.+|||..+.
T Consensus       145 r~~gf~niniDLIyGl----P~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~  197 (351)
T PRK08446        145 KKAGFKNISIDLIYNT----KLDNKKLLKEELKLAKELPITHLSAYALTIEENTPFE  197 (351)
T ss_pred             HHCCCCEECHHHHCCC----CCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHH
T ss_conf             9849963422553179----9999999999999997489697974230446998233


No 102
>PRK13516 carboxylate-amine ligase; Provisional
Probab=32.86  E-value=33  Score=14.37  Aligned_cols=65  Identities=15%  Similarity=0.114  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHH-----CCCEEEEECCCCCCCC
Q ss_conf             59999998612345614899635774431012455-786435742788887431-----4960665305656661
Q gi|254780741|r  103 QLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPN-RPFSRLGEKCKDKIESEI-----KNVNGLMFHNNCENKS  171 (367)
Q Consensus       103 El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~-~~~skfG~~~~~~~~~~~-----~~i~Gih~H~gs~~~~  171 (367)
                      ||..+.........+.++|+-   ..++|+..... .+-+. +.-+.++.+...     .-+.|.|+|+|....+
T Consensus        75 ~L~~~R~~l~~~A~~~g~~l~---a~GthP~~~~~~~~it~-~~RY~~l~~~~~~~a~~~~i~G~HVHVgv~d~e  145 (372)
T PRK13516         75 QLSAMRDVLVQAADDLNLGIC---GGGTHPFQQWQRQRICD-NPRFQYLSELYGYLAKQFTVFGQHVHIGCPSGD  145 (372)
T ss_pred             HHHHHHHHHHHHHHHCCCEEE---CCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHH
T ss_conf             999999999999998298776---33789888755477896-278999999999999988461026884579788


No 103
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088   Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=32.85  E-value=33  Score=14.37  Aligned_cols=16  Identities=31%  Similarity=0.509  Sum_probs=10.6

Q ss_pred             HCCCCCEEEEECCCCC
Q ss_conf             5088750875337766
Q gi|254780741|r  188 HFITQIEWISLGGGIH  203 (367)
Q Consensus       188 ~~~~~l~~idiGGG~~  203 (367)
                      ++..-=+.||+|||++
T Consensus       146 ~L~~V~~lIDVGGGIG  161 (306)
T TIGR02716       146 KLDDVKKLIDVGGGIG  161 (306)
T ss_pred             HHHCCCEEEECCCCHH
T ss_conf             1631325433388877


No 104
>PRK12425 fumarate hydratase; Provisional
Probab=32.79  E-value=28  Score=14.81  Aligned_cols=31  Identities=19%  Similarity=0.317  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6147899999999989865088750875337
Q gi|254780741|r  170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG  200 (367)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG  200 (367)
                      +.+..|+..++...+.+.+....+..+++||
T Consensus       197 Qef~~~a~~l~~~~~rl~~~~~~l~~l~lGg  227 (464)
T PRK12425        197 QELSAFVAQLDYAERAIRAALPAVYELAQGG  227 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             8999999999999999999999999852776


No 105
>TIGR02062 RNase_B exoribonuclease II; InterPro: IPR011804    This family consists of exoribonuclease II (RNase II), the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.; GO: 0003723 RNA binding, 0008859 exoribonuclease II activity, 0006401 RNA catabolic process.
Probab=32.50  E-value=33  Score=14.33  Aligned_cols=66  Identities=17%  Similarity=0.314  Sum_probs=51.3

Q ss_pred             CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCEEE
Q ss_conf             5741888788786304433343333565656640013455300024786459986233366-64552
Q gi|254780741|r  239 TNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLA-GDIFG  304 (367)
Q Consensus       239 ~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~-~D~l~  304 (367)
                      +.-.-+-++|+||.+.|-+.=.|+-|...+||.++++.-...+..+...-+..|-|-+.+- +|++-
T Consensus       581 ~~~~~F~AEi~Dv~R~G~Rv~LleNGA~~FIPA~~Lh~~keel~~n~e~G~v~Ikge~~YKi~D~~~  647 (664)
T TIGR02062       581 AKNTRFEAEIVDVSRAGMRVRLLENGASAFIPAAFLHDNKEELVCNQEEGTVYIKGEVVYKIGDVIE  647 (664)
T ss_pred             CCCCCEEEEEEEECCCCCEEEEECCCCCHHCCHHHHCCCCCEEEEECCCCEEEEEEEEEEEEEEEEE
T ss_conf             3686124468872478743431205631111434430332136650687638871078986610699


No 106
>PRK05409 hypothetical protein; Provisional
Probab=32.44  E-value=33  Score=14.32  Aligned_cols=153  Identities=11%  Similarity=0.119  Sum_probs=77.0

Q ss_pred             HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEECCC-----CCCCCCCCCCHHHHHHHHH
Q ss_conf             88887431496066530565666147899999999989865--0887508753377-----6664455680789999998
Q gi|254780741|r  148 KDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH--FITQIEWISLGGG-----IHFTDKDYPVKDFCQRLKE  220 (367)
Q Consensus       148 ~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~--~~~~l~~idiGGG-----~~~~~~~~~~~~~~~~i~~  220 (367)
                      +++.+....-+.|+..=+||...-...+-+.++.+.+.++-  +-..+.|--.+|-     +|+++....++-+++.++.
T Consensus        51 ~~i~e~~Pv~~HGv~LSlGs~~~ld~~~L~~l~~l~~~~~~~~~SeHL~~s~~~g~~l~dLLPlP~T~eal~~v~~ri~~  130 (283)
T PRK05409         51 RAIRERYPLSLHGVSLSLGGAAPLDKDHLKRLKALADRYQPALVSEHLAWSSHGGHHLYDLLPLPYTEEALDHVAERIDQ  130 (283)
T ss_pred             HHHHHHCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             99996098553012121478898999999999999998586311041356506982304357767789999999999999


Q ss_pred             HHHHCCCEEEEEHHHHCCCCCEEEEEEEEEE----ECCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             7542165045300220145741888788786----304433343333------565656640013455300024786459
Q gi|254780741|r  221 FSEKYSVQIYLEPGEAIVTNTTTLNTTVLDI----SENIKNLVIVDS------SVEAHVPDYLLYQESATIYPNTGPYTA  290 (367)
Q Consensus       221 ~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~----K~~~~~~v~vd~------g~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (367)
                      ..+.++.++.+|-=.+.+.-.+.-..+.-..    ++++ -.+.+|.      +.|+...|.-+.    ...|...-...
T Consensus       131 vQd~L~r~lllEN~s~Y~~~~~~~m~E~eFl~~l~~~tg-cgLLLDvnNvyVna~Nhg~Dp~~~l----~~lP~~rV~ei  205 (283)
T PRK05409        131 VQDILGRPLLLENPSSYLAFPDSEMSEWEFLNEVAERTG-CGLLLDVNNVYVNAVNHGFDPLAYL----DALPLERVAYI  205 (283)
T ss_pred             HHHHHCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHCC-CEEEEEECCCEEEEECCCCCHHHHH----HHCCHHHHEEE
T ss_conf             999859985871668754788788799999999998639-7199973340453000799999999----84899782656


Q ss_pred             EEECCCCCCCCEEEE
Q ss_conf             986233366645521
Q gi|254780741|r  291 MVCGRSCLAGDIFGE  305 (367)
Q Consensus       291 ~v~G~~C~~~D~l~~  305 (367)
                      +|+|..-..++.+.+
T Consensus       206 HlAG~~~~~~~~~iD  220 (283)
T PRK05409        206 HLAGHDDEGGDLLID  220 (283)
T ss_pred             ECCCCCCCCCCEEEE
T ss_conf             655665668985785


No 107
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.94  E-value=34  Score=14.27  Aligned_cols=30  Identities=13%  Similarity=0.262  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             478999999999898650887508753377
Q gi|254780741|r  172 FLCFSAMLKNIEKEFGHFITQIEWISLGGG  201 (367)
Q Consensus       172 ~~~~~~~l~~~~~~~~~~~~~l~~idiGGG  201 (367)
                      .+.+..+++.+.++|.+.+...++|.|||-
T Consensus       179 y~fl~~vl~ev~~lF~~~~~P~~yiHiGGD  208 (445)
T cd06569         179 YRFVDKVIDEIARMHQEAGQPLTTIHFGGD  208 (445)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf             999999999999998634798533664243


No 108
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=31.92  E-value=12  Score=17.27  Aligned_cols=19  Identities=16%  Similarity=0.270  Sum_probs=9.3

Q ss_pred             HHHHHCCCCCE------EEEECCCC
Q ss_conf             89865088750------87533776
Q gi|254780741|r  184 KEFGHFITQIE------WISLGGGI  202 (367)
Q Consensus       184 ~~~~~~~~~l~------~idiGGG~  202 (367)
                      +.+++-+++|+      .|-+|||.
T Consensus        38 yylA~~gPDLKv~vlEr~la~GGG~   62 (283)
T TIGR00292        38 YYLAKEGPDLKVVVLERKLAFGGGS   62 (283)
T ss_pred             HHHHHCCCCEEEEEEEECCCCCCCC
T ss_conf             9998429980699985110268986


No 109
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776    This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=31.27  E-value=35  Score=14.20  Aligned_cols=206  Identities=14%  Similarity=0.182  Sum_probs=89.2

Q ss_pred             EECCCCHHHHHHHHH---------HCCEEEEECH------HH-HHHHHCCCCCCCEE--E---C-CCCC---H----HHH
Q ss_conf             410599999999985---------1874898079------99-98987368801088--5---3-7778---0----347
Q gi|254780741|r   36 LKCFAAWGMFDTLNQ---------YMDGTTSSSL------YE-VMLGHEKFGGETHA--Y---N-VAYK---D----CEI   86 (367)
Q Consensus        36 ~KaN~~~~il~~l~~---------~g~g~dv~S~------~E-~~la~~g~~~~~i~--~---~-~~~~---~----~el   86 (367)
                      |.+-.-..||+.|-+         .|+=||++=-      .| ||.-++..+..++.  .   | -+++   |    ..+
T Consensus        18 mRteDMLPi~~~LD~vGfwSLEvWGGATFDaC~RFL~EDPW~RLR~lk~~~pnT~L~MLLRGQNLlGYRHYADDVVe~FV   97 (616)
T TIGR01108        18 MRTEDMLPILEKLDDVGFWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTKLQMLLRGQNLLGYRHYADDVVEAFV   97 (616)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf             57313689998750249556520244105578442488855899999973578751234204542344158436899999


Q ss_pred             HHHHCCC-CEE-EECCCHHHHHHHHH---HHCCCC-CCEEEEEECCCCCCC-CCC-CCCCCCCCCCCCH-----------
Q ss_conf             8861388-689-85672059999998---612345-614899635774431-012-4557864357427-----------
Q gi|254780741|r   87 DAVLSNC-DTI-IFNTVSQLNKFKDK---AQKLHK-KIGLRINPSVSYSKF-ILA-DPNRPFSRLGEKC-----------  147 (367)
Q Consensus        87 ~~a~~~~-~~i-~iDs~~El~~i~~~---a~~~~~-~I~lRinP~~~~~~~-~~~-~~~~~~skfG~~~-----------  147 (367)
                      +.|++|| ..| ++|.++.-.++..-   +|++++ .|=.=|.-.+|..++ +.| +-+.+--.+|++.           
T Consensus        98 ~~a~~NG~DVFRiFDALND~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~IKDMaGlLT  177 (616)
T TIGR01108        98 KKAVENGLDVFRIFDALNDPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEKYLELAKELLEMGVDSICIKDMAGLLT  177 (616)
T ss_pred             HHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             99997598089951245887789999999997389789999712468436788899999999981886055202004644


Q ss_pred             ----HHHHHHHHCCCEE-EEECCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--------CC---
Q ss_conf             ----8888743149606-653056566614---7899999999989865088750875337766644--------55---
Q gi|254780741|r  148 ----KDKIESEIKNVNG-LMFHNNCENKSF---LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTD--------KD---  208 (367)
Q Consensus       148 ----~~~~~~~~~~i~G-ih~H~gs~~~~~---~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~--------~~---  208 (367)
                          -|+..+....+ | +-.|+|||+..-   -++.++++.=.+.++-   -++-+.-|=|+|.+.        -.   
T Consensus       178 P~~AYELV~alK~~~-~n~pvhLH~H~TtGmA~~AllkA~EAG~d~iDT---AisS~S~gtSHPptE~lv~~L~~~gyD~  253 (616)
T TIGR01108       178 PKVAYELVSALKKEF-GNLPVHLHSHATTGMAEMALLKAIEAGADMIDT---AISSMSGGTSHPPTETLVAALRGTGYDT  253 (616)
T ss_pred             HHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHH---CCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             158999999997423-974688632472337999999888707880020---0552347888874799999970578743


Q ss_pred             -CCC---HHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEE
Q ss_conf             -680---7899999987542165045300220145741888788
Q gi|254780741|r  209 -YPV---KDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTV  248 (367)
Q Consensus       209 -~~~---~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V  248 (367)
                       .++   ..+.+.++++.++|.  =++|+ ..--.|+-++|.+|
T Consensus       254 gld~~~L~~i~~YFr~VRkKY~--~fle~-~~~~~D~RiLv~Qv  294 (616)
T TIGR01108       254 GLDIELLLEIADYFRKVRKKYS--QFLES-QLKGPDSRILVSQV  294 (616)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHCCC-CCCCCCCEEEEEEC
T ss_conf             1027999999999999999998--86076-77788844899736


No 110
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS.  Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=31.02  E-value=35  Score=14.17  Aligned_cols=19  Identities=16%  Similarity=-0.046  Sum_probs=11.1

Q ss_pred             HHCCCCCE--EEEECCCCCCC
Q ss_conf             65088750--87533776664
Q gi|254780741|r  187 GHFITQIE--WISLGGGIHFT  205 (367)
Q Consensus       187 ~~~~~~l~--~idiGGG~~~~  205 (367)
                      .+.|..-+  +||-|=||+-+
T Consensus       160 ~~~Gi~~~~IiiDPG~GFgKt  180 (257)
T cd00739         160 ESAGVARNRIILDPGIGFGKT  180 (257)
T ss_pred             HHCCCCCCEEEEECCCCCCCC
T ss_conf             987998251997088787888


No 111
>pfam04537 Herpes_UL55 Herpesvirus UL55 protein. In infected cells, UL55 is associated with the nuclear matrix, and found adjacent to compartments containing the capsid protein ICP35. UL55 was not detected in assembled virions. It is thought that UL55 may play a role in virion assembly or maturation.
Probab=30.67  E-value=36  Score=14.13  Aligned_cols=32  Identities=22%  Similarity=0.493  Sum_probs=20.4

Q ss_pred             HCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHH
Q ss_conf             149606653056566-61478999999999898
Q gi|254780741|r  155 IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEF  186 (367)
Q Consensus       155 ~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~  186 (367)
                      ...|.||.||+++.+ .+.+-|..+.....++.
T Consensus       127 ~~~I~Gi~yHCHCk~PFS~eCW~gA~aA~~hi~  159 (171)
T pfam04537       127 EVTIEGLCYHCHCKTPFSLECWMGAFAAYEHIV  159 (171)
T ss_pred             CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             068877898631499988899988999999999


No 112
>PRK06836 aspartate aminotransferase; Provisional
Probab=29.97  E-value=37  Score=14.06  Aligned_cols=103  Identities=10%  Similarity=0.028  Sum_probs=45.5

Q ss_pred             CCCCCEEECCCCCH-HH--HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88010885377780-34--78861388689856720599999986123456-1489963577443101245578643574
Q gi|254780741|r   70 FGGETHAYNVAYKD-CE--IDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK-IGLRINPSVSYSKFILADPNRPFSRLGE  145 (367)
Q Consensus        70 ~~~~~i~~~~~~~~-~e--l~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~-I~lRinP~~~~~~~~~~~~~~~~skfG~  145 (367)
                      .+++.|+.+++-+. -.  +..+++-|+.+.+.+..= ......++..+.+ +.+...               . ..|..
T Consensus        95 ~~pe~Iiit~Ga~~al~~~~~~ll~pGD~Vlvp~P~y-~~y~~~~~~~g~~~v~v~~~---------------~-e~~~~  157 (396)
T PRK06836         95 LTADHIVMTCGAAGALNVVLKALLNPGDEVIIFAPYF-VEYKFYVDNHGGKLVVVPPD---------------T-EDFQP  157 (396)
T ss_pred             CCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCC-HHHHHHHHHCCCEEEEECCC---------------C-CCCCC
T ss_conf             9589889858879999999999669999899827865-06899999849979993167---------------6-56767


Q ss_pred             CHHHHHHHHHCCCEEE---EECCCCC-CCCHHHHHHHHHHHHHHHHHC
Q ss_conf             2788887431496066---5305656-661478999999999898650
Q gi|254780741|r  146 KCKDKIESEIKNVNGL---MFHNNCE-NKSFLCFSAMLKNIEKEFGHF  189 (367)
Q Consensus       146 ~~~~~~~~~~~~i~Gi---h~H~gs~-~~~~~~~~~~l~~~~~~~~~~  189 (367)
                      +.+++.++...+.+.+   .-|.=++ ..+.+.+++..+.+.+...++
T Consensus       158 d~~~l~~~i~~~tk~iilnsP~NPTG~v~s~e~l~~i~~l~~~~~~~~  205 (396)
T PRK06836        158 DLDALEAAITPKTKAVIINSPNNPTGVIYSEETLKALGALLEEKSKEY  205 (396)
T ss_pred             CHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999736756629998689898998679999999999999865752


No 113
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679   DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC).   This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=29.91  E-value=37  Score=14.05  Aligned_cols=12  Identities=42%  Similarity=0.565  Sum_probs=6.1

Q ss_pred             HCCEEEEECHHH
Q ss_conf             187489807999
Q gi|254780741|r   51 YMDGTTSSSLYE   62 (367)
Q Consensus        51 ~g~g~dv~S~~E   62 (367)
                      ..||+.++=.||
T Consensus       110 KiDG~s~~L~Ye  121 (706)
T TIGR00575       110 KIDGLSISLTYE  121 (706)
T ss_pred             CCCCEEEEEEEE
T ss_conf             427157889983


No 114
>pfam09871 DUF2098 Uncharacterized protein conserved in archaea (DUF2098). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.79  E-value=31  Score=14.53  Aligned_cols=33  Identities=33%  Similarity=0.326  Sum_probs=22.0

Q ss_pred             EHHHHCCCCCEEEEEEEEEEEC-CCCCCCCCCCC
Q ss_conf             0022014574188878878630-44333433335
Q gi|254780741|r  232 EPGEAIVTNTTTLNTTVLDISE-NIKNLVIVDSS  264 (367)
Q Consensus       232 EPGR~lv~~ag~lv~~V~~~K~-~~~~~v~vd~g  264 (367)
                      +-|.++--..--++.+|+++|+ ++..|+.+|..
T Consensus         4 ~vG~~VrY~~TgT~G~V~~ik~e~~~~wv~LDst   37 (91)
T pfam09871         4 KVGSYVRYINTGTVGTVKDIKEENGRTWVLLDST   37 (91)
T ss_pred             EECCEEEECCCCCEEEEEEEEECCCCEEEEEECC
T ss_conf             1165699767995688999897289769998268


No 115
>cd06568 GH20_SpHex_like A subgroup of  the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex).  SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.44  E-value=37  Score=14.00  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=22.6

Q ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE--EEEEH
Q ss_conf             7508753377666445568078999999875421650--45300
Q gi|254780741|r  192 QIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ--IYLEP  233 (367)
Q Consensus       192 ~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~--l~iEP  233 (367)
                      .-+++.|||-=...........|.+.+.++.++.+.+  .|=|-
T Consensus       154 p~~~iHiGgDE~~~~~~~~~~~F~~~~~~~v~~~gk~~i~W~E~  197 (329)
T cd06568         154 PGPYIHIGGDEAHSTPHDDYAYFVNRVRAIVAKYGKTPVGWQEI  197 (329)
T ss_pred             CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf             99869977525576778999999999999999869967733265


No 116
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=29.05  E-value=28  Score=14.82  Aligned_cols=19  Identities=11%  Similarity=0.043  Sum_probs=12.5

Q ss_pred             EEECCCHHHHHHHHHHHCC
Q ss_conf             9856720599999986123
Q gi|254780741|r   96 IIFNTVSQLNKFKDKAQKL  114 (367)
Q Consensus        96 i~iDs~~El~~i~~~a~~~  114 (367)
                      +.++|.+||..+.+.++..
T Consensus        35 ~~~~~~~~L~~~l~~~~~~   53 (298)
T PRK13905         35 FEPADIEDLAAFLKFLKEN   53 (298)
T ss_pred             EEECCHHHHHHHHHHHHHC
T ss_conf             9869999999999978876


No 117
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=28.67  E-value=39  Score=13.91  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6147899999999989865088750875337
Q gi|254780741|r  170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG  200 (367)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG  200 (367)
                      +.+..|...++...+.+.+...++..+.+||
T Consensus       201 Qef~aya~~l~~~~~rl~~~~~~l~~l~lGG  231 (471)
T PRK12273        201 QEFGAFAVALAEDIKRLEEAAELLREVNLGA  231 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             7899999999999999999999987536875


No 118
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=28.29  E-value=39  Score=13.87  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             CCCCCCCEEEECCCC---CCCCCCCEEEEECCCC
Q ss_conf             333666455213566---7788798999968870
Q gi|254780741|r  295 RSCLAGDIFGEFHFE---KPVKIGDRISFEDVAG  325 (367)
Q Consensus       295 ~~C~~~D~l~~~~~~---~~l~~GD~l~i~~~GA  325 (367)
                      |+..++|++.-....   ..++.||.++|..-+-
T Consensus        12 Pt~~~Gd~v~v~~~~~~~~~~~~GDivv~~~p~~   45 (85)
T cd06530          12 PTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGD   45 (85)
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf             6030898999996135657777786999967999


No 119
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.10  E-value=39  Score=13.85  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=22.1

Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCC--CCCCCCHHHHHH---HHHHHHHCCCEEEEEH
Q ss_conf             998986508875087533776664--455680789999---9987542165045300
Q gi|254780741|r  182 IEKEFGHFITQIEWISLGGGIHFT--DKDYPVKDFCQR---LKEFSEKYSVQIYLEP  233 (367)
Q Consensus       182 ~~~~~~~~~~~l~~idiGGG~~~~--~~~~~~~~~~~~---i~~~~~~~~~~l~iEP  233 (367)
                      +.++..+++-  ..+-++.|.+..  .++..++.+++.   +.+..++.+++|.+||
T Consensus        95 ~id~A~~Lga--~~v~v~~~~~~~~~~~~~~w~~~~e~l~~l~~~A~~~Gv~l~lE~  149 (276)
T PRK09856         95 AMDMAKEMNA--GYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP  149 (276)
T ss_pred             HHHHHHHHCC--CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             9999998499--849993687778889799999999999999999997399899951


No 120
>KOG1344 consensus
Probab=27.93  E-value=40  Score=13.83  Aligned_cols=29  Identities=24%  Similarity=0.379  Sum_probs=13.7

Q ss_pred             EEECCCCCCCCCC--C---CCHHHHHHHHHHHHH
Q ss_conf             7533776664455--6---807899999987542
Q gi|254780741|r  196 ISLGGGIHFTDKD--Y---PVKDFCQRLKEFSEK  224 (367)
Q Consensus       196 idiGGG~~~~~~~--~---~~~~~~~~i~~~~~~  224 (367)
                      ||+||||+.....  .   +..++.-+|....++
T Consensus       135 INvGGGFHHcss~rGGGFC~yADItl~I~~lFer  168 (324)
T KOG1344         135 INVGGGFHHCSSSRGGGFCAYADITLAIFFLFER  168 (324)
T ss_pred             EEECCCCCEECCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf             8406751010147898502314678999999865


No 121
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=27.67  E-value=40  Score=13.80  Aligned_cols=41  Identities=12%  Similarity=0.219  Sum_probs=28.9

Q ss_pred             HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             78861388---689856720599999986123456148996357
Q gi|254780741|r   86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV  126 (367)
Q Consensus        86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~  126 (367)
                      ++...+.|   .++.+++.....++.+..++.+.++||=+||+.
T Consensus        79 i~~~~~~gad~I~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T  122 (224)
T PTZ00170         79 VDSFAKAGASQFTFHIEATEDPKAVARKIRAAGMQVGVALKPKT  122 (224)
T ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             99998628967998500133999999999971476455607999


No 122
>pfam02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase.
Probab=27.61  E-value=40  Score=13.79  Aligned_cols=21  Identities=19%  Similarity=0.185  Sum_probs=11.6

Q ss_pred             EEEEEEC-CCCEEEEEECCHHH
Q ss_conf             7999967-99099997389899
Q gi|254780741|r  341 TIAVKNV-DGTIKAIREFSYND  361 (367)
Q Consensus       341 ~~v~~~~-~g~~~~~r~e~~~d  361 (367)
                      ++|-++. .|++++.|--...|
T Consensus       467 aeVeVD~~TG~v~v~~~~~v~D  488 (543)
T pfam02738       467 VEVEVDCLTGDVKVLRTDIVMD  488 (543)
T ss_pred             EEEEEECCCCCEEEEEEEEEEE
T ss_conf             9999988999789849999990


No 123
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase; InterPro: IPR005961    This entry represents the large, tetrameric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in metazoans. PAH irreversibly converts phenylalanine to tyrosine, and is known to be the rate-limiting step in phenylalanine catabolism in some systems. It is closely related to metazoan tyrosine 3-monooxygenase and tryptophan 5-monoxygenase, and more distantly to monomeric phenylalanine-4-hydroxylases of some Gram-negative bacteria. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity . However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.   A deficiency in PAH can lead to phenylketonuria (PKU), an autosomal recessive genetic disorder characterised by an inability to metabolise phenylalanine, resulting in elevated Phe levels in the bloodstream that can lead to mental retardation if left untreated .    More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=27.47  E-value=33  Score=14.35  Aligned_cols=10  Identities=30%  Similarity=0.345  Sum_probs=5.6

Q ss_pred             CEEEEEEECC
Q ss_conf             8699954105
Q gi|254780741|r   30 VKLLLALKCF   39 (367)
Q Consensus        30 ~~i~yA~KaN   39 (367)
                      ..+.|+.|-.
T Consensus        19 ~~l~Fslk~~   28 (445)
T TIGR01268        19 TSLIFSLKEE   28 (445)
T ss_pred             EEEEEECCHH
T ss_conf             7899841400


No 124
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.34  E-value=41  Score=13.76  Aligned_cols=41  Identities=10%  Similarity=0.107  Sum_probs=30.1

Q ss_pred             HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             78861388---689856720599999986123456148996357
Q gi|254780741|r   86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV  126 (367)
Q Consensus        86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~  126 (367)
                      ++...+.|   .++.+++..++.++....++.+.++||=+||+.
T Consensus        78 i~~~~~aGad~i~~H~Ea~~~~~~~i~~ik~~g~k~GlalnP~T  121 (223)
T PRK08745         78 VPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPAT  121 (223)
T ss_pred             HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99999739978999606442999999999983984467746999


No 125
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=27.29  E-value=41  Score=13.76  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=24.4

Q ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf             689856720599999986123456148996357
Q gi|254780741|r   94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV  126 (367)
Q Consensus        94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~  126 (367)
                      .++.+++...+.++.+..++.+.++||=+||+.
T Consensus        88 I~~H~Ea~~~~~~~i~~ik~~g~k~Glalnp~T  120 (220)
T PRK05581         88 ITFHVEASEHIHRLLQLIKEAGIKAGLVLNPAT  120 (220)
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             998167502799999999974997046766999


No 126
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.23  E-value=27  Score=14.93  Aligned_cols=22  Identities=14%  Similarity=-0.031  Sum_probs=9.7

Q ss_pred             HHHHHHHHCCCCCEEEEECCCC
Q ss_conf             9998986508875087533776
Q gi|254780741|r  181 NIEKEFGHFITQIEWISLGGGI  202 (367)
Q Consensus       181 ~~~~~~~~~~~~l~~idiGGG~  202 (367)
                      .+.+.+..-++.+--=|+||-+
T Consensus       129 Fv~~yL~~EgI~ivA~DLGG~~  150 (237)
T PRK13489        129 FVRRYLALERIRITAEDLQGVH  150 (237)
T ss_pred             HHHHHHHHCCCCEEECCCCCCC
T ss_conf             9999999769927863038997


No 127
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=27.15  E-value=41  Score=13.74  Aligned_cols=19  Identities=11%  Similarity=0.079  Sum_probs=7.8

Q ss_pred             CCCCCCHHHHHHHHHHHHH
Q ss_conf             6566614789999999998
Q gi|254780741|r  166 NCENKSFLCFSAMLKNIEK  184 (367)
Q Consensus       166 gs~~~~~~~~~~~l~~~~~  184 (367)
                      |--.+..+.|.+.++.+.+
T Consensus       175 GlPgQt~~~~~~~l~~~~~  193 (399)
T PRK07379        175 GLPHQTLEDWQASLEAAIA  193 (399)
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             7899889999999999973


No 128
>pfam03328 HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family. This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Probab=26.97  E-value=41  Score=13.72  Aligned_cols=28  Identities=4%  Similarity=-0.020  Sum_probs=14.2

Q ss_pred             EEECCCCCHHHHHHHHCCC-CEEEECCCH
Q ss_conf             8853777803478861388-689856720
Q gi|254780741|r   75 HAYNVAYKDCEIDAVLSNC-DTIIFNTVS  102 (367)
Q Consensus        75 i~~~~~~~~~el~~a~~~~-~~i~iDs~~  102 (367)
                      ..|-|+.+++-++.+...+ ..+++|=++
T Consensus         3 ~LfvP~~~p~~~~ka~~~gaD~viiDLEd   31 (221)
T pfam03328         3 GLFLPGANPAMAEKAAIAGADWVVIDLEH   31 (221)
T ss_pred             EEECCCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf             77623899999999854898999998767


No 129
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=26.93  E-value=41  Score=13.71  Aligned_cols=37  Identities=24%  Similarity=0.114  Sum_probs=24.4

Q ss_pred             EEEEECCCCCCCCEE-----EEC-CCCCCCCCCCEEEEECCCC
Q ss_conf             599862333666455-----213-5667788798999968870
Q gi|254780741|r  289 TAMVCGRSCLAGDIF-----GEF-HFEKPVKIGDRISFEDVAG  325 (367)
Q Consensus       289 ~~~v~G~~C~~~D~l-----~~~-~~~~~l~~GD~l~i~~~GA  325 (367)
                      +.+|.-++|.+.+.+     .++ ..+|.+++||++.++++--
T Consensus        40 tl~I~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDiIll~~~~v   82 (138)
T cd04497          40 TLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDIILLRRVKI   82 (138)
T ss_pred             EEEEECCCCCCCCCEEEEEECCCHHHCCCCCCCCEEEEEEEEE
T ss_conf             9999928999999679999899865698999998999988899


No 130
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin.  Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.74  E-value=42  Score=13.69  Aligned_cols=107  Identities=10%  Similarity=-0.001  Sum_probs=47.3

Q ss_pred             CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEECCC
Q ss_conf             98885689779999999999999853369869995410599999999985187489807999989873688010885377
Q gi|254780741|r    1 MIKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYNVA   80 (367)
Q Consensus         1 ~i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~~~   80 (367)
                      ||.|-=+-++.+.|++-+..+... +..-++.+..             -..|.-+++-+.-||-... .+.+..+.-.|.
T Consensus         7 mlD~aR~f~~~~~ik~~id~ma~~-KlN~lH~Hlt-------------Ddq~wr~ei~~~P~Lt~~g-a~~~~~~~~~~~   71 (357)
T cd06563           7 MLDVSRHFFPVDEVKRFIDLMALY-KLNVFHWHLT-------------DDQGWRIEIKKYPKLTEVG-AWRGPTEIGLPQ   71 (357)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEE-------------CCCCCEEEECCCCHHHHHC-CCCCCCCCCCCC
T ss_conf             664368775899999999999981-8947889775-------------4888612107862266643-516766566665


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             78034788613886898567205999999861234561489963577443101
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFIL  133 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~  133 (367)
                      ....    ....+...   |.+|+..|.+.|+.    -+|||-|.+..++|..
T Consensus        72 ~~~~----~~~~~g~Y---T~~di~eiv~yA~~----rgI~VIPEID~PGH~~  113 (357)
T cd06563          72 GGGD----GTPYGGFY---TQEEIREIVAYAAE----RGITVIPEIDMPGHAL  113 (357)
T ss_pred             CCCC----CCCCCCCC---CHHHHHHHHHHHHH----CCCEEEECCCCCHHHH
T ss_conf             5678----87778874---99999999999997----6998976257611678


No 131
>pfam02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain. Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=26.55  E-value=42  Score=13.67  Aligned_cols=12  Identities=25%  Similarity=0.266  Sum_probs=4.7

Q ss_pred             HHHCCCEEEEEH
Q ss_conf             542165045300
Q gi|254780741|r  222 SEKYSVQIYLEP  233 (367)
Q Consensus       222 ~~~~~~~l~iEP  233 (367)
                      .++++++|-.||
T Consensus        88 ~~~~gI~Le~Ev   99 (103)
T pfam02873        88 FEKFGIWLEPEV   99 (103)
T ss_pred             HHHHCCCCEEEE
T ss_conf             998898125601


No 132
>PRK13515 carboxylate-amine ligase; Provisional
Probab=26.54  E-value=42  Score=13.67  Aligned_cols=136  Identities=17%  Similarity=0.222  Sum_probs=55.9

Q ss_pred             HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC----HHHHHHHH-----HCCCEEEEECCCCCCCCHHH
Q ss_conf             9999998612345614899635774431012455786435742----78888743-----14960665305656661478
Q gi|254780741|r  104 LNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK----CKDKIESE-----IKNVNGLMFHNNCENKSFLC  174 (367)
Q Consensus       104 l~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~----~~~~~~~~-----~~~i~Gih~H~gs~~~~~~~  174 (367)
                      |..+.......-.+.++|+-+   .++|+...    +...-++    +.++.+..     ..-+.|.|+|+|...  .+.
T Consensus        70 L~~~r~~l~~aA~~~g~~l~a---~GthP~~~----w~~~~~t~~~RY~~l~~~~~~~a~~~~i~G~HVHVgv~d--~e~  140 (381)
T PRK13515         70 LGRLRQRLAELAAQFGLRIIA---AGTHPFAD----WRRQRPTPKERYAQLFEDLGGVARRSLICGMHVHVGVPD--SED  140 (381)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE---ECCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCC--HHH
T ss_conf             999999999999986988983---07898888----766878960789999999999998643242389836898--899


Q ss_pred             HHHHHHHHHHHHHHC----CCCCEEEEECC--CC-----------CCC---CCCCCCHHHHHHHHHHHHHC---CC-EEE
Q ss_conf             999999999898650----88750875337--76-----------664---45568078999999875421---65-045
Q gi|254780741|r  175 FSAMLKNIEKEFGHF----ITQIEWISLGG--GI-----------HFT---DKDYPVKDFCQRLKEFSEKY---SV-QIY  230 (367)
Q Consensus       175 ~~~~l~~~~~~~~~~----~~~l~~idiGG--G~-----------~~~---~~~~~~~~~~~~i~~~~~~~---~~-~l~  230 (367)
                      -..++..+...+..+    ..+. |.+ |-  ||           |-.   ..-.+.++|.+.+..+.+.-   +. .+|
T Consensus       141 av~v~n~lr~~LP~LLALSAsSP-Fw~-G~DTG~aS~R~~~~~~~P~aG~P~~f~s~~~y~~~v~~l~~tG~i~d~~~i~  218 (381)
T PRK13515        141 RMALMNQVLYFLPHLLALSTSSP-FWG-GRDTGLKSYRRAIFGELPRTGLPPLFPSWAEYQRYVALLVRTGCIDDDGKIW  218 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             99999999988899999970893-104-7877644168768864888899977689999999999998659968788058


Q ss_pred             --EEHHHHCCCCCEEEEEEEEEEECC
Q ss_conf             --300220145741888788786304
Q gi|254780741|r  231 --LEPGEAIVTNTTTLNTTVLDISEN  254 (367)
Q Consensus       231 --iEPGR~lv~~ag~lv~~V~~~K~~  254 (367)
                        +=|    ....+++-.||-|+--+
T Consensus       219 WdvRP----s~~~pTlEvRv~D~~~~  240 (381)
T PRK13515        219 WDLRP----SPRFPTLELRICDVCPR  240 (381)
T ss_pred             EEECC----CCCCCCEEEECCCCCCC
T ss_conf             98257----89999625750688799


No 133
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=26.23  E-value=43  Score=13.63  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=23.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             6147899999999989865088750875337
Q gi|254780741|r  170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG  200 (367)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG  200 (367)
                      +.+..|...++.-.+.+.+...++..+++||
T Consensus       199 qef~~~a~~l~r~~~Rl~~~~~~l~~l~lGG  229 (473)
T PRK13353        199 QEFKAYSRVLERDMKRIQQSREHLYEVNLGA  229 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999999999988744787


No 134
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=26.22  E-value=43  Score=13.63  Aligned_cols=91  Identities=13%  Similarity=0.194  Sum_probs=47.1

Q ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHH
Q ss_conf             68985672059999998612345614899635774431012455786435742788887431496066530565666147
Q gi|254780741|r   94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFL  173 (367)
Q Consensus        94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~  173 (367)
                      .++.+++...+.++.+..+..+.++||=+||+..            .+.    .+...+. ...+.-.....|.+-+.+.
T Consensus        84 i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~------------~~~----l~~~l~~-iD~VLvMtV~PGf~GQ~f~  146 (201)
T pfam00834        84 ISFHAEASDHPHRTIQLIKEAGAKAGLVLNPATP------------LDA----IEYLLDD-LDLVLLMSVNPGFGGQSFI  146 (201)
T ss_pred             EEECHHHHHCHHHHHHHHHHCCCEEEEEECCCCC------------CHH----HHHHHHH-CCEEEEEEECCCCCCCCCC
T ss_conf             9975444137999999998649726888569986------------028----8876742-7989998866898876456


Q ss_pred             -HHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             -89999999998986508875087533776
Q gi|254780741|r  174 -CFSAMLKNIEKEFGHFITQIEWISLGGGI  202 (367)
Q Consensus       174 -~~~~~l~~~~~~~~~~~~~l~~idiGGG~  202 (367)
                       ..-..++.+.+++.+.+.++ .|-+=||.
T Consensus       147 ~~~l~KI~~lr~~~~~~~~~~-~I~vDGGI  175 (201)
T pfam00834       147 PSVLPKIRKVRKMIDEGGLDT-LIEVDGGV  175 (201)
T ss_pred             HHHHHHHHHHHHHHHHCCCCE-EEEEECCC
T ss_conf             779999999999998269980-79998988


No 135
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=25.84  E-value=10  Score=17.74  Aligned_cols=28  Identities=14%  Similarity=0.084  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHCCCEEEEEHHHHCCCCCE
Q ss_conf             9999987542165045300220145741
Q gi|254780741|r  215 CQRLKEFSEKYSVQIYLEPGEAIVTNTT  242 (367)
Q Consensus       215 ~~~i~~~~~~~~~~l~iEPGR~lv~~ag  242 (367)
                      .-...++.-+..++++||.|-+=-|++-
T Consensus        21 l~~~qeii~~~kPd~IIE~G~a~GGS~l   48 (202)
T pfam04989        21 MVAYQELIWELKPDLIIETGIAHGGSAL   48 (202)
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf             9999999998599989996167662899


No 136
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.57  E-value=43  Score=13.58  Aligned_cols=20  Identities=10%  Similarity=-0.024  Sum_probs=12.5

Q ss_pred             EEECCCHHHHHHHHHHHCCC
Q ss_conf             98567205999999861234
Q gi|254780741|r   96 IIFNTVSQLNKFKDKAQKLH  115 (367)
Q Consensus        96 i~iDs~~El~~i~~~a~~~~  115 (367)
                      +...+.+||..+.+.+++.+
T Consensus        41 ~~p~~~~~l~~~~~~~~~~~   60 (307)
T PRK13906         41 ITPTKNEEVQAVVKYAYQNE   60 (307)
T ss_pred             EEECCHHHHHHHHHHHHHCC
T ss_conf             96499999999999898769


No 137
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=25.21  E-value=35  Score=14.17  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHH----------HHCCC-CCEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEEHHHH
Q ss_conf             999999999898----------65088-750875337766644556--807899999987542165045300220
Q gi|254780741|r  175 FSAMLKNIEKEF----------GHFIT-QIEWISLGGGIHFTDKDY--PVKDFCQRLKEFSEKYSVQIYLEPGEA  236 (367)
Q Consensus       175 ~~~~l~~~~~~~----------~~~~~-~l~~idiGGG~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~iEPGR~  236 (367)
                      |+..++.+.+.-          ++-.+ +.+.|=||||+|--..+.  ..+.+.+.|+++.+. +..+.-|+|=+
T Consensus       260 Y~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~-G~piyaECGGl  333 (451)
T COG1797         260 YPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAA-GKPIYAECGGL  333 (451)
T ss_pred             CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf             299999999779779985786777799778889968977488999984479999999999876-99458851551


No 138
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=25.06  E-value=45  Score=13.49  Aligned_cols=52  Identities=17%  Similarity=0.105  Sum_probs=27.4

Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCCC
Q ss_conf             898650887508753377666445568078999999875421----6-5045300220145
Q gi|254780741|r  184 KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIVT  239 (367)
Q Consensus       184 ~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv~  239 (367)
                      +.+.+.+.+-=-+|+==|+    |....+++.+.+..+.+--    . ..|.+|||..+..
T Consensus       150 ~~~r~~gf~~iniDLiyGl----P~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~  206 (378)
T PRK05660        150 KLAQGAGLRSFNLDLMHGL----PDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGS  206 (378)
T ss_pred             HHHHHCCCCEEEECCCCCC----CCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHH
T ss_conf             9999769960654232689----99889999999999864498805788888658973764


No 139
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.70  E-value=45  Score=13.45  Aligned_cols=32  Identities=13%  Similarity=0.120  Sum_probs=19.3

Q ss_pred             CCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCC
Q ss_conf             5568078999999875421----6-504530022014
Q gi|254780741|r  207 KDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIV  238 (367)
Q Consensus       207 ~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv  238 (367)
                      ++...+++.+.+.++.+--    . ..+.+|||..+.
T Consensus       182 P~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~  218 (393)
T PRK08898        182 PNQTLDECRADVETALAFGPPHLSLYHLTLEPNTLFA  218 (393)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHH
T ss_conf             8898999999999986249995898777764897332


No 140
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.64  E-value=46  Score=13.44  Aligned_cols=85  Identities=13%  Similarity=-0.000  Sum_probs=40.6

Q ss_pred             CCEEEEEEECCC-CHHHHHHHHHH---CCEEEEECHHHH-H---HHHCCCCCCCEEECCCCCHHHHHHHHCCC--CEEEE
Q ss_conf             986999541059-99999999851---874898079999-8---98736880108853777803478861388--68985
Q gi|254780741|r   29 GVKLLLALKCFA-AWGMFDTLNQY---MDGTTSSSLYEV-M---LGHEKFGGETHAYNVAYKDCEIDAVLSNC--DTIIF   98 (367)
Q Consensus        29 ~~~i~yA~KaN~-~~~il~~l~~~---g~g~dv~S~~E~-~---la~~g~~~~~i~~~~~~~~~el~~a~~~~--~~i~i   98 (367)
                      +.++.=|+=.+- ...+++++++.   +..+...|.... +   .+++-.|.-.|+++|+...-.-+++++..  .-+++
T Consensus        46 ~~~~iDa~~~~~~~~~~~~~~~~~d~v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~T~~pee~L~~~~~iD~Vv  125 (472)
T TIGR03471        46 GSRLVDAPPHGVTIDDTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVC  125 (472)
T ss_pred             CCCEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEEE
T ss_conf             78375277668998999998506998999925865688999999999768898899978764368999984389726999


Q ss_pred             CCCHHHHHHHHHHHCC
Q ss_conf             6720599999986123
Q gi|254780741|r   99 NTVSQLNKFKDKAQKL  114 (367)
Q Consensus        99 Ds~~El~~i~~~a~~~  114 (367)
                      -.+-|.. +.+++++.
T Consensus       126 rGEgE~t-l~el~~g~  140 (472)
T TIGR03471       126 RREFDYT-IKEVAEGK  140 (472)
T ss_pred             ECCHHHH-HHHHHCCC
T ss_conf             2646999-99997499


No 141
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase; InterPro: IPR001160   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This majority of this group of proteins are aminoacyl-histidine dipeptidases (3.4.13.3 from EC, Xaa-His dipeptidases), which are zinc-containing metallopeptidases that belong to MEROPS peptidase family M20 (clan MH), subfamily M20C . Proteins of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His , . The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide..    The X-His dipeptidases cleave Xaa-His dipeptides (where Xaa is any hydrophobic residue). The amino acid sequence deduced from Escherichia coli reveals that peptidase D is a slightly hydrophilic protein of 485 residues that contains no extended domains of marked hydrophobicity .   Also contained within this family of proteins are acetylornithine deactylases which belong to MEROPS peptidase family M20, subfamily M20A non-peptidase homologues. ; GO: 0008769 X-His dipeptidase activity, 0006508 proteolysis.
Probab=24.43  E-value=26  Score=15.10  Aligned_cols=23  Identities=13%  Similarity=-0.015  Sum_probs=15.7

Q ss_pred             HHCCCCEEEECCCHHHHHHHHHH
Q ss_conf             61388689856720599999986
Q gi|254780741|r   89 VLSNCDTIIFNTVSQLNKFKDKA  111 (367)
Q Consensus        89 a~~~~~~i~iDs~~El~~i~~~a  111 (367)
                      ..++...||+||++|=..+.--|
T Consensus       157 ~~~G~~LiNiDsEeeG~~~vGCA  179 (506)
T TIGR01893       157 LLEGKILINIDSEEEGELLVGCA  179 (506)
T ss_pred             CCCCCEEEECCCEEEEEEEEEEC
T ss_conf             00165012137533348999722


No 142
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=23.84  E-value=47  Score=13.34  Aligned_cols=42  Identities=12%  Similarity=0.127  Sum_probs=34.9

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEECCC
Q ss_conf             665305656661478999999999898-650887508753377
Q gi|254780741|r  160 GLMFHNNCENKSFLCFSAMLKNIEKEF-GHFITQIEWISLGGG  201 (367)
Q Consensus       160 Gih~H~gs~~~~~~~~~~~l~~~~~~~-~~~~~~l~~idiGGG  201 (367)
                      -|-.|.|++=....-|+.||-.|..+. ++-|...+.||+--|
T Consensus       135 ~ltI~~GAGGTEa~DWa~ML~RMY~RWAE~rgykvE~lD~~~g  177 (373)
T TIGR00020       135 ILTIQSGAGGTEAQDWASMLYRMYLRWAERRGYKVEILDYSEG  177 (373)
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             3352387798516669999987535764105751356312678


No 143
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences.  In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=23.79  E-value=35  Score=14.23  Aligned_cols=20  Identities=15%  Similarity=0.006  Sum_probs=11.6

Q ss_pred             HHHHHHHHHCCCEEEEECCC
Q ss_conf             78888743149606653056
Q gi|254780741|r  147 CKDKIESEIKNVNGLMFHNN  166 (367)
Q Consensus       147 ~~~~~~~~~~~i~Gih~H~g  166 (367)
                      ..++.+....++..-||-+.
T Consensus       114 i~elf~~~gIgv~a~nflV~  133 (247)
T cd03275         114 YNEELEKINILVKARNFLVF  133 (247)
T ss_pred             HHHHHHHCCCCCCCCCEEEE
T ss_conf             99998765999778723896


No 144
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=23.70  E-value=24  Score=15.28  Aligned_cols=48  Identities=13%  Similarity=0.099  Sum_probs=24.6

Q ss_pred             HCCCCCEEEEECCCCCCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEHHHHC
Q ss_conf             50887508753377666445568--078999999875421650453002201
Q gi|254780741|r  188 HFITQIEWISLGGGIHFTDKDYP--VKDFCQRLKEFSEKYSVQIYLEPGEAI  237 (367)
Q Consensus       188 ~~~~~l~~idiGGG~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~iEPGR~l  237 (367)
                      +-.++++-|=||||||--+.+.-  -..+ +.+++...+ +..++-|+|=++
T Consensus       269 ~~LP~~dglylgGGyPEl~a~~Ls~n~~l-~si~~~a~~-G~PiyAECGGlM  318 (432)
T PRK13896        269 DPLPDCDGVYLPGGYPELHGEALADGPAL-DELGARAAD-GLPVLGECGGLM  318 (432)
T ss_pred             CCCCCCCEEEECCCCCHHHHHHHHCCHHH-HHHHHHHHC-CCCEEEECCCHH
T ss_conf             98998898984799803789998608789-999999986-997899873089


No 145
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.66  E-value=47  Score=13.32  Aligned_cols=91  Identities=12%  Similarity=0.218  Sum_probs=47.9

Q ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHH
Q ss_conf             68985672059999998612345614899635774431012455786435742788887431496066530565666147
Q gi|254780741|r   94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFL  173 (367)
Q Consensus        94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~  173 (367)
                      .++.+++..++.++.+..++.+.++||=+||+..            .+.    .+.... ....+.-.....|.+-+.+.
T Consensus        85 I~~H~Ea~~~~~~~i~~Ik~~g~k~GlalnP~T~------------~~~----l~~~l~-~~D~VLvMtV~PGf~GQ~f~  147 (220)
T PRK08883         85 ITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATP------------LAH----LEYIMD-KVDLILLMSVNPGFGGQSFI  147 (220)
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCC------------HHH----HHHHHH-HCCEEEEEEECCCCCCCCCC
T ss_conf             9985776549999999999859966888479998------------799----999997-46979998745898875455


Q ss_pred             -HHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             -89999999998986508875087533776
Q gi|254780741|r  174 -CFSAMLKNIEKEFGHFITQIEWISLGGGI  202 (367)
Q Consensus       174 -~~~~~l~~~~~~~~~~~~~l~~idiGGG~  202 (367)
                       .--..+..+.+.+.+.+.+++ |-+=||+
T Consensus       148 ~~~l~Ki~~l~~~~~~~~~~~~-I~VDGGI  176 (220)
T PRK08883        148 PHTLDKLRAVRKMIDASGRDIR-LEIDGGV  176 (220)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCE-EEEECCC
T ss_conf             7799999999998874499807-9998987


No 146
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF; InterPro: IPR001109   The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HUPF/HYPC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process . They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation , . .
Probab=23.60  E-value=46  Score=13.39  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=15.4

Q ss_pred             EEEECCCCCCCCEEEECCCCCCCCCCCEEEEEC
Q ss_conf             998623336664552135667788798999968
Q gi|254780741|r  290 AMVCGRSCLAGDIFGEFHFEKPVKIGDRISFED  322 (367)
Q Consensus       290 ~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~  322 (367)
                      -.+.|.+|+.         .+++++||||.+|-
T Consensus        32 l~Lv~ksC~~---------N~~~~~GdyvLvH~   55 (88)
T TIGR00074        32 LDLVGKSCDE---------NEEVKVGDYVLVHV   55 (88)
T ss_pred             EEECCCCCCC---------CCCCCCCCEEEEEE
T ss_conf             4123554467---------85999987763200


No 147
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=23.39  E-value=48  Score=13.29  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             CEEEECCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf             68985672059999998612345614899635
Q gi|254780741|r   94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPS  125 (367)
Q Consensus        94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~  125 (367)
                      .++.+++...+.++.+..+..+.++||=+||+
T Consensus        84 I~~H~E~~~~~~~~i~~ik~~g~~~Glal~p~  115 (211)
T cd00429          84 ITFHAEATDHLHRTIQLIKELGMKAGVALNPG  115 (211)
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99864322089999999997398723575489


No 148
>pfam08902 DUF1848 Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.
Probab=23.22  E-value=39  Score=13.85  Aligned_cols=23  Identities=17%  Similarity=0.488  Sum_probs=15.5

Q ss_pred             HHHHHHHHHCCCC-CCEEEEEECC
Q ss_conf             9999998612345-6148996357
Q gi|254780741|r  104 LNKFKDKAQKLHK-KIGLRINPSV  126 (367)
Q Consensus       104 l~~i~~~a~~~~~-~I~lRinP~~  126 (367)
                      ++.+.++++..|+ +|..|..|=+
T Consensus        99 i~~f~~Ls~~iG~~rViWRYDPIi  122 (264)
T pfam08902        99 IETFRRLSEKIGPERVIWRYDPII  122 (264)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCEE
T ss_conf             999999999879880898369777


No 149
>PRK10115 protease 2; Provisional
Probab=23.09  E-value=41  Score=13.73  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             CEEEEECCCCHHHHHCCCCCCCCCC--------EEEEEECCCCE---------EEEEECCHHHHHH
Q ss_conf             8999968870223243476899887--------79999679909---------9997389899987
Q gi|254780741|r  316 DRISFEDVAGYNINRKNWFNGINMP--------TIAVKNVDGTI---------KAIREFSYNDYYN  364 (367)
Q Consensus       316 D~l~i~~~GAY~~~~~~~Fn~~~~P--------~~v~~~~~g~~---------~~~r~e~~~d~~~  364 (367)
                      --+.+.-=|||++++.+.|..-.++        ++.-+++.|+.         ...|+-||+||++
T Consensus       445 ~P~lLyGYG~ygis~~p~Fs~~~l~ll~rG~v~AiahvRGGgE~G~~Wh~~G~~~~K~n~f~Dfia  510 (686)
T PRK10115        445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLD  510 (686)
T ss_pred             CCEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf             877999976466632786266575686589789999615788774478986656459647799999


No 150
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=22.96  E-value=49  Score=13.23  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCCCC
Q ss_conf             6147899999999989865088750875337---76664
Q gi|254780741|r  170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG---GIHFT  205 (367)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG---G~~~~  205 (367)
                      +.+.+|+.+++.=...+.+....+..+|+||   |-+++
T Consensus       200 qEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiN  238 (471)
T COG1027         200 QEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGIN  238 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf             467999999999999999999888850578501146768


No 151
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.92  E-value=49  Score=13.23  Aligned_cols=19  Identities=16%  Similarity=0.188  Sum_probs=10.1

Q ss_pred             CCCCEEEEEEEEEEECCCC
Q ss_conf             4574188878878630443
Q gi|254780741|r  238 VTNTTTLNTTVLDISENIK  256 (367)
Q Consensus       238 v~~ag~lv~~V~~~K~~~~  256 (367)
                      ....|.-+-||-|+|++.+
T Consensus       246 a~~~Ga~ilRVHDV~e~~~  264 (282)
T PRK11613        246 AAMQGAQIIRVHDVKETVE  264 (282)
T ss_pred             HHHCCCCEEEECCHHHHHH
T ss_conf             9987999999589899999


No 152
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=22.86  E-value=49  Score=13.22  Aligned_cols=21  Identities=10%  Similarity=0.175  Sum_probs=13.5

Q ss_pred             CCHHHHHHHHHHHHHCCCEEE
Q ss_conf             807899999987542165045
Q gi|254780741|r  210 PVKDFCQRLKEFSEKYSVQIY  230 (367)
Q Consensus       210 ~~~~~~~~i~~~~~~~~~~l~  230 (367)
                      .+.++..++.++.++++...+
T Consensus       145 ~~~dI~~ai~~~~~~~g~~~v  165 (228)
T cd01089         145 QNSDITEAIQKVIVDYGCTPV  165 (228)
T ss_pred             CHHHHHHHHHHHHHHCCCEEE
T ss_conf             968999999999998499677


No 153
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=22.73  E-value=49  Score=13.20  Aligned_cols=66  Identities=23%  Similarity=0.167  Sum_probs=33.7

Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCCCC-CC--C-HHHHHHHHHHHHHCCCEEEE-EHHHHCCCCCEEEEEE
Q ss_conf             99998986508875087533776664455-68--0-78999999875421650453-0022014574188878
Q gi|254780741|r  180 KNIEKEFGHFITQIEWISLGGGIHFTDKD-YP--V-KDFCQRLKEFSEKYSVQIYL-EPGEAIVTNTTTLNTT  247 (367)
Q Consensus       180 ~~~~~~~~~~~~~l~~idiGGG~~~~~~~-~~--~-~~~~~~i~~~~~~~~~~l~i-EPGR~lv~~ag~lv~~  247 (367)
                      ..+.++..+++.+ ...-+ ||+++..-- .+  + ..-...+.+..+++++..-- |||-.||+.+|.+|.=
T Consensus       106 ~~~Ld~a~e~g~~-~IyTL-GGy~vGkl~eep~VlGA~ts~eLi~~lke~gV~fr~~epgGgIVGasGLllg~  176 (258)
T COG2047         106 GKILDIAKEFGAR-MIYTL-GGYGVGKLVEEPRVLGAVTSKELIEELKEHGVEFRSGEPGGGIVGASGLLLGF  176 (258)
T ss_pred             HHHHHHHHHCCCC-EEEEE-CCCCCCCCCCCCEEEEEECCHHHHHHHHHCCEEECCCCCCCCEECHHHHHHHH
T ss_conf             9999999972974-79970-68556843577637774088999999997295713589987443024666445


No 154
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787    Serine and threonine dehydratases ,  are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown  that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue.    This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=22.47  E-value=38  Score=13.98  Aligned_cols=190  Identities=16%  Similarity=0.174  Sum_probs=89.1

Q ss_pred             CEEEEECHHH----HHHHHCCC-CCCCEEECCCCCHH-HHHHHHCCCCEEEE--CCCHHHHHHHH-HHHCCCCCCEEEEE
Q ss_conf             7489807999----98987368-80108853777803-47886138868985--67205999999-86123456148996
Q gi|254780741|r   53 DGTTSSSLYE----VMLGHEKF-GGETHAYNVAYKDC-EIDAVLSNCDTIIF--NTVSQLNKFKD-KAQKLHKKIGLRIN  123 (367)
Q Consensus        53 ~g~dv~S~~E----~~la~~g~-~~~~i~~~~~~~~~-el~~a~~~~~~i~i--Ds~~El~~i~~-~a~~~~~~I~lRin  123 (367)
                      .|+=++|.+=    +-++.+-. -+..|| -|.-+++ -..+....|+.+++  ||++|-..... ++++.    |+=--
T Consensus        68 ~GVIaASAGNHAQGVAlsa~~LG~~A~IV-MP~tTP~IKV~AVk~~GgeVvLhG~~y~~A~~~A~eL~q~~----GlTfi  142 (508)
T TIGR01124        68 RGVIAASAGNHAQGVALSAEKLGLKAVIV-MPETTPDIKVDAVKAFGGEVVLHGDNYDDAKDHAIELAQEK----GLTFI  142 (508)
T ss_pred             CCEEECCCCCHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHEECCCCEEEEECCCHHHHHHHHHHHHHHC----CCEEE
T ss_conf             82012024545789987663179726987-88888220012031269879973798579999999999736----88652


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCH------------------------HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf             357744310124557864357427------------------------88887431496066530565666147899999
Q gi|254780741|r  124 PSVSYSKFILADPNRPFSRLGEKC------------------------KDKIESEIKNVNGLMFHNNCENKSFLCFSAML  179 (367)
Q Consensus       124 P~~~~~~~~~~~~~~~~skfG~~~------------------------~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l  179 (367)
                      |-+.+   +..=.|+ . =.|+..                        .-+++.....|+=|.    -+..|..++++.|
T Consensus       143 ~PFDd---PlVIAGQ-G-T~alEil~Q~~~~~davFVpvGGGGLiAGVA~~~K~l~P~IkvIG----VEp~DS~am~~sL  213 (508)
T TIGR01124       143 HPFDD---PLVIAGQ-G-TVALEILRQVAEDLDAVFVPVGGGGLIAGVAALVKQLMPEIKVIG----VEPTDSDAMKQSL  213 (508)
T ss_pred             CCCCC---CCEECCC-H-HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE----ECCCHHHHHHHHH
T ss_conf             78888---6403251-0-666876505768476888711773689999999972289618997----4786599999998


Q ss_pred             HHHHHHHHHCCCCCEEEEE-CCCCCCC------------CCC----CCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCE
Q ss_conf             9999898650887508753-3776664------------455----6807899999987542165045300220145741
Q gi|254780741|r  180 KNIEKEFGHFITQIEWISL-GGGIHFT------------DKD----YPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTT  242 (367)
Q Consensus       180 ~~~~~~~~~~~~~l~~idi-GGG~~~~------------~~~----~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag  242 (367)
                      +.=..      .+|+.+=| -=|..+.            |=|    -|.|+.|.++|+..+  |+|=++||-=+|. =||
T Consensus       214 ~AG~~------V~L~~VGlFaDGVAVk~vG~~TF~LC~~YvDd~v~VdtD~vCaAiKD~F~--dtRav~EPaGALa-lAG  284 (508)
T TIGR01124       214 EAGER------VDLDQVGLFADGVAVKEVGDETFRLCQQYVDDIVRVDTDEVCAAIKDLFE--DTRAVLEPAGALA-LAG  284 (508)
T ss_pred             HCCCC------CCCCCCCEEECCEEEHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH--CHHHHCCHHHHHH-HHH
T ss_conf             56881------13771103426735400434458999974455486264455445553322--2122105026789-999


Q ss_pred             EEEEEEEEEEC---CCCCCCCCCCCCCCCC
Q ss_conf             88878878630---4433343333565656
Q gi|254780741|r  243 TLNTTVLDISE---NIKNLVIVDSSVEAHV  269 (367)
Q Consensus       243 ~lv~~V~~~K~---~~~~~v~vd~g~~~~~  269 (367)
                      .    =.++++   .+++.+.+..|.|.|.
T Consensus       285 L----K~Yva~~g~~~~~Lvai~sGAN~NF  310 (508)
T TIGR01124       285 L----KKYVAKHGIEGQTLVAITSGANMNF  310 (508)
T ss_pred             H----HHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf             9----9999954899864688713675453


No 155
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.34  E-value=38  Score=13.95  Aligned_cols=26  Identities=8%  Similarity=-0.266  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf             99999998986508875087533776
Q gi|254780741|r  177 AMLKNIEKEFGHFITQIEWISLGGGI  202 (367)
Q Consensus       177 ~~l~~~~~~~~~~~~~l~~idiGGG~  202 (367)
                      +=++.+.+.+++.++.+.-=|+||-.
T Consensus       127 rNiefa~~~L~~egI~IvaeDlGG~~  152 (201)
T PRK13487        127 RNAEFVRDYLQTERIPIIAEDLLDIY  152 (201)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99999999999869937986659997


No 156
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=21.86  E-value=51  Score=13.09  Aligned_cols=45  Identities=11%  Similarity=-0.025  Sum_probs=26.4

Q ss_pred             CCEEECCCCCHHHHHHHHCCCCEEEECCC--HH------HHHHHHHHHCCCCC
Q ss_conf             10885377780347886138868985672--05------99999986123456
Q gi|254780741|r   73 ETHAYNVAYKDCEIDAVLSNCDTIIFNTV--SQ------LNKFKDKAQKLHKK  117 (367)
Q Consensus        73 ~~i~~~~~~~~~el~~a~~~~~~i~iDs~--~E------l~~i~~~a~~~~~~  117 (367)
                      +.+..+|..+++++..+.+.|..-+|++-  .|      .+.+.+.++..+-+
T Consensus         7 ~~~~vs~Qi~~~di~~la~~GfktIInnRPd~E~~~qp~~~~~~~~a~~~Gl~   59 (110)
T pfam04273         7 EDLSVSPQIQPDDIAAAARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLA   59 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             88757599899999999985983885338887778998889999999983997


No 157
>pfam00728 Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold.
Probab=21.85  E-value=51  Score=13.09  Aligned_cols=23  Identities=9%  Similarity=0.234  Sum_probs=14.0

Q ss_pred             CCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf             98885689779999999999999
Q gi|254780741|r    1 MIKTPYYLIDKQKLLNNLDTALY   23 (367)
Q Consensus         1 ~i~TP~yv~d~~~i~~n~~~~~~   23 (367)
                      ||.|=-..++.+.|++-+..+..
T Consensus         7 mlD~aR~~~~~~~lk~~id~ma~   29 (335)
T pfam00728         7 MLDVARHFFSVDTIKRLIDAMAF   29 (335)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHH
T ss_conf             67657887899999999999998


No 158
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.77  E-value=32  Score=14.47  Aligned_cols=26  Identities=12%  Similarity=-0.095  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf             99999989865088750875337766
Q gi|254780741|r  178 MLKNIEKEFGHFITQIEWISLGGGIH  203 (367)
Q Consensus       178 ~l~~~~~~~~~~~~~l~~idiGGG~~  203 (367)
                      =++.+.+.+++-++.+--=|+||-.+
T Consensus       140 N~~Fa~~~L~~egI~vva~DlGG~~~  165 (214)
T PRK13493        140 NVEFVLHYAEQEGLEVVAYDLGGLEP  165 (214)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             99999999998699279720599977


No 159
>PRK08807 consensus
Probab=21.53  E-value=52  Score=13.05  Aligned_cols=33  Identities=18%  Similarity=0.157  Sum_probs=18.0

Q ss_pred             CCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCCC
Q ss_conf             5568078999999875421----6-5045300220145
Q gi|254780741|r  207 KDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIVT  239 (367)
Q Consensus       207 ~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv~  239 (367)
                      +....+++.+.++.+.+--    - ..|.+|||..+..
T Consensus       171 P~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~  208 (385)
T PRK08807        171 PEQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFA  208 (385)
T ss_pred             CCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHH
T ss_conf             99989999999999855599847898888517835754


No 160
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.48  E-value=52  Score=13.04  Aligned_cols=20  Identities=5%  Similarity=-0.057  Sum_probs=12.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHH
Q ss_conf             56566614789999999998
Q gi|254780741|r  165 NNCENKSFLCFSAMLKNIEK  184 (367)
Q Consensus       165 ~gs~~~~~~~~~~~l~~~~~  184 (367)
                      .|--.+..+.|.+-|+.+.+
T Consensus       217 yGlPgQT~e~~~~dl~~~~~  236 (447)
T PRK09058        217 FGLPGQTPEIWQQDLAIVRD  236 (447)
T ss_pred             CCCCCCCHHHHHHHHHHHHC
T ss_conf             27988999999999999964


No 161
>KOG2263 consensus
Probab=21.31  E-value=53  Score=13.02  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=45.8

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH-----CCCEE----EEE-EECCCCHHHHHHHH-HHCCEEEEECHHH-HHHHHCC
Q ss_conf             88856897799999999999998533-----69869----995-41059999999998-5187489807999-9898736
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN-----AGVKL----LLA-LKCFAAWGMFDTLN-QYMDGTTSSSLYE-VMLGHEK   69 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~-----~~~~i----~yA-~KaN~~~~il~~l~-~~g~g~dv~S~~E-~~la~~g   69 (367)
                      |.-|.+|+|.+.=.  .++++.+...     .+.++    +|+ +-+|. ...++-|. -.+.|+|.+-.-| +.++.++
T Consensus       206 iDEPilvmDL~~~~--l~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a-~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~  282 (765)
T KOG2263         206 IDEPILVMDLPGEK--LQAFKGAYAELESTLSGLNVLLATYFADVPAEA-YKTLKSLKGVTAFGFDLVRGPETLDLVKAG  282 (765)
T ss_pred             CCCCEEEEECCHHH--HHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHH-HHHHHCCCCEEEEEEEEEECHHHHHHHHHC
T ss_conf             27835886085789--999999999987532653246100322478778-998737864014423564165567799860


Q ss_pred             CCCCCEEECCCCCH
Q ss_conf             88010885377780
Q gi|254780741|r   70 FGGETHAYNVAYKD   83 (367)
Q Consensus        70 ~~~~~i~~~~~~~~   83 (367)
                      |+..++++-+...-
T Consensus       283 ~~~~k~l~~GvVdG  296 (765)
T KOG2263         283 FPEGKYLFAGVVDG  296 (765)
T ss_pred             CCCCCEEEEEEECC
T ss_conf             88884699987446


No 162
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=21.31  E-value=53  Score=13.02  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEECCCCHHHHHCCCCCCCCC--------CEEEEEECCCCE---------EEEEECCHHHHHH
Q ss_conf             78879899996887022324347689988--------779999679909---------9997389899987
Q gi|254780741|r  311 PVKIGDRISFEDVAGYNINRKNWFNGINM--------PTIAVKNVDGTI---------KAIREFSYNDYYN  364 (367)
Q Consensus       311 ~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~--------P~~v~~~~~g~~---------~~~r~e~~~d~~~  364 (367)
                      ++..---++..-=|||+.+|.+.|+...+        =+++-+++.|+.         .+.|+-||.||+.
T Consensus       443 ~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa  513 (682)
T COG1770         443 KLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIA  513 (682)
T ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf             67899857999953456557866441242200172699999950664347578873445533364788999


No 163
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=21.19  E-value=53  Score=13.00  Aligned_cols=100  Identities=13%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE-EE
Q ss_conf             78861388---689856720599999986123456148996357744310124557864357427888874314960-66
Q gi|254780741|r   86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVN-GL  161 (367)
Q Consensus        86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~-Gi  161 (367)
                      ++...+.|   .++++++-..+.++.+.-|+.|.+=|+=+||..+            -+   . .+.+++.  .++. --
T Consensus        74 ~~~Fa~aGA~~I~vH~Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TP------------l~---~-~~~~L~~--~D~VLlM  135 (216)
T TIGR01163        74 IEDFAEAGADIITVHAEATEHIHRLLQLIKELGAKAGIVLNPATP------------LE---A-LEYVLED--VDLVLLM  135 (216)
T ss_pred             HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCC------------HH---H-HHHHHHH--CCEEEEE
T ss_conf             889997089989984377626799999999718970688679999------------87---8-9989876--2989988


Q ss_pred             EECCC-CCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCC
Q ss_conf             53056-566614789999999998986508875-0875337766
Q gi|254780741|r  162 MFHNN-CENKSFLCFSAMLKNIEKEFGHFITQI-EWISLGGGIH  203 (367)
Q Consensus       162 h~H~g-s~~~~~~~~~~~l~~~~~~~~~~~~~l-~~idiGGG~~  203 (367)
                      ++--| |+++=.+..-+-++.+.+.+.++.... -.|.+=||.-
T Consensus       136 SVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDGGv~  179 (216)
T TIGR01163       136 SVNPGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDGGVN  179 (216)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             76079988411057899999999999860279955899717989


No 164
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632   Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families.    This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=20.96  E-value=54  Score=12.97  Aligned_cols=12  Identities=0%  Similarity=0.091  Sum_probs=5.0

Q ss_pred             CCCHHHHHHHHH
Q ss_conf             599999999985
Q gi|254780741|r   39 FAAWGMFDTLNQ   50 (367)
Q Consensus        39 N~~~~il~~l~~   50 (367)
                      |++|.|++.+++
T Consensus        49 hshP~vV~AV~~   60 (427)
T TIGR00700        49 HSHPKVVEAVKR   60 (427)
T ss_pred             CCCHHHHHHHHH
T ss_conf             987358999999


No 165
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.82  E-value=54  Score=12.95  Aligned_cols=50  Identities=16%  Similarity=0.073  Sum_probs=25.5

Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC-----CEEEEEHHHHC
Q ss_conf             8986508875087533776664455680789999998754216-----50453002201
Q gi|254780741|r  184 KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYS-----VQIYLEPGEAI  237 (367)
Q Consensus       184 ~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~-----~~l~iEPGR~l  237 (367)
                      +.+.+.+.+---+|+==|+|    ....+.+.+.+.++.+--.     ..|.+|||..+
T Consensus       190 ~~~r~~gf~niniDLIyGlP----gQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l  244 (436)
T PRK08208        190 ELIRAAHFPSLNIDLIYGIP----GQTHASFMESLHQALVYRPEELFLYPLYVRPLTGL  244 (436)
T ss_pred             HHHHHCCCCEEEEEEEECCC----CCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCC
T ss_conf             99998199857552443699----99999999999999827989898763304789830


No 166
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.80  E-value=54  Score=12.95  Aligned_cols=13  Identities=15%  Similarity=0.496  Sum_probs=7.0

Q ss_pred             HHHHCCCEEEEEH
Q ss_conf             7542165045300
Q gi|254780741|r  221 FSEKYSVQIYLEP  233 (367)
Q Consensus       221 ~~~~~~~~l~iEP  233 (367)
                      ..++++++|.+||
T Consensus       131 ~a~~~Gv~l~iEp  143 (254)
T TIGR03234       131 ALDRIGLTLLIEP  143 (254)
T ss_pred             HHHHCCCEEEEEE
T ss_conf             9996598898863


No 167
>TIGR01588 citE citrate lyase, beta subunit; InterPro: IPR006475   This group of sequences represent the beta subunit of the holoenzyme citrate lyase (4.1.3.6 from EC) composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The group contains an experimentally characterised member from Leuconostoc mesenteroides . The group contains sequences from a wide range of Gram-positive bacteria. For Gram-negative bacteria, it appears that only the sequences from gamma proteobacteria are present.; GO: 0008816 citryl-CoA lyase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=20.80  E-value=54  Score=12.95  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             CHHHHHHHHHHC------CEEEEECHHH---H----HHHHCC--C-CCCCEEE-CCCCCH---HHHHHHHCCCCEEE---
Q ss_conf             999999998518------7489807999---9----898736--8-8010885-377780---34788613886898---
Q gi|254780741|r   41 AWGMFDTLNQYM------DGTTSSSLYE---V----MLGHEK--F-GGETHAY-NVAYKD---CEIDAVLSNCDTII---   97 (367)
Q Consensus        41 ~~~il~~l~~~g------~g~dv~S~~E---~----~la~~g--~-~~~~i~~-~~~~~~---~el~~a~~~~~~i~---   97 (367)
                      +|++++.-.-+|      |==|+.|+.|   +    .-|++.  | +.+..|= ||--++   +||++.++-|.-++   
T Consensus        13 npAMi~da~iYGADSvMfDLEDAvS~~eKDsAR~LVy~AL~~~dY~~~EtVVRvN~LdtpFG~~Dl~AvVkAgvdvvRLP   92 (288)
T TIGR01588        13 NPAMIKDAFIYGADSVMFDLEDAVSLAEKDSARFLVYEALQTVDYGDTETVVRVNGLDTPFGLEDLKAVVKAGVDVVRLP   92 (288)
T ss_pred             CHHHHCCCCEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf             86444236022673000000125505433458889999853788775016887768998545888998875388656668


Q ss_pred             -ECCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             -5672059999998612345614899
Q gi|254780741|r   98 -FNTVSQLNKFKDKAQKLHKKIGLRI  122 (367)
Q Consensus        98 -iDs~~El~~i~~~a~~~~~~I~lRi  122 (367)
                       .||.+++..+..+..+.-+++|.-|
T Consensus        93 Ktdt~~~i~~le~~i~~iE~E~Gr~v  118 (288)
T TIGR01588        93 KTDTAEDIHELEKLIEEIEKEIGREV  118 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             98998899999989999998608885


No 168
>PRK09989 hypothetical protein; Provisional
Probab=20.12  E-value=56  Score=12.86  Aligned_cols=10  Identities=10%  Similarity=0.105  Sum_probs=3.7

Q ss_pred             CCEEEEECCC
Q ss_conf             9606653056
Q gi|254780741|r  157 NVNGLMFHNN  166 (367)
Q Consensus       157 ~i~Gih~H~g  166 (367)
                      +...+|++.|
T Consensus        98 gc~~vhv~aG  107 (258)
T PRK09989         98 NCEQVHVMAG  107 (258)
T ss_pred             CCCEEEECCC
T ss_conf             9986887789


Done!