Query gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 367
No_of_seqs 119 out of 2648
Neff 7.8
Searched_HMMs 39220
Date Sun May 29 19:21:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780741.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01048 lysA diaminopimelate 100.0 0 0 720.2 32.2 363 3-366 24-430 (431)
2 cd06829 PLPDE_III_CANSDC Type 100.0 0 0 620.3 34.2 342 4-346 1-346 (346)
3 PRK11165 diaminopimelate decar 100.0 0 0 609.5 34.9 355 3-366 17-410 (412)
4 COG0019 LysA Diaminopimelate d 100.0 0 0 603.7 33.1 344 2-345 25-394 (394)
5 cd06828 PLPDE_III_DapDC Type I 100.0 0 0 600.2 34.6 343 3-345 2-373 (373)
6 PRK08961 bifunctional aspartat 100.0 0 0 584.6 33.5 340 2-346 504-864 (865)
7 TIGR03099 dCO2ase_PEP1 pyridox 100.0 0 0 579.7 34.0 341 3-345 24-398 (398)
8 cd06843 PLPDE_III_PvsE_like Ty 100.0 0 0 576.6 34.4 342 3-345 1-377 (377)
9 cd06810 PLPDE_III_ODC_DapDC_li 100.0 0 0 574.5 34.8 340 4-345 1-368 (368)
10 cd06839 PLPDE_III_Btrk_like Ty 100.0 0 0 574.6 34.4 341 3-345 6-382 (382)
11 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 0 0 567.7 33.3 337 4-345 12-368 (368)
12 cd06836 PLPDE_III_ODC_DapDC_li 100.0 0 0 564.8 34.3 344 2-346 1-378 (379)
13 cd06841 PLPDE_III_MccE_like Ty 100.0 0 0 558.1 35.1 338 2-349 5-379 (379)
14 cd00622 PLPDE_III_ODC Type III 100.0 0 0 555.7 34.2 333 3-345 1-362 (362)
15 TIGR01047 nspC carboxynorsperm 100.0 0 0 550.5 22.3 365 2-366 1-403 (403)
16 cd06842 PLPDE_III_Y4yA_like Ty 100.0 0 0 526.1 33.1 331 3-345 9-423 (423)
17 cd06830 PLPDE_III_ADC Type III 100.0 0 0 522.0 33.6 342 3-345 4-409 (409)
18 cd06831 PLPDE_III_ODC_like_AZI 100.0 0 0 516.3 32.9 335 3-349 12-385 (394)
19 KOG0622 consensus 100.0 0 0 432.0 25.9 348 3-362 55-441 (448)
20 pfam02784 Orn_Arg_deC_N Pyrido 100.0 0 0 338.4 24.0 227 10-240 1-245 (245)
21 PRK05354 arginine decarboxylas 100.0 1.1E-35 2.7E-40 254.9 32.7 364 2-366 62-588 (634)
22 COG1166 SpeA Arginine decarbox 100.0 2.1E-31 5.3E-36 226.5 29.7 362 2-364 78-605 (652)
23 cd06808 PLPDE_III Type III Pyr 100.0 7.7E-33 2E-37 236.0 17.8 196 14-235 1-211 (211)
24 pfam00278 Orn_DAP_Arg_deC Pyri 99.9 1.2E-22 3.2E-27 168.7 7.9 103 243-345 1-110 (110)
25 cd06818 PLPDE_III_cryptic_DSD 99.7 2.5E-14 6.3E-19 114.1 26.9 318 2-351 1-376 (382)
26 cd06820 PLPDE_III_LS_D-TA_like 99.7 9.3E-14 2.4E-18 110.2 25.9 302 2-348 1-341 (353)
27 TIGR01273 speA arginine decarb 99.7 9.4E-15 2.4E-19 116.8 16.2 364 2-366 61-607 (657)
28 cd06812 PLPDE_III_DSD_D-TA_lik 99.7 4.6E-12 1.2E-16 99.1 28.7 314 2-353 4-366 (374)
29 cd06819 PLPDE_III_LS_D-TA Type 99.6 1E-12 2.5E-17 103.5 25.0 302 2-351 5-348 (358)
30 cd06821 PLPDE_III_D-TA Type II 99.6 7.1E-12 1.8E-16 97.9 24.6 300 2-348 7-345 (361)
31 cd06815 PLPDE_III_AR_like_1 Ty 99.5 3.5E-11 8.8E-16 93.3 24.4 312 4-336 1-349 (353)
32 PRK03646 dadX alanine racemase 99.5 1.9E-10 4.8E-15 88.4 27.9 294 5-324 3-325 (355)
33 cd00430 PLPDE_III_AR Type III 99.5 2.4E-10 6.1E-15 87.8 26.1 291 6-324 3-333 (367)
34 cd06827 PLPDE_III_AR_proteobac 99.5 3.2E-10 8.1E-15 87.0 26.6 288 8-324 5-324 (354)
35 cd06817 PLPDE_III_DSD Type III 99.5 6.8E-11 1.7E-15 91.4 23.0 318 2-351 4-379 (389)
36 PRK00053 alr alanine racemase; 99.5 3.2E-10 8.2E-15 86.9 24.8 295 5-324 3-330 (360)
37 cd06813 PLPDE_III_DSD_D-TA_lik 99.4 3.8E-10 9.7E-15 86.5 23.6 319 2-348 9-372 (388)
38 PRK13340 alanine racemase; Rev 99.4 3.5E-09 8.9E-14 80.1 24.0 290 8-323 43-368 (404)
39 PRK11930 putative bifunctional 99.3 1.8E-08 4.5E-13 75.5 26.6 272 8-323 466-791 (824)
40 cd06826 PLPDE_III_AR2 Type III 99.3 1.8E-08 4.7E-13 75.4 26.7 283 9-323 6-330 (365)
41 COG3616 Predicted amino acid a 99.2 4.5E-08 1.2E-12 72.8 24.1 315 1-357 15-364 (368)
42 cd06825 PLPDE_III_VanT Type II 99.2 7.7E-08 2E-12 71.2 24.8 289 9-324 6-334 (368)
43 COG0787 Alr Alanine racemase [ 99.2 6.5E-08 1.6E-12 71.8 23.9 292 4-323 3-328 (360)
44 cd07376 PLPDE_III_DSD_D-TA_lik 99.2 5.9E-08 1.5E-12 72.0 23.6 306 14-351 2-337 (345)
45 cd06811 PLPDE_III_yhfX_like Ty 99.2 1.9E-07 4.7E-12 68.7 24.9 289 2-320 26-348 (382)
46 cd06814 PLPDE_III_DSD_D-TA_lik 99.1 2.1E-07 5.2E-12 68.4 23.3 152 2-166 7-178 (379)
47 pfam01168 Ala_racemase_N Alani 99.1 5.1E-08 1.3E-12 72.4 18.5 176 9-200 1-189 (216)
48 COG3457 Predicted amino acid r 99.0 2.7E-08 6.8E-13 74.3 14.9 302 4-334 3-345 (353)
49 TIGR00492 alr alanine racemase 98.7 3.8E-05 9.8E-10 53.5 21.8 297 7-322 6-346 (383)
50 cd06824 PLPDE_III_Yggs_like Py 96.2 0.11 2.8E-06 30.7 14.8 174 12-199 7-199 (224)
51 cd00635 PLPDE_III_YBL036c_like 95.9 0.15 3.8E-06 29.9 17.4 174 12-199 6-198 (222)
52 cd06822 PLPDE_III_YBL036c_euk 88.7 1.9 4.7E-05 22.6 16.9 177 11-201 5-203 (227)
53 COG0325 Predicted enzyme with 84.5 3.1 7.9E-05 21.1 15.0 175 11-199 7-200 (228)
54 PRK08207 coproporphyrinogen II 84.3 2.9 7.3E-05 21.3 5.3 50 186-235 221-272 (497)
55 TIGR00873 gnd 6-phosphoglucona 84.0 3.2 8.3E-05 21.0 7.0 131 64-205 17-184 (480)
56 PRK04036 DNA polymerase II sma 83.9 1 2.6E-05 24.3 2.9 75 160-236 241-332 (497)
57 PRK05449 aspartate alpha-decar 83.1 3.5 9E-05 20.8 6.9 69 285-358 53-121 (126)
58 TIGR01270 Trp_5_monoox tryptop 81.4 1.6 4.2E-05 23.0 3.1 149 30-193 97-276 (499)
59 COG1311 HYS2 Archaeal DNA poly 80.9 1.8 4.7E-05 22.6 3.3 75 161-238 232-320 (481)
60 TIGR02050 gshA_cyan_rel unchar 74.2 2.7 6.9E-05 21.5 2.6 82 83-171 46-140 (297)
61 pfam01261 AP_endonuc_2 Xylose 73.5 6.8 0.00017 18.9 7.4 79 155-235 39-125 (201)
62 COG0635 HemN Coproporphyrinoge 71.0 7.7 0.0002 18.5 6.4 10 116-125 124-133 (416)
63 TIGR00629 uvde UV damage endon 70.6 7.9 0.0002 18.5 4.8 167 71-253 45-235 (345)
64 cd03347 eu_PheOH Eukaryotic ph 68.8 3.9 1E-04 20.5 2.4 11 99-109 104-114 (306)
65 cd03345 eu_TyrOH Eukaryotic ty 68.4 8.8 0.00022 18.2 4.2 12 98-109 102-113 (298)
66 PRK02308 uvsE putative UV dama 67.6 9.1 0.00023 18.1 5.5 132 94-233 41-188 (316)
67 pfam02261 Asp_decarbox Asparta 66.4 9.6 0.00024 17.9 5.6 62 285-351 53-114 (116)
68 PRK10461 thiamine biosynthesis 61.6 10 0.00026 17.7 3.4 115 170-308 181-306 (351)
69 PRK05799 coproporphyrinogen II 61.2 12 0.0003 17.3 5.7 124 90-238 56-197 (374)
70 pfam00842 Ala_racemase_C Alani 60.2 12 0.00032 17.2 6.8 35 288-324 60-95 (125)
71 pfam09561 RE_HpaII HpaII restr 56.2 5.4 0.00014 19.5 1.2 22 89-110 86-109 (355)
72 cd06919 Asp_decarbox Aspartate 55.5 15 0.00038 16.7 5.9 61 284-349 51-111 (111)
73 COG3220 Uncharacterized protei 52.0 17 0.00043 16.3 5.6 108 141-248 42-155 (282)
74 TIGR00379 cobB cobyrinic acid 51.6 6.5 0.00017 19.0 1.0 52 190-251 291-346 (464)
75 COG0853 PanD Aspartate 1-decar 49.2 19 0.00047 16.0 4.9 64 287-356 54-118 (126)
76 cd06562 GH20_HexA_HexB-like Be 48.5 19 0.00048 15.9 3.2 23 1-23 7-29 (348)
77 cd03130 GATase1_CobB Type 1 gl 47.2 9.2 0.00023 18.0 1.2 49 188-237 36-86 (198)
78 COG1477 ApbE Membrane-associat 46.9 20 0.00051 15.8 5.3 109 171-308 171-295 (337)
79 TIGR00223 panD aspartate 1-dec 46.8 11 0.00028 17.5 1.6 62 285-353 53-117 (127)
80 TIGR01379 thiL thiamine-monoph 45.0 21 0.00055 15.6 4.1 72 158-230 48-119 (336)
81 COG1606 ATP-utilizing enzymes 44.0 22 0.00057 15.5 3.2 16 138-153 143-158 (269)
82 PRK13347 coproporphyrinogen II 43.9 22 0.00057 15.5 5.5 20 166-185 212-231 (453)
83 PRK08599 coproporphyrinogen II 43.7 22 0.00057 15.5 5.8 34 92-125 58-96 (377)
84 TIGR01016 sucCoAbeta succinyl- 41.2 24 0.00062 15.2 4.7 53 190-242 281-365 (389)
85 TIGR01859 fruc_bis_ald_ fructo 41.2 24 0.00062 15.2 5.1 132 86-242 8-153 (339)
86 KOG0996 consensus 41.1 9.4 0.00024 18.0 0.5 27 83-109 704-732 (1293)
87 pfam05913 DUF871 Bacterial pro 40.1 25 0.00065 15.1 4.3 29 287-320 326-354 (357)
88 PRK08005 ribulose-phosphate 3- 39.5 26 0.00066 15.1 4.2 33 94-126 85-117 (210)
89 cd03008 TryX_like_RdCVF Trypar 39.2 26 0.00065 15.1 2.5 32 150-182 19-50 (146)
90 PRK05731 thiamine monophosphat 39.0 26 0.00067 15.0 5.4 72 158-230 48-119 (320)
91 TIGR01520 FruBisAldo_II_A fruc 38.6 27 0.00068 15.0 3.3 88 104-201 92-184 (365)
92 cd06564 GH20_DspB_LnbB-like Gl 37.0 28 0.00072 14.8 6.0 23 1-23 6-28 (326)
93 pfam05114 DUF692 Protein of un 36.4 29 0.00074 14.7 6.5 93 147-239 47-145 (275)
94 COG1792 MreC Cell shape-determ 35.6 30 0.00076 14.7 5.9 81 231-324 144-225 (284)
95 TIGR01759 MalateDH-SF1 malate 35.6 30 0.00076 14.6 3.7 50 311-365 260-313 (329)
96 cd03274 ABC_SMC4_euk Eukaryoti 35.4 17 0.00043 16.3 1.1 40 210-251 166-208 (212)
97 PRK05904 coproporphyrinogen II 35.4 30 0.00077 14.6 6.1 50 184-237 146-200 (353)
98 PRK09249 coproporphyrinogen II 34.2 31 0.0008 14.5 5.7 19 166-184 213-231 (456)
99 PRK13518 carboxylate-amine lig 34.0 32 0.00081 14.5 5.6 140 102-254 75-247 (357)
100 PRK05628 coproporphyrinogen II 33.5 32 0.00082 14.4 4.6 19 166-184 168-186 (376)
101 PRK08446 coproporphyrinogen II 33.3 32 0.00082 14.4 5.4 98 116-238 86-197 (351)
102 PRK13516 carboxylate-amine lig 32.9 33 0.00084 14.4 5.5 65 103-171 75-145 (372)
103 TIGR02716 C20_methyl_CrtF C-20 32.9 33 0.00084 14.4 4.7 16 188-203 146-161 (306)
104 PRK12425 fumarate hydratase; P 32.8 28 0.00072 14.8 1.8 31 170-200 197-227 (464)
105 TIGR02062 RNase_B exoribonucle 32.5 33 0.00085 14.3 3.2 66 239-304 581-647 (664)
106 PRK05409 hypothetical protein; 32.4 33 0.00085 14.3 6.2 153 148-305 51-220 (283)
107 cd06569 GH20_Sm-chitobiase-lik 31.9 34 0.00087 14.3 4.6 30 172-201 179-208 (445)
108 TIGR00292 TIGR00292 thiazole b 31.9 12 0.0003 17.3 -0.2 19 184-202 38-62 (283)
109 TIGR01108 oadA oxaloacetate de 31.3 35 0.00089 14.2 7.3 206 36-248 18-294 (616)
110 cd00739 DHPS DHPS subgroup of 31.0 35 0.0009 14.2 4.9 19 187-205 160-180 (257)
111 pfam04537 Herpes_UL55 Herpesvi 30.7 36 0.00091 14.1 2.8 32 155-186 127-159 (171)
112 PRK06836 aspartate aminotransf 30.0 37 0.00094 14.1 5.7 103 70-189 95-205 (396)
113 TIGR00575 dnlj DNA ligase, NAD 29.9 37 0.00094 14.1 2.2 12 51-62 110-121 (706)
114 pfam09871 DUF2098 Uncharacteri 29.8 31 0.00079 14.5 1.6 33 232-264 4-37 (91)
115 cd06568 GH20_SpHex_like A subg 29.4 37 0.00096 14.0 6.8 42 192-233 154-197 (329)
116 PRK13905 murB UDP-N-acetylenol 29.0 28 0.00072 14.8 1.3 19 96-114 35-53 (298)
117 PRK12273 aspA aspartate ammoni 28.7 39 0.00098 13.9 2.7 31 170-200 201-231 (471)
118 cd06530 S26_SPase_I The S26 Ty 28.3 39 0.001 13.9 3.0 31 295-325 12-45 (85)
119 PRK09856 fructoselysine 3-epim 28.1 39 0.001 13.8 5.3 50 182-233 95-149 (276)
120 KOG1344 consensus 27.9 40 0.001 13.8 2.6 29 196-224 135-168 (324)
121 PTZ00170 D-ribulose-5-phosphat 27.7 40 0.001 13.8 2.8 41 86-126 79-122 (224)
122 pfam02738 Ald_Xan_dh_C2 Molybd 27.6 40 0.001 13.8 3.9 21 341-361 467-488 (543)
123 TIGR01268 Phe4hydrox_tetr phen 27.5 33 0.00085 14.3 1.4 10 30-39 19-28 (445)
124 PRK08745 ribulose-phosphate 3- 27.3 41 0.001 13.8 3.0 41 86-126 78-121 (223)
125 PRK05581 ribulose-phosphate 3- 27.3 41 0.001 13.8 3.3 33 94-126 88-120 (220)
126 PRK13489 chemoreceptor glutami 27.2 27 0.00069 14.9 1.0 22 181-202 129-150 (237)
127 PRK07379 coproporphyrinogen II 27.2 41 0.001 13.7 4.9 19 166-184 175-193 (399)
128 pfam03328 HpcH_HpaI HpcH/HpaI 27.0 41 0.0011 13.7 5.2 28 75-102 3-31 (221)
129 cd04497 hPOT1_OB1_like hPOT1_O 26.9 41 0.0011 13.7 3.4 37 289-325 40-82 (138)
130 cd06563 GH20_chitobiase-like T 26.7 42 0.0011 13.7 4.2 107 1-133 7-113 (357)
131 pfam02873 MurB_C UDP-N-acetyle 26.5 42 0.0011 13.7 2.3 12 222-233 88-99 (103)
132 PRK13515 carboxylate-amine lig 26.5 42 0.0011 13.7 5.9 136 104-254 70-240 (381)
133 PRK13353 aspartate ammonia-lya 26.2 43 0.0011 13.6 2.1 31 170-200 199-229 (473)
134 pfam00834 Ribul_P_3_epim Ribul 26.2 43 0.0011 13.6 3.2 91 94-202 84-175 (201)
135 pfam04989 CmcI Cephalosporin h 25.8 10 0.00026 17.7 -1.4 28 215-242 21-48 (202)
136 PRK13906 murB UDP-N-acetylenol 25.6 43 0.0011 13.6 1.8 20 96-115 41-60 (307)
137 COG1797 CobB Cobyrinic acid a, 25.2 35 0.0009 14.2 1.2 61 175-236 260-333 (451)
138 PRK05660 coproporphyrinogen II 25.1 45 0.0011 13.5 5.5 52 184-239 150-206 (378)
139 PRK08898 coproporphyrinogen II 24.7 45 0.0012 13.4 4.7 32 207-238 182-218 (393)
140 TIGR03471 HpnJ hopanoid biosyn 24.6 46 0.0012 13.4 6.0 85 29-114 46-140 (472)
141 TIGR01893 aa-his-dipept aminoa 24.4 26 0.00065 15.1 0.4 23 89-111 157-179 (506)
142 TIGR00020 prfB peptide chain r 23.8 47 0.0012 13.3 3.7 42 160-201 135-177 (373)
143 cd03275 ABC_SMC1_euk Eukaryoti 23.8 35 0.00088 14.2 1.0 20 147-166 114-133 (247)
144 PRK13896 cobyrinic acid a,c-di 23.7 24 0.00061 15.3 0.1 48 188-237 269-318 (432)
145 PRK08883 ribulose-phosphate 3- 23.7 47 0.0012 13.3 3.0 91 94-202 85-176 (220)
146 TIGR00074 hypC_hupF hydrogenas 23.6 46 0.0012 13.4 1.6 24 290-322 32-55 (88)
147 cd00429 RPE Ribulose-5-phospha 23.4 48 0.0012 13.3 3.3 32 94-125 84-115 (211)
148 pfam08902 DUF1848 Domain of un 23.2 39 0.001 13.9 1.2 23 104-126 99-122 (264)
149 PRK10115 protease 2; Provision 23.1 41 0.001 13.7 1.3 49 316-364 445-510 (686)
150 COG1027 AspA Aspartate ammonia 23.0 49 0.0012 13.2 2.9 36 170-205 200-238 (471)
151 PRK11613 folP dihydropteroate 22.9 49 0.0012 13.2 4.8 19 238-256 246-264 (282)
152 cd01089 PA2G4-like Related to 22.9 49 0.0013 13.2 2.7 21 210-230 145-165 (228)
153 COG2047 Uncharacterized protei 22.7 49 0.0013 13.2 3.4 66 180-247 106-176 (258)
154 TIGR01124 ilvA_2Cterm threonin 22.5 38 0.00096 14.0 1.0 190 53-269 68-310 (508)
155 PRK13487 chemoreceptor glutami 22.3 38 0.00097 13.9 1.0 26 177-202 127-152 (201)
156 pfam04273 DUF442 Putative phos 21.9 51 0.0013 13.1 6.8 45 73-117 7-59 (110)
157 pfam00728 Glyco_hydro_20 Glyco 21.8 51 0.0013 13.1 3.7 23 1-23 7-29 (335)
158 PRK13493 chemoreceptor glutami 21.8 32 0.00081 14.5 0.5 26 178-203 140-165 (214)
159 PRK08807 consensus 21.5 52 0.0013 13.0 5.2 33 207-239 171-208 (385)
160 PRK09058 coproporphyrinogen II 21.5 52 0.0013 13.0 4.9 20 165-184 217-236 (447)
161 KOG2263 consensus 21.3 53 0.0013 13.0 3.6 79 2-83 206-296 (765)
162 COG1770 PtrB Protease II [Amin 21.3 53 0.0013 13.0 2.8 54 311-364 443-513 (682)
163 TIGR01163 rpe ribulose-phospha 21.2 53 0.0014 13.0 3.8 100 86-203 74-179 (216)
164 TIGR00700 GABAtrnsam 4-aminobu 21.0 54 0.0014 13.0 2.3 12 39-50 49-60 (427)
165 PRK08208 coproporphyrinogen II 20.8 54 0.0014 13.0 5.4 50 184-237 190-244 (436)
166 TIGR03234 OH-pyruv-isom hydrox 20.8 54 0.0014 13.0 7.3 13 221-233 131-143 (254)
167 TIGR01588 citE citrate lyase, 20.8 54 0.0014 12.9 2.5 82 41-122 13-118 (288)
168 PRK09989 hypothetical protein; 20.1 56 0.0014 12.9 6.4 10 157-166 98-107 (258)
No 1
>TIGR01048 lysA diaminopimelate decarboxylase; InterPro: IPR002986 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. These conserved motifs suggest a common structural arrangement for positioning of substrate and the cofactor pyridoxal 5'-phosphate among bacterial DAP decarboxylases, eukaryotic ornithine decarboxylases and arginine decarboxylases . The structure of bacterial diaminopimelate decarboxylase has been determined . ; GO: 0008836 diaminopimelate decarboxylase activity, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=100.00 E-value=0 Score=720.22 Aligned_cols=363 Identities=21% Similarity=0.271 Sum_probs=323.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCC----CCC
Q ss_conf 8856897799999999999998533---6986999541059999999998518748980799998987-3688----010
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKN---AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFG----GET 74 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~---~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~----~~~ 74 (367)
+||+||||++.||+|+++++++|.. ..+.|+||+|||+|++|++++.++|.||||+|.+|+..|+ +|++ +++
T Consensus 24 GTPLYVyd~~~l~~~~~~~~~AF~~~~~~~~~v~YA~KAn~Nl~~~~~la~~G~G~D~VS~GEL~~A~~AG~~~~~~~~~ 103 (431)
T TIGR01048 24 GTPLYVYDEATLRERFEAYKEAFGAAERESALVCYAVKANSNLALLRLLAELGSGFDVVSGGELYRALAAGFPLQEIPEK 103 (431)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCC
T ss_conf 89879816789999999999873015877531587431407688999999638846887016999999808885566643
Q ss_pred EEECC-CCCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH--
Q ss_conf 88537-778034788613886-8985672059999998612345--61489963577443101245578643574278--
Q gi|254780741|r 75 HAYNV-AYKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCK-- 148 (367)
Q Consensus 75 i~~~~-~~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-- 148 (367)
|+||+ +|+.+||+.|++.+. +||+||++||++|.++|++.|. +|.|||||++.+++|+.++||.+.||||++.+
T Consensus 104 i~F~Gn~Ks~~El~~Al~~~i~~~nVdS~~El~~l~~~A~e~G~~~~i~~RvNP~VdakTHpyI~TG~~~sKFG~~~~sG 183 (431)
T TIGR01048 104 IVFSGNGKSRAELERALELGIRCINVDSFSELELLNEIAPELGKKARISLRVNPDVDAKTHPYISTGLKDSKFGIDVESG 183 (431)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCC
T ss_conf 68965877889999999637989997688999999973521385589999726887598783122100036547774575
Q ss_pred HHHHH-------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCCCCC----CCHH
Q ss_conf 88874-------31496066530565666147899999999989865----088750875337766644556----8078
Q gi|254780741|r 149 DKIES-------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH----FITQIEWISLGGGIHFTDKDY----PVKD 213 (367)
Q Consensus 149 ~~~~~-------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~----~~~~l~~idiGGG~~~~~~~~----~~~~ 213 (367)
+..+. ...++.|||||+|||+.+.++|..+.+.+.+++++ ++.++++||+||||+++|.+. ++.+
T Consensus 184 ~a~~~~~~a~~~~~l~~vG~H~HIGSQi~d~~Pf~~A~~~v~~~~~~l~~~yG~~l~~ld~GGGLGi~Y~~e~~~p~~~~ 263 (431)
T TIGR01048 184 EALEAYLYALQLENLEIVGIHCHIGSQILDLSPFVEAAEKVVKLVEELKAEYGIDLEFLDLGGGLGIPYTPEEEPPDLSE 263 (431)
T ss_pred CCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCCCCCHHH
T ss_conf 31789999983789938998643373010234079999999999998888716007999838722240068888669899
Q ss_pred HHHHHHHHHHH-----C-CCEEEEEHHHHCCCCCEEEEEEEEEEECC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999987542-----1-65045300220145741888788786304-4-333433335656566400134553000247
Q gi|254780741|r 214 FCQRLKEFSEK-----Y-SVQIYLEPGEAIVTNTTTLNTTVLDISEN-I-KNLVIVDSSVEAHVPDYLLYQESATIYPNT 285 (367)
Q Consensus 214 ~~~~i~~~~~~-----~-~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~-~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~ 285 (367)
|++.+....++ . +++||+||||||||+||+|||||..+|++ . ++||+||||||.+|||++|..+|++...+.
T Consensus 264 yA~~~~~~l~~~~~~g~~~~~li~EPGRslVa~aG~Llt~V~~~K~~~~~r~Fv~VDaGMNDliRPalY~AyH~i~~~~~ 343 (431)
T TIGR01048 264 YAQAILAALEGYARLGLPDPKLILEPGRSLVANAGVLLTRVGFVKEVGSVRNFVIVDAGMNDLIRPALYGAYHHIIVANR 343 (431)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCEEEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHCCCEEEEECCC
T ss_conf 99999999886775279963799922600020451789987668746857899998077550012564336325775266
Q ss_pred ------CCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEE-EECC
Q ss_conf ------864599862333666455213566778879899996887022324347689988779999679909999-7389
Q gi|254780741|r 286 ------GPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAI-REFS 358 (367)
Q Consensus 286 ------~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~-r~e~ 358 (367)
..++++|+||+|||+|+|++++.+|++++||+|++.+||||++|||||||++|||++|++++ |++.+| ||||
T Consensus 344 Dr~~~~~~~~~~vvGp~CESGD~l~~Dr~Lp~~e~GD~lav~~aGAYG~SMSSnYN~rpR~AEVLv~~-g~~~LIR~RET 422 (431)
T TIGR01048 344 DRTNEEPTEVADVVGPICESGDVLAKDRELPEVEPGDLLAVFSAGAYGFSMSSNYNSRPRPAEVLVEG-GQARLIRRRET 422 (431)
T ss_pred CCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCEEEEEEC-CEEEEEEEECC
T ss_conf 67566772168971783445440014124544478857997247874314423016667623567867-82899996168
Q ss_pred HHHHHHHC
Q ss_conf 89998742
Q gi|254780741|r 359 YNDYYNNL 366 (367)
Q Consensus 359 ~~d~~~~~ 366 (367)
++|+++..
T Consensus 423 ~~Dl~~~e 430 (431)
T TIGR01048 423 YEDLLALE 430 (431)
T ss_pred HHHHHHHC
T ss_conf 79998532
No 2
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=0 Score=620.31 Aligned_cols=342 Identities=45% Similarity=0.807 Sum_probs=317.1
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEECCCCCH
Q ss_conf 85689779999999999999853369869995410599999999985187489807999989873688010885377780
Q gi|254780741|r 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYNVAYKD 83 (367)
Q Consensus 4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~~~~~~ 83 (367)
|||||||++.|++|+++++.+++.++++++||+||||+++|+++|++.|+|+||+|++|+++|++.++++.|+|+|++++
T Consensus 1 TP~YVyd~~~i~~n~~~~~~~~~~~~~~i~YA~KAN~~~~il~~l~~~g~G~d~~S~~E~~la~~~~~~~~~~~~~~~~~ 80 (346)
T cd06829 1 TPCYVLDEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTASSLFEARLGREEFGGEVHTYSPAYRD 80 (346)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCEEECCCCCH
T ss_conf 98999759999999999999773389879998824288899999997499699749999999741068764675687998
Q ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEE
Q ss_conf 34788613886898567205999999861234561489963577443101245578643574278888743149606653
Q gi|254780741|r 84 CEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMF 163 (367)
Q Consensus 84 ~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~ 163 (367)
+||+++++.+..|++||++||+++.++++..+.+|+|||||+++..+++.+++|.+.||||++.+++.+....++.|+||
T Consensus 81 ~el~~~~~~~~~i~~ds~~El~~i~~~~~~~~~~V~lRINP~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~i~Glh~ 160 (346)
T cd06829 81 DEIDEILRLADHIIFNSLSQLERFKDRAKAAGISVGLRINPEYSEVETDLYDPCAPGSRLGVTLDELEEEDLDGIEGLHF 160 (346)
T ss_pred HHHHHHHHCCCEEEECCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 99999997299899889999999998740589749999858987776766057898440378799987877735861477
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEE
Q ss_conf 05656661478999999999898650887508753377666445568078999999875421650453002201457418
Q gi|254780741|r 164 HNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTT 243 (367)
Q Consensus 164 H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~ 243 (367)
|++||+ +.+.+.+.++.+.+.+.+...++++||+||||++++++++++.+++.++++.++++++|++||||||||+||+
T Consensus 161 H~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~id~GGG~~i~~~~~d~~~~~~~i~~~~~~~~~~liiEPGR~lVa~aG~ 239 (346)
T cd06829 161 HTLCEQ-DFDALERTLEAVEERFGEYLPQLKWLNLGGGHHITRPDYDVDRLIALIKRFKEKYGVEVYLEPGEAVALNTGY 239 (346)
T ss_pred EECCCC-CHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHCCEE
T ss_conf 633675-6999999999999999975210144551377666788879999999999999763973685363400435357
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEE
Q ss_conf 887887863044333433335656566400134553000----2478645998623336664552135667788798999
Q gi|254780741|r 244 LNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIY----PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRIS 319 (367)
Q Consensus 244 lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~ 319 (367)
+|++|+++|+++++|+++|+|+++||++.+.+++++.+. +.+...+|+|+||+|+++|+|+++.+++++++||+|+
T Consensus 240 llt~V~~ik~~g~~~~i~D~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~v~Gp~Ces~Dvl~~~~~~~~l~~GD~l~ 319 (346)
T cd06829 240 LVATVLDIVENGMPIAILDASATAHMPDVLEMPYRPPIRGAGEPGEGAHTYRLGGNSCLAGDVIGDYSFDEPLQVGDRLV 319 (346)
T ss_pred EEEEEEEEEECCEEEEEEECCCCCCCCHHHCCCCCHHHHCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCEEE
T ss_conf 99999999509778999836210376155514654233047888788846999878988867888666888999999999
Q ss_pred EECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 968870223243476899887799996
Q gi|254780741|r 320 FEDVAGYNINRKNWFNGINMPTIAVKN 346 (367)
Q Consensus 320 i~~~GAY~~~~~~~Fn~~~~P~~v~~~ 346 (367)
|.++||||++|+|+||++|+|++|+++
T Consensus 320 i~~~GAY~~smas~yN~~p~Pavv~~d 346 (346)
T cd06829 320 FEDMAHYTMVKTNTFNGVRLPSIAIRD 346 (346)
T ss_pred ECCCCHHHHHHHCCCCCCCCCCEEEEC
T ss_conf 915758766763127899998579839
No 3
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=0 Score=609.52 Aligned_cols=355 Identities=15% Similarity=0.209 Sum_probs=301.8
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCC----CCEEE
Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-36880----10885
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGG----ETHAY 77 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~----~~i~~ 77 (367)
+|||||||++.|++|+++++.+ ..++||+||||+++|++++++.|+|+||+|.+|+++|+ +||++ ++|+|
T Consensus 17 GTP~yVyd~~~i~~~~~~l~~~-----~~i~YAvKAN~~~~il~~l~~~G~g~DvaS~gEl~~al~aG~~~~~~~~~Iif 91 (412)
T PRK11165 17 GTPVWVYDADIIRRQIAQLKQF-----DVIRFAQKACSNIHILRLMREQGVKVDAVSLGEIERALAAGYSPGTEPDDIVF 91 (412)
T ss_pred CCCEEEEEHHHHHHHHHHHHCC-----CCEEEEHHHCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEE
T ss_conf 9987998699999999986266-----82488626488899999999849966887999999999759998998552387
Q ss_pred C-CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---
Q ss_conf 3-777803478861388689856720599999986123456148996357744310124557864357427888874---
Q gi|254780741|r 78 N-VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES--- 153 (367)
Q Consensus 78 ~-~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~--- 153 (367)
+ |.|+.++++.+++.+..+++||++||++|.++++ +.+|+|||||++..+++...++|++.||||++.+++.+.
T Consensus 92 ~g~~k~~~~l~~a~~~gv~in~ds~~eL~~i~~~~~--~~~V~lRiNP~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 169 (412)
T PRK11165 92 TADLIDRATLARVSELKIPVNAGSIDMLDQLGQVSP--GHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAV 169 (412)
T ss_pred CCCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHCC--CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 786579999999998499782287899999986466--884699956886877664334688755567899999999999
Q ss_pred ---HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHH----HHHH
Q ss_conf ---3149606653056566614789999999998986508875087533776664455----6807899999----9875
Q gi|254780741|r 154 ---EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRL----KEFS 222 (367)
Q Consensus 154 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i----~~~~ 222 (367)
...++.|||||+|||+ +...+.+.++.+.+...+++.++++|||||||+++|.+ .+++++...+ +.+.
T Consensus 170 ~~~~~l~~~GlH~HiGS~i-~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGfgv~Y~~~~~~~d~~~~~~~~~~~~~~i~ 248 (412)
T PRK11165 170 IQRYGLKLVGIHMHIGSGV-DYGHLEQVCGAMVRQVIELGQDIEAISAGGGLSIPYRSGEEPVDTEHYFGLWNAARKQIA 248 (412)
T ss_pred HHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9867997898889538887-769999999999999998088731576158666478889889899999999999999999
Q ss_pred HHC--CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC-------CCCEEEE
Q ss_conf 421--65045300220145741888788786304-4333433335656566400134553000-24-------7864599
Q gi|254780741|r 223 EKY--SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY-PN-------TGPYTAM 291 (367)
Q Consensus 223 ~~~--~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~ 291 (367)
+.+ +++|++||||||||+||++||+|+++|++ +++|+++|+|||+++||.+|..+++... +. ....+++
T Consensus 249 ~~~~~~~~l~iEPGR~lva~aG~llt~V~~~K~~~~~~~~~vD~Gmn~l~rpalyga~h~i~~~~~~~~~~~~~~~~~~~ 328 (412)
T PRK11165 249 RHLGHPVKLEIEPGRFLVAESGVLVTQVRAVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISVLAADGRSLEHAPLVETV 328 (412)
T ss_pred HHCCCCCEEEECCCCEEECCCCEEEEEEEEEEECCCCCEEEECCCHHCCCCCHHCCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf 85299846998257267315528999999999728765899725420154302213454268825667776568755689
Q ss_pred EECCCCCCCCEEEEC-------CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHH
Q ss_conf 862333666455213-------5667788798999968870223243476899887799996799099997-38989998
Q gi|254780741|r 292 VCGRSCLAGDIFGEF-------HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYY 363 (367)
Q Consensus 292 v~G~~C~~~D~l~~~-------~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~ 363 (367)
|+||+|+|+|+|+++ +.+|++++||+|+|.++|||+++|+|+||++|+|++|+++ +|+.+++| |||+||++
T Consensus 329 v~Gp~Ces~D~l~~~~~~~i~~~~LP~l~~GD~l~i~~~GAY~~smss~yN~rp~paeVlv~-~g~~~lir~ret~edl~ 407 (412)
T PRK11165 329 VAGPLCESGDVFTQQEGGVVETRALPQVKVGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELL 407 (412)
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE-CCEEEEEEECCCHHHHH
T ss_conf 88679886243343666531444488899989999916881617660212599988089999-99999998089999997
Q ss_pred HHC
Q ss_conf 742
Q gi|254780741|r 364 NNL 366 (367)
Q Consensus 364 ~~~ 366 (367)
++.
T Consensus 408 ~~e 410 (412)
T PRK11165 408 ALE 410 (412)
T ss_pred HHC
T ss_conf 403
No 4
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=603.69 Aligned_cols=344 Identities=27% Similarity=0.358 Sum_probs=307.2
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C
Q ss_conf 8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V 79 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~ 79 (367)
.+|||||||++.|++|+++++.+++..+++++||+|||+++.|+++|+++|+|+||+|++|+++|++ |+++++|+|+ +
T Consensus 25 ~gTP~yvyd~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S~gEl~~al~aG~~~~~I~f~g~ 104 (394)
T COG0019 25 FGTPVYVYDEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVASLGELELALAAGFPPERIVFSGP 104 (394)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEECCHHHHHHHHHCCCCHHEEEECCC
T ss_conf 69988998479999999999986156781599997468987999999973888653489999999983999220999189
Q ss_pred CCCHHHHHHHHCCCCE-EEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH---H---
Q ss_conf 7780347886138868-98567205999999861234561489963577443101245578643574278888---7---
Q gi|254780741|r 80 AYKDCEIDAVLSNCDT-IIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI---E--- 152 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~-i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~---~--- 152 (367)
+|+++||+.|++.+.. |++||++||++|.+++.+...+|+|||||+++.++|+.+++|.+.||||++.+++. +
T Consensus 105 ~ks~~ei~~a~e~gi~~i~vdS~~El~~l~~~a~~~~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~~~~ 184 (394)
T COG0019 105 AKSEEEIAFALELGIKLINVDSEEELERLSAIAPGLVARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLERAA 184 (394)
T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999869938997999999999986456674499998899877758666778630236989889899999986
Q ss_pred -HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCCCC-CC---CHHHHHHHHHHHH
Q ss_conf -4314960665305656661478999999999898650----8875087533776664455-68---0789999998754
Q gi|254780741|r 153 -SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----ITQIEWISLGGGIHFTDKD-YP---VKDFCQRLKEFSE 223 (367)
Q Consensus 153 -~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~~~l~~idiGGG~~~~~~~-~~---~~~~~~~i~~~~~ 223 (367)
....++.|+|||+|||+.+.+.|..+++.+.+++.++ |.++++||+||||+++|.+ ++ ++.+++.+++..+
T Consensus 185 ~~~~l~~~Glh~HiGSq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~gi~Y~~~~~~~~~~~~~~~l~~~~~ 264 (394)
T COG0019 185 KLLGLELVGLHFHIGSQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGLGITYEDEYDPPDLAAYAKALKEAFG 264 (394)
T ss_pred HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 46788248999851787888089999999999999998875088740899669857687887884019999999999985
Q ss_pred H--CCCEEEEEHHHHCCCCCEEEEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--C--CCCCEEEEEECCC
Q ss_conf 2--1650453002201457418887887863044-333433335656566400134553000--2--4786459986233
Q gi|254780741|r 224 K--YSVQIYLEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPDYLLYQESATIY--P--NTGPYTAMVCGRS 296 (367)
Q Consensus 224 ~--~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~-~~~v~vd~g~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~G~~ 296 (367)
+ .+++|++||||+||++||+|+|+|+++|+++ ++|+++|+||+++|||++++++++... . +...+++.|+||+
T Consensus 265 ~~~~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v~vD~gm~~~~rpaly~a~~~~~~~~~~~~~~~~~~~v~G~~ 344 (394)
T COG0019 265 EYAEDVELILEPGRAIVANAGVLVTEVLDVKENGERNFVIVDGGMNDLMRPALYGAYHHIRLNRTDEDAEREEYDVVGPT 344 (394)
T ss_pred HCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 15678659983775775154369999999997077269998034423867777587443312456678873799998787
Q ss_pred CCCCCEEEECCCCCCC-CCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 3666455213566778-879899996887022324347689988779999
Q gi|254780741|r 297 CLAGDIFGEFHFEKPV-KIGDRISFEDVAGYNINRKNWFNGINMPTIAVK 345 (367)
Q Consensus 297 C~~~D~l~~~~~~~~l-~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~ 345 (367)
|+++|+|+.++.+|++ ++||+|+|.++|||+++|+++||++|+|++|++
T Consensus 345 CesgD~~~~d~~lp~~~~~GD~l~i~~aGAY~~sm~s~yN~~~~~~ev~v 394 (394)
T COG0019 345 CESGDVLARDRALPEPLKVGDLLVILDAGAYGASMSSNYNGRPRPAEVLV 394 (394)
T ss_pred CCCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf 68887771212378768989999990463267766043569899853559
No 5
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=0 Score=600.23 Aligned_cols=343 Identities=20% Similarity=0.270 Sum_probs=302.3
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367)
+|||||||++.|++|+++++++++.++++++||+||||++.+++.+++.|+|+||+|.+|+++|++ |+++++|+|+ |.
T Consensus 2 GTP~yv~d~~~l~~~~~~l~~~~~~~~~~i~yAvKaN~~~~il~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp~ 81 (373)
T cd06828 2 GTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGNG 81 (373)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 99889988999999999999860458978999862279999999999859918997999999999849995459981764
Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf 7803478861388-6898567205999999861234--56148996357744310124557864357427888874----
Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---- 153 (367)
Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---- 153 (367)
|+++||+.|++.+ ..|++||++||++|.+++++.+ .+|+|||||+++..+++..+++.+.||||++.+++.+.
T Consensus 82 K~~~~i~~A~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~ 161 (373)
T cd06828 82 KSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRA 161 (373)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 11378999997398567629999999999862761998549999888988777762313775321389999999999999
Q ss_pred ---HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHHHH
Q ss_conf ---31496066530565666147899999999989865---08875087533776664455----680789999998754
Q gi|254780741|r 154 ---EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH---FITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEFSE 223 (367)
Q Consensus 154 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~---~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~ 223 (367)
...++.|||||+|||+.+.+.|.+.++.+.+++++ .+.++++|||||||+++|.+ .+++++++.+++..+
T Consensus 162 ~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~~l~ 241 (373)
T cd06828 162 KELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEALK 241 (373)
T ss_pred HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 85799846887886476668879999999999999999997499865774368746457888899899999999999999
Q ss_pred HC-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEE
Q ss_conf 21-----65045300220145741888788786304-43334333356565664001345530002----4786459986
Q gi|254780741|r 224 KY-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVC 293 (367)
Q Consensus 224 ~~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~ 293 (367)
++ ++++++||||+||++||++||+|+++|++ +++|+++|+||++++||.++..+++.... ....++++|+
T Consensus 242 ~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~D~g~~~~~rP~ly~~~~~i~~~~~~~~~~~~~~~v~ 321 (373)
T cd06828 242 ELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEIVPVNKPGEGETEKVDVV 321 (373)
T ss_pred HHHCCCCCCEEEEECCHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEE
T ss_conf 97424898679990426865067569999999996498089997786344556565177561176488888982489998
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 2333666455213566778879899996887022324347689988779999
Q gi|254780741|r 294 GRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK 345 (367)
Q Consensus 294 G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~ 345 (367)
||||+++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|++
T Consensus 322 Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~FNg~p~p~~V~v 373 (373)
T cd06828 322 GPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVLV 373 (373)
T ss_pred CCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf 3698988788846427899999999992986223755487779999978979
No 6
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=0 Score=584.56 Aligned_cols=340 Identities=17% Similarity=0.157 Sum_probs=297.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-C--CCCCCCEEEC
Q ss_conf 888568977999999999999985336986999541059999999998518748980799998987-3--6880108853
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-E--KFGGETHAYN 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~--g~~~~~i~~~ 78 (367)
..||+||||.+.++.+.+.+...-.. -++||||||||+|.||++|.+.|+||||+|.+|++.++ . |++|++|+|+
T Consensus 504 ~~~~~yvy~~~~~~~~~~~~~~~~~~--d~~fYAVKaN~~P~IL~~La~lG~GFDcaS~gEl~~vL~~~~Gv~p~rIifa 581 (865)
T PRK08961 504 AGTPRYVYHLPTVRARARALAALAAI--DQRYYAIKANPHPAILRTLEEEGFGLECVSIGELRRVFKALPELSPRRVLFT 581 (865)
T ss_pred CCCCEEEECHHHHHHHHHHHHCCCCH--HHEEEEEECCCCHHHHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 57973896669999999998632531--1358998508998999999983898366699999999960279593318979
Q ss_pred -CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-----
Q ss_conf -77780347886138868985672059999998612345614899635774431012455786435742788887-----
Q gi|254780741|r 79 -VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----- 152 (367)
Q Consensus 79 -~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----- 152 (367)
|.|+..|+++|++.|..+++||.+||+++.++++ +.+|.|||||+++.+++..+.+|++.+|||++.+++.+
T Consensus 582 ~~~K~~~ei~~A~~~gV~~t~Ds~~EL~ki~~~~~--~a~v~LRInP~~~~g~h~~istGg~~sKFGi~~~~~~~ll~~A 659 (865)
T PRK08961 582 PSFAPRAEYEAAFALGVTVTVDNVEALRNWPEVFR--GREVWLRIDLGHGDGHHEKVRTGGKESKFGLSSTRIDEFVDLA 659 (865)
T ss_pred CCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999997799899838999999998778--9859999758999887775137999888898899999999999
Q ss_pred -HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHHHHC-C
Q ss_conf -431496066530565666147899999999989865088750875337766644556----8078999999875421-6
Q gi|254780741|r 153 -SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFSEKY-S 226 (367)
Q Consensus 153 -~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~~~~-~ 226 (367)
....++.|+|||+|||+.+.+.|.++++.+.++..+++ ++++|||||||+++|.+. +++.+.+.+.++...+ +
T Consensus 660 k~~gL~vvGihfHVGSg~~d~~~~~~a~~~~~~la~~~~-~l~~LDiGGGfgv~y~~~~~~~d~~~~~~~l~~~~~~~~~ 738 (865)
T PRK08961 660 KTLGITVTGLHAHLGSGVETGDHWRRMYDELAGFARRIG-TVETIDIGGGLPIPYSPGDEPFDLDAWDAGLAEVKAVHPG 738 (865)
T ss_pred HHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 876996799997427788998999999999999998529-9709985899888889998886999999999997603899
Q ss_pred CEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEECCCCCCCC
Q ss_conf 5045300220145741888788786304-43334333356565664001345530002----478645998623336664
Q gi|254780741|r 227 VQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVCGRSCLAGD 301 (367)
Q Consensus 227 ~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~G~~C~~~D 301 (367)
+++|+|||||+|++||+|+++|+++|++ +++|+++|+|||+++||.+|..++++... +....+++|+||+|+|+|
T Consensus 739 ~~li~EPGRylVa~AG~Llt~V~~ik~~~~~~fv~vDaGmn~liRPaLYga~H~I~~l~~~~~~~~~~~~VvGPiCES~D 818 (865)
T PRK08961 739 YRLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLDAGMNSLIRPALYDAWHEIENLSRLDEPPAGTADVVGPICESSD 818 (865)
T ss_pred CEEEEECCCEEEECCEEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHCCCCCCEEECCCCCCCCCCEEEEECCCCCCCC
T ss_conf 66999688151210118999999997569835999946634555635417645304247778888765689837848862
Q ss_pred EEEECCCCCC-CCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 5521356677-88798999968870223243476899887799996
Q gi|254780741|r 302 IFGEFHFEKP-VKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKN 346 (367)
Q Consensus 302 ~l~~~~~~~~-l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~ 346 (367)
+|++++.+|+ +++||+|+|.|+|||+++|+|+||++|+|++++++
T Consensus 819 ~~~~~~~LP~~~~~GD~L~~~~aGAYg~smaS~yN~Rp~p~Evlvd 864 (865)
T PRK08961 819 VFGKRRRLPAATAPGDVILIADTGAYGYSMASTYNLREPPREVVLD 864 (865)
T ss_pred EEEECCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCEEEEC
T ss_conf 7411562887689999999918984517762456689998767733
No 7
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=0 Score=579.65 Aligned_cols=341 Identities=14% Similarity=0.178 Sum_probs=289.2
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367)
+|||||||++.|++|+++++.++.. +++++||+||||++.||++|++.|+|+||+|.+|+++|++ |+++++|+|+ |.
T Consensus 24 ~TPlyVyd~~~l~~~~~~l~~a~p~-~~~i~YAvKaN~~~~il~~l~~~G~g~DvaS~gEl~~al~~G~~~~~Ii~~gp~ 102 (398)
T TIGR03099 24 GTPFYAYDRGLVSERVAALRKALPE-ELAIHYAVKANPMPALLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFAGPG 102 (398)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCHHEEECCCC
T ss_conf 9998996699999999999985799-984999960289999999999819929996999999999849991001778998
Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf 78034788613886898567205999999861234--56148996357744310124557864357427888874-----
Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----- 153 (367)
Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----- 153 (367)
|+++||+.|++.+..|++||++||++|.+++++.+ .+|+|||||++....+. ..+++..||||++.+++.+.
T Consensus 103 K~~~~l~~A~~~gv~i~vDS~~El~~i~~~a~~~~~~~~i~lRinp~~~~~~~~-~~~~~~~sKFGi~~~~~~~~l~~~~ 181 (398)
T TIGR03099 103 KTDAELRRALAAGVLINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSG-MKMGGGAKQFGIDAEQVPAALAFIK 181 (398)
T ss_pred CCHHHHHHHHHCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-EECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 797999988756059964446889999998876599606998616887668786-0128885546789999999999998
Q ss_pred -HHCCCEEEEECCCCCCCCHHHHHHHHHH----HHHHHHHCCCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHH
Q ss_conf -3149606653056566614789999999----99898650887508753377666445----56807899999987542
Q gi|254780741|r 154 -EIKNVNGLMFHNNCENKSFLCFSAMLKN----IEKEFGHFITQIEWISLGGGIHFTDK----DYPVKDFCQRLKEFSEK 224 (367)
Q Consensus 154 -~~~~i~Gih~H~gs~~~~~~~~~~~l~~----~~~~~~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~~i~~~~~~ 224 (367)
...++.|||||+|||+.+.+.|.+.+.. +.++.++++..+++|||||||+++|. ..+++.+++.+++..++
T Consensus 182 ~~~l~~~Glh~HiGS~~~~~~~~~~a~~~~~~~~~~l~~~~g~~l~~idiGGGf~v~y~~~~~~~d~~~~~~~i~~~~~~ 261 (398)
T TIGR03099 182 AADLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLAESAPAPVRVINIGGGFGIPYFPGNPPLDLAPVGAALAALFAR 261 (398)
T ss_pred HCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 66992999899269898896999999999999999999975997527762576576778999886999999999999998
Q ss_pred C-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCC-----CCCCCCCCCC----CCCCCEE
Q ss_conf 1-----65045300220145741888788786304-433343333565656640-----0134553000----2478645
Q gi|254780741|r 225 Y-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDY-----LLYQESATIY----PNTGPYT 289 (367)
Q Consensus 225 ~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~-----~~~~~~~~~~----~~~~~~~ 289 (367)
+ +++||+|||||||++||++|+||+++|++ +++|+++|+|||+++++. ++...++... +.....+
T Consensus 262 ~~~~~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~D~G~~~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 341 (398)
T TIGR03099 262 LRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISRGETFLVTDGGLHHHLSASGNFGQVIRRNYPVVIGNRIGGAVREI 341 (398)
T ss_pred HHHCCCCCEEEEECCCEECCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCEEE
T ss_conf 76127987799906703200671899999999843981799947843025333431034310255056146788987558
Q ss_pred EEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEE
Q ss_conf 998623336664552135667788798999968870223243-47689988779999
Q gi|254780741|r 290 AMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVK 345 (367)
Q Consensus 290 ~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~ 345 (367)
++|+||+|+++|+|+++..+|++++||+|+|.++|||+++|+ ++||++|+|++|++
T Consensus 342 ~~v~Gp~C~s~D~l~~~~~LP~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~paEvlv 398 (398)
T TIGR03099 342 ASIVGPLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASASPLAFLGHPEAVELLV 398 (398)
T ss_pred EEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 999912888446888377168899999999948454068762404039999868869
No 8
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=0 Score=576.64 Aligned_cols=342 Identities=16% Similarity=0.173 Sum_probs=294.9
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEEC-CCC
Q ss_conf 8856897799999999999998533698699954105999999999851874898079999898736880108853-777
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYN-VAY 81 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~-~~~ 81 (367)
|||.||||+++|++|+++|+.++. .+++++||+||||++.|+++|.+.|+|+||+|.+|++++++++++++|+|+ |.|
T Consensus 1 ~~~~YVyd~~~l~~~~~~l~~a~p-~~~~~~YAvKaN~~~~il~~l~~~G~g~DvaS~~El~~~~~~~~~~~Iif~gp~K 79 (377)
T cd06843 1 PLCAYVYDLAALRAHARALRASLP-PGCELFYAIKANSDPPILRALAPHVDGFEVASGGEIAHVRAAVPDAPLIFGGPGK 79 (377)
T ss_pred CCCEEEECHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 986799609999999999998579-9984999960388999999999769968982999999998539996479889999
Q ss_pred CHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 803478861388-6898567205999999861234--561489963577443101245578643574278888743----
Q gi|254780741|r 82 KDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE---- 154 (367)
Q Consensus 82 ~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~---- 154 (367)
+++||+.|++.| ..+++||++||++|.+++++.+ .+|+|||||+.....+....++++.||||++.+++.+..
T Consensus 80 ~~~~l~~a~~~gv~~i~~DS~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFGi~~~~~~~~l~~~~ 159 (377)
T cd06843 80 TDSELAQALAQGVERIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQPTPFGIDEADLPDALELLR 159 (377)
T ss_pred CHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999987998899889999999998788619962899999678777775542058888778989899999999998
Q ss_pred ---HCCCEEEEECCCCCCCCHHHHHHHHHHHHH----HHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHHHH
Q ss_conf ---149606653056566614789999999998----986508875087533776664455----680789999998754
Q gi|254780741|r 155 ---IKNVNGLMFHNNCENKSFLCFSAMLKNIEK----EFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEFSE 223 (367)
Q Consensus 155 ---~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~----~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~~~ 223 (367)
..++.|||||+|||+.+.+.|.++++.+.+ +.++++.++++|||||||+++|.+ .+++++++.+++..+
T Consensus 160 ~~~~l~~~Glh~HvGS~~~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~iDiGGGf~v~y~~~~~~~d~~~~~~~i~~~~~ 239 (377)
T cd06843 160 DLPNIRLRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYADPEEQFDWAGFCEGLDQLLA 239 (377)
T ss_pred HCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 28998567777733678889799999999999999999997199731465058624467888888898999999999998
Q ss_pred HC--CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-C-----------CCCCCE
Q ss_conf 21--65045300220145741888788786304-433343333565656640013455300-0-----------247864
Q gi|254780741|r 224 KY--SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATI-Y-----------PNTGPY 288 (367)
Q Consensus 224 ~~--~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~-~-----------~~~~~~ 288 (367)
++ +++|++|||||||++||+++++|+++|++ +++|+++|+|++++++|.++...++.. . +....+
T Consensus 240 ~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~~d~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (377)
T cd06843 240 EYEPGLTLRFECGRYISAYCGYYVTEVLDLKRSHGEWFAVLRGGTHHFRLPAAWGHNHPFSVLPVEEWPYPWPRPSVRDT 319 (377)
T ss_pred HCCCCCEEEECCCCEEEECCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 52998779975752787143499999999975199379998155344424134136684488753445555577666775
Q ss_pred EEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEE
Q ss_conf 5998623336664552135667788798999968870223243-47689988779999
Q gi|254780741|r 289 TAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVK 345 (367)
Q Consensus 289 ~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~ 345 (367)
+++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|+ ++||++|+|++|++
T Consensus 320 ~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~P~~v~i 377 (377)
T cd06843 320 PVTLVGQLCTPKDVLARDVPVDRLRAGDLVVFPLAGAYGWNISHHDFLMHPHPERIYL 377 (377)
T ss_pred EEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCEEEC
T ss_conf 6999916989988887366878899999999958873017560354349999988869
No 9
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=0 Score=574.54 Aligned_cols=340 Identities=24% Similarity=0.343 Sum_probs=296.0
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CCC
Q ss_conf 85689779999999999999853369869995410599999999985187489807999989873-6880108853-777
Q gi|254780741|r 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VAY 81 (367)
Q Consensus 4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~~ 81 (367)
|||||||++.|++|+++++.++. ++++++||+||||++.||+++.+.|+|+||+|++|+++|++ |+++++|+|+ |.|
T Consensus 1 TP~yv~d~~~l~~~~~~~~~~~~-~~~~i~YAvKaN~~~~vl~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp~K 79 (368)
T cd06810 1 TPFYVYDLDIIRAHYAALKEALP-SGVKLFYAVKANPNPHVLRTLAEAGTGFDVASKGELALALAAGVPPERIIFTGPAK 79 (368)
T ss_pred CCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEEECCCC
T ss_conf 98999869999999999997579-99789999653899999999998599189779999999998599944199945545
Q ss_pred CHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf 803478861388-6898567205999999861234--561489963577443101245578643574278888743----
Q gi|254780741|r 82 KDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE---- 154 (367)
Q Consensus 82 ~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~---- 154 (367)
++++|+.|++.+ ..|++||++||++|.+++++.+ .+|+|||||+.+...+ ..++++..||||++.+++.+..
T Consensus 80 ~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~i~lRinp~~~~~~~-~~~~~~~~sKFGi~~~~~~~~~~~~~ 158 (368)
T cd06810 80 SVSEIEAALASGVDHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTH-KISTGGLKSKFGLSLSEARAALERAK 158 (368)
T ss_pred CCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCE-EECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 30569999975978455579999999999998569997599999448787752-10368887767999999999999998
Q ss_pred --HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHC--
Q ss_conf --149606653056566614789999999998986---508875087533776664455--68078999999875421--
Q gi|254780741|r 155 --IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDKD--YPVKDFCQRLKEFSEKY-- 225 (367)
Q Consensus 155 --~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~-- 225 (367)
..++.|||||+|||+.+.+.|.+.++.+.++++ +.+.++++|||||||+++|.+ .+++++++.+++..+++
T Consensus 159 ~~~l~l~GlhfH~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~~~y~~~~~~~~~~~~~i~~~~~~~~~ 238 (368)
T cd06810 159 ELDLRLVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDEQPLDFEEYAALINPLLKKYFP 238 (368)
T ss_pred HCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 65996789999768776886999999999999999998629985346437885777888998999999999999998723
Q ss_pred ---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC---C---CCCCEEEEEECC
Q ss_conf ---65045300220145741888788786304-4333433335656566400134553000---2---478645998623
Q gi|254780741|r 226 ---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY---P---NTGPYTAMVCGR 295 (367)
Q Consensus 226 ---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~---~---~~~~~~~~v~G~ 295 (367)
++++++|||||+|++||+++++|+++|++ +.+|+++|+|+++++++.+++...+... . +....++.|+||
T Consensus 239 ~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~ 318 (368)
T cd06810 239 NDPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGGRFFAVVDGGMNHSFRPALAYDAYHPITPLKAPGPDEPLVPATLAGP 318 (368)
T ss_pred CCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEEECC
T ss_conf 47896899866445652436199999999975997189976643455662321688464286178888898669999755
Q ss_pred CCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 33666455213566778879899996887022324347689988779999
Q gi|254780741|r 296 SCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK 345 (367)
Q Consensus 296 ~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~ 345 (367)
||+++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|++
T Consensus 319 ~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~s~~Fn~~~~pa~vli 368 (368)
T cd06810 319 LCDSGDVIGRDRLLPELEVGDLLVFEDMGAYGFSESSNFNSHPRPAEYLV 368 (368)
T ss_pred CCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf 88868799568857889999999776947324766177889999978979
No 10
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=0 Score=574.65 Aligned_cols=341 Identities=18% Similarity=0.211 Sum_probs=289.7
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367)
+|||||||++.|++|+++|+.++.. .++++||+||||++.|+++|++.|+|+||+|++|++++++ ||++++|+|+ |.
T Consensus 6 GTP~yv~d~~~i~~~~~~l~~alp~-~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~ 84 (382)
T cd06839 6 GTPFYVYDRDRVRERYAALRAALPP-AIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKILFAGPG 84 (382)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 9988998799999999999985899-975999970489999999999749909998999999999859995310761687
Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---
Q ss_conf 7803478861388-68985672059999998612345--61489963577443101245578643574278888743---
Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE--- 154 (367)
Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~--- 154 (367)
|++++|++|++.+ ..|++||++||+++.+++++.+. +|+|||||+++..+.. ..++++.||||++.+++.+..
T Consensus 85 K~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~-~~~~g~~skFGi~~~~~~~~~~~~ 163 (382)
T cd06839 85 KSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSG-MKMGGGPSQFGIDVEELPAVLARI 163 (382)
T ss_pred CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 8889999999839957643867999999999986399746999981588778776-144788544589999999999999
Q ss_pred ----HCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHH
Q ss_conf ----14960665305656661478----999999999898650887508753377666445----568078999999875
Q gi|254780741|r 155 ----IKNVNGLMFHNNCENKSFLC----FSAMLKNIEKEFGHFITQIEWISLGGGIHFTDK----DYPVKDFCQRLKEFS 222 (367)
Q Consensus 155 ----~~~i~Gih~H~gs~~~~~~~----~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~~i~~~~ 222 (367)
..++.|||||+|||+.+.+. |+++++.+.++.++++.++++|||||||+++|. ..+++++++.+++..
T Consensus 164 ~~~~~l~~~Glh~H~GS~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~y~~~~~~~d~~~~~~~i~~~~ 243 (382)
T cd06839 164 AALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGETPLDLEALGAALAALL 243 (382)
T ss_pred HHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 84689837888983577778979999999999999999898659885177505873767889899989999999999999
Q ss_pred HHC-----CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCC-----CCCC-C---CCCCC
Q ss_conf 421-----65045300220145741888788786304-43334333356565664001345-----5300-0---24786
Q gi|254780741|r 223 EKY-----SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQE-----SATI-Y---PNTGP 287 (367)
Q Consensus 223 ~~~-----~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~-----~~~~-~---~~~~~ 287 (367)
+++ +++|++|||||+|++||+||++|+++|++ +++|+++|+|+++++++.+.... ++.. . .....
T Consensus 244 ~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 323 (382)
T cd06839 244 AELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQVLRRNYPLAILNRMGGEER 323 (382)
T ss_pred HHHHHCCCCCEEEEECCCEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCCCHHHCCHHHHHCCCCCEEECCCCCCCCE
T ss_conf 98642058968999135003215717999999998359957999907533441232232565314760782478888981
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEE
Q ss_conf 45998623336664552135667788798999968870223243-47689988779999
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVK 345 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~ 345 (367)
++++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|+ ++||++|+|++|++
T Consensus 324 ~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~PaeVlV 382 (382)
T cd06839 324 ETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVLV 382 (382)
T ss_pred EEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 69999898888877987054678899999999959866177750301369999888879
No 11
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=0 Score=567.69 Aligned_cols=337 Identities=17% Similarity=0.195 Sum_probs=296.0
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-C--CCCCCCEEECC-
Q ss_conf 8568977999999999999985336986999541059999999998518748980799998987-3--68801088537-
Q gi|254780741|r 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-E--KFGGETHAYNV- 79 (367)
Q Consensus 4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~--g~~~~~i~~~~- 79 (367)
+||||||++.|++|++++++++ +..+++||+||||++.||++|.+.|+|+||+|++|+++++ . |+++++|+|++
T Consensus 12 gP~yVyd~~~i~~~~~~~~~~~--~~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~~~G~~~~~Iv~~gp 89 (368)
T cd06840 12 GPCYVYDLETVRARARQVSALK--AVDSLFYAIKANPHPDVLRTLEEAGLGFECVSIGELDLVLKLFPDLDPRRVLFTPN 89 (368)
T ss_pred CCEEEEEHHHHHHHHHHHHHCC--CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHCCCCHHHEEECCC
T ss_conf 9889987999999999997257--87818999704899999999998199869989999999998646998688685678
Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf 77803478861388689856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------ 153 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------ 153 (367)
.|++++++.|++.|..|++||++||+++.++++. .+|+|||||+.+.+.+..+++++..||||++.+++.+.
T Consensus 90 ~K~~~~l~~A~~~gv~i~~Ds~~el~~i~~~~~~--~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~e~~~~l~~~~~ 167 (368)
T cd06840 90 FAARSEYEQALELGVNVTVDNLHPLREWPELFRG--REVILRIDPGQGEGHHKHVRTGGPESKFGLDVDELDEARDLAKK 167 (368)
T ss_pred CCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCC--CEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8999999999985995998889999999875258--80899982686876666420588602479987889999999985
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC----CCCCHHHHHHHHHHHHHC-CCE
Q ss_conf 314960665305656661478999999999898650887508753377666445----568078999999875421-650
Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDK----DYPVKDFCQRLKEFSEKY-SVQ 228 (367)
Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~~i~~~~~~~-~~~ 228 (367)
...++.|||||+|||+.+.+.|++.++.+.++.++++ ++++|||||||++++. ..+++.+.+.+.++..++ +++
T Consensus 168 ~~l~~~GlhfH~GS~~~~~~~~~~~~~~~~~~~~~~~-~~~~ldiGGGf~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~ 246 (368)
T cd06840 168 AGIIVIGLHAHSGSGVEDTDHWARHGDYLASLARHFP-AVRILNVGGGLGIPEAPGGRPIDLDALDAALAAAKAAHPQYQ 246 (368)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 7993899998678777898999999999999997365-523476447657478888886489999999999986489978
Q ss_pred EEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEECCCCCCCCEE
Q ss_conf 45300220145741888788786304-43334333356565664001345530002----47864599862333666455
Q gi|254780741|r 229 IYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVCGRSCLAGDIF 303 (367)
Q Consensus 229 l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~G~~C~~~D~l 303 (367)
||+||||+||++||+++|+|+++|++ +.+|+++|+|++++++|.++..+++.... ......++|+||||+++|+|
T Consensus 247 l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GptC~~~D~l 326 (368)
T cd06840 247 LWMEPGRFIVAESGVLLARVTQIKHKDGVRFVGLETGMNSLIRPALYGAYHEIVNLSRLDEPPAGNADVVGPICESGDVL 326 (368)
T ss_pred EEECCCHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCEE
T ss_conf 99814701322751799999999863883289988763455676770655502534778888854899983796722298
Q ss_pred EECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 213566778879899996887022324347689988779999
Q gi|254780741|r 304 GEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK 345 (367)
Q Consensus 304 ~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~ 345 (367)
+++..+|++++||+|+|.++|||+++|+++||++|+|++|++
T Consensus 327 ~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~fN~~p~p~~v~v 368 (368)
T cd06840 327 GRDRLLPETEEGDVILIANAGAYGFCMASTYNLREPAEEVVL 368 (368)
T ss_pred CCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEC
T ss_conf 946317889999999776826112576487789999877879
No 12
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=0 Score=564.82 Aligned_cols=344 Identities=18% Similarity=0.242 Sum_probs=292.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C
Q ss_conf 8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V 79 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~ 79 (367)
++||++|||++.|++|+++|+.+|. .+++++||+||||+|.||++|++.|+|+||+|.+|+++|++ ||++++|+|+ |
T Consensus 1 ~~~~~~vyD~~~i~~~~~~~~~afp-~~~~~~YAvKaN~~p~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp 79 (379)
T cd06836 1 VHPAVGLYDLDGFRALVARLTAAFP-APVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSP 79 (379)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf 9985899629999999999998589-986189998338999999999984997897399999999985999899898899
Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC---CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-----H
Q ss_conf 778034788613886898567205999999861234---56148996357744310124557864357427888-----8
Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH---KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK-----I 151 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~---~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~-----~ 151 (367)
.|+++||+.|++.|..|++||++||++|.+++++.+ .+|+|||||+...+.++...++...||||++.++. .
T Consensus 80 ~K~~~~l~~A~~~Gv~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~ 159 (379)
T cd06836 80 AKTRAELREALELGVAINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEII 159 (379)
T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 89999999999739920348989999999999862997525899971687766754344689989858881477899999
Q ss_pred HHH--HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----C-CCCEEEEECCCCCCCCCC----CCCHHHHHHHHH
Q ss_conf 743--14960665305656661478999999999898650----8-875087533776664455----680789999998
Q gi|254780741|r 152 ESE--IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----I-TQIEWISLGGGIHFTDKD----YPVKDFCQRLKE 220 (367)
Q Consensus 152 ~~~--~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~-~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~ 220 (367)
++. ..++.|||||+|||+.+.+.|.+.+..+.+++.++ + .++++|||||||+++|.. .+++++++.+++
T Consensus 160 ~~~~~~~~l~GlhfHvGSq~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~ 239 (379)
T cd06836 160 DAFARRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAALKA 239 (379)
T ss_pred HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99826797006898778888898999999999999999998860877632650378745467888889899999999999
Q ss_pred HHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCC---CC-----C-CCCC
Q ss_conf 75421---65045300220145741888788786304-43334333356565664001345530---00-----2-4786
Q gi|254780741|r 221 FSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESAT---IY-----P-NTGP 287 (367)
Q Consensus 221 ~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~---~~-----~-~~~~ 287 (367)
..+++ .++||+||||+|+++||+++++|+++|++ +++|+++|+|++.++++.+....++. .. + ....
T Consensus 240 ~l~~~f~~~~~li~EPGR~lva~ag~ll~~V~~vK~~~~~~~~i~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (379)
T cd06836 240 AVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPKTGPE 319 (379)
T ss_pred HHHHHCCCCCEEEECCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCE
T ss_conf 99975166856886055323046159999999999739868999951665553100243337446784067778678983
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEE
Q ss_conf 45998623336664552135667788798999968870223243476899887799996
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKN 346 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~ 346 (367)
.+++|+||||+++|+|+++..+|++++||+|+|.++|||+++|+++||++|+|+||.++
T Consensus 320 ~~~~v~Gp~C~~~D~l~~~~~lP~l~~GD~l~i~~~GAY~~s~~s~fN~~prPav~~v~ 378 (379)
T cd06836 320 VVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR 378 (379)
T ss_pred EEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE
T ss_conf 49999866878587986364888899999999879770506561888799888289972
No 13
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=0 Score=558.06 Aligned_cols=338 Identities=20% Similarity=0.304 Sum_probs=287.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC
Q ss_conf 88856897799999999999998533--6986999541059999999998518748980799998987-36880108853
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~ 78 (367)
.+|||||||++.|++|+++|+++++. ++++++||+||||++.+++++.+.|+|+||+|++|+++++ .|+++++|+|+
T Consensus 5 ~gTP~yv~d~~~l~~n~~~l~~~~~~~~p~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~g~~~~~Ii~~ 84 (379)
T cd06841 5 YGSPFFVFDEDALRENYRELLGAFKKRYPNVVIAYSYKTNYLPAICKILHEEGGYAEVVSAMEYELALKLGVPGKRIIFN 84 (379)
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCEEEEC
T ss_conf 09988998699999999999999876089829999962175899999999839985998999999999859993229988
Q ss_pred -CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--
Q ss_conf -77780347886138868985672059999998612345--6148996357744310124557864357427888874--
Q gi|254780741|r 79 -VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-- 153 (367)
Q Consensus 79 -~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-- 153 (367)
|.|+++||+.|++.+..|++||++||+++.+++++.+. +|+|||||..+ +...||||++.+++.+.
T Consensus 85 gp~K~~~~i~~a~~~g~~i~vDs~~El~~l~~~a~~~~~~~~i~lRvn~~~~---------~~~~skFG~~~~~~~~~l~ 155 (379)
T cd06841 85 GPYKSKEELEKALEEGALINIDSFDELERILEIAKELGRVAKVGIRLNMNYG---------NNVWSRFGFDIEENGEALA 155 (379)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCCCCCCCCHHHHHHHHH
T ss_conf 9989879999999859930448889999999999864997479999658888---------8864346999899999999
Q ss_pred --------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCC----------CCCCHHH
Q ss_conf --------314960665305656661478999999999898650-887508753377666445----------5680789
Q gi|254780741|r 154 --------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF-ITQIEWISLGGGIHFTDK----------DYPVKDF 214 (367)
Q Consensus 154 --------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~-~~~l~~idiGGG~~~~~~----------~~~~~~~ 214 (367)
...++.|||||+|||+.+.+.|.++++.+.+++.+. +.++++|||||||++++. ..+++++
T Consensus 156 ~~~~~~~~~~l~~~GlhfHvGS~~~d~~~~~~~~~~~~~~~~~~~~~~~~~idiGGGf~~~~~~~~~~~~~~~~~~~~~~ 235 (379)
T cd06841 156 ALKKIQESKNLSLVGLHCHVGSNILNPEAYSAAAKKLIELLDRLFGLELEYLDLGGGFPAKTPLSLAYPQEDTVPDPEDY 235 (379)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99987545897299999888987589899999999999999996199960998078757677765456788899999999
Q ss_pred HHHHHHHHHHC------CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 99999875421------65045300220145741888788786304-43334333356565664001345530002---4
Q gi|254780741|r 215 CQRLKEFSEKY------SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---N 284 (367)
Q Consensus 215 ~~~i~~~~~~~------~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~ 284 (367)
++.+.+..+++ +++|++|||||||++||+++++|+++|+. +++|+++|+|+++..++.++.++...... +
T Consensus 236 ~~~i~~~l~~~~~~~~~~~~li~EPGR~lv~~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~ 315 (379)
T cd06841 236 AEAIASTLKEYYANKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGRNIAVTDAGINNIPTIFWYHHPILVLRPGKED 315 (379)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCEEEEEEEEEEEEECCCEEEEECCCCCCCCCHHHCCCCEEEECCCCCC
T ss_conf 99999999985510278866998167111114157999999999609927999826645771746569877955788888
Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 78645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG 349 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g 349 (367)
....++.|+||||+++|+|+++..+|++++||+|+|.|+||||++|+++|| +|+|++|++++||
T Consensus 316 ~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~f~-~prPa~vlv~~~g 379 (379)
T cd06841 316 PTSKNYDVYGFNCMESDVLFPNVPLPPLNVGDILAIRNVGAYNMTQSNQFI-RPRPAVYLIDNNG 379 (379)
T ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCC-CCCCCEEEEECCC
T ss_conf 983089998878663569903513789999999978783754574618788-8778299993989
No 14
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=0 Score=555.72 Aligned_cols=333 Identities=19% Similarity=0.236 Sum_probs=277.4
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC
Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-36880108853-77
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~ 80 (367)
+|||||||++.|++|++++++++ ++++++||+||||++.|++++++.|+|+||+|++|+++|+ +|+++++|+|+ |.
T Consensus 1 ~TP~yvyd~~~i~~~~~~l~~af--p~~~i~YA~KaN~~~~vl~~l~~~G~g~dv~S~~El~~al~~G~~~~~Iif~gp~ 78 (362)
T cd00622 1 ETPFLVVDLGDVVRKYRRWKKAL--PRVRPFYAVKCNPDPAVLRTLAALGAGFDCASKGEIELVLGLGVSPERIIFANPC 78 (362)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 99889945999999999999868--9987999966589899999999739919982999999999849987895845887
Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf 7803478861388-6898567205999999861234561489963577443101245578643574278888743-----
Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----- 154 (367)
Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----- 154 (367)
|+++||+.|++.+ ..|++||++||++|.+++++ .+|+|||||+.+...++ ..+|||++.+++.+..
T Consensus 79 K~~~el~~a~~~gv~~i~vDS~~EL~~i~~~~~~--~~i~lRv~~~~~~~~~~------~~~KFGi~~~~~~~~l~~~~~ 150 (362)
T cd00622 79 KSISDIRYAAELGVRLFTFDSEDELEKIAKHAPG--AKLLLRIATDDSGALCP------LSRKFGADPEEARELLRRAKE 150 (362)
T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCC--CCEEEEECCCCCCCCCC------CCCCCCCCHHHHHHHHHHHHH
T ss_conf 8879999999749966772789999999986777--82699986699987335------777579999999999999986
Q ss_pred -HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHC---
Q ss_conf -14960665305656661478999999999898---650887508753377666445--568078999999875421---
Q gi|254780741|r 155 -IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDK--DYPVKDFCQRLKEFSEKY--- 225 (367)
Q Consensus 155 -~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~--~~~~~~~~~~i~~~~~~~--- 225 (367)
..++.|||||+|||+.+.+.|.++++.+.+++ .+++.++++||+|||||+++. +.+++++++.+++..+++
T Consensus 151 ~~l~~~GlH~H~GS~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGG~~~~y~~~~~~~~~~~~~i~~~~~~~~~~ 230 (362)
T cd00622 151 LGLNVVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSYDGVVPSFEEIAAVINRALDEYFPD 230 (362)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 29956889987687768979999999999999999997599976798379836788889999899999999999986486
Q ss_pred -CCEEEEEHHHHCCCCCEEEEEEEEEEECCC----CCCCCCCCCCCCCCCCCCCC-CCCCCC-C----CCCCCEEEEEEC
Q ss_conf -650453002201457418887887863044----33343333565656640013-455300-0----247864599862
Q gi|254780741|r 226 -SVQIYLEPGEAIVTNTTTLNTTVLDISENI----KNLVIVDSSVEAHVPDYLLY-QESATI-Y----PNTGPYTAMVCG 294 (367)
Q Consensus 226 -~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~----~~~v~vd~g~~~~~~~~~~~-~~~~~~-~----~~~~~~~~~v~G 294 (367)
+++||+||||+||++||+++|+|+++|+.+ .+|+++|+|+++.+.+..+. .+++.. . ..+...+++|+|
T Consensus 231 ~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~~~vd~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 310 (362)
T cd00622 231 EGVRIIAEPGRYLVASAFTLAVNVIAKRKRGDDDRERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGGRDGELYPSSLWG 310 (362)
T ss_pred CCCEEEECCHHHHCCCEEEEEEEEEEEEECCCCCCEEEEEECCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCEEEEEEC
T ss_conf 79779985604520140799999999986078872699998478751154676437767168105888789801899984
Q ss_pred CCCCCCCEEEECCCCC-CCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 3336664552135667-78879899996887022324347689988779999
Q gi|254780741|r 295 RSCLAGDIFGEFHFEK-PVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK 345 (367)
Q Consensus 295 ~~C~~~D~l~~~~~~~-~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~ 345 (367)
|+|+++|+|+++..+| .+++||+|+|.|||||+++|+++||++|+|++|++
T Consensus 311 ~~C~~~D~l~~~~~lP~~l~~GD~l~i~~~GAY~~smss~fN~~p~p~~V~v 362 (362)
T cd00622 311 PTCDSLDVIYEDVLLPEDLAVGDWLLFENMGAYTTAYASTFNGFPPPKIVYV 362 (362)
T ss_pred CCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEC
T ss_conf 4888886983566578889999999995987051756287789899948969
No 15
>TIGR01047 nspC carboxynorspermidine decarboxylase; InterPro: IPR005730 Carboxynorspermidine synthase, mediates the nicotinamide-nucleotide-linked reduction of the Schiff base H2N(CH2)3N = CHCH2CH(NH2)COOH. This is formed from L-aspartic beta-semialdehyde (ASA) and 1,3-diaminopropane (DAP) and is reduced to carboxynorspermidine [H2N(CH2)3NH(CH2)2CH(NH2)COOH], an intermediate in the novel pathway for norspermidine biosynthesis shown in Vibrio alginolyticus.; GO: 0016830 carbon-carbon lyase activity, 0045312 nor-spermidine biosynthetic process.
Probab=100.00 E-value=0 Score=550.51 Aligned_cols=365 Identities=39% Similarity=0.723 Sum_probs=348.9
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHH-CCEEEEECHHHHHHHHCCCC-----CCCE
Q ss_conf 88856897799999999999998533698699954105999999999851-87489807999989873688-----0108
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQY-MDGTTSSSLYEVMLGHEKFG-----GETH 75 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~-g~g~dv~S~~E~~la~~g~~-----~~~i 75 (367)
|+||+||+|+++|++|+.-++...+.+|+++.-|.|..+.+.+.++|+++ ..|+.++|++|++||.+.|+ ++.+
T Consensus 1 i~tP~fvLeE~~L~~Nl~i~~~v~q~SG~kv~LALKGFa~w~~F~ilr~yGL~G~taSgL~EAkLA~E~fgGreshkE~H 80 (403)
T TIGR01047 1 IPTPAFVLEEEKLRKNLEILESVQQQSGAKVLLALKGFAFWGVFPILREYGLKGATASGLWEAKLAKEEFGGRESHKEVH 80 (403)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEE
T ss_conf 99984021578999999999986430872785311003232100102420477324267678863223138602676668
Q ss_pred EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHH--HCC-----C---CCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 853777803478861388689856720599999986--123-----4---561489963577443101245578643574
Q gi|254780741|r 76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKA--QKL-----H---KKIGLRINPSVSYSKFILADPNRPFSRLGE 145 (367)
Q Consensus 76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a--~~~-----~---~~I~lRinP~~~~~~~~~~~~~~~~skfG~ 145 (367)
+|+|+.+++|+.+++.....|+++|+.|++++.+.. ++. + .++||||||.+|....+++||+.++||+|+
T Consensus 81 vYsPay~e~d~~~I~~La~~i~FNS~~Q~~~yr~~~~~K~~qlenlG~~~~k~GLRINPeyS~v~~dLYNPc~~~SRLGv 160 (403)
T TIGR01047 81 VYSPAYKEEDLPEIIPLADHIIFNSLAQWARYREKVEDKNSQLENLGLREVKLGLRINPEYSEVETDLYNPCGKFSRLGV 160 (403)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCCCC
T ss_conf 71588886458889877413341037899999999999999888559750224123467446566132087868754664
Q ss_pred CHHHHHH----HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2788887----431496066530565666147899999999989865088750875337766644556807899999987
Q gi|254780741|r 146 KCKDKIE----SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEF 221 (367)
Q Consensus 146 ~~~~~~~----~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~ 221 (367)
+..++.+ .....|.|+|||..|.++|.+++.++|+.+.+.|.+|.++++|+|+|||+++|.++||++.+++.+|+|
T Consensus 161 ~a~~f~~Gvke~~l~gI~Gl~FH~~CEn~d~dAL~~~L~~~E~~FG~yL~~m~WVNfGGGH~~T~~GYDv~~LIa~~K~F 240 (403)
T TIGR01047 161 QAKEFEEGVKESLLDGIEGLHFHTLCENKDADALERTLEVIEKKFGEYLPQMEWVNFGGGHLITKKGYDVEKLIAVIKAF 240 (403)
T ss_pred CHHHHCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCCCCCHHHHHHHHHHH
T ss_conf 15776165221467754411000134456747899999999876421000323031388766457888889999998666
Q ss_pred HHHCC-CEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------
Q ss_conf 54216-5045300220145741888788786304-43334333356565664001345530002----------------
Q gi|254780741|r 222 SEKYS-VQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---------------- 283 (367)
Q Consensus 222 ~~~~~-~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---------------- 283 (367)
.++|. ++|++|||.||.=.+|.||++|+|+-+| +.+.++||+|+..||||.+.|+|++.+..
T Consensus 241 ~erh~~v~viLEPGeAigWqTG~Lv~sV~DiveNP~~~~AiLD~S~~AHmPD~LemPYrp~vl~A~~~~~~e~~e~~k~~ 320 (403)
T TIGR01047 241 KERHGNVQVILEPGEAIGWQTGFLVASVVDIVENPEKKIAILDVSFEAHMPDTLEMPYRPSVLGASVPADEELEEVEKDE 320 (403)
T ss_pred HHCCCCEEEEEECCCHHHHCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
T ss_conf 51178538997158212211177579999886489966863421200578641016887400225667711357762246
Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHH
Q ss_conf 47864599862333666455213566778879899996887022324347689988779999679909999738989998
Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYY 363 (367)
Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~ 363 (367)
++++..|.++|+||.+||++|.+.++.+|++||.|+|.|.=.|||+-.+.|||.++|.+.+++.+|+++++|.++|+||-
T Consensus 321 ~~g~~~Y~lGG~tCLAGD~~G~y~Fd~pLkvGdk~vf~D~~HYTmVK~t~FNGv~~P~~~~L~~~G~~~~~~~FgYEDyk 400 (403)
T TIGR01047 321 KEGEFSYVLGGSTCLAGDVMGEYAFDEPLKVGDKLVFLDMIHYTMVKTTTFNGVKLPSIGCLRAKGEFQLIKTFGYEDYK 400 (403)
T ss_pred CCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHCCCCCEEEHHHCCCHHHH
T ss_conf 77851478057841001511002568877634647884278754512262788447334431037876762007755640
Q ss_pred HHC
Q ss_conf 742
Q gi|254780741|r 364 NNL 366 (367)
Q Consensus 364 ~~~ 366 (367)
+|+
T Consensus 401 ~rl 403 (403)
T TIGR01047 401 NRL 403 (403)
T ss_pred CCC
T ss_conf 259
No 16
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=0 Score=526.12 Aligned_cols=331 Identities=18% Similarity=0.205 Sum_probs=253.6
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-
Q ss_conf 88568977999999999999985336--986999541059999999998518748980799998987-36880108853-
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNA--GVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN- 78 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~--~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~- 78 (367)
+||+||||+++|++|+++++.++... +++++||+|||+++.||++|++.|+|+||+|++|+++|+ +|+++++|+|+
T Consensus 9 GTP~yVyd~~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~g~Dv~S~gEl~~al~aG~~~~~Iv~~g 88 (423)
T cd06842 9 GSPLNVLFPQTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGVDVASLAELRQALAAGVRGDRIVATG 88 (423)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECC
T ss_conf 99979976999999999999998755998269998610689999999998499289869999999998599879989738
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC---CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 777803478861388689856720599999986123---4561489963577443101245578643574278888743-
Q gi|254780741|r 79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKL---HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE- 154 (367)
Q Consensus 79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~---~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~- 154 (367)
|.|+++||+.|++.+..||+||++||++|.+++++. ..+|+|||||. ++.+.||||++.+++.+..
T Consensus 89 ~~Ks~~ei~~Ai~~gv~i~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~----------~~~~~sKFGi~~~~~~~~l~ 158 (423)
T cd06842 89 PAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSPF----------PASLPSRFGMPAAEVRTALE 158 (423)
T ss_pred CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCC----------CCCCCCCCCCCHHHHHHHHH
T ss_conf 98998999999985998997899999999999876079962799986789----------99999999899999999999
Q ss_pred -------HCCCEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC--CH-----------
Q ss_conf -------149606653056566614--78999999999898650887508753377666445568--07-----------
Q gi|254780741|r 155 -------IKNVNGLMFHNNCENKSF--LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYP--VK----------- 212 (367)
Q Consensus 155 -------~~~i~Gih~H~gs~~~~~--~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~--~~----------- 212 (367)
..++.|||||+||+.... ..++++++.+ +.+.+.+.++++|||||||+++|.+.+ ++
T Consensus 159 ~~~~~~~~l~~~GlH~HiGs~~~~~~~~a~~~~~~~~-~~~~~~g~~l~~idiGGGfgv~Y~~~~~~~~~~~~~~~~~~~ 237 (423)
T cd06842 159 RLAQLRERVRLVGFHFHLDGYSAAQRVAALQECLPLI-DRARALGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALY 237 (423)
T ss_pred HHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9996399983689888648877278999999999999-999952999778971899776776631023443333101110
Q ss_pred -------------------------------HHHHH-----------HHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEE
Q ss_conf -------------------------------89999-----------998754216504530022014574188878878
Q gi|254780741|r 213 -------------------------------DFCQR-----------LKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLD 250 (367)
Q Consensus 213 -------------------------------~~~~~-----------i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~ 250 (367)
++.+. +++.....+++|++||||+||++||++||+|.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~iEPGR~lva~aG~llt~V~~ 317 (423)
T cd06842 238 GYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLPQGRTIAERLRDNGITLALEPGRALLDQCGLTVARVAF 317 (423)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEEEEEEE
T ss_conf 23543211122334566533343456752778999987412222245777642568559976655652255249999999
Q ss_pred EECC-CCCC-CCCCCCCCCCCCCCC-CCCCCCC------CCCCCCCEEEEEECCCCCCCCEEEEC-CCCCC-CCCCCEEE
Q ss_conf 6304-4333-433335656566400-1345530------00247864599862333666455213-56677-88798999
Q gi|254780741|r 251 ISEN-IKNL-VIVDSSVEAHVPDYL-LYQESAT------IYPNTGPYTAMVCGRSCLAGDIFGEF-HFEKP-VKIGDRIS 319 (367)
Q Consensus 251 ~K~~-~~~~-v~vd~g~~~~~~~~~-~~~~~~~------~~~~~~~~~~~v~G~~C~~~D~l~~~-~~~~~-l~~GD~l~ 319 (367)
+|++ +.++ +.+|+++. .+++.. .+...+. ........++.|+||+|+++|+|++. ..+|+ +++||+|+
T Consensus 318 vK~~~~~~~~v~~~g~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~~~~~lP~~~~~GD~l~ 396 (423)
T cd06842 318 VKQLGDGNHLIGLEGNSF-SACEFSSEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITRRKIPFPRLPKPGDLLV 396 (423)
T ss_pred EEECCCCCEEEEECCCCC-CCCHHHCHHCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf 976599858999668875-4101211000474574367777788853899998166798158605566756799999999
Q ss_pred EECCCCHHH-HHCCCCCCCCCCEEEEE
Q ss_conf 968870223-24347689988779999
Q gi|254780741|r 320 FEDVAGYNI-NRKNWFNGINMPTIAVK 345 (367)
Q Consensus 320 i~~~GAY~~-~~~~~Fn~~~~P~~v~~ 345 (367)
|.++|||+| +|+|+||++|+|++|++
T Consensus 397 i~~~GAY~~~~~as~fN~~P~P~~V~V 423 (423)
T cd06842 397 FPNTAGYQMDFLESRFHRHPLPRRVVV 423 (423)
T ss_pred ECCCCCCCCCCCHHHCCCCCCCCEEEC
T ss_conf 938630268422123049999988769
No 17
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=0 Score=522.03 Aligned_cols=342 Identities=16% Similarity=0.159 Sum_probs=271.9
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHC--------CCEEEEEEECCCCHHHHHHHHHHCC----EEEEECHHHHHHHH-CC
Q ss_conf 88568977999999999999985336--------9869995410599999999985187----48980799998987-36
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNA--------GVKLLLALKCFAAWGMFDTLNQYMD----GTTSSSLYEVMLGH-EK 69 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~--------~~~i~yA~KaN~~~~il~~l~~~g~----g~dv~S~~E~~la~-~g 69 (367)
+||+||||++.||+|+++++.+|... +++++||+|||+++.|++.+.++|. |+||+|.+|+.+|+ +|
T Consensus 4 GTPLyV~d~~~ir~~~~~~~~aF~~~~~~~~y~~~~~~~YAvKAN~n~~vl~~l~~~G~~~~~G~DvvS~gEl~~al~ag 83 (409)
T cd06830 4 GLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALALL 83 (409)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHCC
T ss_conf 99799970999999999999999999997287876289998720680999999997397558836896899999999769
Q ss_pred CCCCCEEE-CCCCCHHHHHHHHCCC-----CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 88010885-3777803478861388-----68985672059999998612345--6148996357744310124557864
Q gi|254780741|r 70 FGGETHAY-NVAYKDCEIDAVLSNC-----DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFS 141 (367)
Q Consensus 70 ~~~~~i~~-~~~~~~~el~~a~~~~-----~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~s 141 (367)
+++++++| |+.|++++|+.|+..+ .+|++||++||++|.+++++.+. +|+|||||++.+.++ ...+++..|
T Consensus 84 ~~p~~ii~~~~~K~~~~i~~a~~~~~~~~~v~iviDs~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~-~~~t~g~~s 162 (409)
T cd06830 84 KTPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGK-WQESGGDRS 162 (409)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCCCCCCCC
T ss_conf 9999699949989999999999847567653664599999999999999709995078998536688876-411378631
Q ss_pred CCCCCHHHHHHHH-------H-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCC--
Q ss_conf 3574278888743-------1-4960665305656661478999999999898---6508875087533776664455--
Q gi|254780741|r 142 RLGEKCKDKIESE-------I-KNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKD-- 208 (367)
Q Consensus 142 kfG~~~~~~~~~~-------~-~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~-- 208 (367)
|||++.+++.+.. . ..+.|||||+|||+.+.+.|.++++.+.+++ .+.+..+++||+||||+++|.+
T Consensus 163 KFGi~~~~~~~~~~~~~~~~~~~~l~glH~HIGSQi~d~~~~~~a~~~~~~~~~~l~~~g~~l~~ldlGGGfgi~Y~~~~ 242 (409)
T cd06830 163 KFGLTASEILEVVEKLKEAGMLDRLKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDYDGSR 242 (409)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 35999999999999998579977556899852789888899999999999999999984899526750675554568767
Q ss_pred --------CCCHHHHHHH----HHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------6807899999----98754216---50453002201457418887887863044333433335656566400
Q gi|254780741|r 209 --------YPVKDFCQRL----KEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYL 273 (367)
Q Consensus 209 --------~~~~~~~~~i----~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~ 273 (367)
++++++++.+ ++.+++++ ++||+||||||||+||++|++|..+|+..+++.+.++.++.+.++++
T Consensus 243 ~~~~~~~~~dl~~~a~~i~~~~~~~~~~~~~~~p~li~EPGR~iVa~AGvll~~V~~vK~~~~~~~i~~~~~~~l~d~~~ 322 (409)
T cd06830 243 SSSDSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLADWYFCNFSLFQSLPDSWA 322 (409)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHEEEEEEEEEEEEEEEEECCCEEEEECCCCCCCCCHHH
T ss_conf 78765410229999999999999999972999975998147321010028999989997515268750323355655345
Q ss_pred CCCCCCCCCC----CCCCEEEEEECCCCCCCCEEEEC---------CCCCCCCC--CCEEEEECCCCHHHHHCCCCCCCC
Q ss_conf 1345530002----47864599862333666455213---------56677887--989999688702232434768998
Q gi|254780741|r 274 LYQESATIYP----NTGPYTAMVCGRSCLAGDIFGEF---------HFEKPVKI--GDRISFEDVAGYNINRKNWFNGIN 338 (367)
Q Consensus 274 ~~~~~~~~~~----~~~~~~~~v~G~~C~~~D~l~~~---------~~~~~l~~--GD~l~i~~~GAY~~~~~~~Fn~~~ 338 (367)
+.++++.+.- .+....++|+|++|+|+|+++++ ..+|+++. ||+|+|.+||||+++|+||||+++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~v~G~~CES~d~~~~~~~~~~~~~~~~lp~~~~~egdlla~~~aGAYg~sMsSnYN~~g 402 (409)
T cd06830 323 IDQLFPIMPLHRLNEKPTRRAVLGDITCDSDGKIDSFIDPPDILPTLPLHPLRKDEPYYLGFFLVGAYQEILGDLHNLFG 402 (409)
T ss_pred HCCCCEEEECCCCCCCCCEEEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCC
T ss_conf 05655266535577887057899853601498032205664322346677667899878999336702478766656899
Q ss_pred CCEEEEE
Q ss_conf 8779999
Q gi|254780741|r 339 MPTIAVK 345 (367)
Q Consensus 339 ~P~~v~~ 345 (367)
+|++|.+
T Consensus 403 ~~~~v~v 409 (409)
T cd06830 403 DTNAVHV 409 (409)
T ss_pred CCCEEEC
T ss_conf 9887769
No 18
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=0 Score=516.30 Aligned_cols=335 Identities=16% Similarity=0.224 Sum_probs=269.1
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367)
+|||||||.+.|++|+++++++++ +++++||+||||++.||++|++.|+||||+|.+|+++|++ ||++++|+|+ |.
T Consensus 12 ~~~fyvyD~~~i~~~~~~~~~~lp--~v~~~YAvKaN~~~~il~~L~~~G~g~DvaS~gEl~~al~aG~~p~~Iif~gp~ 89 (394)
T cd06831 12 KNAFFVGDLGKIVKKHSQWQTVMA--QIKPFYTVRCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIYTNPC 89 (394)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 998799589999999999998689--985787862499899999999749988986999999999869987997977999
Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf 7803478861388-689856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------ 153 (367)
Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------ 153 (367)
|+++||+.|++.+ ..+++||++||++|.+.. ++.++.+||||....++ +...+|||++.+++.+.
T Consensus 90 Kt~~ei~~A~~~GV~~~~~Ds~~EL~ki~r~~--~~~~v~lri~~~~~~~~------~~~~~KFG~~~~~~~~ll~~~~~ 161 (394)
T cd06831 90 KQASQIKYAAKVGVNIMTCDNEIELKKIARNH--PNAKLLLHIATEDNIGG------EEMNMKFGTTLKNCRHLLECAKE 161 (394)
T ss_pred CCHHHHHHHHHCCCCEEECCCHHHHHHHHHHC--CCCCEEEEEECCCCCCC------CCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999998599778537689999999878--99960788734777777------75676545679999999999986
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHH---HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC-----
Q ss_conf 31496066530565666147899999999---9898650887508753377666445568078999999875421-----
Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNI---EKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----- 225 (367)
Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~---~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----- 225 (367)
...++.|||||+|||+.+.+.|.++++.+ .++..+++.++++|||||||+. .+.+.+++...++...+.+
T Consensus 162 ~~l~~~Glh~HvGSq~~~~~~~~~a~~~~~~v~dl~~~~g~~~~~lDiGGGf~~--~~~~~~~~~~~i~~~~~~~f~~~~ 239 (394)
T cd06831 162 LDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTG--SEIQLEEVNHVIRPLLDVYFPEGS 239 (394)
T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 498699985331577688499999999999999999971999748987899887--778979999999999998663468
Q ss_pred CCEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC--------CCCCCCCCC----------CCCC----CC
Q ss_conf 6504530022014574188878878630443334333356565--------664001345----------5300----02
Q gi|254780741|r 226 SVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAH--------VPDYLLYQE----------SATI----YP 283 (367)
Q Consensus 226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~--------~~~~~~~~~----------~~~~----~~ 283 (367)
++++++|||||+|++||.++++|+++|..+.+..+++++.+.. +++.++... .+.+ ..
T Consensus 240 ~~~li~EPGR~lva~ag~l~t~Vi~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~g~yg~~~~~~~~~~~~~~~~~~~~~~ 319 (394)
T cd06831 240 GIQIIAEPGSYYVSSAFTLAVNVIAKKAVENDKHLSSVEKNGSDEPAFVYYMNDGVYGSFASKLSEKLNTTPEVHKKYKE 319 (394)
T ss_pred CCEEEECCCCEEEECCEEEEEEEEEEEEECCCEEEEECCCCCCCCHHHEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 97799507967865225899999988851462377632334666500114654000004667665323567332345567
Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 478645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG 349 (367)
Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g 349 (367)
++...+++|+||+|+++|+|+++..+|++++||+|+|.++|||+++|+|+||++|+|+++++....
T Consensus 320 ~~~~~~~tv~Gp~C~s~Dvl~~~~~LP~l~~GD~L~i~~~GAY~~sm~s~fNg~~rPav~~~~~~~ 385 (394)
T cd06831 320 DEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGAGSLHEPSTFNDFQRPAIYYMMSFS 385 (394)
T ss_pred CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEECHH
T ss_conf 897578588963867756989366889999999999848987840105788898998289997788
No 19
>KOG0622 consensus
Probab=100.00 E-value=0 Score=432.04 Aligned_cols=348 Identities=20% Similarity=0.275 Sum_probs=282.2
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEE-CCC
Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-3688010885-377
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAY-NVA 80 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~-~~~ 80 (367)
..||||+|...|.++..+++..+ |.++.+||||||+.|.|++.|++.|+||+|+|..|++++. .|++|++|+| ||-
T Consensus 55 ~~aFfv~Dl~~I~Rkl~~w~~~L--prV~PfYAVKCN~dp~vl~~La~lG~gfdcaSk~E~~lvl~~gv~P~riIyanpc 132 (448)
T KOG0622 55 KQAFFVADLGAIERKLEAWKKAL--PRVRPFYAVKCNSDPKVLRLLASLGCGFDCASKNELDLVLSLGVSPERIIYANPC 132 (448)
T ss_pred CCCEEEECHHHHHHHHHHHHHHC--CCCCCCEEEEECCCHHHHHHHHHCCCCCEECCHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 57337841899999999999865--4678761687379779999999708660103717999998669885666862787
Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH---H---HH
Q ss_conf 7803478861388-689856720599999986123456148996357744310124557864357427888---8---74
Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK---I---ES 153 (367)
Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~---~---~~ 153 (367)
|.-+.|+.|.+.| ...++||..||.++... .++.++.|||+++.+. .++....|||.+.++. + +.
T Consensus 133 K~~s~IkyAa~~gV~~~tfDne~el~kv~~~--hP~a~llLrIatdds~------a~~~l~~KFG~~~~~~~~lLd~ak~ 204 (448)
T KOG0622 133 KQVSQIKYAAKHGVSVMTFDNEEELEKVAKS--HPNANLLLRIATDDST------ATCRLNLKFGCSLDNCRHLLDMAKE 204 (448)
T ss_pred CCHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEECCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 5199999999759707862589999999974--9973389997368874------5555667568777899999999987
Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHC----
Q ss_conf 314960665305656661478999999999898---650887508753377666445-568078999999875421----
Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEKY---- 225 (367)
Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~~---- 225 (367)
...++.|+|||+||++.+++.|.+++..+..++ +++|..+.++||||||+..+. ...++++++.|+...+.|
T Consensus 205 l~lnvvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~~In~ald~~Fp~~ 284 (448)
T KOG0622 205 LELNVVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIADVINTALDLYFPSG 284 (448)
T ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 18658889987258878789999999999999999986186278861378888752301202638988889999747877
Q ss_pred CCEEEEEHHHHCCCCCEEEEEEEEEEECCCC--------------CCCCCCC---CCCCCCCCCCCCCCCCCCCC----C
Q ss_conf 6504530022014574188878878630443--------------3343333---56565664001345530002----4
Q gi|254780741|r 226 SVQIYLEPGEAIVTNTTTLNTTVLDISENIK--------------NLVIVDS---SVEAHVPDYLLYQESATIYP----N 284 (367)
Q Consensus 226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~--------------~~v~vd~---g~~~~~~~~~~~~~~~~~~~----~ 284 (367)
+++++.|||||+|+++.+|++.|+..|+.+. .|.+.|| ++|+...+. +++.+.... +
T Consensus 285 ~v~iiaEpGRf~VasafTLa~nViakk~v~~~~~~~d~~d~~~~~mYy~nDGVYGsfnciL~D~--~~~i~~~~~~~~e~ 362 (448)
T KOG0622 285 GVDIIAEPGRFFVASAFTLAVNVIAKKEVDAKKITSDDEDDEVTFMYYVNDGVYGSFNCILFDH--QHPIPLVVKDPSEE 362 (448)
T ss_pred CCEEEECCCHHEEECHHEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEECHHHHCC--CCCCCCCCCCCCCC
T ss_conf 8238843752103020023455554222130014766334673179997363336612202134--47665456797223
Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE-CCHHHH
Q ss_conf 786459986233366645521356677887989999688702232434768998877999967990999973-898999
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE-FSYNDY 362 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~-e~~~d~ 362 (367)
++..+..||||+|++.|++.++..+|.+.+||||+|+|+||||++++|.||++++|.++....++.++.+|+ ++++|-
T Consensus 363 e~~~~ssIwGPtcD~lD~i~~~~~lp~l~vGdwLvf~~mGAYT~~~aS~fNgf~~p~~~y~~s~~~~e~~r~~~~~~~~ 441 (448)
T KOG0622 363 EPLYKSSIWGPTCDGLDVIAEDCLLPQLNVGDWLVFENMGAYTMSAASTFNGFQRPKIYYVMSDGDWEKIRDAETFDDE 441 (448)
T ss_pred CCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCHH
T ss_conf 6614530136776417788764148978746757785677600235543578888845898502428876265579815
No 20
>pfam02784 Orn_Arg_deC_N Pyridoxal-dependent decarboxylase, pyridoxal binding domain. These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold.
Probab=100.00 E-value=0 Score=338.38 Aligned_cols=227 Identities=17% Similarity=0.195 Sum_probs=191.9
Q ss_pred EHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CCCCHHHHH
Q ss_conf 7999999999999985336986999541059999999998518748980799998987-36880108853-777803478
Q gi|254780741|r 10 DKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VAYKDCEID 87 (367)
Q Consensus 10 d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~~~~~el~ 87 (367)
|++.|+++++.+.+++ .++++++||+||||++.||+++.+.|+|+||+|.+|+++|+ .|+++++|+|+ |.|+++|++
T Consensus 1 D~~~i~~~~~~~~~~~-~p~~~~~YAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~g~~~~~I~~~g~~k~~~~i~ 79 (245)
T pfam02784 1 DLGRIIERAHALWQAF-LPRIQPFYAVKANSDPAVLRLLAELGLGFDCASKGELERVLAAGVPPERIIFANPCKSRSELR 79 (245)
T ss_pred CHHHHHHHHHHHHHHH-CCCCEEEEEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEEECCCCCHHHHH
T ss_conf 9689999999999984-899779988501888999999998299299989999999998698957889814435468999
Q ss_pred HHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH------HCCCEE
Q ss_conf 861388-6898567205999999861234561489963577443101245578643574278888743------149606
Q gi|254780741|r 88 AVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE------IKNVNG 160 (367)
Q Consensus 88 ~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~------~~~i~G 160 (367)
.+++.+ .+|++||++||+++.+++++ .+|++||||++..+.+....+|. .||||++.+++.+.. ..++.|
T Consensus 80 ~a~~~gv~~i~vDs~~el~~i~~~~~~--~~i~lRvnp~~~~~~~~~~~~g~-~sKFGi~~~~~~~~~~~~~~~~~~~~G 156 (245)
T pfam02784 80 YALEHGVVCVTVDNVEELEKLARLAPE--ARLLLRVKPDVDAHAHCYLSTGQ-DSKFGADLEEAEALLKAAKELGLNVVG 156 (245)
T ss_pred HHHHHCCCCEEECCHHHHHHHHHHCCC--CCEEEEEEECCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 999827761442799999999985753--77899994067766554444688-777689999999999999867997547
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHC-----CCEEEE
Q ss_conf 653056566614789999999998986---50887508753377666445-568078999999875421-----650453
Q gi|254780741|r 161 LMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEKY-----SVQIYL 231 (367)
Q Consensus 161 ih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~l~i 231 (367)
||||+|||+.+.+.|.+.++.+.++++ +.+.++++|||||||+++|. +.+++++++.+++..+++ +++||+
T Consensus 157 lH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~Y~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 236 (245)
T pfam02784 157 VHFHVGSGCTDAEAFVKAARDARNVFDQGAELGFELKILDLGGGFGVDYTGAEDFEEYAEVINAALEEVFPHDPHPTIIA 236 (245)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 55653657899899999999999999999980998319985899588889999989999999999999845599808999
Q ss_pred EHHHHCCCC
Q ss_conf 002201457
Q gi|254780741|r 232 EPGEAIVTN 240 (367)
Q Consensus 232 EPGR~lv~~ 240 (367)
||||||||+
T Consensus 237 EPGR~lvap 245 (245)
T pfam02784 237 EPGRYIVAP 245 (245)
T ss_pred ECCCCCCCC
T ss_conf 578000286
No 21
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=1.1e-35 Score=254.88 Aligned_cols=364 Identities=16% Similarity=0.176 Sum_probs=262.2
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH----C----CCEEEEEEECCCCHHHHHHHHHHC----CEEEEECHHHHHHHHCC
Q ss_conf 88856897799999999999998533----6----986999541059999999998518----74898079999898736
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN----A----GVKLLLALKCFAAWGMFDTLNQYM----DGTTSSSLYEVMLGHEK 69 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~----~----~~~i~yA~KaN~~~~il~~l~~~g----~g~dv~S~~E~~la~~g 69 (367)
+++|+.+-..+.|+++++++..+|.. . .++-.|++|.|....|++.+.+.| .|.|++|..|+.++++-
T Consensus 62 ~~~P~llRF~dIL~~ri~~l~~aF~~Ai~e~~Y~g~y~gVyPIKVNQ~r~VVeeI~~~G~~~~~GLEAGSKpEL~a~la~ 141 (634)
T PRK05354 62 LRLPLLLRFPDILQDRVRSLNAAFKKAIEEYGYQGDYQGVYPIKVNQQRHVVEEIVASGKPYNLGLEAGSKPELMAVLAL 141 (634)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCEEECCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99977996469999999999999999999829888663042234365289999999727656555535868999999862
Q ss_pred C--CCCCEEECCCCCHHHHHHHH---CC--CCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 8--80108853777803478861---38--868985672059999998612345--614899635774431012455786
Q gi|254780741|r 70 F--GGETHAYNVAYKDCEIDAVL---SN--CDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPF 140 (367)
Q Consensus 70 ~--~~~~i~~~~~~~~~el~~a~---~~--~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~ 140 (367)
. +...|+.||-|.++-++.|+ +. ...|+++.++||+.+.+.+++.+. .||+|+... +.+...+.++|+..
T Consensus 142 ~~~~~aliiCNGyKD~eyI~LAl~a~klG~~v~iViEk~~EL~~il~~a~~l~v~P~iGvR~kL~-s~gsGkW~~SgGd~ 220 (634)
T PRK05354 142 ANDPGSLIVCNGYKDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRARLA-SQGSGKWQSSGGEK 220 (634)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCCCCCCCCCCC
T ss_conf 37999559956827699999999999769966999746899999999999749998505799862-56576106778741
Q ss_pred CCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH---CCCCCEEEEECCCCCCCCC--
Q ss_conf 43574278888743--------1496066530565666147899999999989865---0887508753377666445--
Q gi|254780741|r 141 SRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH---FITQIEWISLGGGIHFTDK-- 207 (367)
Q Consensus 141 skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~---~~~~l~~idiGGG~~~~~~-- 207 (367)
||||.+..++.+.. ...++-+|||+|||+.+....++++..+.+++.+ .|..++++|+|||+++.|.
T Consensus 221 sKFGLs~~eil~~v~~Lk~~~~ld~L~LLHfHiGSQI~~I~~ik~av~Ea~r~Y~eL~~~Ga~i~ylDvGGGLgVDYdGs 300 (634)
T PRK05354 221 SKFGLSATEILEAVERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARIYVELRKLGAPIKYLDVGGGLGVDYDGT 300 (634)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 21588899999999998865845324331132455553499999999999999999997589851785158626676776
Q ss_pred --------CCCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCC----------CC--
Q ss_conf --------568078999----9998754216---50453002201457418887887863044333----------43--
Q gi|254780741|r 208 --------DYPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIKNL----------VI-- 260 (367)
Q Consensus 208 --------~~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~----------v~-- 260 (367)
+|.+++||+ .+++.+++.+ +.|+.|.||+++|.+.+||+.|+++....... ++
T Consensus 301 ~s~~~~S~NYsl~EYa~dVV~~v~~~c~~~~vphP~IvtESGRAi~AhhsvLv~~Vl~~~~~~~~~~~~~~~~~~~ll~~ 380 (634)
T PRK05354 301 RSQSDSSVNYSLQEYANDVVYTLKEICEEKGVPHPTIISESGRAITAHHAVLVFNVLGVERVEYEEPPAPAEDAPPLLQN 380 (634)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 65886676769999899999999999997599999178535610102445899861134568877889898776799999
Q ss_pred -------C----------CC-------------CCCC-------------------------------------------
Q ss_conf -------3----------33-------------5656-------------------------------------------
Q gi|254780741|r 261 -------V----------DS-------------SVEA------------------------------------------- 267 (367)
Q Consensus 261 -------v----------d~-------------g~~~------------------------------------------- 267 (367)
+ |+ |.-.
T Consensus 381 l~~~~~~~~~~~~~E~y~Da~~~~~e~~~~F~~G~lsL~~RA~aE~l~~~i~~~i~~~~~~~~~~~~el~~L~~~Lad~Y 460 (634)
T PRK05354 381 LWETLQEIDRRNLQEIYHDAQQDLEEALSLFALGYLSLQERAWAEQLYWAICREIQKLLDPKNAHRPELDELQERLADKY 460 (634)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHE
T ss_conf 99999853778899999999999999999984788579999999999999999999975236789689999999876555
Q ss_pred --------CCCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCE---EEE------CCCCCCCCCCC--EEEEECC
Q ss_conf --------5664001-3455300----024786459986233366645---521------35667788798--9999688
Q gi|254780741|r 268 --------HVPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDI---FGE------FHFEKPVKIGD--RISFEDV 323 (367)
Q Consensus 268 --------~~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~---l~~------~~~~~~l~~GD--~l~i~~~ 323 (367)
-+|+.|- .+..|++ ...++.....++--||+|.-. +.. ...+++++.|. +|.|.-+
T Consensus 461 ~~NFSvFQSlPD~WaIdQlFPImPihRL~E~Ptr~a~l~DiTCDSDGkI~~fi~~~~v~~tLpLH~~~~~e~YylG~FLv 540 (634)
T PRK05354 461 YVNFSLFQSLPDAWAIDQLFPVMPLHRLDEEPTRRAVLADITCDSDGKIDQFIDGQGIKTTLPLHPLDPGEPYYLGFFLV 540 (634)
T ss_pred EEEEHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEH
T ss_conf 87325751473077752666422330258887754488620547888653300788874675699999999767987630
Q ss_pred CCHHHHHCCCCCCCCCC--EEEEEECCCCEEEEE---ECCHHHHHHHC
Q ss_conf 70223243476899887--799996799099997---38989998742
Q gi|254780741|r 324 AGYNINRKNWFNGINMP--TIAVKNVDGTIKAIR---EFSYNDYYNNL 366 (367)
Q Consensus 324 GAY~~~~~~~Fn~~~~P--~~v~~~~~g~~~~~r---~e~~~d~~~~~ 366 (367)
|||+-.|+..-|-+-.+ ..|.++++|.+.+.+ ..|.+|.++-+
T Consensus 541 GAYQEiLGdlHNLFGdt~~v~V~~~~~g~~~i~~~i~Gdtv~dVL~yv 588 (634)
T PRK05354 541 GAYQEILGDMHNLFGDTNAVHVRVDEDGGYEIEHVIEGDTVADVLEYV 588 (634)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHC
T ss_conf 076887600143079987799998699988998750688599999873
No 22
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-31 Score=226.54 Aligned_cols=362 Identities=17% Similarity=0.163 Sum_probs=256.9
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH-------C-CCEEEEEEECCCCHHHHHHHHHHC----CEEEEECHHHHHHHHC-
Q ss_conf 88856897799999999999998533-------6-986999541059999999998518----7489807999989873-
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN-------A-GVKLLLALKCFAAWGMFDTLNQYM----DGTTSSSLYEVMLGHE- 68 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~-------~-~~~i~yA~KaN~~~~il~~l~~~g----~g~dv~S~~E~~la~~- 68 (367)
++-|+.+-..+.|.++++.+..+|+. + +++..|++|.|..+.+++.|...| .|.|++|..|+..+++
T Consensus 78 ~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~ 157 (652)
T COG1166 78 LRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAH 157 (652)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 89856985269999999999999999999808898605898766554188999998636898776667887999999983
Q ss_pred -CCCCCCEEECCCCCHHHHHHHH-----CCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf -6880108853777803478861-----38868985672059999998612345--614899635774431012455786
Q gi|254780741|r 69 -KFGGETHAYNVAYKDCEIDAVL-----SNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPF 140 (367)
Q Consensus 69 -g~~~~~i~~~~~~~~~el~~a~-----~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~ 140 (367)
+-+...|+.|+=|..+-++.|+ .+...|+|+-++||+.+.+.|+..+. ++|+|+--. +.+...+.++|+..
T Consensus 158 ~~~~~~~IvCNGyKDrEyI~lAlig~kLGh~v~ivIEklsEl~~Vl~eA~~lgvkP~lGvR~RL~-sqGsGkW~~SgG~k 236 (652)
T COG1166 158 AGNPGSLIVCNGYKDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLA-SQGSGKWQSSGGEK 236 (652)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEE-CCCCCCCCCCCCCH
T ss_conf 38999717845746099999999999827954999922679999999999739997633688862-35567500046831
Q ss_pred CCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCC--
Q ss_conf 43574278888743--------149606653056566614789999999998986---50887508753377666445--
Q gi|254780741|r 141 SRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDK-- 207 (367)
Q Consensus 141 skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~-- 207 (367)
||||.+..+++... +..++-+|||.|||+.+...+++.+..+.+.+. ++|-.++++|+|||+++.|+
T Consensus 237 sKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klGa~i~~~dVGGGLgVDYdGt 316 (652)
T COG1166 237 SKFGLSATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLGANIKYFDVGGGLGVDYDGT 316 (652)
T ss_pred HCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCC
T ss_conf 01488889999999998762657766787641000134569999999999999999998278860785168443321676
Q ss_pred --------CCCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCC--CCCCCCC-------
Q ss_conf --------568078999----9998754216---504530022014574188878878630443--3343333-------
Q gi|254780741|r 208 --------DYPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIK--NLVIVDS------- 263 (367)
Q Consensus 208 --------~~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~--~~v~vd~------- 263 (367)
+|.+.+|++ .++++++.++ +.|++|.||+|.|...+|++.|+++-.... .=...+.
T Consensus 317 ~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~P~IisESGRaitAHhaVLI~~Vi~v~~~~~~~~p~~~~~~~~~~l~ 396 (652)
T COG1166 317 RTQSDCSKNYGLNEYANDVVWALKDACEEKGLPHPTIISESGRAITAHHAVLIANVIGVERHEYNDAPLPDAPRNLPPLW 396 (652)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 44663233678899998999999999984599998078104423220422898630002457877788888843245899
Q ss_pred --------CCC-----------------------C----C----------------------------------------
Q ss_conf --------565-----------------------6----5----------------------------------------
Q gi|254780741|r 264 --------SVE-----------------------A----H---------------------------------------- 268 (367)
Q Consensus 264 --------g~~-----------------------~----~---------------------------------------- 268 (367)
+.+ . +
T Consensus 397 ~~~~e~~~~i~~r~~~E~~hds~~~~~~~~~~f~~G~l~L~~Ra~aEqL~~aic~ki~~~~~~~~~~~r~~ldeLqe~la 476 (652)
T COG1166 397 RTLQELYESITARNLREWYHDSQDDLEDAHSLFNLGYLSLQERAWAEQLYLAICHKVQQLLRQKNRSHRPILDELQERLA 476 (652)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999863457788999998767679999987503532288888799999999999999854530687678999999976
Q ss_pred ------------CCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCEE---EE------CCCCCCCCCC--CEEEE
Q ss_conf ------------664001-3455300----0247864599862333666455---21------3566778879--89999
Q gi|254780741|r 269 ------------VPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDIF---GE------FHFEKPVKIG--DRISF 320 (367)
Q Consensus 269 ------------~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~l---~~------~~~~~~l~~G--D~l~i 320 (367)
+|+.|- .+-.|++ ...+......++--||+|--.+ .+ ..++++.++| =+|.|
T Consensus 477 dky~vNfSlFQSlPD~W~IdQlFPI~Pl~rLdE~PtRravL~DiTCDSDG~Id~yid~~~i~s~Lplh~~~~~epy~lGf 556 (652)
T COG1166 477 DKYYVNFSLFQSLPDAWGIDQLFPILPLHRLDEEPTRRAVLLDITCDSDGKIDHYIDGDGIKSTLPLHEYDPGEPYLLGF 556 (652)
T ss_pred HHHEEEEHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 67477205750584121002356623022358875511378865307988600231376654544478889998756652
Q ss_pred ECCCCHHHHHCCCCC--CCCCCEEEEEECCCCEEE--E-EECCHHHHHH
Q ss_conf 688702232434768--998877999967990999--9-7389899987
Q gi|254780741|r 321 EDVAGYNINRKNWFN--GINMPTIAVKNVDGTIKA--I-REFSYNDYYN 364 (367)
Q Consensus 321 ~~~GAY~~~~~~~Fn--~~~~P~~v~~~~~g~~~~--~-r~e~~~d~~~ 364 (367)
.-+|||+..|++--| |.+-...|.++.+|+.++ + +..|..|.+.
T Consensus 557 FLVGAYQEILG~~HNLFGdt~~v~V~v~~~G~y~ie~~~egdTi~dmL~ 605 (652)
T COG1166 557 FLVGAYQEILGNMHNLFGDTTAVHVVVDPKGSYEIEDIVEGDTVADMLE 605 (652)
T ss_pred EHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHH
T ss_conf 1275799997666650589845899987998679986523560999998
No 23
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=100.00 E-value=7.7e-33 Score=236.01 Aligned_cols=196 Identities=19% Similarity=0.219 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CCCCHHHHHHHHC
Q ss_conf 999999999985336986999541059999999998518748980799998987-36880108853-7778034788613
Q gi|254780741|r 14 LLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VAYKDCEIDAVLS 91 (367)
Q Consensus 14 i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~~~~~el~~a~~ 91 (367)
||+|++++++.++ ++++++||+|||+++.+++++.+.|+|+||+|++|+..++ +|+++++|+|+ |.+++++++.+++
T Consensus 1 ir~N~~~lk~~l~-~~~~i~~avKAn~~~~v~~~l~~~g~g~~vas~~E~~~~~~~G~~~~~Il~~g~~~~~~~~~~a~~ 79 (211)
T cd06808 1 IRHNYRRLREAAP-AGITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAE 79 (211)
T ss_pred CHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9799999998689-998899998308829999999973890789609999999975997556101566476689999999
Q ss_pred CCC-EEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHCCCEEE
Q ss_conf 886-898567205999999861234--56148996357744310124557864357427888874-------31496066
Q gi|254780741|r 92 NCD-TIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EIKNVNGL 161 (367)
Q Consensus 92 ~~~-~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~~~i~Gi 161 (367)
.+. .+++||.+|++++.+.+.+.+ .+|.|||||+. ..||||++.+++.+. ...++.|+
T Consensus 80 ~~~~~~~vds~~~l~~l~~~a~~~~~~~~v~lrintg~------------~~~rfG~~~~e~~~~~~~~~~~~~l~l~Gi 147 (211)
T cd06808 80 QGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTGD------------ENGKFGVRPEELKALLERAKELPHLRLVGL 147 (211)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCC------------CCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 61224010677888778998885388851477672277------------767778899999999999996898666114
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHH
Q ss_conf 530565666147899999999989---86508875087533776664455680789999998754216504530022
Q gi|254780741|r 162 MFHNNCENKSFLCFSAMLKNIEKE---FGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGE 235 (367)
Q Consensus 162 h~H~gs~~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR 235 (367)
|+|.||+..+...+.+.++.+.+. +.+.+.+++++|+||||+++|..... .....|+||||
T Consensus 148 ~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~iGgg~gv~y~~e~p-------------~~~~~~vrpG~ 211 (211)
T cd06808 148 HTHFGSADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYLQELP-------------LGTFIIVEPGR 211 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC-------------HHHEEEECCCC
T ss_conf 66543443898999999999999999999759697989969982437898898-------------26704634799
No 24
>pfam00278 Orn_DAP_Arg_deC Pyridoxal-dependent decarboxylase, C-terminal sheet domain. These pyridoxal-dependent decarboxylases act on ornithine, lysine, arginine and related substrates.
Probab=99.88 E-value=1.2e-22 Score=168.74 Aligned_cols=103 Identities=23% Similarity=0.329 Sum_probs=89.1
Q ss_pred EEEEEEEEEECC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEEECCCCCCCCEEEECCCCC-CCCCC
Q ss_conf 888788786304-4-333433335656566400134553000----2478645998623336664552135667-78879
Q gi|254780741|r 243 TLNTTVLDISEN-I-KNLVIVDSSVEAHVPDYLLYQESATIY----PNTGPYTAMVCGRSCLAGDIFGEFHFEK-PVKIG 315 (367)
Q Consensus 243 ~lv~~V~~~K~~-~-~~~v~vd~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~G~~C~~~D~l~~~~~~~-~l~~G 315 (367)
+|+|+|+++|++ + +.|+++|+|++++++++++.+.++... .+....+++|+||+|+++|+|.++..+| ++++|
T Consensus 1 ~Lvt~V~~~k~~~~~~~~~~ld~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gp~C~s~D~l~~~~~lP~~l~~G 80 (110)
T pfam00278 1 TLVTEVIDVKERGDDRKFVYLDDGVYGSPDPALYDALHPILPVSRLDDEPLRPYTLAGPTCDSGDVLARDVSLPLELEVG 80 (110)
T ss_pred CCEEEEEEEECCCCCCEEEEECCCHHCCCCHHHHCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCC
T ss_conf 95799999953899516999888531141147648634428701678887357999741567687982233077233789
Q ss_pred CEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 899996887022324347689988779999
Q gi|254780741|r 316 DRISFEDVAGYNINRKNWFNGINMPTIAVK 345 (367)
Q Consensus 316 D~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~ 345 (367)
|+|+|.++|||+++|+++||++++|+++++
T Consensus 81 D~l~~~~~GAY~~~~ss~fNg~~~p~~v~v 110 (110)
T pfam00278 81 DWLVFFDAGAYTISLSSNFNGFPRPAEVLV 110 (110)
T ss_pred CEEEECCCCCCCCHHCCCCCCCCCCCEEEC
T ss_conf 999988886233100266679898879979
No 25
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.74 E-value=2.5e-14 Score=114.06 Aligned_cols=318 Identities=16% Similarity=0.072 Sum_probs=184.9
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHH-HHCCCCCCCEEECC
Q ss_conf 8885689779999999999999853369869995410599999999985187-489807999989-87368801088537
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVML-GHEKFGGETHAYNV 79 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~l-a~~g~~~~~i~~~~ 79 (367)
|+||+.|+|.+.+++|+++++......++++.==+|+--.+.+.+..-+.|. |+-|+.+.|++. +..|+. +.++.++
T Consensus 1 ~~TPaLvvD~~~le~Ni~~M~~~~~~~gv~lRPH~KTHKs~eia~~Q~~~Ga~git~at~~EAe~~~~~G~~-dilia~~ 79 (382)
T cd06818 1 VSLPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR-RVLLANQ 79 (382)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC-CEEEECC
T ss_conf 999779970999999999999999866983520401004799999999689983896779999999976986-4799426
Q ss_pred CCCH---HHHHHHHCC--CCE--EEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-HHH--
Q ss_conf 7780---347886138--868--985672059999998612345614899635774431012455786435742-788--
Q gi|254780741|r 80 AYKD---CEIDAVLSN--CDT--IIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK-CKD-- 149 (367)
Q Consensus 80 ~~~~---~el~~a~~~--~~~--i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~-~~~-- 149 (367)
...+ +.+.++.+. ... +.+||.+.++.|.+.++..+.++.+-|.-+.+ ..|-|+. .++
T Consensus 80 iv~~~~~~rl~~l~~~~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ievd~G------------~~R~Gv~~~~~a~ 147 (382)
T cd06818 80 LVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP------------GGRTGVRTEAEAL 147 (382)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHH
T ss_conf 5798899999999850899789999629999999999998559945899997889------------8878999869999
Q ss_pred -H----HHHHHCCCEEEEECCCCC--CCCHHH---HHHHHHHHHHHH---HHCCC-CCE-EEEECCCCCCCCCCCCCHHH
Q ss_conf -8----874314960665305656--661478---999999999898---65088-750-87533776664455680789
Q gi|254780741|r 150 -K----IESEIKNVNGLMFHNNCE--NKSFLC---FSAMLKNIEKEF---GHFIT-QIE-WISLGGGIHFTDKDYPVKDF 214 (367)
Q Consensus 150 -~----~~~~~~~i~Gih~H~gs~--~~~~~~---~~~~l~~~~~~~---~~~~~-~l~-~idiGGG~~~~~~~~~~~~~ 214 (367)
+ .+....++.||+.|-|.- ..+.+. ..+.+..+.+.. .+.+. ... .+=-|||=+ +++..
T Consensus 148 ~l~~~i~~~~~L~~~Gl~~y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivs~GgT~------~f~~~ 221 (382)
T cd06818 148 ALADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILTAGGSA------WFDLV 221 (382)
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC------CHHHH
T ss_conf 999999729996594688546756678866899999999999999999999706788897089982895------54333
Q ss_pred HHHHHHHHHHCCCEEEEEHHHHCCCC-------------------------CEEEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 99999875421650453002201457-------------------------41888788786304433343333565656
Q gi|254780741|r 215 CQRLKEFSEKYSVQIYLEPGEAIVTN-------------------------TTTLNTTVLDISENIKNLVIVDSSVEAHV 269 (367)
Q Consensus 215 ~~~i~~~~~~~~~~l~iEPGR~lv~~-------------------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~ 269 (367)
.+.........+.+..+-||.|+.-| |...+++|+.+ ...+++++|+|.-.+-
T Consensus 222 ~~~~~~~~~~~~~~~elrpG~Yvf~D~g~Y~~~~~~~~~~~~~~~~~~f~~Al~VlttViS~--p~~~~ailDaG~K~ls 299 (382)
T cd06818 222 AEALAALALDGPVTLVLRSGCYVTHDHGIYRRAQQALRARDPLSLAGALRPALEIWAYVQSR--PEPGLAILGMGKRDVA 299 (382)
T ss_pred HHHHCCCCCCCCCEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC--CCCCEEEECCCCCCCC
T ss_conf 45541445687732798671699745278764324443036655332221215999999642--4699699888651200
Q ss_pred CCCCCCCCCCCCCCC------CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE
Q ss_conf 640013455300024------78645998623336664552135667788798999968870223243476899887799
Q gi|254780741|r 270 PDYLLYQESATIYPN------TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA 343 (367)
Q Consensus 270 ~~~~~~~~~~~~~~~------~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v 343 (367)
.+.-. + .+..... .....+.|.+- -+++=++. .....++++||.|-+..-=+ | +.+|.+ +..+
T Consensus 300 ~D~g~-P-~~~~~~~~g~~~~~~~~~~~v~~~-seEHgil~-~~~~~~l~vGd~v~iiP~H~-C----~T~n~~--~~~~ 368 (382)
T cd06818 300 FDAGL-P-VPLRVFRPGGGVVRLPDGWEVTAL-NDQHAFLR-LPPESPLAVGDVIAFGISHP-C----TTFDKW--RVIL 368 (382)
T ss_pred CCCCC-C-CCCCCCCCCCCCCCCCCCEEEECC-CCCEEEEE-CCCCCCCCCCCEEEEECCCC-C----CCHHHC--CEEE
T ss_conf 24699-8-653201588532358997078011-36324787-79989999977899979964-7----391108--8899
Q ss_pred EEECCCCE
Q ss_conf 99679909
Q gi|254780741|r 344 VKNVDGTI 351 (367)
Q Consensus 344 ~~~~~g~~ 351 (367)
++++|+.+
T Consensus 369 vVd~~~~V 376 (382)
T cd06818 369 LVDDDYRV 376 (382)
T ss_pred EEECCCEE
T ss_conf 99798869
No 26
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.71 E-value=9.3e-14 Score=110.24 Aligned_cols=302 Identities=13% Similarity=0.078 Sum_probs=178.6
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf 888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~ 78 (367)
|+||+.++|.+.+++|++.++......++++.=-+||--.+.+.+..-+.| .|+-|+++.|++.. ..|+ +.|++ +
T Consensus 1 l~TP~l~vd~~~l~~Ni~~m~~~~~~~gv~lrPH~KThk~~e~~~~ql~~Ga~g~~vatl~EAe~l~~~G~--~dilla~ 78 (353)
T cd06820 1 LDTPALLIDLDRLERNIARMQAYADAHGLSLRPHIKTHKSPEIARLQLAAGAIGITVATVGEAEVMADAGL--SDIFIAY 78 (353)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCC--CCEEEEC
T ss_conf 99977997299999999999998987699477885131479999999867997499972999999997699--7668843
Q ss_pred CCCCHHH---HHHHHCC-CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-HHHH---
Q ss_conf 7778034---7886138-868985672059999998612345614899635774431012455786435742-7888---
Q gi|254780741|r 79 VAYKDCE---IDAVLSN-CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK-CKDK--- 150 (367)
Q Consensus 79 ~~~~~~e---l~~a~~~-~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~-~~~~--- 150 (367)
|...+.. +.++.+. ...+.+||.+.++.+.+.++..+.++.+-|..+.+ ..|-|+. .+++
T Consensus 79 p~v~~~~~~~l~~l~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ieid~G------------~~R~Gv~~~~~~~~l 146 (353)
T cd06820 79 PIVGRQKLERLRALAERVTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG------------MNRCGVQTPEDAVAL 146 (353)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHHHH
T ss_conf 66898999999974304988999657999999999997679942899996888------------886888986999999
Q ss_pred ----HHHHHCCCEEEEECCCCCCCCHHH-------HHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCHHHHHH
Q ss_conf ----874314960665305656661478-------999999999898650887508753377--6664455680789999
Q gi|254780741|r 151 ----IESEIKNVNGLMFHNNCENKSFLC-------FSAMLKNIEKEFGHFITQIEWISLGGG--IHFTDKDYPVKDFCQR 217 (367)
Q Consensus 151 ----~~~~~~~i~Gih~H~gs~~~~~~~-------~~~~l~~~~~~~~~~~~~l~~idiGGG--~~~~~~~~~~~~~~~~ 217 (367)
.+....++.|++.|-| +...... ..+.+......+.+.+.....+..||= +........+
T Consensus 147 ~~~i~~~~~l~l~Gv~~y~G-h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT~t~~~~~~~~~~------ 219 (353)
T cd06820 147 ARAIASAPGLRFRGIFTYPG-HSYAPGALEEAAADEAEALLAAAGILEEAGLEPPVVSGGSTPTLWRSHEVPGI------ 219 (353)
T ss_pred HHHHHHCCCCEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEHHCCCCC------
T ss_conf 99998589976889995487-66783469999999999999999998846999888985699754600016765------
Q ss_pred HHHHHHHCCCEEEEEHHHHCCC--------------CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 9987542165045300220145--------------74188878878630443334333356565664001-34553000
Q gi|254780741|r 218 LKEFSEKYSVQIYLEPGEAIVT--------------NTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLL-YQESATIY 282 (367)
Q Consensus 218 i~~~~~~~~~~l~iEPGR~lv~--------------~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~-~~~~~~~~ 282 (367)
..+-||.|+.- .|...+++|+.+- ....+++|+|.-.+-.+.-. ..-+-.+.
T Consensus 220 -----------tEl~~G~yvf~D~~~~~~~~~~~~~~Al~vl~~ViS~p--~~~~~~vd~G~k~ls~d~~~~~~g~g~~~ 286 (353)
T cd06820 220 -----------TEIRPGTYIFNDASQVALGACTLDDCALTVLATVVSRP--TAERAVLDAGSKALTSDRGTGTTGYGHLL 286 (353)
T ss_pred -----------CEECCCEEEECCHHHHCCCCCCHHHCEEEEEEEEEEEC--CCCCEEEECCCHHHCCCCCCCCCCCCCCC
T ss_conf -----------16614317951567740476883123257888899406--99808990564443256788976775213
Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 247864599862333666455213566778879899996887022324347689988779999679
Q gi|254780741|r 283 PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD 348 (367)
Q Consensus 283 ~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~ 348 (367)
..+ ...+.+.+ +++=++.-.-....+++||.|.+...=+= . .+|.+ +..++++++
T Consensus 287 ~~~---~~~~~~~s-~EHg~l~~~~~~~~l~vGd~v~~~P~H~c-~----t~~~~--~~~~vv~~~ 341 (353)
T cd06820 287 EYP---DARIVGLS-EEHGVIDLSGCDALPRVGDRVRVVPNHAC-V----VVNLV--DEVYLVDGG 341 (353)
T ss_pred CCC---CCEEEEEC-CCCEEEECCCCCCCCCCCCEEEEEECCCC-H----HHHHC--CEEEEEECC
T ss_conf 899---87794000-77408878887789999999999938821-7----68847--989999999
No 27
>TIGR01273 speA arginine decarboxylase; InterPro: IPR002985 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes eukaryotic ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. The tomato ADC gene contains an open reading frame encoding a polypeptide of 502 amino acids and a predicted molecular mass of ~55 kD . The predicted amino acid sequence shares 47 and 38 0dentify with oat and Escherichia coli ADCs, respectively. Gel blot hybridisation experiments show that, in tomato, ADC is encoded by a single gene and is expressed as a transcript of ~2.2 kb in the fruit pericarp and leaf tissues .; GO: 0008792 arginine decarboxylase activity, 0006527 arginine catabolic process, 0008295 spermidine biosynthetic process.
Probab=99.67 E-value=9.4e-15 Score=116.82 Aligned_cols=364 Identities=19% Similarity=0.207 Sum_probs=240.3
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH--------CCCEEEEEEECCCCHHHHHHHHHH------CCEEEEECHHHHHHHH
Q ss_conf 88856897799999999999998533--------698699954105999999999851------8748980799998987
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN--------AGVKLLLALKCFAAWGMFDTLNQY------MDGTTSSSLYEVMLGH 67 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~--------~~~~i~yA~KaN~~~~il~~l~~~------g~g~dv~S~~E~~la~ 67 (367)
++-|+.+-..+.+..++..+..++.. ...+..|++|.|....++..+... ..|.+++|.-|+..+.
T Consensus 61 ~~~p~~~~fp~~~~~~~~~~~~~f~~~~~~~~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gl~~g~~p~~~~~~ 140 (657)
T TIGR01273 61 LKLPLLLRFPDILQHRLRSLNDAFDNAIEEYGYPGHYQGVYPIKVNQHRGVVEDLVAFGKGYGLPLGLEAGSKPELLLAL 140 (657)
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 12540010157888998888888877776413676301564132054156899987521014654332357623677876
Q ss_pred C--CC--CCCCEEECCCCCHHHHHHHH-----CCCCEEEECCCHHHHHHHHHHHC--CCC--CCEEEEEECCCCCCCCCC
Q ss_conf 3--68--80108853777803478861-----38868985672059999998612--345--614899635774431012
Q gi|254780741|r 68 E--KF--GGETHAYNVAYKDCEIDAVL-----SNCDTIIFNTVSQLNKFKDKAQK--LHK--KIGLRINPSVSYSKFILA 134 (367)
Q Consensus 68 ~--g~--~~~~i~~~~~~~~~el~~a~-----~~~~~i~iDs~~El~~i~~~a~~--~~~--~I~lRinP~~~~~~~~~~ 134 (367)
. .. ++..++.|+-+..+-++.++ .....++++...|++.+.+.++. .+. .+++|+.-. +.+...+.
T Consensus 141 ~~~~~~~~~~~~~c~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~-~~~~g~w~ 219 (657)
T TIGR01273 141 ALATKGNPGAPIVCNGYKDREYIELALIGRKLGHNVFIVLEKLSELDLVLDEAKKNELGVKPKLGLRARLL-SKGSGKWG 219 (657)
T ss_pred HHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEH-HCCCCCCC
T ss_conf 66214677634786165414577777654311651488851446678998765212224554433001100-00355221
Q ss_pred CCCCCCCCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCC-CEEEEECCCC
Q ss_conf 45578643574278888743--------149606653056566614789999999998986---50887-5087533776
Q gi|254780741|r 135 DPNRPFSRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQ-IEWISLGGGI 202 (367)
Q Consensus 135 ~~~~~~skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~-l~~idiGGG~ 202 (367)
.+++..+|||....++.... ...+.-+|||.|++......+.+.+....+.+. +++.. ++++|+|||+
T Consensus 220 ~~~g~~~~fgl~~~~~~~~~~~~~~~~~~~~~~~~h~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gggl 299 (657)
T TIGR01273 220 SSGGEKSKFGLSASEVLEVVKLLEENGLLDSLKLLHFHLGSQISNLDDLKKGLREAARLYCELRKLGAPNIDYVDVGGGL 299 (657)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 23565321355489999999987640134556665543111001367888888888999999987245533156447653
Q ss_pred CCCCCC-----------CCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECC-CC--CCCCC
Q ss_conf 664455-----------68078999----9998754216---5045300220145741888788786304-43--33433
Q gi|254780741|r 203 HFTDKD-----------YPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISEN-IK--NLVIV 261 (367)
Q Consensus 203 ~~~~~~-----------~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~--~~v~v 261 (367)
++.+.. +.+++++. .++..++..+ +.++.|.||++.+....+++.++..... .. .--..
T Consensus 300 g~~y~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~c~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (657)
T TIGR01273 300 GVDYDGTKSSSSDCSVNYGLEEYASDVVGALREVCDDKGLPHPVIITESGRALTAHHAVLVTNVLGVEAHPEDPPDPEPL 379 (657)
T ss_pred CCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHHHCCCCCCCCCCCHHC
T ss_conf 22445432343200110236788889999999888740776762330266300000021111333112345565420001
Q ss_pred C-CC---CC-------CC--------------------------------------------------------------
Q ss_conf 3-35---65-------65--------------------------------------------------------------
Q gi|254780741|r 262 D-SS---VE-------AH-------------------------------------------------------------- 268 (367)
Q Consensus 262 d-~g---~~-------~~-------------------------------------------------------------- 268 (367)
+ .. .. ..
T Consensus 380 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (657)
T TIGR01273 380 DEDAPPLVRGLWETLEDLYGPLDRRSLLELLHDALHLLEEAVEGFALGYLDLEERAWAEQLYLAILRKLHGKLSAKNKDH 459 (657)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 34302688888899998740000246788888888888777765530100146666678999999988877666421442
Q ss_pred ------------------------CCCCCCCCCCCCCCC-----CCCCEEEEEECCCCCCCCEEEE---------CCCC-
Q ss_conf ------------------------664001345530002-----4786459986233366645521---------3566-
Q gi|254780741|r 269 ------------------------VPDYLLYQESATIYP-----NTGPYTAMVCGRSCLAGDIFGE---------FHFE- 309 (367)
Q Consensus 269 ------------------------~~~~~~~~~~~~~~~-----~~~~~~~~v~G~~C~~~D~l~~---------~~~~- 309 (367)
+++.|-......+.| ........+.--+|++.-.+.. ...+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~f~~~pd~w~~~~~~p~~p~~~l~~~p~~~~~~~d~~cd~dg~~~~~~~~~~~~~~~p~~ 539 (657)
T TIGR01273 460 RPVLDELQERLADKYLVNFSLFQSLPDAWGIDQLFPILPLERLDEKPDRRAVLLDLTCDSDGKVDKFVGGQGLESTLPLH 539 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 15788766666666653124443143111010101222200024320011101000147752034441235542213345
Q ss_pred -CCC---CCC-CEEEEECCCCHHHHHCCCCC--CCCCCEEEEEECCC-CEEEE--E-ECCHHHHHHHC
Q ss_conf -778---879-89999688702232434768--99887799996799-09999--7-38989998742
Q gi|254780741|r 310 -KPV---KIG-DRISFEDVAGYNINRKNWFN--GINMPTIAVKNVDG-TIKAI--R-EFSYNDYYNNL 366 (367)
Q Consensus 310 -~~l---~~G-D~l~i~~~GAY~~~~~~~Fn--~~~~P~~v~~~~~g-~~~~~--r-~e~~~d~~~~~ 366 (367)
.+. ..+ -++.|.-+|||...++...| +-+....+..+.+| ...+- + .++.+|.+..+
T Consensus 540 ~~~~~gc~~~~~~~g~~~~g~y~~~lg~~h~lfg~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~ 607 (657)
T TIGR01273 540 ELDPNGCDEGGYLLGFFLVGAYQEILGDLHNLFGDTDAVEVVLDGDGGGYEVELVLEGDTTEDLLRYV 607 (657)
T ss_pred CCCCCCCCCCCCEEEEEEHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCEEHHHHHHCCHHHHHHHHH
T ss_conf 55666777664056421022368763112220488514788762787530012343020278888863
No 28
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.65 E-value=4.6e-12 Score=99.08 Aligned_cols=314 Identities=15% Similarity=0.100 Sum_probs=186.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf 888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~ 78 (367)
|+||+.|+|.+.+++|+++++......+.++.=-+||--.+.+.+..-+.| .|+-|+.+.|++.. .+|+. .|.+ +
T Consensus 4 l~TPalvvd~~~l~~Ni~~M~~~~~~~g~~lRPH~KTHKs~eia~~Q~~~Ga~gi~~atv~EAe~~a~~G~~--dIl~a~ 81 (374)
T cd06812 4 LDTPFLLLDEARMDRNIARLRQRLSRLGVRLRPHLKTAKSLEVARRLLAAGASPATVSTLKEAEAFAEAGYR--DILYAV 81 (374)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCC--EEEEEC
T ss_conf 899769972999999999999999876996602610014799999999679984897889999999977987--399935
Q ss_pred CCCCH--HHHHHHHCCC--CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH------
Q ss_conf 77780--3478861388--6898567205999999861234561489963577443101245578643574278------
Q gi|254780741|r 79 VAYKD--CEIDAVLSNC--DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK------ 148 (367)
Q Consensus 79 ~~~~~--~el~~a~~~~--~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~------ 148 (367)
|.... ..+.++.+.+ ..+.+||.+.++.+.+.++..+.++.+-|.-+.+ ..|-|+...
T Consensus 82 ~i~~~kl~rl~~l~~~~~~~~v~VD~~~~~~~l~~~~~~~g~~~~V~Ievd~G------------~~RtGv~~~~~al~~ 149 (374)
T cd06812 82 GIAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDCD------------GHRGGIAPDSDALLE 149 (374)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCCHHHHHH
T ss_conf 77878999999997369948999557999999999999759944699997689------------986788970699999
Q ss_pred --HHHHHHHCCCEEEEECCC-CCC-CCHHHHHH-------HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf --888743149606653056-566-61478999-------9999998986508875087533776664455680789999
Q gi|254780741|r 149 --DKIESEIKNVNGLMFHNN-CEN-KSFLCFSA-------MLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQR 217 (367)
Q Consensus 149 --~~~~~~~~~i~Gih~H~g-s~~-~~~~~~~~-------~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~ 217 (367)
++......++.|++.|-| ++. .+.+.... .+..+.+.+.+.+.....+-.||- |........+
T Consensus 150 ~~~~~~~~~l~~~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT-pt~~~~~~~~----- 223 (374)
T cd06812 150 IARILHDGGAELRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVGST-PTAHFAEDLT----- 223 (374)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCEEECCCC-----
T ss_conf 9999747997454676238743478999999999999999999999999865999887852688-7400110367-----
Q ss_pred HHHHHHHCCCEEEEEHHHHCCCC--------------CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-C----C
Q ss_conf 99875421650453002201457--------------418887887863044333433335656566400134-5----5
Q gi|254780741|r 218 LKEFSEKYSVQIYLEPGEAIVTN--------------TTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQ-E----S 278 (367)
Q Consensus 218 i~~~~~~~~~~l~iEPGR~lv~~--------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~-~----~ 278 (367)
++ .-+-||.|+.-| |...+++|+.++. .+..+++|+|.-.+-++..... . +
T Consensus 224 --------gv-tE~~pG~Yvf~D~~~~~~g~~~~~~~Al~Vl~tViS~~p-~~~~~~iDaG~kals~D~g~~~~~~~~g~ 293 (374)
T cd06812 224 --------GV-TEVRAGVYVFFDLVMAGIGVCGLDDIALSVVTTVIGHQP-EKGWILIDAGWMALSRDRGTARQAVDQGY 293 (374)
T ss_pred --------CC-CCCCCCEEEECCHHHHCCCCCCHHHHHHEEEEEEEECCC-CCCCEEECCCCCEEECCCCCCCCCCCCCC
T ss_conf --------75-201572158504777515889756510224457651378-99937975774012114577667655666
Q ss_pred CCCCCCCC-C-EEEEEECCCCCCCCEEEE----CCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEE
Q ss_conf 30002478-6-459986233366645521----35667788798999968870223243476899887799996799099
Q gi|254780741|r 279 ATIYPNTG-P-YTAMVCGRSCLAGDIFGE----FHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIK 352 (367)
Q Consensus 279 ~~~~~~~~-~-~~~~v~G~~C~~~D~l~~----~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~ 352 (367)
..+....+ . ..+.+.+.+ +++=++.- ....+++++||.|-+..-=+ | +.+|.+ +..+++++||.+.
T Consensus 294 g~v~~~~g~~~~~~~v~~~s-eEHg~l~~~~~~~~~~~~l~vGd~v~liP~H~-C----~T~~l~--~~~~vv~~~g~V~ 365 (374)
T cd06812 294 GLVCDVAGSPLPGLIVTSTN-QEHGIIALRGGSDLSLPDLPIGTRLRILPNHA-C----ATAAQH--DHYHVLDGEGVVQ 365 (374)
T ss_pred CEEECCCCCCCCCEEEECCC-CCCEEEECCCCCCCCCCCCCCCCEEEEECCCC-C----CCHHCC--CEEEEEECCCEEE
T ss_conf 55615778858984891355-65059977888755456798488899964985-9----021157--8799997989899
Q ss_pred E
Q ss_conf 9
Q gi|254780741|r 353 A 353 (367)
Q Consensus 353 ~ 353 (367)
-
T Consensus 366 ~ 366 (374)
T cd06812 366 A 366 (374)
T ss_pred E
T ss_conf 9
No 29
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.65 E-value=1e-12 Score=103.46 Aligned_cols=302 Identities=15% Similarity=0.076 Sum_probs=178.8
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf 888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~ 78 (367)
|+||+.++|.+.+++|++.++......++++.=-+||-..+.+.+..-+.| .|+-|+++.|++.. ..|+ +.|.+ +
T Consensus 5 l~TP~lvvd~~~l~~Ni~~m~~~~~~~gv~lrPH~KThks~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G~--~dIlla~ 82 (358)
T cd06819 5 IDTPALVLDLDALERNIKRMAAFAKAHGVRLRPHAKTHKCPAIARRQIAAGAVGVCCQKLSEAEVMAAAGI--RDILITN 82 (358)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCC--CEEEEEC
T ss_conf 69983997299999999999999986799677773120789999999966997499657999999997799--7068854
Q ss_pred CCCCH---HHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HH----
Q ss_conf 77780---3478861388-689856720599999986123456148996357744310124557864357427-88----
Q gi|254780741|r 79 VAYKD---CEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KD---- 149 (367)
Q Consensus 79 ~~~~~---~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~---- 149 (367)
|...+ +.+.++.+.. ..+.+||.+.++.+.+.++..+.++.+-|.-+.+ ..|-|+.. ++
T Consensus 83 p~v~~~~l~rl~~l~~~~~~~~~vDs~~~~~~l~~~a~~~~~~~~V~Ievd~G------------~~R~Gv~~~~~~~~l 150 (358)
T cd06819 83 EVVGPAKIARLAALARRAPLIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG------------QGRCGVPPGEAALAL 150 (358)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHHHH
T ss_conf 66897899999999854998999949999999999998659963699997889------------987788886999999
Q ss_pred ---HHHHHHCCCEEEEECCCC--CCCCHHHHH-------HHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCCCCCHHHHH
Q ss_conf ---887431496066530565--666147899-------9999999898650887508753377-666445568078999
Q gi|254780741|r 150 ---KIESEIKNVNGLMFHNNC--ENKSFLCFS-------AMLKNIEKEFGHFITQIEWISLGGG-IHFTDKDYPVKDFCQ 216 (367)
Q Consensus 150 ---~~~~~~~~i~Gih~H~gs--~~~~~~~~~-------~~l~~~~~~~~~~~~~l~~idiGGG-~~~~~~~~~~~~~~~ 216 (367)
+.+....++.|++.|-|. +..+.+.-+ +.+..+.+.+.+.+.....+..||- ..--..+.
T Consensus 151 a~~I~~~~~l~l~Gi~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ivs~GgT~t~~~~~~~------- 223 (358)
T cd06819 151 ARTIAALPGLRFAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGLPCEIVTGGGTGTYEFEAAS------- 223 (358)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEECCC-------
T ss_conf 9999848998062010465333027998999999999999999999999966999855744788750222256-------
Q ss_pred HHHHHHHHCCCEEEEEHHHHCC-----------------CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9998754216504530022014-----------------57418887887863044333433335656566400134553
Q gi|254780741|r 217 RLKEFSEKYSVQIYLEPGEAIV-----------------TNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESA 279 (367)
Q Consensus 217 ~i~~~~~~~~~~l~iEPGR~lv-----------------~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~ 279 (367)
+....+-||.|+. ..|...+++|+.+ ....++++|+|...+-.+.- .+
T Consensus 224 ---------~~~tEl~~G~yvf~D~~y~~~~~~~~~~~~~~Al~V~~~ViS~--p~~~~~~vd~G~k~ls~d~g----~p 288 (358)
T cd06819 224 ---------GVYTELQAGSYVFMDADYGDNEDEGGAPPFENALFVLTTVISA--NAPGRAVVDAGLKSLSVDSG----LP 288 (358)
T ss_pred ---------CCEEEECCCEEEEECHHHHHHCCCCCCCCCCEEEEEEEEEECC--CCCCCEEECCCCCCCCCCCC----CC
T ss_conf ---------7337977842996167886411345676665007998677725--78882786477630003678----88
Q ss_pred CCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf 000247864599862333666455213566778879899996887022324347689988779999679909
Q gi|254780741|r 280 TIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTI 351 (367)
Q Consensus 280 ~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~ 351 (367)
...... .+.+.+ +-+++=++.......++++||.|.|...=+ |. .+|.+ +..+++++ |.+
T Consensus 289 ~~~~~~---~~~v~~-~s~EHg~l~~~~~~~~l~vGd~v~~~P~H~-C~----t~~~~--~~~~vv~~-~~V 348 (358)
T cd06819 289 KVAGRP---GLSYVR-AGDEHGIVELEDGAAPLKIGDRLELVPGHC-DP----TVNLH--DWYVGVRG-GVV 348 (358)
T ss_pred CCCCCC---CCEEEC-CCCCEEEEECCCCCCCCCCCCEEEEEECCC-CH----HHHHC--CEEEEEEC-CEE
T ss_conf 565899---857940-157500787799878999999999980883-26----37738--98999999-999
No 30
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.59 E-value=7.1e-12 Score=97.85 Aligned_cols=300 Identities=11% Similarity=0.046 Sum_probs=171.9
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-C
Q ss_conf 888568977999999999999985336986999541059999999998518-74898079999898-73688010885-3
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-N 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~ 78 (367)
|+||+.+.|.+.+++|+++++...+..+ ++.=-+||--.+.+.+..-+.| .|+.|+++.|++.. ..|+. .|.+ +
T Consensus 7 l~TPalvvD~~~l~~Ni~~m~~~~~~~~-~lRPH~KThKs~~ia~~Ql~~Ga~gi~vatl~EAe~~a~~G~~--dIlia~ 83 (361)
T cd06821 7 IISPALAVYPDRIEENIRRMIRMAGDPQ-RLRPHVKTHKMAEIVRLQLEAGITKFKCATIAEAEMLAEAGAP--DVLLAY 83 (361)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHCCCC--CEEEEC
T ss_conf 8997399719999999999999623168-7778964117999999999779983796279999999975997--589975
Q ss_pred CCCCHH--HHHHHHCC--C--CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-H-
Q ss_conf 777803--47886138--8--68985672059999998612345614899635774431012455786435742788-8-
Q gi|254780741|r 79 VAYKDC--EIDAVLSN--C--DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD-K- 150 (367)
Q Consensus 79 ~~~~~~--el~~a~~~--~--~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~-~- 150 (367)
|...++ .+.++.+. . ..+.+||.+.++.+.+.+...+.++.+-|.-+.+ ..|-|+...+ +
T Consensus 84 piv~~k~~rl~~l~~~~~~~~i~v~VDs~~~~~~l~~~~~~~~~~~~V~ievD~G------------~~R~Gv~~~~~a~ 151 (361)
T cd06821 84 PLVGPNIERFLELAKKYPGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG------------MNRTGIAPGEDAE 151 (361)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCC------------CCCCCCCCHHHHH
T ss_conf 7765669999998753889779999708999999999998669960699997678------------8868888879999
Q ss_pred ------HHHHHCCCEEEEECCCC-CCCCHHH----HHHH---HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf ------87431496066530565-6661478----9999---99999898650887508753377666445568078999
Q gi|254780741|r 151 ------IESEIKNVNGLMFHNNC-ENKSFLC----FSAM---LKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQ 216 (367)
Q Consensus 151 ------~~~~~~~i~Gih~H~gs-~~~~~~~----~~~~---l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~ 216 (367)
.+....++.|++.|-|. +..+.+. .++. +..+.+.+++.+.....+.+||- | .+++.
T Consensus 152 ~La~~i~~~~~L~l~Gi~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~GgT-p----t~~~~---- 222 (361)
T cd06821 152 ELYRAIATLPGLVLAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVAGGT-P----SFPFH---- 222 (361)
T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-C----CCCCC----
T ss_conf 99999985899838789865363456787999999999999999999999974999751405797-5----40300----
Q ss_pred HHHHHHHHCCCEEEEEHHHHCCCC--------------CEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999875421650453002201457--------------418887887863044333433335656566400134553000
Q gi|254780741|r 217 RLKEFSEKYSVQIYLEPGEAIVTN--------------TTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIY 282 (367)
Q Consensus 217 ~i~~~~~~~~~~l~iEPGR~lv~~--------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~ 282 (367)
..+. .+-+-||.|+.-| |...+++|+.. ...+.+++|+|.-.+-.+... +. . ..
T Consensus 223 ------~~~~-~~Ev~pG~yvf~D~~~~~~~~~~~~~~Al~Vla~ViS~--p~~~~~~vDaG~k~ls~D~~~-p~-~-~~ 290 (361)
T cd06821 223 ------AAYT-DVECSPGTFVLWDAGYGSKLPDLGFKPAALVVTRVISH--PTAGRVTLDLGHKAVASDPPL-PR-V-CL 290 (361)
T ss_pred ------CCCC-CEEECCCEEEECCCHHHHCCCCCCCCEEEEEEEEEEEE--CCCCEEEECCCCCCCCCCCCC-CC-C-EE
T ss_conf ------0377-44753765898252344226675543226999999714--489906877764400356799-85-1-46
Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 247864599862333666455213566778879899996887022324347689988779999679
Q gi|254780741|r 283 PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD 348 (367)
Q Consensus 283 ~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~ 348 (367)
.... .+.+.|.+ +++=++ +.....++++||.|.+...=+ |. .+|.+ +..++++++
T Consensus 291 ~~~~--~~~~~~~s-~EHg~l-~~~~~~~l~vGd~v~i~P~H~-C~----t~~~~--~~~~vv~~~ 345 (361)
T cd06821 291 LGLP--DAEPVGHS-EEHLVL-ETPEAARPEIGDVLYGIPRHI-CP----TVALY--DEALVVRDG 345 (361)
T ss_pred CCCC--CCEECCCC-CCEEEE-ECCCCCCCCCCCEEEEECCCC-CH----HHHHC--CEEEEEECC
T ss_conf 0799--85680456-866048-889888899999999973984-85----57717--879999999
No 31
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.54 E-value=3.5e-11 Score=93.31 Aligned_cols=312 Identities=14% Similarity=0.092 Sum_probs=188.3
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEECCC
Q ss_conf 8568977999999999999985336986999541059-999999998518-74898079999898-73688010885377
Q gi|254780741|r 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA-AWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAYNVA 80 (367)
Q Consensus 4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~-~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~~~~ 80 (367)
.|.-..|.+.|+.|++.+++.....++++.=-+|||. .+.|.+.+.+.| .++-++.+.|+..- .+|.....++..++
T Consensus 1 ~PrleIdL~~l~~N~~~l~~~~~~~gi~~~~VvKa~aG~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi~~pillL~~p 80 (353)
T cd06815 1 YPRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLLRIP 80 (353)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf 97699839999999999999760549889999844689599999999879999997028999999975999978997268
Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------
Q ss_conf 7803478861388689856720599999986123456148996357744310124557864357427888874-------
Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------- 153 (367)
Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------- 153 (367)
. .++++.+++......+-+++.++.+.+.|++.+++..+-+.- ++ ..+|.|+..+++.+.
T Consensus 81 ~-~se~~~vv~~~dis~~se~~~i~aLs~~A~~~gk~~~V~l~V----------Dt--Gm~R~Gv~ped~~~~~~~I~~l 147 (353)
T cd06815 81 M-LSEVEDVVKYADISLNSELETIKALSEEAKKQGKIHKIILMV----------DL--GDLREGVLPEDLLDFVEEILKL 147 (353)
T ss_pred C-HHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCEEEEEEEE----------EC--CCCCCCCCHHHHHHHHHHHHCC
T ss_conf 8-889999987330420287999999999999869847899999----------68--9995788989999999998659
Q ss_pred HHCCCEEEEECCCCCCC---CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CCCCCCCHHHHHHHHHHHHH----
Q ss_conf 31496066530565666---1478999999999898650887508753377666--44556807899999987542----
Q gi|254780741|r 154 EIKNVNGLMFHNNCENK---SFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHF--TDKDYPVKDFCQRLKEFSEK---- 224 (367)
Q Consensus 154 ~~~~i~Gih~H~gs~~~---~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~--~~~~~~~~~~~~~i~~~~~~---- 224 (367)
....++||..|.+|... +.+.+.+..+...++-.+++.+++++.-|+--.+ -..+... ..+.++.--
T Consensus 148 p~i~l~GI~ThfaC~~gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~----~~IN~lRiGe~i~ 223 (353)
T cd06815 148 PGIELVGIGTNLGCYGGVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELP----GGINQLRIGEAIL 223 (353)
T ss_pred CCCEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCC----CCCCCCCCCCEEE
T ss_conf 995999988876357888999999999999999999984998766970537768988558985----4321033331589
Q ss_pred CCCE-EEEEHHHHCCCCCEEEEEEEEEEECC-C------------CCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 1650-45300220145741888788786304-4------------333433335656-5664001345530002478645
Q gi|254780741|r 225 YSVQ-IYLEPGEAIVTNTTTLNTTVLDISEN-I------------KNLVIVDSSVEA-HVPDYLLYQESATIYPNTGPYT 289 (367)
Q Consensus 225 ~~~~-l~iEPGR~lv~~ag~lv~~V~~~K~~-~------------~~~v~vd~g~~~-~~~~~~~~~~~~~~~~~~~~~~ 289 (367)
++.. ..=+|=-.+--|+..|.++|+.+|+. - ....+.|-|... -+-+..+..-.+... ......
T Consensus 224 ~G~~~~~~~~i~~l~~d~~~L~aeViEik~kps~p~g~~g~~afG~~~~f~d~g~~~rAIl~iG~~D~~~~~l-~p~~~~ 302 (353)
T cd06815 224 LGRETTYNEPIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDVDPDGL-TPVDNG 302 (353)
T ss_pred EECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCCCHHHC-EECCCC
T ss_conf 6125777764300046418999999995046777876312257787522426884179999766555777563-477998
Q ss_pred EEEECCCCCCCCEEEECCCC--CCCCCCCEEEEEC-CCCHHHHHCCCCCC
Q ss_conf 99862333666455213566--7788798999968-87022324347689
Q gi|254780741|r 290 AMVCGRSCLAGDIFGEFHFE--KPVKIGDRISFED-VAGYNINRKNWFNG 336 (367)
Q Consensus 290 ~~v~G~~C~~~D~l~~~~~~--~~l~~GD~l~i~~-~GAY~~~~~~~Fn~ 336 (367)
..|.|. |.|.+.-+... .++++||.+-|.- =||--.+|.|.|..
T Consensus 303 i~IlGa---sSDhlivDit~~~~~~kvGD~i~F~l~Y~a~l~~m~s~~v~ 349 (353)
T cd06815 303 IEILGA---SSDHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTSPYVE 349 (353)
T ss_pred EEEEEC---CCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCEE
T ss_conf 099822---57548997767768888898899965999999984589814
No 32
>PRK03646 dadX alanine racemase; Reviewed
Probab=99.54 E-value=1.9e-10 Score=88.45 Aligned_cols=294 Identities=14% Similarity=0.057 Sum_probs=167.9
Q ss_pred CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----HHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC
Q ss_conf 568-97799999999999998533698699954105999----9999998518748980799998987-36880108853
Q gi|254780741|r 5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAW----GMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN 78 (367)
Q Consensus 5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~----~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~ 78 (367)
|.+ ..|.+.|++|++.++.. .++.+++-.+|||..= .|.+.+ +.-++|-|+++.|....+ +|.....++++
T Consensus 3 p~~a~IdL~al~~N~~~lr~~--~~~~~i~aVVKAnAYGhG~~~va~~l-~g~~~faVa~~~Ea~~LR~~gi~~pIlvl~ 79 (355)
T PRK03646 3 PIQASLDLQALKQNLSIVREA--APGARVWSVVKANAYGHGIERIWSAL-GATDGFAVLNLEEAITLRERGWKGPILMLE 79 (355)
T ss_pred CEEEEEEHHHHHHHHHHHHHH--CCCCEEEEEEEECCCCCCHHHHHHHH-HCCCEEEEEEHHHHHHHHHCCCCCCEEEEC
T ss_conf 789999699999999999855--89986999995344648799999998-389979994699999999649999779753
Q ss_pred CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf 777803478861388689856720599999986123456148996357744310124557864357427888874-----
Q gi|254780741|r 79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----- 153 (367)
Q Consensus 79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----- 153 (367)
|...++++..+.++.-..++.|..+++.+.+.....+.+|-|.| +|| .+|+|+..+++.+.
T Consensus 80 g~~~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~vhlki------------DTG--M~RlG~~~~e~~~~~~~l~ 145 (355)
T PRK03646 80 GFFHAQELELYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKV------------NSG--MNRLGFQPERVQTVWQQLR 145 (355)
T ss_pred CCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEEE------------ECC--CCCCCCCHHHHHHHHHHHH
T ss_conf 88998999999981986875819999999863517994699999------------079--8778988578999999998
Q ss_pred --HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE--
Q ss_conf --3149606653056566614789999999998986508875087533776664455680789999998754216504--
Q gi|254780741|r 154 --EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQI-- 229 (367)
Q Consensus 154 --~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l-- 229 (367)
....+.|+-.|..+- .+.+...+.++...+....+......-|=+|-+..+...++. ++-=..-|+..-
T Consensus 146 ~~~~l~~~gi~SHfa~a-d~~~~~~~Q~~~F~~~~~~l~~~~~lanSa~~l~~p~~~~d~------vR~Gi~lYG~~p~~ 218 (355)
T PRK03646 146 AMGNVGEMTLMSHFARA-DHPDGISEAMARIEQAAEGLECERSLSNSAATLWHPQAHSDW------VRPGIILYGASPSG 218 (355)
T ss_pred HCCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCE------EEEEEEEECCCCCC
T ss_conf 48998758999862457-880679999999999972678665452879997898567974------63237835688664
Q ss_pred EEEHHHH-CCCCCEEEEEEEEEEECC-CCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCC-----CEEEEEECCC
Q ss_conf 5300220-145741888788786304-4333433335------6565664001345530002478-----6459986233
Q gi|254780741|r 230 YLEPGEA-IVTNTTTLNTTVLDISEN-IKNLVIVDSS------VEAHVPDYLLYQESATIYPNTG-----PYTAMVCGRS 296 (367)
Q Consensus 230 ~iEPGR~-lv~~ag~lv~~V~~~K~~-~~~~v~vd~g------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~G~~ 296 (367)
..+|... -.-+++.+-++|+.+|+= ....+.-++. +..-+-|..|..=++....+.+ ...+-|+|..
T Consensus 219 ~~~~~~~~~LkPvmsl~a~i~~vk~l~~G~~VgYg~t~~a~~~~~ia~vpiGYaDG~~R~~sn~~~V~i~G~~~pivGrI 298 (355)
T PRK03646 219 QWRDIANTGLRPVMTLSSEIIGVQTLPAGERVGYGGRYTARREQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTRTVGTV 298 (355)
T ss_pred CCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCEEEEEECEE
T ss_conf 44444234772208999999999981689954678752424756999984041356343357997899999995476776
Q ss_pred CCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf 36664552135-66778879899996887
Q gi|254780741|r 297 CLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367)
Q Consensus 297 C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367)
|+ |.+.-+. ..|+.++||.+.+..-.
T Consensus 299 ~M--D~~~vDvt~~~~~~~Gd~V~l~G~~ 325 (355)
T PRK03646 299 SM--DMLAVDLTPCPQAGIGTPVELWGKE 325 (355)
T ss_pred CC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 45--5689988899878999999998999
No 33
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.50 E-value=2.4e-10 Score=87.77 Aligned_cols=291 Identities=16% Similarity=0.136 Sum_probs=167.7
Q ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECC
Q ss_conf 68977999999999999985336986999541059----999999998518-7489807999989873-68801088537
Q gi|254780741|r 6 YYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNV 79 (367)
Q Consensus 6 ~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~ 79 (367)
..=.|.+.|+.|++.+++... ++.+++--+|||. ...|.+.+.+.| ++|-|+++.|....++ |......++++
T Consensus 3 ~~eIdl~al~~N~~~lr~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g~~~~Ilvl~~ 81 (367)
T cd00430 3 WAEIDLDALRHNLRVIRRLLG-PGTKIMAVVKADAYGHGAVEVAKALEEAGADYFAVATLEEALELREAGITAPILVLGG 81 (367)
T ss_pred EEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC
T ss_conf 999819999999999998568-9986999996554657789999999987979999854999999997299998599668
Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf 7780347886138868985672059999998612345--6148996357744310124557864357427888874----
Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---- 153 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---- 153 (367)
.. ++++..+.++....++.|.++++.+.+.++..+. +|-|-|| || .+|+|+..+++.+.
T Consensus 82 ~~-~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~~~~l 146 (367)
T cd00430 82 TP-PEEAEEAIEYDLTPTVSSLEQAEALSAAAARLGKTLKVHLKID------------TG--MGRLGFRPEEAEELLEAL 146 (367)
T ss_pred CC-HHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEE------------CC--CCCCCCCHHHHHHHHHHH
T ss_conf 99-7999999961807687869999999999887599823999980------------68--875788979999999999
Q ss_pred ---HHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHH---HHHCCCCCEEEEECC---CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ---31496066530565666-147899999999989---865088750875337---76664455680789999998754
Q gi|254780741|r 154 ---EIKNVNGLMFHNNCENK-SFLCFSAMLKNIEKE---FGHFITQIEWISLGG---GIHFTDKDYPVKDFCQRLKEFSE 223 (367)
Q Consensus 154 ---~~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~---~~~~~~~l~~idiGG---G~~~~~~~~~~~~~~~~i~~~~~ 223 (367)
....+.|+-.|..+-.. +.+.-.+.++...+. +.+.+....++.+.- =+..+...+++ ++-=..
T Consensus 147 ~~~~~l~~~gi~SHla~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~aNS~~~l~~~~~~~d~------vRpGi~ 220 (367)
T cd00430 147 KALPGLELEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRFPEAHFDM------VRPGIA 220 (367)
T ss_pred HHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCE------EECCEE
T ss_conf 86899618899740235788770788999999999999998648997637601689777395003880------601654
Q ss_pred HCCCEEEE-EHHHHCCCCCEEEEEEEEEEECC-CCC-------C--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21650453-00220145741888788786304-433-------3--------4333356565664001345530002478
Q gi|254780741|r 224 KYSVQIYL-EPGEAIVTNTTTLNTTVLDISEN-IKN-------L--------VIVDSSVEAHVPDYLLYQESATIYPNTG 286 (367)
Q Consensus 224 ~~~~~l~i-EPGR~lv~~ag~lv~~V~~~K~~-~~~-------~--------v~vd~g~~~~~~~~~~~~~~~~~~~~~~ 286 (367)
-|+..-.- .+-..-.-++..+-++|+.+++- ... | +++..|-.+-++-.+.. .-.+.. .
T Consensus 221 LYG~~p~~~~~~~~~Lkpv~~l~a~ii~ir~v~~G~~VGYg~~~~a~~~~~ia~v~iGYaDG~pr~~~~-~~~v~i---~ 296 (367)
T cd00430 221 LYGLYPSPEVKSPLGLKPVMSLKARVVQVKTVPAGEGVSYGRTYTAPRPTRIATLPVGYADGYPRALSN-KGEVLI---R 296 (367)
T ss_pred EECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCC-CCEEEE---C
T ss_conf 426888734455668621079999999989718979234899403587834899711122564510268-868999---9
Q ss_pred CEEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf 645998623336664552135-66778879899996887
Q gi|254780741|r 287 PYTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367)
Q Consensus 287 ~~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367)
...+.|.|..|+ |.+.-+. ..|+.++||.+.+..-.
T Consensus 297 g~~~~ivGrvsM--D~~~vdvt~~~~~~~Gd~V~l~G~~ 333 (367)
T cd00430 297 GKRAPIVGRVCM--DQTMVDVTDIPDVKVGDEVVLFGRQ 333 (367)
T ss_pred CEEEEEEEEEEC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 999256337505--5489988899889999999998189
No 34
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.50 E-value=3.2e-10 Score=86.96 Aligned_cols=288 Identities=14% Similarity=0.083 Sum_probs=163.2
Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH----HHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECCCCC
Q ss_conf 97799999999999998533698699954105999----99999985187489807999989873-68801088537778
Q gi|254780741|r 8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAW----GMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNVAYK 82 (367)
Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~----~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~~~~ 82 (367)
..|.+.|++|++.+++.. ++.+++=-+|||..= .|.+.+.+ -++|-|++..|....++ |.....+++++...
T Consensus 5 eIdl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~-~~~faVa~~~Ea~~LR~~g~~~~IlvL~g~~~ 81 (354)
T cd06827 5 TIDLAALRHNLRLVRELA--PNSKILAVVKANAYGHGLVRVAKALAD-ADGFAVACIEEALALREAGITKPILLLEGFFS 81 (354)
T ss_pred EEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHC-CCEEEEEEHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 997999999999999768--998399999846364869999999856-99799948999999997399986699937899
Q ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-------H
Q ss_conf 034788613886898567205999999861234561489963577443101245578643574278888743-------1
Q gi|254780741|r 83 DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-------I 155 (367)
Q Consensus 83 ~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-------~ 155 (367)
++|+..+.++....++.|.++++.+.+.....+.+|-|-| +|| .+|+|+..+++.+.. .
T Consensus 82 ~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~vhlki------------DTG--M~RlG~~~~e~~~~~~~l~~~~~ 147 (354)
T cd06827 82 ADELPLAAEYNLWTVVHSEEQLEWLEQAALSKPLNVWLKL------------DSG--MHRLGFSPEEYAAAYQRLKASPN 147 (354)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 8999999984998999989999999862848995499997------------578--88578998999999999985899
Q ss_pred CCCEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-EE-EE
Q ss_conf 4960665305656-661478999999999898650887508753377666445568078999999875421650-45-30
Q gi|254780741|r 156 KNVNGLMFHNNCE-NKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ-IY-LE 232 (367)
Q Consensus 156 ~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~-iE 232 (367)
..+.|+-.|..+- ..+...-.+.++...+....+......-|=+|=+..+...++. ++-=..-|+.. .- ..
T Consensus 148 l~~~gi~SHfa~AD~~~~~~t~~Q~~~F~~~~~~~~~~~h~aNSa~~l~~~~~~~d~------VR~Gi~lYG~~P~~~~~ 221 (354)
T cd06827 148 VASIVLMTHFACADEPDSPGTAKQLAIFEQATAGLPGPRSLANSAAILAWPEAHGDW------VRPGIMLYGASPFADKS 221 (354)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCHHHHCCCCCCCCE------ECCCEEEECCCCCCCCC
T ss_conf 856899840245788887899999999999971488666671788774595224772------34674615688776666
Q ss_pred HHHHCCCCCEEEEEEEEEEECC--C------CCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
Q ss_conf 0220145741888788786304--4------333--------43333565656640013455300024786459986233
Q gi|254780741|r 233 PGEAIVTNTTTLNTTVLDISEN--I------KNL--------VIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRS 296 (367)
Q Consensus 233 PGR~lv~~ag~lv~~V~~~K~~--~------~~~--------v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~ 296 (367)
+-..=.-++..+-++|+.+|+- | ..| +++..|-.+-++-.+... -.+.. ....+-|.|..
T Consensus 222 ~~~~~Lkpv~sl~a~v~~vk~v~~G~~VgYg~t~~a~~~~~iA~vpiGYaDG~~R~~s~~-~~V~i---~G~~~pivGrI 297 (354)
T cd06827 222 GADLGLKPVMTLSSEIIAVRELKAGESVGYGATWTAPRPMRIGVVAIGYGDGYPRHAPSG-TPVLV---NGQRTPLVGRV 297 (354)
T ss_pred CCCCCCEEEEEEEEEEEEEEECCCCCCEECCCCEECCCCCEEEEEEEECCCCCCCCCCCC-CEEEE---CCEEEEEECEE
T ss_conf 545585465899998457897699992316974113667359998304114635315799-78999---99997765675
Q ss_pred CCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf 36664552135-66778879899996887
Q gi|254780741|r 297 CLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367)
Q Consensus 297 C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367)
|+ |.+.-+. ..|+.++||.+.+..-+
T Consensus 298 ~M--D~~~vDvt~~~~~~~GD~V~l~G~~ 324 (354)
T cd06827 298 SM--DMLTVDLTDLPEAKVGDPVELWGKG 324 (354)
T ss_pred EC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 05--3589988899778999999996899
No 35
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.50 E-value=6.8e-11 Score=91.39 Aligned_cols=318 Identities=16% Similarity=0.072 Sum_probs=175.8
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC---CEEEEECHHHHH-HHHCCCCC--CCE
Q ss_conf 888568977999999999999985336986999541059999999998518---748980799998-98736880--108
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM---DGTTSSSLYEVM-LGHEKFGG--ETH 75 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g---~g~dv~S~~E~~-la~~g~~~--~~i 75 (367)
|+||+.|+|.+.+++|+++++......++++.==+||--.+.+.+..-+.| .|+-|+.+.|++ ++..|+.+ ..|
T Consensus 4 l~TPallvd~~~l~~Ni~~M~~~~~~~gv~lRPH~KTHKs~~ia~~Ql~aG~~a~git~atv~EAe~~a~~G~~~~~~di 83 (389)
T cd06817 4 LPTPALVIDRAKFKRNCERMLQRAKALGVKFRPHVKTHKTLEGTRLQLGEGRPSRGIVVSTLAEAEFLLPLGEEGRVDDI 83 (389)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHCCCEEE
T ss_conf 89973998199999999999999987599571151765169999999977998353897579999999985451662289
Q ss_pred EE-CCCCCHH--HHHHHHCCC--CEEEECCCHHHHHHHHHHH-CCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 85-3777803--478861388--6898567205999999861-23456--148996357744310124557864357427
Q gi|254780741|r 76 AY-NVAYKDC--EIDAVLSNC--DTIIFNTVSQLNKFKDKAQ-KLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKC 147 (367)
Q Consensus 76 ~~-~~~~~~~--el~~a~~~~--~~i~iDs~~El~~i~~~a~-~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~ 147 (367)
.+ +|...++ .+.++.+.. -.+.+||.+.++.+.+.+. ..+.+ |.|-||.+ ..|-|+..
T Consensus 84 l~a~pv~~~kl~rl~~L~~~~~~l~v~VD~~~~v~~L~~~~~~~~g~~l~V~Ievd~G--------------~~RtGv~~ 149 (389)
T cd06817 84 LYGLPVPPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVDCG--------------THRAGVPP 149 (389)
T ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCC--------------CCCCCCCC
T ss_conf 9888578789999999855398089997479999999999886269825899997889--------------89678898
Q ss_pred --HH---HHH----H-HHCCCEEEEECCCC--CCCCHHHHHHH--------HHHHHHHHHHCCCCCEEEEECCCCCCCC-
Q ss_conf --88---887----4-31496066530565--66614789999--------9999989865088750875337766644-
Q gi|254780741|r 148 --KD---KIE----S-EIKNVNGLMFHNNC--ENKSFLCFSAM--------LKNIEKEFGHFITQIEWISLGGGIHFTD- 206 (367)
Q Consensus 148 --~~---~~~----~-~~~~i~Gih~H~gs--~~~~~~~~~~~--------l~~~~~~~~~~~~~l~~idiGGG~~~~~- 206 (367)
++ +.+ . ...++.|||.|-|- +..+.+..++. ...+..+....+.....+-.||- |...
T Consensus 150 ~~~~~~~l~~~i~~~~~~L~~~Gl~~y~Gh~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~vvs~G~T-pt~~~ 228 (389)
T cd06817 150 ESEDAKELIQKLEKASEAVELFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRKLTLSVGAT-PTAHA 228 (389)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCCC
T ss_conf 83999999999985678835778860487555789999999999999999999999988626998758998588-87220
Q ss_pred -CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCC--------------CEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf -5568078999999875421650453002201457--------------4188878878630443334333356565664
Q gi|254780741|r 207 -KDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTN--------------TTTLNTTVLDISENIKNLVIVDSSVEAHVPD 271 (367)
Q Consensus 207 -~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~--------------ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~ 271 (367)
..... ... ...+....+-||.|+.-| |...+++|+.+. ..++++++|+|.-.+-.+
T Consensus 229 ~~~~~~-~~~-------~~~~~~tEl~pG~Yvf~D~~~~~~g~~~~~~~Al~VlatViS~~-p~~~~~ilDaG~Kals~D 299 (389)
T cd06817 229 AEALVL-IPA-------PSLSGLLELHAGNYPFYDLQQVATGLCSEEDIAVFVLAEVISVY-PKRNEALVNAGVLALSRE 299 (389)
T ss_pred CCCCCC-CCC-------CCCCCCEEEECCCEECCCHHHHHCCCCCCCCEEEEEEEEEEEEC-CCCCEEEECCCHHHEECC
T ss_conf 355442-245-------55565149702464726887851699983212589999998553-899839976660011035
Q ss_pred CCCCC----CCCCCCC-CCCCEEEEEECCCCCCCCEEEE---CCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE
Q ss_conf 00134----5530002-4786459986233366645521---35667788798999968870223243476899887799
Q gi|254780741|r 272 YLLYQ----ESATIYP-NTGPYTAMVCGRSCLAGDIFGE---FHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA 343 (367)
Q Consensus 272 ~~~~~----~~~~~~~-~~~~~~~~v~G~~C~~~D~l~~---~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v 343 (367)
.-... ......+ -.+...+.+.+. -+++-++.. .....++++||.|-+..-=+ | +..|.+ +..+
T Consensus 300 ~g~~~~~~g~~~~~~~~~~~~~~~~v~~l-seEHg~l~~~~~~~~~~~l~vGd~v~~iP~H~-C----~Tvnl~--~~~~ 371 (389)
T cd06817 300 PSRIYGGFGRVIPWPGPIPGHPEWYLVRL-SQEHGILQPRDGDLDFKRLKVGSKVRIIPQHA-C----ITAAMF--PVYY 371 (389)
T ss_pred CCCCCCCCCEECCCCCCCCCCCCEEEECC-CCCEEEEECCCCCCCCCCCCCCCEEEEECCCC-C----CCCCCC--CEEE
T ss_conf 67777885442167776467997288343-57515786178765567999888899971885-9----070058--8799
Q ss_pred EEECCCCE
Q ss_conf 99679909
Q gi|254780741|r 344 VKNVDGTI 351 (367)
Q Consensus 344 ~~~~~g~~ 351 (367)
++++++.+
T Consensus 372 vv~~~~~v 379 (389)
T cd06817 372 VVDSGDIV 379 (389)
T ss_pred EEECCCEE
T ss_conf 99798999
No 36
>PRK00053 alr alanine racemase; Reviewed
Probab=99.47 E-value=3.2e-10 Score=86.92 Aligned_cols=295 Identities=16% Similarity=0.131 Sum_probs=165.4
Q ss_pred CEEE-EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEE
Q ss_conf 5689-779999999999999853369869995410599----99999998518-7489807999989873-688010885
Q gi|254780741|r 5 PYYL-IDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAY 77 (367)
Q Consensus 5 P~yv-~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~ 77 (367)
|.|+ .|.+.|++|++.+++... +.+++--+|||.. ..|.+.+.+.| +.|-|+++.|....++ |......++
T Consensus 3 ~t~~eIdl~al~~N~~~i~~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EAi~LR~~g~~~~Ilvl 80 (360)
T PRK00053 3 PAWAEIDLDALAHNLRQLRQLAG--SSKLMAVVKANAYGHGAVEVAKTLLEAGADGFGVATLEEALELREAGITAPILLL 80 (360)
T ss_pred CEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf 77999839999999999996589--9809999944225488999999999879799999189999999963999998997
Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf 3777803478861388689856720599999986123456148996357744310124557864357427888874----
Q gi|254780741|r 78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---- 153 (367)
Q Consensus 78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---- 153 (367)
++.. ++++..+.++.-..++.|.++++.+.+.+...+.+|-|-|+ || .+|+|+..+++.+.
T Consensus 81 ~~~~-~~~~~~~~~~~l~~~i~s~~~l~~~~~~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~~~~i 145 (360)
T PRK00053 81 GGFF-EADLPLIVAYDIETAVHSLEQLRALEKAALSAPLKVHLKVD------------TG--MHRLGVRPEEAEAALERL 145 (360)
T ss_pred CCCC-HHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEEEEEC------------CC--CCCCCCCHHHHHHHHHHH
T ss_conf 6999-79999999759889999899999999746158954999985------------89--874788878999999999
Q ss_pred ---HHCCCEEEEECCCCC-CCCHHHHHHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf ---314960665305656-6614789999999998986508---875087533776664455680789999998754216
Q gi|254780741|r 154 ---EIKNVNGLMFHNNCE-NKSFLCFSAMLKNIEKEFGHFI---TQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYS 226 (367)
Q Consensus 154 ---~~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~~~~~~---~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~ 226 (367)
...+++|+--|..+. ..+.+...+.++...+....+. .....-|=+|=+..+...+++ ++-=..-|+
T Consensus 146 ~~~~~l~~~gi~SHla~AD~~~~~~~~~Q~~~F~~~~~~l~~~~~~~h~aNSag~l~~~~~~~d~------VR~Gi~lYG 219 (360)
T PRK00053 146 RALPNLRLEGIMSHFATADEPDNSYTDEQLARFKAFLAGLPGKGKVRHLANSAAILRWPDLHFDW------VRPGIALYG 219 (360)
T ss_pred HHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHCCHHHHCCCCCCCCE------ECCCCEEEC
T ss_conf 85899827899741124788885899999999999998631079698642369877097334771------523801027
Q ss_pred CEEE--EEHHHHCCCCCEEEEEEEEEEEC-CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCC-----CCEEEEE
Q ss_conf 5045--30022014574188878878630-44333433335------656566400134553000247-----8645998
Q gi|254780741|r 227 VQIY--LEPGEAIVTNTTTLNTTVLDISE-NIKNLVIVDSS------VEAHVPDYLLYQESATIYPNT-----GPYTAMV 292 (367)
Q Consensus 227 ~~l~--iEPGR~lv~~ag~lv~~V~~~K~-~~~~~v~vd~g------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v 292 (367)
..=. ......=.-++..+-++|+.+|+ .....+.-+.. +..-+-|..|..=++....+. ....+-|
T Consensus 220 ~~P~~~~~~~~~~lkpv~sl~a~I~~i~~v~~G~~VgYg~t~~a~~~~~ia~v~iGYaDG~~R~ls~~~~v~i~G~~~pi 299 (360)
T PRK00053 220 YSPSGEDLGLDLGLKPAMTLKSSLIAVRELKAGEGVGYGGTFTAERDTRIAVVPIGYADGYPRNLPNGTPVLVNGRRVPI 299 (360)
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEECCCCCEECCCCCEEEEEEEECCCCCCCCCCCCCEEEECCEEEEE
T ss_conf 98775544545586456999998005785279882437993145778369997103145634314799689999999588
Q ss_pred ECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf 623336664552135-66778879899996887
Q gi|254780741|r 293 CGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367)
Q Consensus 293 ~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367)
.|..|+ |.+.-+. ..|+.++||.+.+..-.
T Consensus 300 vGrv~M--D~~~vdvt~~~~~~~Gd~V~l~G~~ 330 (360)
T PRK00053 300 VGRVSM--DQLTVDLTDIPQVKVGDEVTLWGEA 330 (360)
T ss_pred ECEEEC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 478604--5389988899889999999998999
No 37
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.45 E-value=3.8e-10 Score=86.46 Aligned_cols=319 Identities=13% Similarity=0.079 Sum_probs=161.1
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH-HHHC-CEEEEECHHHHH-HHHCCCCCCCEEE-
Q ss_conf 88856897799999999999998533698699954105999999999-8518-748980799998-9873688010885-
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTL-NQYM-DGTTSSSLYEVM-LGHEKFGGETHAY- 77 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l-~~~g-~g~dv~S~~E~~-la~~g~~~~~i~~- 77 (367)
|+||+-|.|.+.+++|++++..... +..+--+.|+-.++.+++.+ ...| .|+-|.++.|+. ++..|++ .|..
T Consensus 9 l~tP~lvvDld~l~~Ni~~m~~~a~--g~~iR~~~Ks~k~~~l~~~~l~~~g~~Gi~~~~~~EA~~la~~G~~--DILl~ 84 (388)
T cd06813 9 LDAPFAFVDLDALDANAADLVRRAG--GKPIRVASKSVRCRALLRRVLAAPGFQGVMAFTLAEALWLARQGFD--DILVA 84 (388)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHC--CCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCC--CEEEC
T ss_conf 8997577539999999999999737--9981665040479999999986059870686559999999866998--18977
Q ss_pred CCCCCHHHHHH---HHCCCC--EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCCCCC-HHHH
Q ss_conf 37778034788---613886--89856720599999986123456148996357744310-12455786435742-7888
Q gi|254780741|r 78 NVAYKDCEIDA---VLSNCD--TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFI-LADPNRPFSRLGEK-CKDK 150 (367)
Q Consensus 78 ~~~~~~~el~~---a~~~~~--~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~-~~~~~~~~skfG~~-~~~~ 150 (367)
+|...+.-++. ..+... .+.+||.+.++.+.+.++..+.+ |||+-++..+-+. ....|.. |=|+. .+++
T Consensus 85 ~p~v~~~~l~~l~~~~~~~~~i~~~VD~~~~l~~l~~aa~~~g~~--l~V~ieiD~g~~r~G~~~G~~--RsgV~~~~~a 160 (388)
T cd06813 85 YPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRVE--VRVCIDIDASLRFGGLHFGVR--RSPLHTPAQA 160 (388)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCC--CCCCCCHHHH
T ss_conf 888899999999854423771799972888999999999865995--699999717876667414767--6888998999
Q ss_pred -------HHHHHCCCEEEEECCCC--CCCC--H---------HHHH--------HHHHHHHHHHHHCCCCCEEEEECC-C
Q ss_conf -------87431496066530565--6661--4---------7899--------999999989865088750875337-7
Q gi|254780741|r 151 -------IESEIKNVNGLMFHNNC--ENKS--F---------LCFS--------AMLKNIEKEFGHFITQIEWISLGG-G 201 (367)
Q Consensus 151 -------~~~~~~~i~Gih~H~gs--~~~~--~---------~~~~--------~~l~~~~~~~~~~~~~l~~idiGG-G 201 (367)
.+.....+.||+.|-|. +..+ . ...+ .....+.+.+.+.+..++++|-|| |
T Consensus 161 ~~La~~I~~~p~L~~~Glm~Yeghia~~~d~~~~~~~~~~~~~~~~~~s~~e~~~r~~~~v~al~~~g~~~~~VngGGTg 240 (388)
T cd06813 161 LALAKAIAARPGLRLVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAEGEDLEFVNGGGTG 240 (388)
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 99999986199974888972006556787655212456899999999999999999999999999619997589248976
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC----CCCCCCC
Q ss_conf -66644556807899999987542165045300220145741888788786304433343333565656----6400134
Q gi|254780741|r 202 -IHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHV----PDYLLYQ 276 (367)
Q Consensus 202 -~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~----~~~~~~~ 276 (367)
|.....+..+.++..- .-+ |....+=.+..+--.+|..+.+.|+. .....++++++|-..-. .+++..+
T Consensus 241 t~~~~~~~~~~tEv~aG-S~l---~~p~~fD~~~~~~~~PA~~~a~~Vv~--~P~p~~~t~~gGg~~aSg~~g~~~~p~p 314 (388)
T cd06813 241 SLESTAADAVVTEVTAG-SGL---YAPALFDHYRSFQPEPAAGFALPVVR--RPAPGIVTCLGGGYIASGPAGKDRLPVP 314 (388)
T ss_pred CEECCCCCCCCEEECCC-CEE---ECCHHCCCCCCCCCCCEEEEECCEEE--CCCCCEEEEECCCEEECCCCCCCCCCCC
T ss_conf 64123568852165554-579---84112032000587760788724783--3599879992897054357777787741
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf 553000247864599862333666455213566778879899996887022324347689988779999679
Q gi|254780741|r 277 ESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD 348 (367)
Q Consensus 277 ~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~ 348 (367)
.. |.. ..-..+-|.. +....+ .......+++||+|.|-.+=+= ..-.+| ..+++++++
T Consensus 315 ~~----p~g-~~~~~~eG~~-e~q~~l-~~~~~~~l~vGD~v~~rp~~~~--~~~~~f-----~~l~vv~gg 372 (388)
T cd06813 315 WL----PAG-LKLLPLEGAG-EVQTPL-TGPAAERLGIGDPVWFRHAKAG--ELCERF-----NELHLVRGG 372 (388)
T ss_pred CC----CCC-CCCCCCCCCC-CCCCEE-ECCCCCCCCCCCEEEEECCCCC--HHHHHC-----CEEEEEECC
T ss_conf 17----997-6544555787-642313-1587776999998999589733--666612-----869999899
No 38
>PRK13340 alanine racemase; Reviewed
Probab=99.36 E-value=3.5e-09 Score=80.10 Aligned_cols=290 Identities=16% Similarity=0.063 Sum_probs=161.4
Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCCC
Q ss_conf 9779999999999999853369869995410599----99999998518-748980799998987-36880108853777
Q gi|254780741|r 8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVAY 81 (367)
Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~~ 81 (367)
=.|.+.|+.|++.+++... ++++++=-+|||.. ..|.+.+.+.| ++|-|+++.|....+ .|......++++.
T Consensus 43 EIdL~al~~N~~~ir~~l~-~~~ki~AVVKAnAYGhG~~~va~~l~~~G~~~faVA~~~EAi~LR~~gi~~pIlvl~~~- 120 (404)
T PRK13340 43 EISRGALDFNIKKFKRRLA-ANSKVCAVMKADAYGHGIEGVMPTIIENNVPCIAIASNEEARRVRELGFTGPLLRVRSA- 120 (404)
T ss_pred EECHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEECC-
T ss_conf 9979999999999998569-99989999911102076999999999879999999499999999965999997999188-
Q ss_pred CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH---HHH------
Q ss_conf 80347886138868985672059999998612345614899635774431012455786435742788---887------
Q gi|254780741|r 82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD---KIE------ 152 (367)
Q Consensus 82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~---~~~------ 152 (367)
.++++..+.++.-..++.|.++++.+.+.++..++++.+-+. +++ ...+|+|+..++ +.+
T Consensus 121 ~~~~~~~~~~~~l~~~I~s~~~l~~l~~~a~~~~~~~~vHlk----------iDT-tGM~RlG~~~~~~~~~~~~~~i~~ 189 (404)
T PRK13340 121 EPAEIEQALRYRLEELIGDDEQAKLLANIAKKNGKPIDIHLA----------LNS-GGMGRNGLDPSTFRGAWEAVRIAT 189 (404)
T ss_pred CHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHCCCEEEEEE----------ECC-CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 989999999769925999799999999999971995479999----------816-886667988102899999999960
Q ss_pred HHHCCCEEEEECCCCCCCCH-----HHHHHHHHHHHHHHHHCCCCC---EEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 43149606653056566614-----789999999998986508875---0875337766644556807899999987542
Q gi|254780741|r 153 SEIKNVNGLMFHNNCENKSF-----LCFSAMLKNIEKEFGHFITQI---EWISLGGGIHFTDKDYPVKDFCQRLKEFSEK 224 (367)
Q Consensus 153 ~~~~~i~Gih~H~gs~~~~~-----~~~~~~l~~~~~~~~~~~~~l---~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~ 224 (367)
....+++|+--|..+-..+. +.|.+..+.+.+.. ...... ..-|=+|=+..+...+| .++-=..-
T Consensus 190 ~~~l~v~Gi~SHfa~AD~~~~~~q~~~F~~~~~~l~~~~-~~~~~~~~~H~aNSagil~~p~~~~D------~VRpGi~L 262 (404)
T PRK13340 190 LPSLGIVGIMTHFPNEDAGEVRWKLARFDQATQGLIGEA-GLKREKITLHVANSYATLNVPEAHLD------MVRPGGVL 262 (404)
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCHHHHCCCHHHCC------CCCCCCEE
T ss_conf 899777899820488999715999999999998678875-26788653998374887609331067------12677056
Q ss_pred CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCC-----CEEEEE
Q ss_conf 165045300220145741888788786304-433343------33356565664001345530002478-----645998
Q gi|254780741|r 225 YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVI------VDSSVEAHVPDYLLYQESATIYPNTG-----PYTAMV 292 (367)
Q Consensus 225 ~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~------vd~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v 292 (367)
|+ ..|...=.-+++.+-++|..+|.- ....+. .+..+..-+-|..|..=++....+.+ ...+.|
T Consensus 263 YG----~~P~~~~Lkpvmsl~a~I~~ir~v~~G~~VgYG~t~~a~~~~~iAtvpiGYADG~~R~lsn~g~VlI~G~~~pi 338 (404)
T PRK13340 263 YG----DSPANTPYKRIMTFKSRIASLNTLPKGSTVGYDRTFTLERDSRLANLPVGYADGYPRHAPNGGPVLINGQRAPV 338 (404)
T ss_pred EC----CCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEECCEEEEE
T ss_conf 68----89887787854899988778887079983144654024787489997211224524114798089999999125
Q ss_pred ECCCCCCCCEEEECC-CCCCCCCCCEEEEECC
Q ss_conf 623336664552135-6677887989999688
Q gi|254780741|r 293 CGRSCLAGDIFGEFH-FEKPVKIGDRISFEDV 323 (367)
Q Consensus 293 ~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~ 323 (367)
+|..|+ |.+.-+. ..|+.++||.+.+...
T Consensus 339 vGrI~M--D~~mVDvt~~~~v~~GD~V~L~G~ 368 (404)
T PRK13340 339 VGRVSM--NTLMVDVTDCPNVGPGDEVVLFGK 368 (404)
T ss_pred EEEEEC--CEEEEECCCCCCCCCCCEEEEECC
T ss_conf 618804--348998889988999999999789
No 39
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.34 E-value=1.8e-08 Score=75.49 Aligned_cols=272 Identities=17% Similarity=0.132 Sum_probs=163.6
Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCCC
Q ss_conf 9779999999999999853369869995410599----99999998518-748980799998987-36880108853777
Q gi|254780741|r 8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVAY 81 (367)
Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~~ 81 (367)
-.|.+.|+.|++.++.... ++++++=-+|||.. ..|.+.+.+.| +.+-|++..|...-+ +|......+++|.
T Consensus 466 EIdL~Ai~~N~~~~r~~l~-p~tkimaVVKAdAYGhGa~evAk~l~~~gvd~~aVA~~~Ea~~LR~~Gi~~pIlvl~~~- 543 (824)
T PRK11930 466 EINLDAIVHNLNYYRSKLK-PETKMMCMVKAFAYGAGSYEIAKTLQEHRVDYLAVAVADEGSELRKAGITLPIMVMNPE- 543 (824)
T ss_pred EEEHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCC-
T ss_conf 9988999999999997479-99769999963446634999999999849999999259999999974999987993486-
Q ss_pred CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC---CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf 80347886138868985672059999998612345---6148996357744310124557864357427888874-----
Q gi|254780741|r 82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK---KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----- 153 (367)
Q Consensus 82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~---~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----- 153 (367)
..++..++++.-...+-|+++++.+.+.++..+. +|-|-| +|| .+|+|+..+++.+.
T Consensus 544 -~~~~~~~~~~~l~~~v~s~~~l~~l~~~~~~~~~~~~~vHlki------------DTG--M~RlGf~~~e~~~l~~~l~ 608 (824)
T PRK11930 544 -LTSFKTIIDYKLEPEVYSFHLLDALIKEAEKKGLTNFPIHIKI------------DTG--MHRLGFEPEDIPELIERLK 608 (824)
T ss_pred -HHHHHHHHHHCCCCEECCHHHHHHHHHHHHHCCCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHH
T ss_conf -6779999980891107879999999999997299974089997------------599--9978599899999999998
Q ss_pred --HHCCCEEEEECCCC-CCCCHHHH-HHHHHHHHHH---HHHCCC-------------------CCEEEEECCCCCCCCC
Q ss_conf --31496066530565-66614789-9999999989---865088-------------------7508753377666445
Q gi|254780741|r 154 --EIKNVNGLMFHNNC-ENKSFLCF-SAMLKNIEKE---FGHFIT-------------------QIEWISLGGGIHFTDK 207 (367)
Q Consensus 154 --~~~~i~Gih~H~gs-~~~~~~~~-~~~l~~~~~~---~~~~~~-------------------~l~~idiGGG~~~~~~ 207 (367)
....++|+--|.-+ ...+.+.| .+.++...+. +.+.+. .++++-+|-|++.-.+
T Consensus 609 ~~~~l~~~gi~SHfa~aD~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~H~aNSagi~~~p~~~~DmVR~Gi~LYG~~p 688 (824)
T PRK11930 609 KQSAVIVRSVFSHLAGSDDPQHDDFTRQQIELFDKASEELQSALNYKPLRHILNTSGIERFPGAQYDMVRLGIGLYGVSA 688 (824)
T ss_pred HCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCEEEECCEEECCCC
T ss_conf 28998553667458888999985799999999999999998716887627860789886598446986852835168698
Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-------C-CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5680789999998754216504530022014574188878878630-------4-4333433335656566400134553
Q gi|254780741|r 208 DYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE-------N-IKNLVIVDSSVEAHVPDYLLYQESA 279 (367)
Q Consensus 208 ~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-------~-~~~~v~vd~g~~~~~~~~~~~~~~~ 279 (367)
. +...=.-+++.+-++|..+|+ + +.+|..-.. +..-+-|..|-.=++
T Consensus 689 ~------------------------~~~~~Lkpv~sl~s~I~~ik~v~~Ge~VgYg~t~~a~~~-~~IAtipiGYADG~~ 743 (824)
T PRK11930 689 S------------------------GNQIKLRNVSTLKTTILQIRDIPKGDTVGYSRKGRVEKP-SRIATIPIGYADGLN 743 (824)
T ss_pred C------------------------CCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEECCCC-CEEEEEEECCCCCCC
T ss_conf 8------------------------877796660899999999998385698679995582899-689999523102766
Q ss_pred CCCCCC------CCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECC
Q ss_conf 000247------86459986233366645521356677887989999688
Q gi|254780741|r 280 TIYPNT------GPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDV 323 (367)
Q Consensus 280 ~~~~~~------~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~ 323 (367)
....+. ..+.+-|+|..|+ |.+.-+...-+.++||.+++..-
T Consensus 744 R~lsn~~g~Vli~G~~~pivGrIcM--D~~mvDvt~i~~~~GDeV~l~G~ 791 (824)
T PRK11930 744 RHLGNGVGYVLVNGKKAPIVGNICM--DMCMIDVTDIHANEGDKVIIFGE 791 (824)
T ss_pred CCCCCCCCEEEECCEEEEEEEEEEC--CEEEEECCCCCCCCCCEEEEECC
T ss_conf 2257998389999999225648733--56999888998999999999899
No 40
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.34 E-value=1.8e-08 Score=75.37 Aligned_cols=283 Identities=13% Similarity=0.084 Sum_probs=156.5
Q ss_pred EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECCCCC
Q ss_conf 779999999999999853369869995410599----99999998518-7489807999989873-68801088537778
Q gi|254780741|r 9 IDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNVAYK 82 (367)
Q Consensus 9 ~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~~~~ 82 (367)
.|.+.|+.|++.++.... ++.+++--+|||.. ..|.+.+.+.| ++|-|+++.|....++ |.....+++++ ..
T Consensus 6 Idl~al~~N~~~ir~~~~-~~~ki~aVVKAnAYGhG~~~va~~l~~~gv~~faVa~~~EA~~LR~~g~~~~Il~l~~-~~ 83 (365)
T cd06826 6 ISTGAFENNIKLLKKLLG-GNTKLCAVMKADAYGHGIALVMPSIIAQNIPCVGITSNEEARVVREAGFTGKILRVRT-AT 83 (365)
T ss_pred EEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEECC-CC
T ss_conf 809999999999996389-9997999995620228789999999987999999687999999996599998799868-89
Q ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH---HH------HH
Q ss_conf 0347886138868985672059999998612345614899635774431012455786435742788---88------74
Q gi|254780741|r 83 DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD---KI------ES 153 (367)
Q Consensus 83 ~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~---~~------~~ 153 (367)
++|+..+.++....++-|.++++.+.++++..+.++.+-+. +++ ...+|+|+...+ +. +.
T Consensus 84 ~~e~~~~~~~~l~~~i~s~~~~~~l~~~~~~~~~~~~vhlk----------iDT-~GM~RlG~~~~~~~~~~~~~~~~~~ 152 (365)
T cd06826 84 PSEIEDALAYNIEELIGSLDQAEQIDSLAKRHGKTLPVHLA----------LNS-GGMSRNGLELSTAQGKEDAVAIATL 152 (365)
T ss_pred HHHHHHHHHCCCCCEECCHHHHHHHHHHHHHCCCCCEEEEE----------ECC-CCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 79999999706860998199999999999870998338999----------726-9977578673407899999999738
Q ss_pred HHCCCEEEEECCCCCCCCH-----HHHHHHHHHHHHHHHHCCCC-----CEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 3149606653056566614-----78999999999898650887-----5087533776664455680789999998754
Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSF-----LCFSAMLKNIEKEFGHFITQ-----IEWISLGGGIHFTDKDYPVKDFCQRLKEFSE 223 (367)
Q Consensus 154 ~~~~i~Gih~H~gs~~~~~-----~~~~~~l~~~~~~~~~~~~~-----l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~ 223 (367)
....+.|+..|..+...+. ..|.+..+.+ +.+.... +..-|=+|-+..+...++. ++-=..
T Consensus 153 ~~l~i~Gi~SH~a~ad~~~~~~~~~~f~~~~~~l---~~~~~~~~~~~~~H~anS~~~l~~~~~~~d~------vR~Gi~ 223 (365)
T cd06826 153 PNLKIVGIMTHFPVEDEDDVRAKLARFNEDTAWL---ISNAKLKREKITLHAANSFATLNVPEAHLDM------VRPGGI 223 (365)
T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH---HHHHCCCCCCCEEEECCCHHHHCCCCCCCCC------CCCCEE
T ss_conf 9985799983347889874099999999999999---9862677775618861436765594114784------557846
Q ss_pred HCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-CCCC---------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 216504530022014574188878878630-4433---------------343333565656640013455300024786
Q gi|254780741|r 224 KYSVQIYLEPGEAIVTNTTTLNTTVLDISE-NIKN---------------LVIVDSSVEAHVPDYLLYQESATIYPNTGP 287 (367)
Q Consensus 224 ~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-~~~~---------------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~ 287 (367)
-|+. .|-..=.-++..+-++|+.+|. .... .+++..|-.+-++-.+... -.+. -..
T Consensus 224 lYG~----~p~~~~lkpv~sl~s~I~~ir~l~~Ge~VGYg~~~~a~~~~~ia~v~iGYaDG~~r~~sn~-~~V~---i~G 295 (365)
T cd06826 224 LYGD----TPPSPEYKRIMSFKSRVASLNTYPKGSTVGYDRTFTLTRDSLLANIPVGYSDGYRRSFSNK-AHVL---ING 295 (365)
T ss_pred EECC----CCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCCC-CEEE---ECC
T ss_conf 3786----9777777834999999966478389997666862543898289997043325755002799-6899---999
Q ss_pred EEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECC
Q ss_conf 45998623336664552135-6677887989999688
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDV 323 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~ 323 (367)
..+-|.|..|+ |.+.-+. ..|+.++||.+++..-
T Consensus 296 ~~~pivGrV~M--D~~~vDvt~~~~v~~Gd~v~l~G~ 330 (365)
T cd06826 296 QRVPVVGKVSM--NTVMVDVTDIPGVKAGDEVVLFGK 330 (365)
T ss_pred EEEEEECEEEC--CEEEEECCCCCCCCCCCEEEEECC
T ss_conf 99357177722--268995678878999999999747
No 41
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.24 E-value=4.5e-08 Score=72.76 Aligned_cols=315 Identities=17% Similarity=0.153 Sum_probs=173.7
Q ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-
Q ss_conf 9888568977999999999999985336986999541059999999998518-74898079999898-73688010885-
Q gi|254780741|r 1 MIKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY- 77 (367)
Q Consensus 1 ~i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~- 77 (367)
.|+||+.+.|+++++.|+.+++......+.++.-=+|+-.+|.+.+..-+.| .|+-|+.+.|.+.. .+|+ +.|.+
T Consensus 15 ~l~tP~~liD~dr~~~Ni~r~qa~~~~~g~~lrph~KT~k~~~la~~ql~aGa~git~~tl~eae~~a~aGi--~dIl~a 92 (368)
T COG3616 15 DLDTPAALIDLDRLDGNIDRMQARADDHGVRLRPHVKTHKCPELARIQLDAGAWGITCATLGEAEVFADAGI--DDILLA 92 (368)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHCCCC--CCEEEE
T ss_conf 779964311288776369999986054483650123433587999999853773157610678899871586--525871
Q ss_pred CC-CCC-HHH-HHHHHCCCC--EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--
Q ss_conf 37-778-034-788613886--89856720599999986123456148996357744310124557864357427888--
Q gi|254780741|r 78 NV-AYK-DCE-IDAVLSNCD--TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK-- 150 (367)
Q Consensus 78 ~~-~~~-~~e-l~~a~~~~~--~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~-- 150 (367)
+| +.. ... |.+...... .+.+||.+.++.+.+.+.+.+..+ ||+-.++.+ ..|.|....+.
T Consensus 93 ~p~~~~~~~~~L~~l~~~~~~~~~~iDs~~~~~~l~~~~~~~~~pl--~v~iE~D~G----------~~R~Gv~t~~~~~ 160 (368)
T COG3616 93 YPLPGRAALAALAELLADPPRISVLIDSVEQLDALAALARDAGKPL--RVLIEIDSG----------LHRSGVRTPEVAE 160 (368)
T ss_pred CCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCE--EEEEEECCC----------CCCCCCCCHHHHH
T ss_conf 5887166899999851899842999578899999999987549974--699995788----------8866757868999
Q ss_pred -H-----HHHHCCCEEEEECCCCCCCCHHHHHHHH-HHHHHHHHHCCCCCEEEEECCCC--CCCC----------CCCCC
Q ss_conf -8-----7431496066530565666147899999-99998986508875087533776--6644----------55680
Q gi|254780741|r 151 -I-----ESEIKNVNGLMFHNNCENKSFLCFSAML-KNIEKEFGHFITQIEWISLGGGI--HFTD----------KDYPV 211 (367)
Q Consensus 151 -~-----~~~~~~i~Gih~H~gs~~~~~~~~~~~l-~~~~~~~~~~~~~l~~idiGGG~--~~~~----------~~~~~ 211 (367)
+ +.....+.|+.+|-|.-........... ..+..+.+..+....++--||== .... ..|..
T Consensus 161 ~La~~~~~~~~l~~~Gv~~y~gh~~~~~~~~~~~~~~~a~~~~~~~g~~~~~vt~ggtp~~~~~~~~~~~~e~r~G~Y~~ 240 (368)
T COG3616 161 ALAAEIAAAPGLRLAGVMTYPGHSYGPGSEVAAAERVHAAALLGAVGRAAPVLTSGGTPTAELVAGLSSTTELRAGNYVF 240 (368)
T ss_pred HHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHCCCCCCEEECCCCEEE
T ss_conf 99976520466078555303663467765333333556899740568766345327887322213577513651673342
Q ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE-E
Q ss_conf 789999998754216504530022014574188878878630443334333356565664001345530002478645-9
Q gi|254780741|r 212 KDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYT-A 290 (367)
Q Consensus 212 ~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 290 (367)
.+............++ ++...+.|++.- ...++++|+|.-..-++.... ..........+ .
T Consensus 241 ~D~~~~~~g~~s~~d~-------------Al~v~atvis~p--~~~~aivdaG~k~ls~D~~~~---~~~~~~~~g~~~~ 302 (368)
T COG3616 241 NDLVQVAFGIPSLSDG-------------ALTVAATVISHP--TPGRAIVDAGSKALSRDRPAA---RTGFGLGGGYEAA 302 (368)
T ss_pred HHHHHHHHCCCCCCCC-------------EEEEEEEEEECC--CCCEEECCCCCCCCCCCCCCC---CCCEEECCCCHHH
T ss_conf 1366666267751013-------------047767999648--886564057861000567767---6642440685432
Q ss_pred EEECC----CCCCCCEEEEC-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEEC
Q ss_conf 98623----33666455213-566778879899996887022324347689988779999679909999738
Q gi|254780741|r 291 MVCGR----SCLAGDIFGEF-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREF 357 (367)
Q Consensus 291 ~v~G~----~C~~~D~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e 357 (367)
.+.++ +-+.+=++... .....+++||++-|...=+= ..||.+ +.+.++++++ +++++
T Consensus 303 ~~~~~e~~~ln~ehg~~~~~~~~~~~l~vGd~v~i~PnH~c-----~t~~~f--~~~~v~~g~~---vi~~w 364 (368)
T COG3616 303 RVAAPEVMRLNEEHGTLSVQDPPADLLKVGDRVRLRPNHSC-----ATFNLF--DDLHVVRGGG---VVDRW 364 (368)
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCHH-----HHHHHC--CEEEEEECCC---EEEEE
T ss_conf 04632235613012699536776666888776996079624-----666634--7389985791---58886
No 42
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=99.23 E-value=7.7e-08 Score=71.24 Aligned_cols=289 Identities=16% Similarity=0.097 Sum_probs=157.9
Q ss_pred EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCCCC
Q ss_conf 779999999999999853369869995410599----99999998518-748980799998987-368801088537778
Q gi|254780741|r 9 IDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVAYK 82 (367)
Q Consensus 9 ~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~~~ 82 (367)
.|.+.|++|++.+++.. .++.+++=.+|||.. ..|.+.+.+.| ++|-|+++.|....+ .|......++++ ..
T Consensus 6 Idl~al~~N~~~i~~~~-~~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~f~Va~~~EA~~LR~~g~~~~Ilvl~~-~~ 83 (368)
T cd06825 6 IDLSALEHNVKEIKRLL-PSTCKLMAVVKANAYGHGDVEVARVLEQIGIDFFAVATIDEGIRLREAGIKGEILILGY-TP 83 (368)
T ss_pred EEHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECC-CC
T ss_conf 86999999999999747-99987999995642668899999999986989999919999999996299999899769-98
Q ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------HHC
Q ss_conf 03478861388689856720599999986123456148996357744310124557864357427888874------314
Q gi|254780741|r 83 DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------EIK 156 (367)
Q Consensus 83 ~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------~~~ 156 (367)
++++..+.+.....++-|+++++.+.+.. .+.+|-|-| +|| .+|+|+..+++... ...
T Consensus 84 ~~~~~~~~~~~l~~~i~s~~~~~~l~~~~--~~~~vhLki------------DTG--M~RlG~~~~e~~~~~~~~~~~~l 147 (368)
T cd06825 84 PVRAKELKKYSLTQTLISEAYAEELSKYA--VNIKVHLKV------------DTG--MHRLGESPEDIDSILAIYRLKNL 147 (368)
T ss_pred HHHHHHHHHCCCEEEECCHHHHHHHHHCC--CCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 78899999759989999699999997279--986079997------------079--98678887899999999867999
Q ss_pred CCEEEEECCCCCC-CCHH--HH-HHHHHHHHH---HHHHCCCCCEE---EEECCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9606653056566-6147--89-999999998---98650887508---7533776664455680789999998754216
Q gi|254780741|r 157 NVNGLMFHNNCEN-KSFL--CF-SAMLKNIEK---EFGHFITQIEW---ISLGGGIHFTDKDYPVKDFCQRLKEFSEKYS 226 (367)
Q Consensus 157 ~i~Gih~H~gs~~-~~~~--~~-~~~l~~~~~---~~~~~~~~l~~---idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~ 226 (367)
+++|+--|..+-. .+.+ .+ ++.++...+ .+.+.+..... -|=+|=+..+...+++ ++-=..-|+
T Consensus 148 ~~~gi~SH~a~AD~~~~~~~~~t~~Q~~~F~~~~~~l~~~~~~~~~~h~aNSagil~~p~~~~d~------vRpGi~LYG 221 (368)
T cd06825 148 KVSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGIEVGKIHIQSSYGILNYPDLKYDY------VRPGILLYG 221 (368)
T ss_pred CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCCCCCE------ECCCEEEEC
T ss_conf 54789853002566898335899999999999999998748984548742717876395024881------267346267
Q ss_pred CE--EEEE-HHHHCCCCCEEEEEEEEEEEC--CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCEE
Q ss_conf 50--4530-022014574188878878630--44------333433335656566400134553000247------8645
Q gi|254780741|r 227 VQ--IYLE-PGEAIVTNTTTLNTTVLDISE--NI------KNLVIVDSSVEAHVPDYLLYQESATIYPNT------GPYT 289 (367)
Q Consensus 227 ~~--l~iE-PGR~lv~~ag~lv~~V~~~K~--~~------~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~------~~~~ 289 (367)
.. ---. +...=.-+++.+-++|+.+|+ .| ..|. .+..+..-+-|..|..=++....+. ....
T Consensus 222 ~~~~~~~~~~~~~~LkPvmsl~a~I~~ir~v~~G~~VgYg~~~~-a~~~~~ia~v~iGYaDG~~R~lsn~~~~V~i~G~~ 300 (368)
T cd06825 222 VLSDPNDPTKLGLDLRPVLSLKAKVILVRKVAKGEAVGYGRLFV-ASRTTRIATVSIGYADGYPRSLSNQKAYVLINGKR 300 (368)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCEECCCCCCC-CCCCCEEEEEEEECCCCCCHHHCCCCCEEEECCEE
T ss_conf 88885434445668514699999954542069978453686334-67872799981141156342333797489999999
Q ss_pred EEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf 998623336664552135-66778879899996887
Q gi|254780741|r 290 AMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367)
Q Consensus 290 ~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367)
+-|+|..|+ |.+.-+. ..|+.++||.+.+....
T Consensus 301 ~pivGrV~M--D~~~vDvt~~~~v~~GD~V~l~G~~ 334 (368)
T cd06825 301 APIIGNICM--DQLMVDVTDIPEVKEGDTATLIGQD 334 (368)
T ss_pred EEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 577488714--5489989899889999999998289
No 43
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=6.5e-08 Score=71.75 Aligned_cols=292 Identities=19% Similarity=0.184 Sum_probs=166.1
Q ss_pred CCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCC-CCE
Q ss_conf 8568-9779999999999999853369869995410599----99999998518-7489807999989873-6880-108
Q gi|254780741|r 4 TPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGG-ETH 75 (367)
Q Consensus 4 TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~-~~i 75 (367)
.|.+ ..|.+.|+.|++.+++.... .+++=-+|||.. ..|.+.+.+.| ++|-|+++.|...-++ |... ...
T Consensus 3 ~~~~~~Idl~Al~~N~~~i~~~~~~--~~~~AVVKAnAYGhG~~~va~~l~~~g~~~f~VA~l~EAi~LR~~gi~~~~Il 80 (360)
T COG0787 3 RPATAEIDLGALRHNLRALRELAGP--AKLMAVVKANAYGHGAVRVAKALLDAGADGFGVASLEEAIELREAGITGAPIL 80 (360)
T ss_pred CCEEEEEEHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCEE
T ss_conf 7779998689999999999974788--57999996543677899999999985999899862999999997188899789
Q ss_pred EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-
Q ss_conf 853777803478861388689856720599999986123-456148996357744310124557864357427888874-
Q gi|254780741|r 76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKL-HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES- 153 (367)
Q Consensus 76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~-~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~- 153 (367)
++++...+++...+.++....++.|++|++.+...+... ..+|-|-+ ++| .+|+|+..++....
T Consensus 81 vL~g~~~~~~~~~~~~~~l~~~v~s~~ql~~l~~~~~~~~~l~vhLki------------DTG--M~RlG~~~~~~~~~~ 146 (360)
T COG0787 81 VLEGFFPAEELELAAAYNLTPVVNSLEQLEALKNAALKNKPLKVHLKI------------DTG--MNRLGLRPEEAVALA 146 (360)
T ss_pred EECCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHCCCCEEEEEEE------------CCC--CCCCCCCHHHHHHHH
T ss_conf 973758835678999869738889999999999755106962799997------------789--875798848999999
Q ss_pred ------HHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCCCHHHHHHHHHHHHHC
Q ss_conf ------31496066530565666-147899999999989865088750875337766-6445568078999999875421
Q gi|254780741|r 154 ------EIKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFITQIEWISLGGGIH-FTDKDYPVKDFCQRLKEFSEKY 225 (367)
Q Consensus 154 ------~~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~-~~~~~~~~~~~~~~i~~~~~~~ 225 (367)
....+.|+--|..+--. +.....+.++........+-.....+.=.+|+. .+...+++ ++-=..-|
T Consensus 147 ~~~~~~~~~~~~gi~SHfa~ADe~~~~~~~~Q~~~F~~~~~~~~~~~~h~aNSa~~~~~~~~~~d~------vRpGi~lY 220 (360)
T COG0787 147 IDLIALKNLDLEGIFSHFACADEPEDPYTLKQLERFNLAKQGLPGELSHLANSAGLLLGPDYHFDM------VRPGIALY 220 (360)
T ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHCCCCCCCCE------EECCEEEE
T ss_conf 987632487559997156778888982789999999998646987537885558770686422514------64001322
Q ss_pred CCEEEEEHHH---HCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC-----CEEE
Q ss_conf 6504530022---0145741888788786304-4333433335656------5664001345530002478-----6459
Q gi|254780741|r 226 SVQIYLEPGE---AIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEA------HVPDYLLYQESATIYPNTG-----PYTA 290 (367)
Q Consensus 226 ~~~l~iEPGR---~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~------~~~~~~~~~~~~~~~~~~~-----~~~~ 290 (367)
+ +.|=. .=.-+++.+-++|+++|+- -...|.-.+.+.. -+-|..|-.=++...++.. ...+
T Consensus 221 G----~~P~~~~~~~lkpvmtl~a~ii~vr~v~~Ge~VgYG~t~~a~~~t~iavv~iGYaDG~pR~~~~~~~Vli~G~r~ 296 (360)
T COG0787 221 G----LSPSGGLDNGLKPVMTLKARIIQVRTVPAGETVGYGATFTAERDTRIAVVAIGYADGYPRALSNGTPVLINGKRV 296 (360)
T ss_pred C----CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCCHHHCCCCCEEEECCEEE
T ss_conf 6----885656677853107999988899985799952477079825882689986334577420168997799999981
Q ss_pred EEECCCCCCCCEEEECC-CCCCCCCCCEEEEECC
Q ss_conf 98623336664552135-6677887989999688
Q gi|254780741|r 291 MVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDV 323 (367)
Q Consensus 291 ~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~ 323 (367)
-++|..|+ |.+.-+. ..|..++||.+.+..-
T Consensus 297 pivGrVsM--D~~~Vdl~~~~~~~~Gd~V~L~G~ 328 (360)
T COG0787 297 PIVGRVSM--DMIMVDLTDLPQVKVGDEVELFGE 328 (360)
T ss_pred EEEEEEEC--EEEEEECCCCCCCCCCCEEEEECC
T ss_conf 57638842--069998899877899999999899
No 44
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.22 E-value=5.9e-08 Score=72.01 Aligned_cols=306 Identities=13% Similarity=0.034 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEE-CCCCCHH---HHH
Q ss_conf 999999999985336986999541059999999998518-74898079999898-73688010885-3777803---478
Q gi|254780741|r 14 LLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAY-NVAYKDC---EID 87 (367)
Q Consensus 14 i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~-~~~~~~~---el~ 87 (367)
+++|+++++......++++.=-+||--.+.+.+..-+.| .|+-|+++.|++.. ..|+ +.|.+ +|...+. .+.
T Consensus 2 le~Ni~~m~~~~~~~g~~lRPH~KThK~~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G~--~dIl~a~pi~~~~~l~rl~ 79 (345)
T cd07376 2 LEANISRMAARARASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAGV--KDILMAYPLVGPAAIARLA 79 (345)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCC--CCEEEECCCCCHHHHHHHH
T ss_conf 78999999999997699766775000489999999867997099946999999997699--8389966889989999999
Q ss_pred HHHCCCC--EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH---------HHHHHHC
Q ss_conf 8613886--8985672059999998612345614899635774431012455786435742788---------8874314
Q gi|254780741|r 88 AVLSNCD--TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD---------KIESEIK 156 (367)
Q Consensus 88 ~a~~~~~--~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~---------~~~~~~~ 156 (367)
++.+... .+.+||.+.++.+.+.++..+.++.+.|.-+.+ ..|-|+...+ +.+....
T Consensus 80 ~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~~~V~ievD~G------------~~R~Gv~~~~~~~l~l~~~i~~~~~l 147 (345)
T cd07376 80 GLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG------------GHRSGVRPEEAAALALADAVQASPGL 147 (345)
T ss_pred HHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCC------------CCCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 986349838999708999999999998659827899997889------------98588888779999999998539991
Q ss_pred CCEEEEECCCC-C-CCCHHHHHHH----HHHHHHHHH--HCCCCCEEEEECCC-CC-CCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 96066530565-6-6614789999----999998986--50887508753377-66-64455680789999998754216
Q gi|254780741|r 157 NVNGLMFHNNC-E-NKSFLCFSAM----LKNIEKEFG--HFITQIEWISLGGG-IH-FTDKDYPVKDFCQRLKEFSEKYS 226 (367)
Q Consensus 157 ~i~Gih~H~gs-~-~~~~~~~~~~----l~~~~~~~~--~~~~~l~~idiGGG-~~-~~~~~~~~~~~~~~i~~~~~~~~ 226 (367)
++.||+.|-|. + ..+.+..++. +..+..... +.+.....+..||= .. .......+.++..----+. |
T Consensus 148 ~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vs~GgTpt~~~~~~~~~~tEl~~G~yvf~---D 224 (345)
T cd07376 148 RLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAERGLACPTVSGGGTPTYQLTAGDRAVTELRAGSYVFM---D 224 (345)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEEECCCEEEEC---C
T ss_conf 8989997471206999989999999999999999999986499988895578887410336887328746348964---2
Q ss_pred CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEE--
Q ss_conf 504530022014574188878878630443334333356565664001345530002478645998623336664552--
Q gi|254780741|r 227 VQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFG-- 304 (367)
Q Consensus 227 ~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~-- 304 (367)
. -....|-.=-.++...+++|+..- ....++++|+|.-.+-.+... .......+.+ . ..+.+.+ ++.-.+.
T Consensus 225 ~-~~~~~~~~~~~~aa~~v~~Vis~~-~~~~~~~vd~G~kals~d~~~-~~~~~~~~~p-~--~~~~~~s-~ehg~~~~~ 297 (345)
T cd07376 225 T-GFDTLGACAQRPAAFRVTTVISRP-APTGRAVLDAGWKASSADTAF-IGGGAVLGRP-E--LRAVLLS-EEHEGRSEP 297 (345)
T ss_pred H-HHCCCCCCCCCCEEEEEEEEEEEC-CCCCEEEECCCCCCCCCCCCC-CCCCCCCCCC-C--CEEEEEC-CCCCEEECC
T ss_conf 1-320136898433008998666522-888628988622222331356-7888755897-7--0255301-575304515
Q ss_pred -ECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf -13566778879899996887022324347689988779999679909
Q gi|254780741|r 305 -EFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTI 351 (367)
Q Consensus 305 -~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~ 351 (367)
......++++||.|.|...=+ |. .+|.+ +..++++ +|.+
T Consensus 298 ~~~~~~~~l~vGd~v~liP~H~-C~----t~~~~--~~~~vv~-~~~v 337 (345)
T cd07376 298 LNTPDLDDLPIGDRVFLVPNHA-CE----TVALH--DELYVVE-GGRV 337 (345)
T ss_pred CCCCCCCCCCCCCEEEEEECCC-CH----HHHHC--CEEEEEE-CCEE
T ss_conf 6677778999999999980885-37----77728--9899999-9999
No 45
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.19 E-value=1.9e-07 Score=68.73 Aligned_cols=289 Identities=15% Similarity=0.107 Sum_probs=170.3
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHHC-CEEEEECHHHHHHH-HCCCCCCCEEEC
Q ss_conf 88856897799999999999998533698699954105-9999999998518-74898079999898-736880108853
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF-AAWGMFDTLNQYM-DGTTSSSLYEVMLG-HEKFGGETHAYN 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN-~~~~il~~l~~~g-~g~dv~S~~E~~la-~~g~~~~~i~~~ 78 (367)
|+--.||.|.|++++|.+.+.......+.++||=.|-+ -||.+++.+.+.| .|+-++-.-|++.- +.|.+--.+-.=
T Consensus 26 I~PdtYViDlD~v~~NAr~l~~~A~~~gi~Ly~MtKQ~GRNP~l~~~l~~~G~~g~VaVD~kEA~~l~~~gl~vghvGHL 105 (382)
T cd06811 26 IPPDTYVIDLDQIEENARLLAETAEKYGIELYFMTKQFGRNPFLARALLEAGIPGAVAVDFKEARALHEAGLPLGHVGHL 105 (382)
T ss_pred CCCCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCCCCCCCC
T ss_conf 79886897589999999999999997396899996105899899999997399856896099999999859983441571
Q ss_pred CCCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH---
Q ss_conf 777803478861388-68985672059999998612345--614899635774431012455786435742788887---
Q gi|254780741|r 79 VAYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE--- 152 (367)
Q Consensus 79 ~~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~--- 152 (367)
-......+.+++... ..|++=|++....+.+.|.+.+. +|+|||- ...+.+.+|+.. |+..+++.+
T Consensus 106 VQiP~~~v~~iv~~~PeviTVfS~ekA~eis~aA~~~g~~Q~illrV~-----~~~D~~Y~GQeg---Gf~l~eL~~v~~ 177 (382)
T cd06811 106 VQIPRHQVPAVLAMRPEVITVYSLEKAREISDAAVELGRVQDVLLRVY-----GDEDTLYPGQEG---GFPLEELPAVLA 177 (382)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCCEEEEEE-----CCCCCCCCCCCC---CEEHHHHHHHHH
T ss_conf 368576899999749978999209999999999998197332699996-----489846377537---754899999999
Q ss_pred ----HHHCCCEEE-EECCC---CCCCCH--HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----431496066-53056---566614--78999999999898650887508753377666445568078999999875
Q gi|254780741|r 153 ----SEIKNVNGL-MFHNN---CENKSF--LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS 222 (367)
Q Consensus 153 ----~~~~~i~Gi-h~H~g---s~~~~~--~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~ 222 (367)
....+|.|+ ||=+- .+.... ..=-..+..+.+++++.+.+..-+|..+- +-+.. -...
T Consensus 178 ~i~~l~gi~i~GvT~FPc~L~d~~~~~~~pT~N~~Tl~~A~~~L~~~G~~~~qvN~PSa-----------Ts~~t-lp~L 245 (382)
T cd06811 178 AIKALPGIRIAGLTSFPCFLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAPSA-----------TSCAT-LPLL 245 (382)
T ss_pred HHHHCCCCEEEEEECEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC-----------CHHHH-HHHH
T ss_conf 99728996796643200687747779511585299999999999975986279506851-----------14765-9999
Q ss_pred HHCCCEEEEEHHHHCCC-------------CCEEEEEEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42165045300220145-------------74188878878630443334333356--5656640013455300024786
Q gi|254780741|r 223 EKYSVQIYLEPGEAIVT-------------NTTTLNTTVLDISENIKNLVIVDSSV--EAHVPDYLLYQESATIYPNTGP 287 (367)
Q Consensus 223 ~~~~~~l~iEPGR~lv~-------------~ag~lv~~V~~~K~~~~~~v~vd~g~--~~~~~~~~~~~~~~~~~~~~~~ 287 (367)
++++.+= .|||-+|.+ .|+++|++|=..- +++-|+ --||. ..|+..++.+.. ....
T Consensus 246 a~~G~Th-~EPGHaLTGTtP~ha~~d~pE~pA~vYvSEISH~~-~g~sY~-yGGG~YrR~hl~~ALV~~~------~~~~ 316 (382)
T cd06811 246 AEYGVTH-GEPGHALTGTTPLHAVGDQPEKPAMVYVSEVSHTF-GGHSYC-YGGGFYRRSHLKNALVGTD------PDDA 316 (382)
T ss_pred HHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEC-CCCEEE-ECCCCCCCCCCCCEEECCC------CCCH
T ss_conf 9848866-78874124788554567788761399998645742-895587-5886654666333255168------2322
Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf 459986233366645521356677887989999
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISF 320 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i 320 (367)
....|--+.-++-|+-..-. -+...+||.+++
T Consensus 317 ~~~~v~~~~~~sIDYy~~l~-~~~~~vGdtVi~ 348 (382)
T cd06811 317 SAHRAELLDPENIDYYGTLD-GPEFAVGDTVIM 348 (382)
T ss_pred HHEECCCCCCCCEEEEEECC-CCCCCCCCEEEE
T ss_conf 11323579977620677528-987898880899
No 46
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.14 E-value=2.1e-07 Score=68.44 Aligned_cols=152 Identities=15% Similarity=0.069 Sum_probs=94.5
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHH-HC-CEEEEECHHHHHHHHCCCCCCCEEE-C
Q ss_conf 8885689779999999999999853369869995410599999999985-18-7489807999989873688010885-3
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQ-YM-DGTTSSSLYEVMLGHEKFGGETHAY-N 78 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~-~g-~g~dv~S~~E~~la~~g~~~~~i~~-~ 78 (367)
|+||+-|.|.|.+++|++++..... .+..+.-+.|+-.++.+++.+-+ .| .|+-|.+..|+....+++....|.. +
T Consensus 7 i~tP~lvvDldal~~Ni~~m~~~~~-~~~~lRph~Ks~ks~~ll~~~~~~~g~~g~~~~~~~e~~~~~~~~~~~DiLl~~ 85 (379)
T cd06814 7 IGEPTLLLDKDRLDHNIDLLREHLA-GSLAYRIVAKSLPSPPLLRHIMKRAGTRRLMVFHQPFLNAVAKAFPDADILLGK 85 (379)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHC-CCCCCCCEECCCCCHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCEEECC
T ss_conf 8997699618999999999999756-899735350405799999999874598757882199999999747666489648
Q ss_pred CCCCHH---HHHHH----HCC--CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 777803---47886----138--868985672059999998612345614899635774431012455786435742---
Q gi|254780741|r 79 VAYKDC---EIDAV----LSN--CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK--- 146 (367)
Q Consensus 79 ~~~~~~---el~~a----~~~--~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~--- 146 (367)
|..... .+... ... ..++.+||.+.++.+.+.++..+.+ |||..++.. |. .|=|+.
T Consensus 86 p~~~~~~~~~~~~~~~~~~~~~~~i~~~VD~~~~l~~l~~~a~~~g~~--l~V~ieiDv--------G~--~R~Gv~~~~ 153 (379)
T cd06814 86 PMPVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGLT--LRINLELDV--------GL--HRGGFADPQ 153 (379)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCC--EEEEEEECC--------CC--CCCCCCCHH
T ss_conf 774078999998733100266561799983899999999999875981--689999678--------88--738878979
Q ss_pred -HHH----HHHHHHCCCEEEEECCC
Q ss_conf -788----88743149606653056
Q gi|254780741|r 147 -CKD----KIESEIKNVNGLMFHNN 166 (367)
Q Consensus 147 -~~~----~~~~~~~~i~Gih~H~g 166 (367)
..+ +......++.|++.+-|
T Consensus 154 ~a~~la~~I~~~~~l~l~Glm~Yeg 178 (379)
T cd06814 154 TLPKALTAIDAPPRLRFSGLMGYEP 178 (379)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEHH
T ss_conf 9999999997389977989851646
No 47
>pfam01168 Ala_racemase_N Alanine racemase, N-terminal domain.
Probab=99.09 E-value=5.1e-08 Score=72.40 Aligned_cols=176 Identities=19% Similarity=0.179 Sum_probs=112.3
Q ss_pred EEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CH---HHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECCCCCH
Q ss_conf 77999999999999985336986999541059-99---99999985187489807999989873-688010885377780
Q gi|254780741|r 9 IDKQKLLNNLDTALYIRKNAGVKLLLALKCFA-AW---GMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNVAYKD 83 (367)
Q Consensus 9 ~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~-~~---~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~~~~~ 83 (367)
.|.+.+++|++.++..... +.+++--+|+|. .. .+++.+.....++-|++..|+...++ +.+....+.+ ...+
T Consensus 1 Idl~~l~~Ni~~i~~~~~~-~~~l~aVvK~nayG~g~~~i~~~~~~g~~~f~v~~~~Ea~~lr~~~~~~~Il~l~-~~~~ 78 (216)
T pfam01168 1 IDLDALRHNIRALRERAGR-PVKLMAVVKANAYGHGAVRVARALAAGADGFGVATLQEALELREAGITAPILVLG-FFPP 78 (216)
T ss_pred CCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCEEEEC-CCCH
T ss_conf 9779999999999985699-9989999777777866999999998089855980099999999818987077736-8996
Q ss_pred HHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------HH
Q ss_conf 347886138868985672059999998612345--6148996357744310124557864357427888874------31
Q gi|254780741|r 84 CEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------EI 155 (367)
Q Consensus 84 ~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------~~ 155 (367)
+++..+.+.....++||.++++.+.+.++..+. +|.|-|| +| .+|+|++.+++.+. ..
T Consensus 79 ~~~~~~~~~~~~~~v~s~~~l~~l~~~~~~~~~~~~v~l~vd------------tG--m~R~G~~~~~~~~~~~~i~~~~ 144 (216)
T pfam01168 79 EELALAAEYDLIPTVDSLEQAEALSAAAAKLGRPLRVHLKVD------------TG--MGRLGFTPEELPALAEALALPG 144 (216)
T ss_pred HHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEE------------EC--CCCCCCCHHHHHHHHHHHHCCC
T ss_conf 999999985978997889999999999998599808999997------------47--8768879999999999985599
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 496066530565666147899999999989865088750875337
Q gi|254780741|r 156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGG 200 (367)
Q Consensus 156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG 200 (367)
.++.|+..|..+...........++.+.+..+.+......+.+|.
T Consensus 145 l~~~Gi~tH~~~~d~~~~~~~~q~~~f~~~~~~l~~~~~~~s~~n 189 (216)
T pfam01168 145 LRLEGLMTHFACADEPDATNRAQLARFRELADALEAAGPVLSLGN 189 (216)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEHHC
T ss_conf 967899950588789758999999999999998656899985116
No 48
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=99.03 E-value=2.7e-08 Score=74.26 Aligned_cols=302 Identities=17% Similarity=0.157 Sum_probs=173.2
Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC-CCHHHHHHHHHHCCEEEEECHH-HHH-HHHCCCCCCCEEE-CC
Q ss_conf 856897799999999999998533698699954105-9999999998518748980799-998-9873688010885-37
Q gi|254780741|r 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF-AAWGMFDTLNQYMDGTTSSSLY-EVM-LGHEKFGGETHAY-NV 79 (367)
Q Consensus 4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN-~~~~il~~l~~~g~g~dv~S~~-E~~-la~~g~~~~~i~~-~~ 79 (367)
-|-.+.|.++|++|.+.++..++..+.++++-.|.. -+|.+.+.+.+.|...=+.|-. |++ +..+|....-+.. +|
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P 82 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP 82 (353)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 87178768998876899999998739779998752058818999999658543430227889999975999675476265
Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-----
Q ss_conf 7780347886138868985672059999998612345--614899635774431012455786435742788887-----
Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----- 152 (367)
Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----- 152 (367)
..++ ++..++....+.+-+++-+..+.+.|.+.++ +|.|+|.-+ . ..+ +..+...+++.+
T Consensus 83 ~~se--i~~vv~~~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~--D-----lre----G~~~~~~~~l~~~V~eI 149 (353)
T COG3457 83 CMSE--IEDVVRKVDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYG--D-----LRE----GQWGFLIEDLEETVEEI 149 (353)
T ss_pred CHHH--HHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECC--C-----CCC----CCHHHHHHHHHHHHHHH
T ss_conf 2889--999987357689725899999999999827521699999835--6-----667----40244788889999999
Q ss_pred --HHHCCCEEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf --43149606653056566---6147899999999989865088750875337766644556807899999987542165
Q gi|254780741|r 153 --SEIKNVNGLMFHNNCEN---KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSV 227 (367)
Q Consensus 153 --~~~~~i~Gih~H~gs~~---~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~ 227 (367)
....++.||.+|.+|-. -..+.+...+....++-+..|..+++++=|---..+ -.+.-.+.. +.+
T Consensus 150 ~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~~~~lE~~~Gi~l~~vsagnats~~--~L~~~~~~~-inh------- 219 (353)
T COG3457 150 QQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQGKKKLEASSGIQLKQVSAGNATSLT--LLPMGSLPG-INH------- 219 (353)
T ss_pred HCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHH--HHHCCCCCC-CCC-------
T ss_conf 6699835986311665456767884048999999999877329505881279862033--201455225-555-------
Q ss_pred EEEEEHHHH--------------CCCCCEEEEEEEEEEECCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 045300220--------------1457418887887863044---------33343333565656640013455300024
Q gi|254780741|r 228 QIYLEPGEA--------------IVTNTTTLNTTVLDISENI---------KNLVIVDSSVEAHVPDYLLYQESATIYPN 284 (367)
Q Consensus 228 ~l~iEPGR~--------------lv~~ag~lv~~V~~~K~~~---------~~~v~vd~g~~~~~~~~~~~~~~~~~~~~ 284 (367)
+|||-+ +--+|+.+.++|..+|..- ++-..+|+|+..+---.+-.+........
T Consensus 220 ---lriG~al~~g~~~~n~~~~~~e~da~~lesEIie~k~k~s~~ige~f~~~~~f~d~g~~~rAi~aig~~dv~~~~~s 296 (353)
T COG3457 220 ---LRIGEALTGGVTPTNQYIDWLEQDAMLLESEIIEVKDKPSYPIGEGFYRRSGFVDAGIRLRAIAAIGEQDVDVVNLS 296 (353)
T ss_pred ---CCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf ---44452145361020110230035221011245521578861205421356665442034788777655247767886
Q ss_pred CCCEEEEEECCCCCCCCEE-EECCCCCCCCCCCEEEEECCC-CHHHHHCCCC
Q ss_conf 7864599862333666455-213566778879899996887-0223243476
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIF-GEFHFEKPVKIGDRISFEDVA-GYNINRKNWF 334 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D~l-~~~~~~~~l~~GD~l~i~~~G-AY~~~~~~~F 334 (367)
+-++...+.|.+ +|-+ .+.+.--.+.+||.+.|...= |-..+|.+.+
T Consensus 297 piD~~i~ilgas---SDhvvld~~~q~~v~vgDvv~fr~~y~~l~~am~~~~ 345 (353)
T COG3457 297 PIDYGIDILGAS---SDHVVLDFRDQIFVTVGDVVRFRLIYQGLLEAMYSKK 345 (353)
T ss_pred CHHHHHHHHCCC---CCCEEEEECCCCCCEEEEEEEEEECCCCCHHHHCCCC
T ss_conf 276654453246---7718999605643224028999842111014430234
No 49
>TIGR00492 alr alanine racemase; InterPro: IPR000821 Alanine racemase catalyses the pyridoxal-dependent conversion of L-alanine into D-alanine, a key component of bacterial peptidoglycan . In Escherichia coli and Salmonella typhimurium, there are two alanine racemase isoforms, alr is a biosynthetic form required for cell wall formation; and dadB functions in L-alanine catabolism. By contrast with dadB and alr, both of which are monomeric enzymes, the alanine racemase of Bacillaceae are homodimers. In Pseudomonas putida, a broad-specificity amino acid racemase is structurally and functionally related to alanine racemase. The 3D-structure of the dimeric alanine racemase from Bacillus stearothermophilus has been determined to a resolution of 1.9 A . Each monomer comprises two domains, with an eight-stranded alpha/beta barrel at the N-terminus, and a C-terminal beta-strand domain. In the dimer, the mouth of the alpha/beta barrel of one monomer faces the second domain of the other monomer. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the barrel mouth and is covalently linked via an aldimine linkage to Lys39. Several other residues are involved in anchoring the PLP, for example, Arg219 forms a hydrogen bond with the pyridine nitrogen of the cofactor, which is assumed to influence electron delocalisation in PLP-alanine intermediates; Arg136 donates a hydrogen bond to the phenolic oxygen of PLP, and may be involved in substrate binding and stabilisation of intermediates; and Tyr265' is postulated to be a 2 proton donor to the carbanion intermediate .; GO: 0008784 alanine racemase activity, 0006522 alanine metabolic process.
Probab=98.70 E-value=3.8e-05 Score=53.48 Aligned_cols=297 Identities=13% Similarity=0.068 Sum_probs=175.1
Q ss_pred EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC----HHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECCC
Q ss_conf 89779999999999999853369869995410599----99999998518-7489807999989873-688010885377
Q gi|254780741|r 7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAA----WGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNVA 80 (367)
Q Consensus 7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~----~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~~ 80 (367)
-..|.+.|++|++.+++... +..++.==||||.. ..|.+++.+.| +++-|+++.|..--++ |......++...
T Consensus 6 ~~id~~ALk~Nl~~~k~~~~-~~~~~~AVVKANAYGHG~~~~a~~~~~~Gad~lavA~LeEAi~LR~~G~~~PIL~Lg~~ 84 (383)
T TIGR00492 6 VEIDLAALKHNLSAIKKQIG-PKSKIMAVVKANAYGHGLIEVAKTLLQAGADYLAVATLEEAIELRKAGITAPILLLGGF 84 (383)
T ss_pred EEECHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCEEEEECC
T ss_conf 99926789999999997468-87569999814842601899999998658966400024677998854788757885047
Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HHHHHH---
Q ss_conf 78034788613886898567205999999861234--561489963577443101245578643574278-888743---
Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DKIESE--- 154 (367)
Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~~~~~--- 154 (367)
..++++..+.++--.-.+=|.++|+.+.+.....+ +++-+=++- |||+ .|+|+..+ +.....
T Consensus 85 ~~~~~~~~~~~~~l~~~v~s~Eql~~~~~~~lk~~sa~~l~vhlK~----------DTGM--~RLG~~~~f~~~~~~~~~ 152 (383)
T TIGR00492 85 FSAEDLKILAAWDLTTTVHSVEQLKALEEALLKEPSAKRLKVHLKI----------DTGM--NRLGVKPDFEEALFVQKL 152 (383)
T ss_pred CCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEE----------CCCC--CCCCCCCCHHHHHHHHHH
T ss_conf 9988999998618638980889999999984104478747899862----------3888--647888657899999999
Q ss_pred ----H-CCCEEEEECCCCCCCCH--HHHHHHHHHHHHHHHHCCC-------CCEEEEECCCCCCCCCC----CCCHHHHH
Q ss_conf ----1-49606653056566614--7899999999989865088-------75087533776664455----68078999
Q gi|254780741|r 155 ----I-KNVNGLMFHNNCENKSF--LCFSAMLKNIEKEFGHFIT-------QIEWISLGGGIHFTDKD----YPVKDFCQ 216 (367)
Q Consensus 155 ----~-~~i~Gih~H~gs~~~~~--~~~~~~l~~~~~~~~~~~~-------~l~~idiGGG~~~~~~~----~~~~~~~~ 216 (367)
. ..+.||--|.- ...++ ...+..++......+.+.. -...-|=||.+..+... +++-...=
T Consensus 153 ~~~~~~~~~~gi~sHfa-~AD~~~~~~~~~Q~~~F~~~~~~L~~~~i~~~~~~h~aNSaaiL~~~~~~enr~fd~vRpGI 231 (383)
T TIGR00492 153 RALSKLLELEGIFSHFA-TADEPKTTTTKKQIERFLSFLEGLKQQKIELIPFRHIANSAAILSLPEGHENRLFDMVRPGI 231 (383)
T ss_pred HHCCCCCCCCCEECCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCH
T ss_conf 83645643021121456-76772214799999999999851343686476335421017864453356664011442143
Q ss_pred HHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC--CCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC--
Q ss_conf 9998754216504530022014574188878878630--44333433335656------5664001345530002478--
Q gi|254780741|r 217 RLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE--NIKNLVIVDSSVEA------HVPDYLLYQESATIYPNTG-- 286 (367)
Q Consensus 217 ~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~--~~~~~v~vd~g~~~------~~~~~~~~~~~~~~~~~~~-- 286 (367)
-+-.+. +-.=+-+-=.+-.-+..+|-++|+.||. .|.+.|.--+-+.. -+-|..|-.=++.-.++..
T Consensus 232 iLYG~~---Ps~~~~~~~~~~L~PVlsL~s~i~~vr~~k~Ger~VsYG~~~~a~~d~~iGvva~GYaDG~pR~l~n~~~V 308 (383)
T TIGR00492 232 ILYGLY---PSADMKDGAPLGLKPVLSLKSKIIQVRTVKKGERPVSYGGTFTAEEDTKIGVVAIGYADGYPRALSNGTPV 308 (383)
T ss_pred HHHCCC---CCHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCEEEECCCCCEEEEEEECHHCCCHHHCCCCCEE
T ss_conf 532147---62001455434750312678999998740588974246724865787368999620024752115898679
Q ss_pred ---CEEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEEC
Q ss_conf ---645998623336664552135-667788798999968
Q gi|254780741|r 287 ---PYTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFED 322 (367)
Q Consensus 287 ---~~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~ 322 (367)
..+..++|..|+ |.++-+. ...+...||-|++..
T Consensus 309 L~~G~~~~~~G~V~M--D~~~V~L~~~~~~k~G~~Vil~G 346 (383)
T TIGR00492 309 LVNGKRVPIVGRVCM--DMLMVDLGPNLQAKTGDEVILWG 346 (383)
T ss_pred EECCEEEEEEEEEEE--EEEEEECCCCCCCCCCCEEEEEE
T ss_conf 886746314410141--00666238888898761689974
No 50
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=96.21 E-value=0.11 Score=30.72 Aligned_cols=174 Identities=14% Similarity=0.126 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HHHC--CCCC-CCEEECCCCCHHH
Q ss_conf 9999999999998533--6986999541059999999998518748980799998-9873--6880-1088537778034
Q gi|254780741|r 12 QKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LGHE--KFGG-ETHAYNVAYKDCE 85 (367)
Q Consensus 12 ~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la~~--g~~~-~~i~~~~~~~~~e 85 (367)
+.|+++++.-...... ..+++.-.-|+-|...|........-.|-=.=..|+. ...+ ..+. .-+..++-=+ .-
T Consensus 7 ~~i~~~I~~a~~~~gR~~~~V~LiaVSK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NK 85 (224)
T cd06824 7 AQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPIQS-NK 85 (224)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCH-HH
T ss_conf 99999999999983879576599998899899999999986995247870999999999853378955999775520-16
Q ss_pred HHHHHCCCCEE-EECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HH
Q ss_conf 78861388689-85672059999998612345--6148996357744310124557864357427888874-------31
Q gi|254780741|r 86 IDAVLSNCDTI-IFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EI 155 (367)
Q Consensus 86 l~~a~~~~~~i-~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~ 155 (367)
++.++.....| ++||+.-...|...+...+. +|+|-||. ++..+|.|+..+++.+. ..
T Consensus 86 vk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~------------s~E~~K~G~~~~e~~~~~~~i~~~~~ 153 (224)
T cd06824 86 TKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI------------SGEDSKSGVAPEDAAELAEAISQLPN 153 (224)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 799998521897645099999999999972998628999853------------78500269899999999999995699
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEC
Q ss_conf 4960665305656661478999999999898650---8875087533
Q gi|254780741|r 156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF---ITQIEWISLG 199 (367)
Q Consensus 156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~---~~~l~~idiG 199 (367)
.++.||.+- +....+..........+.+++.++ +..+..|..|
T Consensus 154 l~i~GLMti-~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMG 199 (224)
T cd06824 154 LRLRGLMAI-PAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMG 199 (224)
T ss_pred CCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 842667765-7999885789999999999999998517998957770
No 51
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=95.93 E-value=0.15 Score=29.85 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHH--CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HHHCCCCC-C-CEEECCCCCHHHH
Q ss_conf 9999999999998533--6986999541059999999998518748980799998-98736880-1-0885377780347
Q gi|254780741|r 12 QKLLNNLDTALYIRKN--AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LGHEKFGG-E-THAYNVAYKDCEI 86 (367)
Q Consensus 12 ~~i~~n~~~~~~~~~~--~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la~~g~~~-~-~i~~~~~~~~~el 86 (367)
+.|+++++........ ..+++.=..|.-|...|..+.....-.|-=.=..|+. .+. .++. + +-.|=|..-+.-+
T Consensus 6 ~~i~~~I~~a~~~~~R~~~~V~LiaVsK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~-~l~~~~i~wHfIG~LQsNKv 84 (222)
T cd00635 6 EEVRERIAAAAERAGRDPDEVTLVAVSKTVPAEAIREAIEAGQRDFGENRVQEALDKAE-ELPDPDIEWHFIGHLQTNKV 84 (222)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCCCCCEEEEECCCCHHHH
T ss_conf 99999999999982889565189999899899999999985996236770899998687-54888825999667623669
Q ss_pred HHHHCCCCEE-EECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHC
Q ss_conf 8861388689-85672059999998612345--6148996357744310124557864357427888874-------314
Q gi|254780741|r 87 DAVLSNCDTI-IFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EIK 156 (367)
Q Consensus 87 ~~a~~~~~~i-~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~~ 156 (367)
+.++.....| ++||+..+++|...+...+. +|+|-||.+ ...+|.|+..+++.+. ...
T Consensus 85 k~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vlIQVNis------------~e~~K~G~~~~e~~~~~~~~~~~~~l 152 (222)
T cd00635 85 KYAVRLFDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVNIG------------GEESKSGVAPEELEELLEEIAALPNL 152 (222)
T ss_pred HHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECC------------CCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 987500458887788999999999999729997189998158------------87555688999999999999966899
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHH----HCCCCCEEEEEC
Q ss_conf 9606653056566614789999999998986----508875087533
Q gi|254780741|r 157 NVNGLMFHNNCENKSFLCFSAMLKNIEKEFG----HFITQIEWISLG 199 (367)
Q Consensus 157 ~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~----~~~~~l~~idiG 199 (367)
++.||.+- ++...+...-......+.+++. ++...+..|..|
T Consensus 153 ~~~GLM~i-~p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~~LSMG 198 (222)
T cd00635 153 RIRGLMTI-APLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMG 198 (222)
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
T ss_conf 75103653-69999979999999999999999876459993988981
No 52
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=88.72 E-value=1.9 Score=22.59 Aligned_cols=177 Identities=14% Similarity=0.077 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCC--EEECCCCCHHHHHH
Q ss_conf 9999999999999853369869995410599999999985187489807999989873688010--88537778034788
Q gi|254780741|r 11 KQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGET--HAYNVAYKDCEIDA 88 (367)
Q Consensus 11 ~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~--i~~~~~~~~~el~~ 88 (367)
...|++++.+.........+++.=.-|.-|...|..+.....-.|-=.-..|+..=...++.+. +..++ .-+.-++.
T Consensus 5 l~~I~~~I~~a~~~~~~~~v~LiAVsK~~~~e~I~~a~~~G~~~fGENrvQE~~~K~~~l~~~i~WHfIG~-LQsNKvk~ 83 (227)
T cd06822 5 LKRIRQAVKRASKKLPASKPRLVAVSKTKPAELIKEAYDAGQRHFGENYVQELIEKAPDLPIDIKWHFIGH-LQSNKVKK 83 (227)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHH
T ss_conf 99999999999976799996899997998999999999869960288609999999984532545999645-32434899
Q ss_pred HHC--CCCEE-EECCCHHHHHHHHHHHCCC----CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--------
Q ss_conf 613--88689-8567205999999861234----56148996357744310124557864357427888874--------
Q gi|254780741|r 89 VLS--NCDTI-IFNTVSQLNKFKDKAQKLH----KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------- 153 (367)
Q Consensus 89 a~~--~~~~i-~iDs~~El~~i~~~a~~~~----~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------- 153 (367)
++. +...| ++||+.-++.|...+...+ .+|+|-||.+ ...+|.|+..+++.+.
T Consensus 84 i~~~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~l~vliQVNi~------------~E~~K~G~~~~e~~~~~~~i~~~~ 151 (227)
T cd06822 84 LLKVPNLYMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVNTS------------GEESKSGLEPSEAVELVKHIIEEC 151 (227)
T ss_pred HHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC------------CCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 97067744664157499999999999973688870699997027------------864568989999999999999868
Q ss_pred HHCCCEEEEECCCCCCCC----H-HHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 314960665305656661----4-78999999999898650887508753377
Q gi|254780741|r 154 EIKNVNGLMFHNNCENKS----F-LCFSAMLKNIEKEFGHFITQIEWISLGGG 201 (367)
Q Consensus 154 ~~~~i~Gih~H~gs~~~~----~-~~~~~~l~~~~~~~~~~~~~l~~idiGGG 201 (367)
...++.||.+-- ....+ . ..|+.+-+...++..+++...+...+-=|
T Consensus 152 ~~l~i~GLMti~-p~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~~~eLSMG 203 (227)
T cd06822 152 PNLKFSGLMTIG-SFGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMG 203 (227)
T ss_pred CCCEEEEEEEEC-CCCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf 997688999869-8998800221399999999999999974999997988685
No 53
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=84.46 E-value=3.1 Score=21.12 Aligned_cols=175 Identities=16% Similarity=0.118 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHH-C-CCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCC----CCEEECCCCCHH
Q ss_conf 99999999999998533-6-98699954105999999999851874898079999898736880----108853777803
Q gi|254780741|r 11 KQKLLNNLDTALYIRKN-A-GVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGG----ETHAYNVAYKDC 84 (367)
Q Consensus 11 ~~~i~~n~~~~~~~~~~-~-~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~----~~i~~~~~~~~~ 84 (367)
...+++++++-...... + .+++.=.-|+-|...|-+.+....-.|-=.=..|+.-=.+.++. +-+..+|-- +.
T Consensus 7 l~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~~~~I~~~~~aG~r~fGENrvQe~~~K~~~l~~~~~i~WHfIG~LQ-sN 85 (228)
T COG0325 7 LAAVRERIAAAAERAGRNPGSVTLVAVSKTVPAEDIREAYEAGQRHFGENRVQEALDKIEALKDLPDIEWHFIGPLQ-SN 85 (228)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCCCEEEEEECHHH-HH
T ss_conf 99999999999997389988479999767789999999998488032331899999999964767881799964113-56
Q ss_pred HHHHHHCCCCEE-EECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-------HH
Q ss_conf 478861388689-8567205999999861234--5614899635774431012455786435742788887-------43
Q gi|254780741|r 85 EIDAVLSNCDTI-IFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE-------SE 154 (367)
Q Consensus 85 el~~a~~~~~~i-~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~-------~~ 154 (367)
-.+.+++....+ ++|++.-...|.+.+...+ .+|.|-||- ++..||-|+..+++.+ ..
T Consensus 86 K~k~v~~~~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVNi------------~~E~sK~G~~~~e~~~~~~~~~~~~ 153 (228)
T COG0325 86 KVKLVAENFDWIHSLDRLKLAKELNKRALELPKPLNVLIQVNI------------SGEESKSGVPPEELDELAQEVQELP 153 (228)
T ss_pred HHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 7999984242333307799999999899737988638999943------------8862337999899999999997489
Q ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEC
Q ss_conf 149606653056566614789999999998986508---875087533
Q gi|254780741|r 155 IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFI---TQIEWISLG 199 (367)
Q Consensus 155 ~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~---~~l~~idiG 199 (367)
..+|.||.+-. +-..+.......+..+.++++++. ..++.|..|
T Consensus 154 ~L~l~GLM~ip-p~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMG 200 (228)
T COG0325 154 NLELRGLMTIP-PLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMG 200 (228)
T ss_pred CCEEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 97675777417-998997999999999999999998745897852686
No 54
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=84.33 E-value=2.9 Score=21.35 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=30.6
Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCC-EEEEEHHH
Q ss_conf 8650887508753377666445568078999999875-42165-04530022
Q gi|254780741|r 186 FGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS-EKYSV-QIYLEPGE 235 (367)
Q Consensus 186 ~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~-~~~~~-~l~iEPGR 235 (367)
+.+.+..++.|=+|||-|-.-+...++.+.+.+.+.. .-.++ ++-+|-||
T Consensus 221 l~~~~~~i~TIY~GGGTPS~Ls~~ql~~ll~~i~~~F~~~~~~~EiTvEanR 272 (497)
T PRK08207 221 LKEKGLKIETIYFGGGTPTSITAEEFEKLLEEIYESFPDVKNVKEFTVEAGR 272 (497)
T ss_pred HHCCCCEECEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 6237980356997998100299999999999999865768999779997879
No 55
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating; InterPro: IPR006113 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) , . Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved . The protein is a homodimer in which the monomers act independently : each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet . NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket . This model does not specify whether the cofactor is NADP only, NAD only, or both.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt.
Probab=84.03 E-value=3.2 Score=21.00 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHHCCCCCCCEEEC--CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCC--------------
Q ss_conf 898736880108853--7778034788613886898567205999999861234561489963577--------------
Q gi|254780741|r 64 MLGHEKFGGETHAYN--VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVS-------------- 127 (367)
Q Consensus 64 ~la~~g~~~~~i~~~--~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~-------------- 127 (367)
..+..|| +..||| +.|+++.|.....+..++=..|++|+-...+ .|+||+|=|.-+-.
T Consensus 17 N~~d~GF--~V~VyNRt~~Ktd~fl~~~~~gk~i~g~~~ieeFV~~Le----~PRKImLMVkAG~pVdaD~~I~~L~P~L 90 (480)
T TIGR00873 17 NMADHGF--TVAVYNRTPEKTDEFLKERAKGKKIVGAYSIEEFVQSLE----RPRKIMLMVKAGAPVDADAVINSLLPLL 90 (480)
T ss_pred HHHHCCC--CEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC----CCCEEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 8874698--279972684799999860378885334326799998506----8872888775388537789999964435
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC--EEE-------------EECCCCCCCCHHHHHHHHHHHHHHHHHCC--
Q ss_conf 4431012455786435742788887431496--066-------------53056566614789999999998986508--
Q gi|254780741|r 128 YSKFILADPNRPFSRLGEKCKDKIESEIKNV--NGL-------------MFHNNCENKSFLCFSAMLKNIEKEFGHFI-- 190 (367)
Q Consensus 128 ~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i--~Gi-------------h~H~gs~~~~~~~~~~~l~~~~~~~~~~~-- 190 (367)
..+.=.+|- .+|=|-.+.+.-.+....+| .|. +...| .+.++|+.+--.+.++.++..
T Consensus 91 E~GDiIIDG--GNS~Y~DT~RR~~eL~~~Gi~FvG~GvSGGEeGAl~GPSiMPG---G~~~Ay~~~~PIl~~IAAkv~dP 165 (480)
T TIGR00873 91 EKGDIIIDG--GNSHYKDTERRYKELKAKGILFVGVGVSGGEEGALKGPSIMPG---GSAEAYPLVAPILQKIAAKVDDP 165 (480)
T ss_pred CCCCEEECC--CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCCC---CCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 899888758--8788466578999998649816730132453021378877888---79878999967887655421685
Q ss_pred -CC--CEEEEECC-CCCCC
Q ss_conf -87--50875337-76664
Q gi|254780741|r 191 -TQ--IEWISLGG-GIHFT 205 (367)
Q Consensus 191 -~~--l~~idiGG-G~~~~ 205 (367)
.+ ++||==+| |+++.
T Consensus 166 dg~PCC~wiG~~GAGHyVK 184 (480)
T TIGR00873 166 DGEPCCTWIGPDGAGHYVK 184 (480)
T ss_pred CCCCCEEEECCCCCCCEEE
T ss_conf 3294224378679843053
No 56
>PRK04036 DNA polymerase II small subunit; Validated
Probab=83.88 E-value=1 Score=24.27 Aligned_cols=75 Identities=17% Similarity=0.386 Sum_probs=45.4
Q ss_pred EEE-ECCCCCCCCHHHHHHHHHHHHHHH--HHCCCCCEEEEECC----CCCC---CCCCCCC-------HHHHHHHHHHH
Q ss_conf 665-305656661478999999999898--65088750875337----7666---4455680-------78999999875
Q gi|254780741|r 160 GLM-FHNNCENKSFLCFSAMLKNIEKEF--GHFITQIEWISLGG----GIHF---TDKDYPV-------KDFCQRLKEFS 222 (367)
Q Consensus 160 Gih-~H~gs~~~~~~~~~~~l~~~~~~~--~~~~~~l~~idiGG----G~~~---~~~~~~~-------~~~~~~i~~~~ 222 (367)
.|+ .|+||...--..|.+.++.+---. .++...++|+=|+| |.++ .+.+..+ +.+++.++++.
T Consensus 241 fiSDiHvGSk~Fle~~w~kFi~Wln~~~~~~~~a~~vkYlviaGD~VDGVGiYPgQe~eL~i~di~~QY~~~a~~l~~iP 320 (497)
T PRK04036 241 FISDVHVGSKEFLEDAFEKFLDWLNGEVGSEEIASRVKYLIIAGDLVDGIGIYPGQEKELDIVDIYEQYEEAAEYLSQIP 320 (497)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 99422217187879999999998658986344564053899945743640058984341430789999999999998585
Q ss_pred HHCCCEEEEEHHHH
Q ss_conf 42165045300220
Q gi|254780741|r 223 EKYSVQIYLEPGEA 236 (367)
Q Consensus 223 ~~~~~~l~iEPGR~ 236 (367)
+ ++++++=||.-
T Consensus 321 ~--~I~iii~PGNH 332 (497)
T PRK04036 321 E--HIKIIISPGNH 332 (497)
T ss_pred C--CCEEEECCCCC
T ss_conf 5--75799857986
No 57
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=83.15 E-value=3.5 Score=20.77 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=46.0
Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECC
Q ss_conf 78645998623336664552135667788798999968870223243476899887799996799099997389
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFS 358 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~ 358 (367)
+.-++|.+-|+-= |+.+-..-.--...++||.++|..-+-+......+| .|.++++++++.+.-++++.
T Consensus 53 ~Rf~TYvI~g~~G-Sg~I~lNGaAAr~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i~~~~~~~ 121 (126)
T PRK05449 53 ARFETYVIKGERG-SGVICLNGAAARLVQVGDLVIIAAYAQMDEEEAKTH----KPKVVFVDEDNRIKETAKYI 121 (126)
T ss_pred CEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEEECCC
T ss_conf 5899999864798-875875667872279999999998663798897368----77799989998688870566
No 58
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase; InterPro: IPR005963 Tryptophan 5-monooxygenase (1.14.16.4 from EC) is a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria. It is the rate-limiting enzyme in the biosynthesis of serotonin in the central nervous system and catalyzes the first step of the synthesis of melatonin in the pineal gland . L-tryptophan + tetrahydropteridine + O2 = 5-hydroxy-L-tryptophan + dihydropteridine + H2O ; GO: 0004510 tryptophan 5-monooxygenase activity, 0042427 serotonin biosynthetic process.
Probab=81.37 E-value=1.6 Score=22.97 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=77.9
Q ss_pred CEEEEEEECCC--CHHHHHHHHH-HCCEEEEECHHHHHHHHC-CC-CCCCEEEC--C--CCCHHHHHHHHC----CCCEE
Q ss_conf 86999541059--9999999985-187489807999989873-68-80108853--7--778034788613----88689
Q gi|254780741|r 30 VKLLLALKCFA--AWGMFDTLNQ-YMDGTTSSSLYEVMLGHE-KF-GGETHAYN--V--AYKDCEIDAVLS----NCDTI 96 (367)
Q Consensus 30 ~~i~yA~KaN~--~~~il~~l~~-~g~g~dv~S~~E~~la~~-g~-~~~~i~~~--~--~~~~~el~~a~~----~~~~i 96 (367)
.+|+--+-++- ...+++.|+. .....+|.|....-+.++ .. +...-.+. + +++=.||..+.. .|.-+
T Consensus 97 ~dvLv~ve~~~~~~~~~~~~L~~n~~~~~~v~~~~~~~l~~~~~~~~~S~~~~~~~~WFPk~IsDLD~~~nrVLMYG~eL 176 (499)
T TIGR01270 97 LDVLVDVEVDREELEEVLELLKSNELDVLEVTSPDRMTLKEEKSLEAGSDDATEKVPWFPKKISDLDKCANRVLMYGSEL 176 (499)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCEEEECCCCC
T ss_conf 02467515765679999999740574457741765666421014678886556886457765040445424033006667
Q ss_pred EECCCH----HHH----HHHHHHHC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH--------HHHHCCC
Q ss_conf 856720----599----99998612--34561489963577443101245578643574278888--------7431496
Q gi|254780741|r 97 IFNTVS----QLN----KFKDKAQK--LHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI--------ESEIKNV 158 (367)
Q Consensus 97 ~iDs~~----El~----~i~~~a~~--~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~--------~~~~~~i 158 (367)
-+|..- |.. .++++|-+ +|..|- ||. ....+ ..=+|+-..++. +..++|+
T Consensus 177 DADHPGFKD~~YRkRR~~FA~lA~NYKHG~pIP-~ve--YT~~E---------~kTWG~iyreL~~LY~~hAc~efl~Nl 244 (499)
T TIGR01270 177 DADHPGFKDKEYRKRRMMFADLALNYKHGEPIP-RVE--YTEEE---------KKTWGTIYRELRRLYKTHACKEFLDNL 244 (499)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CCC--CCCCC---------CCCCCHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 878725887235677899999986310579888-620--15134---------210102212342411120105665105
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 06653056566614789999999998986508875
Q gi|254780741|r 159 NGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQI 193 (367)
Q Consensus 159 ~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l 193 (367)
.-|.=|+|-.-.+++.++.+-+.+.+ +.|..+
T Consensus 245 ~lL~~~cGY~E~niPQL~dvs~FLK~---kTGF~~ 276 (499)
T TIGR01270 245 PLLEKYCGYREDNIPQLEDVSKFLKA---KTGFRL 276 (499)
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHH---CCCCEE
T ss_conf 77875268876877527899999632---258542
No 59
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=80.93 E-value=1.8 Score=22.63 Aligned_cols=75 Identities=9% Similarity=0.236 Sum_probs=43.4
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECC-------CCCCCCCCCCC-------HHHHHHHHHHHHHCC
Q ss_conf 6530565666147899999999989865088750875337-------76664455680-------789999998754216
Q gi|254780741|r 161 LMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGG-------GIHFTDKDYPV-------KDFCQRLKEFSEKYS 226 (367)
Q Consensus 161 ih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG-------G~~~~~~~~~~-------~~~~~~i~~~~~~~~ 226 (367)
--+|+||+..--..|.+.++.+.-..+ +..+++|+.++| .+|.++.+..+ +.+++.+.++.. +
T Consensus 232 sDih~GSk~F~~~~f~~fi~wl~g~~~-~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~vp~--~ 308 (481)
T COG1311 232 SDIHRGSKEFLEDEFEKFIDWLNGPGD-LASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQVPE--H 308 (481)
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCC-CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC--C
T ss_conf 611105288888899999998638754-3212379997055213434446861210005516789999998853877--7
Q ss_pred CEEEEEHHHHCC
Q ss_conf 504530022014
Q gi|254780741|r 227 VQIYLEPGEAIV 238 (367)
Q Consensus 227 ~~l~iEPGR~lv 238 (367)
+++++=||..=.
T Consensus 309 I~v~i~PGnhDa 320 (481)
T COG1311 309 IKVFIMPGNHDA 320 (481)
T ss_pred CEEEEECCCCCC
T ss_conf 569981588875
No 60
>TIGR02050 gshA_cyan_rel uncharacterized enzyme; InterPro: IPR011793 This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believed to make glutathione, and the function is unknown..
Probab=74.24 E-value=2.7 Score=21.50 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCCEEEECCCHH----HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCC--HHHHHHHH
Q ss_conf 034788613886898567205----99999986123456148996357744310124557864--35742--78888743
Q gi|254780741|r 83 DCEIDAVLSNCDTIIFNTVSQ----LNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFS--RLGEK--CKDKIESE 154 (367)
Q Consensus 83 ~~el~~a~~~~~~i~iDs~~E----l~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~s--kfG~~--~~~~~~~~ 154 (367)
++||.+-.-..++=+++++.| |....+.+...-.++|+||- ..++|+.. .++ +.... .+++.+..
T Consensus 46 ~~E~~~~~vE~at~v~~~~~eA~~~~~~~r~~l~~~A~~~G~~~~---~~gtHPf~----~W~~~~~~~~~rY~~~~e~~ 118 (297)
T TIGR02050 46 KKELFESQVELATPVCTTLAEALAELREVRARLVEAASDLGLRIA---AAGTHPFA----RWREQELAENPRYQRLLERY 118 (297)
T ss_pred CHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE---ECCCCCCH----HHHCCCCCCCHHHHHHHHHC
T ss_conf 422221444465684478789999999999999999866486365---13467753----33147778655589999861
Q ss_pred H-----CCCEEEEECCCCCCCC
Q ss_conf 1-----4960665305656661
Q gi|254780741|r 155 I-----KNVNGLMFHNNCENKS 171 (367)
Q Consensus 155 ~-----~~i~Gih~H~gs~~~~ 171 (367)
. .=+.|+|+|+|..+.+
T Consensus 119 gy~~~~~Lv~G~HVHVgv~s~~ 140 (297)
T TIGR02050 119 GYVARQSLVFGLHVHVGVPSPD 140 (297)
T ss_pred CEEEHHEEECCEEEEECCCCHH
T ss_conf 8000001321134770327643
No 61
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=73.54 E-value=6.8 Score=18.89 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=40.8
Q ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCC--CCCCCHHHHHHHHH---HHHHCC
Q ss_conf 149606653056566614789999999998---9865088750875337766644--55680789999998---754216
Q gi|254780741|r 155 IKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTD--KDYPVKDFCQRLKE---FSEKYS 226 (367)
Q Consensus 155 ~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~--~~~~~~~~~~~i~~---~~~~~~ 226 (367)
...+..+++...-...+...+++.++.+.+ +...++ .+.+-+..|.+... .+..++.+.+.+++ ..++++
T Consensus 39 gl~i~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~a~~lG--~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g 116 (201)
T pfam01261 39 GLEITSLNPSLGLLEPDEREREAALEALKRAIELAAALG--AKVVVVHPGGALPGEDREEALDRLAESLNELAELAEEYG 116 (201)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 997999977865458898999999999999999999739--958998268878899999999999999999999887557
Q ss_pred CEEEEEHHH
Q ss_conf 504530022
Q gi|254780741|r 227 VQIYLEPGE 235 (367)
Q Consensus 227 ~~l~iEPGR 235 (367)
+++.+||--
T Consensus 117 i~i~iE~~~ 125 (201)
T pfam01261 117 VKLALENHP 125 (201)
T ss_pred EEEEEEECC
T ss_conf 389999879
No 62
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=70.99 E-value=7.7 Score=18.52 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=5.5
Q ss_pred CCCEEEEEEC
Q ss_conf 5614899635
Q gi|254780741|r 116 KKIGLRINPS 125 (367)
Q Consensus 116 ~~I~lRinP~ 125 (367)
.+|.+-+||+
T Consensus 124 ~EitiE~nP~ 133 (416)
T COG0635 124 AEITIEANPG 133 (416)
T ss_pred CEEEEEECCC
T ss_conf 2799950888
No 63
>TIGR00629 uvde UV damage endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts . The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism .; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair.
Probab=70.64 E-value=7.9 Score=18.47 Aligned_cols=167 Identities=20% Similarity=0.176 Sum_probs=81.2
Q ss_pred CCCCEEEC-CCCCH--H-HHH-HHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 80108853-77780--3-478-8613886898567205999999861234561489963577443101245578643574
Q gi|254780741|r 71 GGETHAYN-VAYKD--C-EID-AVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGE 145 (367)
Q Consensus 71 ~~~~i~~~-~~~~~--~-el~-~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~ 145 (367)
.|+.+.-| |-|+. . |+- ++++ .+..-|+..+-++..+..+.|.+ .+|+..+ =++.+++..-.=+|-.
T Consensus 45 ePehhlknkPdkskePqdelG~e~v~---~lg~aN~rd~~k~l~w~~~~GI~-f~R~SS~----~~PfAsHp~~gy~l~~ 116 (345)
T TIGR00629 45 EPEHHLKNKPDKSKEPQDELGKEAVK---TLGKANLRDLVKLLHWNIGYGIR-FLRLSSS----LFPFASHPDVGYDLVT 116 (345)
T ss_pred CCCHHHCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCE-EEECCCC----CCCCCCCCCCCCCCCC
T ss_conf 73023306774456753465489999---98888799999999988626831-6750200----0543255213641366
Q ss_pred CHHHHHHHHH----CCCEEEEECCC--CCCCCH------------HHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCC
Q ss_conf 2788887431----49606653056--566614------------789999999998986508-8750875337766644
Q gi|254780741|r 146 KCKDKIESEI----KNVNGLMFHNN--CENKSF------------LCFSAMLKNIEKEFGHFI-TQIEWISLGGGIHFTD 206 (367)
Q Consensus 146 ~~~~~~~~~~----~~i~Gih~H~g--s~~~~~------------~~~~~~l~~~~~~~~~~~-~~l~~idiGGG~~~~~ 206 (367)
...+..+..+ ..=.-+.+|-| +|..++ +...++|+.+ ++.++.. ..+=.|-|||-|+ .
T Consensus 117 faq~~l~E~G~la~~~~~Rlt~HPgQfT~~~SPre~Vv~sAirDlaYHd~~L~~m-kl~e~~N~DaV~~IH~GG~fg--~ 193 (345)
T TIGR00629 117 FAQKELREIGKLAKTYQHRLTFHPGQFTQLTSPRESVVKSAIRDLAYHDELLSAM-KLAEQLNKDAVLIIHLGGAFG--N 193 (345)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCEEEEECCCCCC--C
T ss_conf 1778999999999981884124886110146865567677765489999999860-670011665388874388767--6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC
Q ss_conf 55680789999998754216504530022014574188878878630
Q gi|254780741|r 207 KDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE 253 (367)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~ 253 (367)
++..++.|.+.++++.++-.-|+++|= .|-+..+-..+.+.+
T Consensus 194 K~~tl~rF~~Ny~rLsq~~K~RlvLEN-----DD~~wtv~dlLpvCe 235 (345)
T TIGR00629 194 KDTTLARFKKNYKRLSQSIKERLVLEN-----DDVTWTVEDLLPVCE 235 (345)
T ss_pred HHHHHHHHHHHHHHCCHHHHCCCCEEC-----CCCCCCHHHHHHHHH
T ss_conf 789999999867404467640351102-----786310542543212
No 64
>cd03347 eu_PheOH Eukaryotic phenylalanine-4-hydroxylase (eu_PheOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic phenylalanine-4-hydroxylase (pro_PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH catalyzes the first and rate-limiting step in the metabolism of the amino acid L-phenylalanine (L-Phe), the hydroxylation of L-Phe to L-tyrosine (L-Tyr). It uses (6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the physiological electron donor. The catalytic activity of the tetrameric enzyme is tightly regulated by the binding of L-Phe and BH4 as well as by phosphorylation. Mutations in the human enzyme are linked to a severe variant of phenylketonuria.
Probab=68.77 E-value=3.9 Score=20.46 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=4.1
Q ss_pred CCCHHHHHHHH
Q ss_conf 67205999999
Q gi|254780741|r 99 NTVSQLNKFKD 109 (367)
Q Consensus 99 Ds~~El~~i~~ 109 (367)
|++-||+.+.+
T Consensus 104 d~IPQl~dvs~ 114 (306)
T cd03347 104 DNIPQLEDVSN 114 (306)
T ss_pred CCCCCHHHHHH
T ss_conf 88997699999
No 65
>cd03345 eu_TyrOH Eukaryotic tyrosine hydroxylase (TyrOH); a member of the biopterin-dependent aromatic amino acid hydroxylase family of non-heme, iron(II)-dependent enzymes that also includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH) and eukaryotic tryptophan hydroxylase (TrpOH). TyrOH catalyzes the conversion of tyrosine to L-dihydroxyphenylalanine (L-DOPA), the rate-limiting step in the biosynthesis of the catecholamines dopamine, noradrenaline, and adrenaline.
Probab=68.39 E-value=8.8 Score=18.16 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=4.6
Q ss_pred ECCCHHHHHHHH
Q ss_conf 567205999999
Q gi|254780741|r 98 FNTVSQLNKFKD 109 (367)
Q Consensus 98 iDs~~El~~i~~ 109 (367)
-|++-||+.+.+
T Consensus 102 ~d~IPQl~dvs~ 113 (298)
T cd03345 102 EDRIPQLEDVSE 113 (298)
T ss_pred CCCCCCHHHHHH
T ss_conf 888998799989
No 66
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=67.60 E-value=9.1 Score=18.06 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=63.8
Q ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHH----CCCEEEEECCCC
Q ss_conf 6898567205999999861234561489963577443101245578643574--2788887431----496066530565
Q gi|254780741|r 94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGE--KCKDKIESEI----KNVNGLMFHNNC 167 (367)
Q Consensus 94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~--~~~~~~~~~~----~~i~Gih~H~gs 167 (367)
..+...|+..+.++.+...+.+.+ ..|+..++ .+.++.- ....+.. ...+..+... ..=.-+.||.|-
T Consensus 41 ~~l~~~Nl~~l~~il~~n~~~~I~-~fRlSS~l----~P~~shp-~~~~~~~~~~i~~~l~~iG~~ak~~~iRls~HPgq 114 (316)
T PRK02308 41 LEIALSNLEDLLRILEYNIAHGIR-LYRLSSSL----IPLASHP-ELVEWDYIEAFKEELRKIGALIKEHNMRLSFHPDQ 114 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCE-EEEECCCC----CCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf 999999999999999999975970-89925663----6677773-32458529999999999999999829458627976
Q ss_pred ----CCCCHHHHHHHHHHHH---HHHHHCCCCC---EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf ----6661478999999999---8986508875---0875337766644556807899999987542165045300
Q gi|254780741|r 168 ----ENKSFLCFSAMLKNIE---KEFGHFITQI---EWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEP 233 (367)
Q Consensus 168 ----~~~~~~~~~~~l~~~~---~~~~~~~~~l---~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEP 233 (367)
.+.+.+..++.+..+. ++++..|..- -.|.+||+++ .++..++.|++.+..+.+.-.-+|.+|=
T Consensus 115 f~vL~S~~~~Vv~~si~dL~~Ha~~ld~mGl~~~~~i~IHigg~yg--dk~~a~~rf~~n~~~L~~~vr~RL~lEN 188 (316)
T PRK02308 115 FVVLNSPKPEVVENSIKDLEYHARLLDLMGIEDSSKINIHVGGAYG--DKEKALERFIENIKKLPESIKKRLTLEN 188 (316)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHCCHHHHHEEEEEC
T ss_conf 2326899889999999999999999998479988628998147669--8789999999988658996732689955
No 67
>pfam02261 Asp_decarbox Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.
Probab=66.36 E-value=9.6 Score=17.90 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=40.2
Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf 7864599862333666455213566778879899996887022324347689988779999679909
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTI 351 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~ 351 (367)
+.-++|.+-|+- -|+.+-..-.--...++||.++|..-+-+.......| .|.++++++++.+
T Consensus 53 ~R~~TYvI~g~~-gSg~I~lNGaAAr~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i 114 (116)
T pfam02261 53 ERFETYVIPGER-GSGVICLNGAAARLVQPGDLVIIAAYAQMDEEEAKTH----KPKVVFVDEDNRI 114 (116)
T ss_pred CEEEEEEEECCC-CCCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCC
T ss_conf 689999886479-9866864667862179999999998653798897378----7779999999889
No 68
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=61.60 E-value=10 Score=17.67 Aligned_cols=115 Identities=12% Similarity=0.114 Sum_probs=58.1
Q ss_pred CCHHHHHH--HHHHHHHHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEE
Q ss_conf 61478999--99999989865088750875337766---64455680789999998754216504530022014574188
Q gi|254780741|r 170 KSFLCFSA--MLKNIEKEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTL 244 (367)
Q Consensus 170 ~~~~~~~~--~l~~~~~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~l 244 (367)
-++....+ +++.+.+.+.+.|.+=-.||+||-+- .+..+.| +++-||--+.- .+....
T Consensus 181 LDLggIAKGYAvD~i~~~L~~~Gi~~~lV~iGGei~~~G~~~~g~p----------------W~IgI~~P~~~-~~~~~~ 243 (351)
T PRK10461 181 VDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGMNGEGQP----------------WRVAIQKPTDR-ENAVQA 243 (351)
T ss_pred EEECHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCC----------------EEEEECCCCCC-CCCCEE
T ss_conf 8613215999999999999976998469970552798778999995----------------59998188876-666258
Q ss_pred EEEEE----EEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCEEEECCC
Q ss_conf 87887----86304433343333565656-6400134553000247-86459986233366645521356
Q gi|254780741|r 245 NTTVL----DISENIKNLVIVDSSVEAHV-PDYLLYQESATIYPNT-GPYTAMVCGRSCLAGDIFGEFHF 308 (367)
Q Consensus 245 v~~V~----~~K~~~~~~v~vd~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~v~G~~C~~~D~l~~~~~ 308 (367)
+.++. .+.-++++|...|+-..+|+ .|.= ..|-. .-...+|..+.|...|-|....+
T Consensus 244 ~v~l~~~avaTSG~Y~r~f~~~G~ry~HIIdP~T-------G~P~~~~~~SvTVia~~~~~ADalaTAl~ 306 (351)
T PRK10461 244 VVDINGHGISTSGSYRNYYELDGKRLSHVIDPQT-------GRPIEHNLVSVTVIAPTALEADGWDTGLM 306 (351)
T ss_pred EEEECCCEEEEECCCCCEEEECCCEEEEEECCCC-------CCCCCCCCEEEEEEECCHHHHHHHHHHHH
T ss_conf 9982794799136876668409938702776888-------99677896699999598167999999998
No 69
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=61.17 E-value=12 Score=17.28 Aligned_cols=124 Identities=15% Similarity=0.118 Sum_probs=50.4
Q ss_pred HCCCCEEEECCCHHHHHHHHHHHCC----CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECC
Q ss_conf 1388689856720599999986123----456148996357744310124557864357427888874314960665305
Q gi|254780741|r 90 LSNCDTIIFNTVSQLNKFKDKAQKL----HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHN 165 (367)
Q Consensus 90 ~~~~~~i~iDs~~El~~i~~~a~~~----~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~ 165 (367)
.-+|++-++=+.++|++|.+..++. ..++-+-+||+.- +.+.+......++.-+++
T Consensus 56 y~GGGTPs~l~~~~l~~l~~~i~~~~~~~~~E~TiE~nP~~~------------------~~~~l~~l~~~GvNRiSi-- 115 (374)
T PRK05799 56 FIGGGTPSYLSLEALEILLKTIKKLNKKENLEFTVEGNPGTF------------------TEEKLKILKSMGVNRISI-- 115 (374)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC------------------CHHHHHHHHHCCCCEEEE--
T ss_conf 979965022999999999999985688878458998566778------------------999999999719975888--
Q ss_pred CCCCCCHHHH---------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEE
Q ss_conf 6566614789---------99999999898650887508753377666445568078999999875421----6-50453
Q gi|254780741|r 166 NCENKSFLCF---------SAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYL 231 (367)
Q Consensus 166 gs~~~~~~~~---------~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~i 231 (367)
|-|+.+.... .++.+.+ +.+.+.+.+---+|+==|+| +...+.+.+.++.+.+-- . ..+.+
T Consensus 116 GVQSf~~~~l~~lgR~h~~~~~~~ai-~~~~~~gf~niniDLIyGlP----gQt~~~~~~~l~~~~~l~p~hiS~Y~L~i 190 (374)
T PRK05799 116 GLQAWQNSLLKTLGRIHTFEEFLENY-KLARKLGFNNINVDLMFGLP----NQTLEDWKETLEKVVELSPEHISCYSLII 190 (374)
T ss_pred ECCCCCHHHHHHHCCCCCHHHHHHHH-HHHHHCCCCCEEEEEECCCC----CCCHHHHHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 53358899999847999899999999-99997599746688544898----88789999999999841725013654205
Q ss_pred EHHHHCC
Q ss_conf 0022014
Q gi|254780741|r 232 EPGEAIV 238 (367)
Q Consensus 232 EPGR~lv 238 (367)
|||..+.
T Consensus 191 ~~~t~~~ 197 (374)
T PRK05799 191 EEGTPFY 197 (374)
T ss_pred CCCCHHH
T ss_conf 7886799
No 70
>pfam00842 Ala_racemase_C Alanine racemase, C-terminal domain.
Probab=60.20 E-value=12 Score=17.17 Aligned_cols=35 Identities=23% Similarity=0.158 Sum_probs=26.9
Q ss_pred EEEEEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf 45998623336664552135-66778879899996887
Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367)
Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367)
+.+.+.|..|+ |.+.-+. ..++.++||.+.+..-+
T Consensus 60 ~~~pivGrIsM--D~~~idv~~~~~~~~Gd~V~l~G~~ 95 (125)
T pfam00842 60 KRAPIVGRVSM--DQTMVDVTDIPDVKVGDEVTLFGPQ 95 (125)
T ss_pred EEEEEECEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf 99301072612--2589955688777789899998999
No 71
>pfam09561 RE_HpaII HpaII restriction endonuclease. This family includes the HpaII (recognizes and cleaves C^CGG) restriction endonuclease.
Probab=56.22 E-value=5.4 Score=19.54 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=13.6
Q ss_pred HHCCC--CEEEECCCHHHHHHHHH
Q ss_conf 61388--68985672059999998
Q gi|254780741|r 89 VLSNC--DTIIFNTVSQLNKFKDK 110 (367)
Q Consensus 89 a~~~~--~~i~iDs~~El~~i~~~ 110 (367)
+++++ +.+.+++.+++-....+
T Consensus 86 ~Ik~~~~~~fs~~~~e~fl~~i~i 109 (355)
T pfam09561 86 AIKNSSNRVFSIPGIEEFLNAIGI 109 (355)
T ss_pred HHHCCCCCEECCCCHHHHHHHHCC
T ss_conf 986278864657349999998533
No 72
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=55.55 E-value=15 Score=16.67 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=39.2
Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf 478645998623336664552135667788798999968870223243476899887799996799
Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG 349 (367)
Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g 349 (367)
.+.-++|.+-|+-= |+.+-..-.--...++||.++|..-+-+......+| .|.++++++++
T Consensus 51 G~Rf~TYvI~g~~g-Sg~I~lNGaAA~~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N 111 (111)
T cd06919 51 GARFETYVIPGERG-SGVICLNGAAARLGQPGDRVIIMAYALMDEEEAEGH----KPKVVLVDEKN 111 (111)
T ss_pred CCEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCC
T ss_conf 94789999864688-876874667862179999999998763798897168----77799978999
No 73
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.98 E-value=17 Score=16.30 Aligned_cols=108 Identities=13% Similarity=0.142 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEECCC----CCCCCCCCCCHHH
Q ss_conf 435742788887431496066530565666147899999999989865--0887508753377----6664455680789
Q gi|254780741|r 141 SRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH--FITQIEWISLGGG----IHFTDKDYPVKDF 214 (367)
Q Consensus 141 skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~--~~~~l~~idiGGG----~~~~~~~~~~~~~ 214 (367)
+.|+-..+++.+....-+.|+++-.|.+..--..+-+.++.+.+..+- +...++|---+|- +|.++.+...+-.
T Consensus 42 G~~~~~f~~~rer~Pv~lHGlslslgg~~~ld~~~l~~~k~li~r~~~~~~SeHL~~~~~~g~~yDLlPlP~teea~~~v 121 (282)
T COG3220 42 GPARAAFDAVRERLPVALHGLSLSLGGQAPLDLDLLRRIKALIKRYDPAFFSEHLSYCTDDGHLYDLLPLPFTEEAVDHV 121 (282)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHEEEECCCCEEECCCCCCCCHHHHHHH
T ss_conf 82888999998608846530111247899989999999999998737025422114642698330156676519999999
Q ss_pred HHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEE
Q ss_conf 9999987542165045300220145741888788
Q gi|254780741|r 215 CQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTV 248 (367)
Q Consensus 215 ~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V 248 (367)
|+.|+++.+.....|.+|==.+-....+....+|
T Consensus 122 a~~I~~~Qd~LerplllEN~s~Y~~~~~~~m~E~ 155 (282)
T COG3220 122 AARIREVQDVLERPLLLENPSYYLHSPCSAMNEV 155 (282)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHH
T ss_conf 9999999998668636307301025665431379
No 74
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=51.61 E-value=6.5 Score=19.01 Aligned_cols=52 Identities=17% Similarity=0.424 Sum_probs=32.3
Q ss_pred CC-CCEEEEECCCCCCCCCCCCCHHHHHHHHH---HHHHCCCEEEEEHHHHCCCCCEEEEEEEEEE
Q ss_conf 88-75087533776664455680789999998---7542165045300220145741888788786
Q gi|254780741|r 190 IT-QIEWISLGGGIHFTDKDYPVKDFCQRLKE---FSEKYSVQIYLEPGEAIVTNTTTLNTTVLDI 251 (367)
Q Consensus 190 ~~-~l~~idiGGG~~~~~~~~~~~~~~~~i~~---~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~ 251 (367)
.+ +++-+=|||||| |-|++.+.+ +.+ .++-++.-|+.+=|+||=|-.=-..+
T Consensus 291 LPPdvD~lYiGGGfP--------ElFae~L~~N~~l~~--~i~~f~~~G~P~YGECGGLMYL~~Sl 346 (464)
T TIGR00379 291 LPPDVDALYIGGGFP--------ELFAEELEKNEKLRD--SIKEFIQQGRPIYGECGGLMYLSESL 346 (464)
T ss_pred CCCCCCEEEECCCCH--------HHHHHHHHHHHHHHH--HHHHHHHCCCEEEEECCCHHHHCCCC
T ss_conf 971215765078852--------453653344489999--99999737883898506044320010
No 75
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=49.21 E-value=19 Score=16.02 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=40.2
Q ss_pred CEEEEEECCCCCCCCEEEEC-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 64599862333666455213-56677887989999688702232434768998877999967990999973
Q gi|254780741|r 287 PYTAMVCGRSCLAGDIFGEF-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE 356 (367)
Q Consensus 287 ~~~~~v~G~~C~~~D~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~ 356 (367)
-.+|.|.|+-= .-+++-+ .--...++||.++|..-+-++..... .+ .|.+++++++++..-..+
T Consensus 54 f~TYvI~g~rG--Sg~I~lNGAAArl~~~GD~VII~sy~~~~e~e~~---~~-~Pkvv~~d~~N~i~~~~~ 118 (126)
T COG0853 54 FSTYVIAGERG--SGVICLNGAAARLVQVGDLVIIMSYAQMSEEEAK---TH-KPKVVVVDEKNEIVDVLH 118 (126)
T ss_pred EEEEEEECCCC--CCEEEECHHHHHHCCCCCEEEEEECCCCCHHHHH---CC-CCEEEEECCCCCHHHHHC
T ss_conf 89999872687--8679756698852688998999986637987973---36-973999889872311214
No 76
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=48.52 E-value=19 Score=15.95 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=14.6
Q ss_pred CCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 98885689779999999999999
Q gi|254780741|r 1 MIKTPYYLIDKQKLLNNLDTALY 23 (367)
Q Consensus 1 ~i~TP~yv~d~~~i~~n~~~~~~ 23 (367)
||.+-=+-++.+.|++-+..+..
T Consensus 7 mlDvaR~f~~~~~ik~~id~ma~ 29 (348)
T cd06562 7 LLDTSRHFLSVDSIKRTIDAMAY 29 (348)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH
T ss_conf 66637887689999999999998
No 77
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=47.19 E-value=9.2 Score=18.02 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=24.6
Q ss_pred HCCCCCEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEEHHHHC
Q ss_conf 5088750875337766644556--8078999999875421650453002201
Q gi|254780741|r 188 HFITQIEWISLGGGIHFTDKDY--PVKDFCQRLKEFSEKYSVQIYLEPGEAI 237 (367)
Q Consensus 188 ~~~~~l~~idiGGG~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~iEPGR~l 237 (367)
+-.++++-|=||||+|=.+.+. ....+.+.|++..++ +..++-|.|=++
T Consensus 36 ~~lP~~d~lylgGGyPE~~a~~Ls~N~~~~~~ir~~~~~-G~PiyAECGGlM 86 (198)
T cd03130 36 EELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAES-GGPIYAECGGLM 86 (198)
T ss_pred CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEEECHHHH
T ss_conf 889987689827998758899997679999999999984-997799820488
No 78
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=46.94 E-value=20 Score=15.79 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=56.3
Q ss_pred CHHHHHHH--HHHHHHHHHHCCCCCEEEEECCCC---CCCCCCCCCHHHHHHHHHHHHHCCCEEEE---EHHHHCCCCCE
Q ss_conf 14789999--999998986508875087533776---66445568078999999875421650453---00220145741
Q gi|254780741|r 171 SFLCFSAM--LKNIEKEFGHFITQIEWISLGGGI---HFTDKDYPVKDFCQRLKEFSEKYSVQIYL---EPGEAIVTNTT 242 (367)
Q Consensus 171 ~~~~~~~~--l~~~~~~~~~~~~~l~~idiGGG~---~~~~~~~~~~~~~~~i~~~~~~~~~~l~i---EPGR~lv~~ag 242 (367)
++..+++. .+.+.+.+.+.+.+=-+||+||-+ +-+..+.| +++-+ +.+| +
T Consensus 171 DLggIAKGy~vD~~~~~l~~~gi~~~lV~~GG~i~~~G~~~~g~p----------------W~IgI~~P~~~~------~ 228 (337)
T COG1477 171 DLGGIAKGYAVDKAAEALEAEGIKSALVNLGGEIRVIGKNPDGKP----------------WRIGIQNPFAPR------G 228 (337)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHEEEECCCCEEEECCCCCCCC----------------CEEEEECCCCCC------C
T ss_conf 553034658999999999874861103643760688614899998----------------679973888887------7
Q ss_pred EEEEEEEEEE-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCEEEEEECCCCCCCCEEEECCC
Q ss_conf 8887887863-------044333433335656566400134553000247-86459986233366645521356
Q gi|254780741|r 243 TLNTTVLDIS-------ENIKNLVIVDSSVEAHVPDYLLYQESATIYPNT-GPYTAMVCGRSCLAGDIFGEFHF 308 (367)
Q Consensus 243 ~lv~~V~~~K-------~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~G~~C~~~D~l~~~~~ 308 (367)
. +-.|+.++ -++.+|..+|+-..+|+.+..-.. |-+ .....+|.-+.|+..|-|....+
T Consensus 229 ~-~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~HilDP~TG~------P~~~~~~sVTVia~~~~~ADalaTal~ 295 (337)
T COG1477 229 A-VQGIVPLKDGAVATSGDYERYFEVDGKRYHHILDPKTGY------PIEHDLASVTVIAPSSMDADALATALF 295 (337)
T ss_pred C-EEEEEECCCCEEECCCCCEEEEEECCEEEEEECCCCCCC------CCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 6-057995279669725672568897897876550899998------875786169998588600788998887
No 79
>TIGR00223 panD aspartate 1-decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process.
Probab=46.83 E-value=11 Score=17.47 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=41.9
Q ss_pred CCCEEEEEECCCCCCCC-EEEEC-CCCCCCCCCCEEEEECCCCHHHHHC-CCCCCCCCCEEEEEECCCCEEE
Q ss_conf 78645998623336664-55213-5667788798999968870223243-4768998877999967990999
Q gi|254780741|r 285 TGPYTAMVCGRSCLAGD-IFGEF-HFEKPVKIGDRISFEDVAGYNINRK-NWFNGINMPTIAVKNVDGTIKA 353 (367)
Q Consensus 285 ~~~~~~~v~G~~C~~~D-~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~-~~Fn~~~~P~~v~~~~~g~~~~ 353 (367)
+.-+||.|.|.- -|. ++|-+ .--...++||.++|. +|. +|+ ..-+.+ +|.+++++++++.+.
T Consensus 53 ~RfsTY~I~gkk--RGs~~IcvNGAAAr~v~~GD~VII~---sy~-~M~d~Ea~~h-~P~va~~~~~Nei~~ 117 (127)
T TIGR00223 53 KRFSTYVIAGKK--RGSRVICVNGAAARLVSVGDVVIIL---SYV-TMSDEEARAH-KPKVALLEDDNEIKR 117 (127)
T ss_pred CCEEEEEECCCC--CCCEEEEECHHHHCEECCCCEEEEE---EEC-CCCHHHHHHC-CCEEEEECCCCHHHH
T ss_conf 712346651423--5872377050451100238899988---515-7885887524-980799819716787
No 80
>TIGR01379 thiL thiamine-monophosphate kinase; InterPro: IPR006283 This family represents thiamine-monophosphate kinase, an enzyme that converts thiamine monophosphate into thiamine pyrophosphate (TPP, coenzyme B1), an enzyme cofactor. Thiamine monophosphate may be derived from de novo synthesis or from unphosphorylated thiamine, known as vitamin B1. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step. ; GO: 0009030 thiamin phosphate kinase activity, 0009228 thiamin biosynthetic process.
Probab=44.97 E-value=21 Score=15.60 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=32.1
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 6066530565666147899999999989865088750875337766644556807899999987542165045
Q gi|254780741|r 158 VNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIY 230 (367)
Q Consensus 158 i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 230 (367)
++++||-........-.|+...-.+.++++. |-..+|.=+.=|+|-..+...++.|.+-+.+.+++|+++|+
T Consensus 48 ve~~HF~~~~~~Pe~~G~K~~avNlSDlAAm-GA~P~~~~~s~~~P~~~~~~~~~~f~~G~~~~~~~Y~~~Li 119 (336)
T TIGR01379 48 VEGVHFPPDTTPPEDLGWKAVAVNLSDLAAM-GATPKWFLLSLGLPSDLDEAWLEAFYDGLFELAKQYGVDLI 119 (336)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 2475788677898999999999749999730-57023223100168898889999999999998755398787
No 81
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=43.99 E-value=22 Score=15.50 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=9.8
Q ss_pred CCCCCCCCCHHHHHHH
Q ss_conf 7864357427888874
Q gi|254780741|r 138 RPFSRLGEKCKDKIES 153 (367)
Q Consensus 138 ~~~skfG~~~~~~~~~ 153 (367)
.|+-.||++..++.+.
T Consensus 143 sPl~e~gitk~eIre~ 158 (269)
T COG1606 143 SPLAEFGITKKEIREI 158 (269)
T ss_pred CHHHHHCCCHHHHHHH
T ss_conf 7188839759999999
No 82
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=43.89 E-value=22 Score=15.49 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=10.8
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q ss_conf 65666147899999999989
Q gi|254780741|r 166 NCENKSFLCFSAMLKNIEKE 185 (367)
Q Consensus 166 gs~~~~~~~~~~~l~~~~~~ 185 (367)
|---+..+.|.+.++.+.++
T Consensus 212 GlP~QT~~~~~~tL~~~~~l 231 (453)
T PRK13347 212 GLPHQTVESFRETLDKVIAL 231 (453)
T ss_pred CCCCCCHHHHHHHHHHHHHC
T ss_conf 48999899999999999831
No 83
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=43.67 E-value=22 Score=15.47 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=13.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHC-----CCCCCEEEEEEC
Q ss_conf 8868985672059999998612-----345614899635
Q gi|254780741|r 92 NCDTIIFNTVSQLNKFKDKAQK-----LHKKIGLRINPS 125 (367)
Q Consensus 92 ~~~~i~iDs~~El~~i~~~a~~-----~~~~I~lRinP~ 125 (367)
+|++-++=+.++|.+|.+..++ ...+|-+-+||+
T Consensus 58 GGGTPs~L~~~~l~~ll~~i~~~f~~~~~~EiTiE~nP~ 96 (377)
T PRK08599 58 GGGTPTALSAEQLERLLNAIHRTLPLSDLEEFTFEANPG 96 (377)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 998100099999999999999976977673279995515
No 84
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=41.24 E-value=24 Score=15.22 Aligned_cols=53 Identities=19% Similarity=0.341 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCCC---------CCCCCC--------------CCHHHHHHHHHHHHHCC--C----EEE---EEHHHHC
Q ss_conf 88750875337766---------644556--------------80789999998754216--5----045---3002201
Q gi|254780741|r 190 ITQIEWISLGGGIH---------FTDKDY--------------PVKDFCQRLKEFSEKYS--V----QIY---LEPGEAI 237 (367)
Q Consensus 190 ~~~l~~idiGGG~~---------~~~~~~--------------~~~~~~~~i~~~~~~~~--~----~l~---iEPGR~l 237 (367)
+..-.|||+|||=- +=..|. ..+..|+=+.+..++.+ + ||- .|-||-|
T Consensus 281 G~PANFLDvGGGA~~e~v~eA~~~vLsD~~VKvvfiNIFGGI~RCD~vA~G~v~A~~~~~~~VP~VvRL~GTN~E~G~~i 360 (389)
T TIGR01016 281 GKPANFLDVGGGASEERVKEALKLVLSDKSVKVVFINIFGGITRCDEVAKGLVEALKDVGVNVPVVVRLEGTNVEEGKKI 360 (389)
T ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHH
T ss_conf 89530224587889899999989873599820899970686001878878899998318853687898157887888899
Q ss_pred CCCCE
Q ss_conf 45741
Q gi|254780741|r 238 VTNTT 242 (367)
Q Consensus 238 v~~ag 242 (367)
+.++|
T Consensus 361 L~e~g 365 (389)
T TIGR01016 361 LQESG 365 (389)
T ss_pred HHHHC
T ss_conf 99727
No 85
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=41.16 E-value=24 Score=15.22 Aligned_cols=132 Identities=13% Similarity=0.183 Sum_probs=63.0
Q ss_pred HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHHH----HHHCC
Q ss_conf 78861388---689856720599999986123456148996357744310124557864357427-88887----43149
Q gi|254780741|r 86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KDKIE----SEIKN 157 (367)
Q Consensus 86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~~~~----~~~~~ 157 (367)
|..|.+++ ..||++|++-+.-|.+-|.+.+-+|.|=+ |.+...+.. ...-..|.+. ..+++ .....
T Consensus 8 L~~A~~~gYAvGaFN~NNlE~~qAIl~AAee~~SPVI~q~----SeGA~KY~G--kGd~~~G~~~~~~mV~~L~E~~~~t 81 (339)
T TIGR01859 8 LQKAKKEGYAVGAFNINNLEWTQAILQAAEEERSPVIVQV----SEGAIKYMG--KGDATLGYKVAVAMVKTLIESMSIT 81 (339)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEH----HHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9998646831142012168999999999987368755312----027874048--5317788999999999999867993
Q ss_pred C-EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHH---HHHHHHHHHHHCC--CEEEE
Q ss_conf 6-0665305656661478999999999898650887508753377666445568078---9999998754216--50453
Q gi|254780741|r 158 V-NGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKD---FCQRLKEFSEKYS--VQIYL 231 (367)
Q Consensus 158 i-~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~---~~~~i~~~~~~~~--~~l~i 231 (367)
| +-||.=.|| .|+..++.+..=|...- +.-...|+|+ ..+.+-++.+..+ +.+-.
T Consensus 82 VPVaLHLDHG~------s~E~c~~AI~aGfsSVM-------------IDgShlP~EEN~~~Tkkvve~Ah~~GDYvSVEa 142 (339)
T TIGR01859 82 VPVALHLDHGS------SYESCIKAIKAGFSSVM-------------IDGSHLPFEENVALTKKVVEIAHAKGDYVSVEA 142 (339)
T ss_pred EEEEEECCCCC------CHHHHHHHHHCCCCEEE-------------CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 20686468876------48999999964981672-------------024268788888888999999985199799999
Q ss_pred EHHHHCCCCCE
Q ss_conf 00220145741
Q gi|254780741|r 232 EPGEAIVTNTT 242 (367)
Q Consensus 232 EPGR~lv~~ag 242 (367)
|-||--=-.=+
T Consensus 143 ElG~~gG~ED~ 153 (339)
T TIGR01859 143 ELGTIGGIEDG 153 (339)
T ss_pred EECEECCEECC
T ss_conf 84303527627
No 86
>KOG0996 consensus
Probab=41.14 E-value=9.4 Score=17.96 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHHHH--CCCCEEEECCCHHHHHHHH
Q ss_conf 03478861--3886898567205999999
Q gi|254780741|r 83 DCEIDAVL--SNCDTIIFNTVSQLNKFKD 109 (367)
Q Consensus 83 ~~el~~a~--~~~~~i~iDs~~El~~i~~ 109 (367)
++.++.|. ....++++||++|-.+++.
T Consensus 704 d~~~r~aFYfaLrdtLV~d~LeQAtRiay 732 (1293)
T KOG0996 704 DEKFRPAFYFALRDTLVADNLEQATRIAY 732 (1293)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 78879999999850455167899888863
No 87
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=40.13 E-value=25 Score=15.11 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=14.5
Q ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEE
Q ss_conf 6459986233366645521356677887989999
Q gi|254780741|r 287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISF 320 (367)
Q Consensus 287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i 320 (367)
.....|+|..|++. -.++.-+++|+...|
T Consensus 326 d~r~NVvG~I~~~d-----~~LLd~I~p~~~F~f 354 (357)
T pfam05913 326 DERVNVVGRIIEED-----LPLLDYIKPGQKFKL 354 (357)
T ss_pred CCCEEEEEEECHHH-----HHHHHHCCCCCEEEE
T ss_conf 88634789988888-----779986589980788
No 88
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=39.52 E-value=26 Score=15.05 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=25.5
Q ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 689856720599999986123456148996357
Q gi|254780741|r 94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV 126 (367)
Q Consensus 94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~ 126 (367)
.++.+++.....++.+..++.+.+.||=+||+.
T Consensus 85 it~H~Ea~~~~~~~i~~Ik~~g~k~GlAlnP~T 117 (210)
T PRK08005 85 IFIHAESVQNPSEILADIRAIGAKAGLALNPAT 117 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 999356776999999999974980788837999
No 89
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=39.22 E-value=26 Score=15.08 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=11.9
Q ss_pred HHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 887431496066530565666147899999999
Q gi|254780741|r 150 KIESEIKNVNGLMFHNNCENKSFLCFSAMLKNI 182 (367)
Q Consensus 150 ~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~ 182 (367)
++..+.-++.||=|-. +-+.....|.-.|...
T Consensus 19 ~vs~L~GKvVgLYFSA-~WCpPCr~FTP~L~~f 50 (146)
T cd03008 19 IVARLENRVLLLFFGA-VVSPQCQLFAPKLKDF 50 (146)
T ss_pred HHHHCCCCEEEEEEEC-CCCCHHHHHHHHHHHH
T ss_conf 9998189999999747-8681487677899999
No 90
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=38.99 E-value=26 Score=15.00 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=30.0
Q ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 6066530565666147899999999989865088750875337766644556807899999987542165045
Q gi|254780741|r 158 VNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIY 230 (367)
Q Consensus 158 i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 230 (367)
++|.||+.....-..-.|..+...+.++++.- -...++=+.=++|...+...++++.+-+.+.++++++.++
T Consensus 48 ve~~HF~~~~~~p~~iG~~av~~n~SDiaamG-a~P~~~~~sl~lP~~~~~~~l~~i~~Gi~~~~~~~gv~lv 119 (320)
T PRK05731 48 VEGVHFRPDWSSPEDLGYKALAVNLSDLAAMG-ARPAAFLLALALPKDVDEAWLEALADGLFALADRYGAELI 119 (320)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEE
T ss_conf 65767787889999999999998788899718-9722788850268864399999999999999998395696
No 91
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II; InterPro: IPR006411 Members of this family are class II examples of the glycolytic enzyme fructose-bisphosphate aldolase (FBA). They represent one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterised proteins. This family is well-conserved and includes characterised FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis.
Probab=38.62 E-value=27 Score=14.96 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HCCCEEEEECC--CCCCCCHHHHHHHH
Q ss_conf 999999861234561489963577443101245578643574278888743--14960665305--65666147899999
Q gi|254780741|r 104 LNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE--IKNVNGLMFHN--NCENKSFLCFSAML 179 (367)
Q Consensus 104 l~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~--~~~i~Gih~H~--gs~~~~~~~~~~~l 179 (367)
-+.+..+|+..+..|. |+.-++.+.+.- + .|....-+.-++. ..+-=.++-|- +|....-+.++-.-
T Consensus 92 A~~~h~iA~~YGvPVv-rLHTDHCAKkLL------p--sw~dGlLe~~ek~f~~~G~PLFsSHM~DLSeep~~ENi~ic~ 162 (365)
T TIGR01520 92 AHYVHSIAEHYGVPVV-RLHTDHCAKKLL------P--SWVDGLLEADEKYFSAHGKPLFSSHMLDLSEEPIEENIEICV 162 (365)
T ss_pred HHHHHHHHHHCCCCEE-EECCCCCCCCCC------C--CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 8899987532788827-735775741047------3--203776434468996489977100231234376577899999
Q ss_pred HHHHHHHHHCCCCCEE-EEECCC
Q ss_conf 9999898650887508-753377
Q gi|254780741|r 180 KNIEKEFGHFITQIEW-ISLGGG 201 (367)
Q Consensus 180 ~~~~~~~~~~~~~l~~-idiGGG 201 (367)
+++.+. ++...-|+. |=|-||
T Consensus 163 kyLkRm-A~~~~~LEiEiGitGG 184 (365)
T TIGR01520 163 KYLKRM-AAIKMWLEIEIGITGG 184 (365)
T ss_pred HHHHHH-HHHCCCEEEEECCCCC
T ss_conf 999865-0411303412312365
No 92
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.99 E-value=28 Score=14.80 Aligned_cols=23 Identities=13% Similarity=0.096 Sum_probs=14.4
Q ss_pred CCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 98885689779999999999999
Q gi|254780741|r 1 MIKTPYYLIDKQKLLNNLDTALY 23 (367)
Q Consensus 1 ~i~TP~yv~d~~~i~~n~~~~~~ 23 (367)
||.+==+-++.+.|++.+..+..
T Consensus 6 mLD~aR~f~s~~~ik~~ID~Ma~ 28 (326)
T cd06564 6 MLDVGRKYYSMDFLKDIIKTMSW 28 (326)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH
T ss_conf 78636888589999999999998
No 93
>pfam05114 DUF692 Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.
Probab=36.42 E-value=29 Score=14.74 Aligned_cols=93 Identities=11% Similarity=0.085 Sum_probs=54.4
Q ss_pred HHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEECCC----CCCCCCCCCCHHHHHHHHH
Q ss_conf 788887431496066530565666147899999999989865--0887508753377----6664455680789999998
Q gi|254780741|r 147 CKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH--FITQIEWISLGGG----IHFTDKDYPVKDFCQRLKE 220 (367)
Q Consensus 147 ~~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~--~~~~l~~idiGGG----~~~~~~~~~~~~~~~~i~~ 220 (367)
.+++.+....-+.|++.-+||...-...+-+.++.+.+.++- +-..+.|.-.||- +|+++....++-.++.+++
T Consensus 47 L~~i~e~yPv~~HGv~LSlGs~~~ld~~~L~~l~~l~~~~~~~~~SeHL~ws~~~g~l~dLLPlP~T~eal~~v~~ri~~ 126 (275)
T pfam05114 47 LDRLRERLPVALHGLSLSLGGAAPLDAELLRALKELAERHDPPLVSEHLSYCRDGGHLYDLLPLPFTEEAVDHVAERIRV 126 (275)
T ss_pred HHHHHHHCCEECCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999729976035640258999879999999999999758773616325761698435567656789999999999999
Q ss_pred HHHHCCCEEEEEHHHHCCC
Q ss_conf 7542165045300220145
Q gi|254780741|r 221 FSEKYSVQIYLEPGEAIVT 239 (367)
Q Consensus 221 ~~~~~~~~l~iEPGR~lv~ 239 (367)
..+.++..+.+|==.+.+.
T Consensus 127 vQd~L~rplllEN~S~Y~~ 145 (275)
T pfam05114 127 AQDALERPLAVENISYYLH 145 (275)
T ss_pred HHHHHCCCEEEECHHHHCC
T ss_conf 9998588679836788537
No 94
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=35.59 E-value=30 Score=14.65 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=39.3
Q ss_pred EEHHHHCCCCCEEEEEEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCC
Q ss_conf 3002201457418887887863044-333433335656566400134553000247864599862333666455213566
Q gi|254780741|r 231 LEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFE 309 (367)
Q Consensus 231 iEPGR~lv~~ag~lv~~V~~~K~~~-~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~ 309 (367)
+++|+.++++-| ++.+|..+.++. +-..+.|.. ...+....+.+-....-.+..|..... -....-
T Consensus 144 V~~~~~Vi~~~G-LVG~V~~V~~~tS~V~Lltd~~-----------~~i~v~i~r~~~~~i~~~d~~~~~l~~-~~~~~~ 210 (284)
T COG1792 144 IKKGMPVVAEGG-LVGKVVEVSKNTSRVLLLTDVN-----------SKIPVKINRGDIGVIVGGDGENDLLLL-VYLPPN 210 (284)
T ss_pred CCCCCEEEECCC-CEEEEEEECCCEEEEEEEECCC-----------CCEEEEECCCCCEEEEECCCCCCCEEE-EECCCC
T ss_conf 668964796683-1899999727656999842466-----------103688515650489952788862236-623676
Q ss_pred CCCCCCCEEEEECCC
Q ss_conf 778879899996887
Q gi|254780741|r 310 KPVKIGDRISFEDVA 324 (367)
Q Consensus 310 ~~l~~GD~l~i~~~G 324 (367)
.+++.||.++-..-|
T Consensus 211 ~~i~~GD~vvTSGlg 225 (284)
T COG1792 211 SDIKEGDLVVTSGLG 225 (284)
T ss_pred CCCCCCCEEEECCCC
T ss_conf 776678889966789
No 95
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=35.55 E-value=30 Score=14.65 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCCCCCEE--EEEC-CC-CHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHH
Q ss_conf 78879899--9968-87-02232434768998877999967990999973898999874
Q gi|254780741|r 311 PVKIGDRI--SFED-VA-GYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNN 365 (367)
Q Consensus 311 ~l~~GD~l--~i~~-~G-AY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~ 365 (367)
.+.+||++ .+.. .| .|+....=-| |+| +-.++||+++++.--+.+|+.+.
T Consensus 260 GTpeG~~vSm~V~sp~GNpYGip~Gi~f-SfP----v~~~~~G~w~iV~Gl~~~df~r~ 313 (329)
T TIGR01759 260 GTPEGDWVSMGVYSPDGNPYGIPEGIIF-SFP----VTSKGDGEWEIVEGLELDDFVRK 313 (329)
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCEE-ECC----EEEEECCEEEEECCCCCCHHHHH
T ss_conf 9899762676653788787878888278-330----68741732797368878989999
No 96
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=35.39 E-value=17 Score=16.25 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHCCCEEE---EEHHHHCCCCCEEEEEEEEEE
Q ss_conf 807899999987542165045---300220145741888788786
Q gi|254780741|r 210 PVKDFCQRLKEFSEKYSVQIY---LEPGEAIVTNTTTLNTTVLDI 251 (367)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~l~---iEPGR~lv~~ag~lv~~V~~~ 251 (367)
.+..+++.+++..++ .+++ .-..-.-.|+.-+=|+++.++
T Consensus 166 Nv~r~a~~ike~s~~--aQFIVIThr~~tme~AD~L~GV~~~~~~ 208 (212)
T cd03274 166 NVSIVANYIKERTKN--AQFIVISLRNNMFELADRLVGIYKTNNC 208 (212)
T ss_pred HHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHEEEEEEECCC
T ss_conf 899999999984779--7699998588999851517989973785
No 97
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=35.37 E-value=30 Score=14.63 Aligned_cols=50 Identities=8% Similarity=-0.076 Sum_probs=25.4
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHC
Q ss_conf 898650887508753377666445568078999999875421----6-50453002201
Q gi|254780741|r 184 KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAI 237 (367)
Q Consensus 184 ~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~l 237 (367)
+.+.+.+..=--+|+==|+| ....+++.+.++.+.+-- . -.|.+|||..+
T Consensus 146 ~~~r~~Gf~nIsiDLIyGlP----gQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~ 200 (353)
T PRK05904 146 NLLHKNGIYNISCDFLYCLP----ILKLKDLDEVFNFILKHKINHISFYSLEIKEGSIL 200 (353)
T ss_pred HHHHHHCCCEEEECEEECCC----CCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHH
T ss_conf 99998199736004263599----99999999999999965999178888898579732
No 98
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=34.19 E-value=31 Score=14.51 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 6566614789999999998
Q gi|254780741|r 166 NCENKSFLCFSAMLKNIEK 184 (367)
Q Consensus 166 gs~~~~~~~~~~~l~~~~~ 184 (367)
|--.+..+.|++.++.+..
T Consensus 213 GLP~QT~~~~~~tl~~~~~ 231 (456)
T PRK09249 213 GLPKQTPESFARTLEKVLE 231 (456)
T ss_pred CCCCCCHHHHHHHHHHHHC
T ss_conf 6998769999999999965
No 99
>PRK13518 carboxylate-amine ligase; Provisional
Probab=33.98 E-value=32 Score=14.49 Aligned_cols=140 Identities=12% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC----HHHHHHHH-----HCCCEEEEECCCCCCCCH
Q ss_conf 059999998612345614899635774431012455786435742----78888743-----149606653056566614
Q gi|254780741|r 102 SQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK----CKDKIESE-----IKNVNGLMFHNNCENKSF 172 (367)
Q Consensus 102 ~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~----~~~~~~~~-----~~~i~Gih~H~gs~~~~~ 172 (367)
.||..+.....+.-.+.++|+- ..++|+... +...-++ +.++.+.. ..-+.|.|+|+|....+
T Consensus 75 ~~L~~~R~~l~~aA~~~G~~l~---a~GThP~~~----w~~~~it~~~RY~~l~~~~~~~ar~~li~G~HVHVGv~d~e- 146 (357)
T PRK13518 75 DALREVRDALVAHAEEHGFRIA---AAGLHPGAK----WRELEHAEKPRYRSQLDRIQYPQHRNTTAGLHIHVGVDDPD- 146 (357)
T ss_pred HHHHHHHHHHHHHHHHCCCEEE---EECCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHH-
T ss_conf 9999999999999998698899---626898888----77688899778999999988999987461037996179789-
Q ss_pred HHHHHHHHHHHHHHHHC----CCCCEEEEECCCC-----------CCC---CCCCCCHHHHHHHHHHHHHC---CC-EEE
Q ss_conf 78999999999898650----8875087533776-----------664---45568078999999875421---65-045
Q gi|254780741|r 173 LCFSAMLKNIEKEFGHF----ITQIEWISLGGGI-----------HFT---DKDYPVKDFCQRLKEFSEKY---SV-QIY 230 (367)
Q Consensus 173 ~~~~~~l~~~~~~~~~~----~~~l~~idiGGG~-----------~~~---~~~~~~~~~~~~i~~~~~~~---~~-~l~ 230 (367)
.-..++..+...+..+ ..+.=|---=-|| |-. ..-.++++|...+..+.+.- +. .+|
T Consensus 147 -~av~v~n~lr~~LP~LlALSAnSPFw~G~DTG~aS~R~~~~~~~P~aG~P~~f~s~~~y~~~v~~L~~tG~I~d~~~i~ 225 (357)
T PRK13518 147 -KAVWVANELRWHMPVLLALSANSPYWNGFDTGLASARAKIFEALPNTGMPTAFEDYEAFQAFERRMVETGSIEDRGELW 225 (357)
T ss_pred -HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf -9999999888778999999717942048888751089999972764799954489999999999999739827788458
Q ss_pred --EEHHHHCCCCCEEEEEEEEEEECC
Q ss_conf --300220145741888788786304
Q gi|254780741|r 231 --LEPGEAIVTNTTTLNTTVLDISEN 254 (367)
Q Consensus 231 --iEPGR~lv~~ag~lv~~V~~~K~~ 254 (367)
+= .....+++-.||-|+--+
T Consensus 226 WDiR----Ps~~~pTvEvRV~D~~~~ 247 (357)
T PRK13518 226 YDVR----PHSGHGTVEVRAPDAQAD 247 (357)
T ss_pred EEEC----CCCCCCCEEEECCCCCCC
T ss_conf 9944----269999725765788899
No 100
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=33.48 E-value=32 Score=14.43 Aligned_cols=19 Identities=5% Similarity=-0.130 Sum_probs=8.8
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 6566614789999999998
Q gi|254780741|r 166 NCENKSFLCFSAMLKNIEK 184 (367)
Q Consensus 166 gs~~~~~~~~~~~l~~~~~ 184 (367)
|--.+..+.|.+.++.+..
T Consensus 168 GlP~Qt~~~~~~~l~~~~~ 186 (376)
T PRK05628 168 GTPGETDDDLRRSLDAALE 186 (376)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 7999999999999999973
No 101
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=33.34 E-value=32 Score=14.42 Aligned_cols=98 Identities=17% Similarity=-0.002 Sum_probs=45.4
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHHHH---------HHHHHHHHHHH
Q ss_conf 561489963577443101245578643574278888743149606653056566614789---------99999999898
Q gi|254780741|r 116 KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCF---------SAMLKNIEKEF 186 (367)
Q Consensus 116 ~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~~~---------~~~l~~~~~~~ 186 (367)
.+|-+-+||+.- +.+.+......+|.-+++ |-|+.+.+.. .++++.+ +.+
T Consensus 86 ~EiTiE~nP~~~------------------~~~~l~~l~~~GvNRiSi--GVQSf~d~~Lk~lgR~H~~~~~~~ai-~~~ 144 (351)
T PRK08446 86 CEITTEANPNSA------------------TLAWLKGMKNLGVNRISF--GVQSFHEDKLKFLGRIHSKNQIIKAI-ENA 144 (351)
T ss_pred CEEEEEECCCCC------------------CHHHHHHHHHCCCCEEEE--EECCCCHHHHHHHCCCCCHHHHHHHH-HHH
T ss_conf 359997676868------------------999999998649876999--73137689999818998899999999-999
Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCC
Q ss_conf 650887508753377666445568078999999875421----6-504530022014
Q gi|254780741|r 187 GHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIV 238 (367)
Q Consensus 187 ~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv 238 (367)
.+.+.+---+|+==|+ |....+++.+.++.+.+-- . ..|.+|||..+.
T Consensus 145 r~~gf~niniDLIyGl----P~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~ 197 (351)
T PRK08446 145 KKAGFKNISIDLIYNT----KLDNKKLLKEELKLAKELPITHLSAYALTIEENTPFE 197 (351)
T ss_pred HHCCCCEECHHHHCCC----CCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHH
T ss_conf 9849963422553179----9999999999999997489697974230446998233
No 102
>PRK13516 carboxylate-amine ligase; Provisional
Probab=32.86 E-value=33 Score=14.37 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHH-----CCCEEEEECCCCCCCC
Q ss_conf 59999998612345614899635774431012455-786435742788887431-----4960665305656661
Q gi|254780741|r 103 QLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPN-RPFSRLGEKCKDKIESEI-----KNVNGLMFHNNCENKS 171 (367)
Q Consensus 103 El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~-~~~skfG~~~~~~~~~~~-----~~i~Gih~H~gs~~~~ 171 (367)
||..+.........+.++|+- ..++|+..... .+-+. +.-+.++.+... .-+.|.|+|+|....+
T Consensus 75 ~L~~~R~~l~~~A~~~g~~l~---a~GthP~~~~~~~~it~-~~RY~~l~~~~~~~a~~~~i~G~HVHVgv~d~e 145 (372)
T PRK13516 75 QLSAMRDVLVQAADDLNLGIC---GGGTHPFQQWQRQRICD-NPRFQYLSELYGYLAKQFTVFGQHVHIGCPSGD 145 (372)
T ss_pred HHHHHHHHHHHHHHHCCCEEE---CCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHCEEEEECCCCHH
T ss_conf 999999999999998298776---33789888755477896-278999999999999988461026884579788
No 103
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=32.85 E-value=33 Score=14.37 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=10.6
Q ss_pred HCCCCCEEEEECCCCC
Q ss_conf 5088750875337766
Q gi|254780741|r 188 HFITQIEWISLGGGIH 203 (367)
Q Consensus 188 ~~~~~l~~idiGGG~~ 203 (367)
++..-=+.||+|||++
T Consensus 146 ~L~~V~~lIDVGGGIG 161 (306)
T TIGR02716 146 KLDDVKKLIDVGGGIG 161 (306)
T ss_pred HHHCCCEEEECCCCHH
T ss_conf 1631325433388877
No 104
>PRK12425 fumarate hydratase; Provisional
Probab=32.79 E-value=28 Score=14.81 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6147899999999989865088750875337
Q gi|254780741|r 170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG 200 (367)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG 200 (367)
+.+..|+..++...+.+.+....+..+++||
T Consensus 197 Qef~~~a~~l~~~~~rl~~~~~~l~~l~lGg 227 (464)
T PRK12425 197 QELSAFVAQLDYAERAIRAALPAVYELAQGG 227 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999999999999999852776
No 105
>TIGR02062 RNase_B exoribonuclease II; InterPro: IPR011804 This family consists of exoribonuclease II (RNase II), the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.; GO: 0003723 RNA binding, 0008859 exoribonuclease II activity, 0006401 RNA catabolic process.
Probab=32.50 E-value=33 Score=14.33 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=51.3
Q ss_pred CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCEEE
Q ss_conf 5741888788786304433343333565656640013455300024786459986233366-64552
Q gi|254780741|r 239 TNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLA-GDIFG 304 (367)
Q Consensus 239 ~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~-~D~l~ 304 (367)
+.-.-+-++|+||.+.|-+.=.|+-|...+||.++++.-...+..+...-+..|-|-+.+- +|++-
T Consensus 581 ~~~~~F~AEi~Dv~R~G~Rv~LleNGA~~FIPA~~Lh~~keel~~n~e~G~v~Ikge~~YKi~D~~~ 647 (664)
T TIGR02062 581 AKNTRFEAEIVDVSRAGMRVRLLENGASAFIPAAFLHDNKEELVCNQEEGTVYIKGEVVYKIGDVIE 647 (664)
T ss_pred CCCCCEEEEEEEECCCCCEEEEECCCCCHHCCHHHHCCCCCEEEEECCCCEEEEEEEEEEEEEEEEE
T ss_conf 3686124468872478743431205631111434430332136650687638871078986610699
No 106
>PRK05409 hypothetical protein; Provisional
Probab=32.44 E-value=33 Score=14.32 Aligned_cols=153 Identities=11% Similarity=0.119 Sum_probs=77.0
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH--CCCCCEEEEECCC-----CCCCCCCCCCHHHHHHHHH
Q ss_conf 88887431496066530565666147899999999989865--0887508753377-----6664455680789999998
Q gi|254780741|r 148 KDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGH--FITQIEWISLGGG-----IHFTDKDYPVKDFCQRLKE 220 (367)
Q Consensus 148 ~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~--~~~~l~~idiGGG-----~~~~~~~~~~~~~~~~i~~ 220 (367)
+++.+....-+.|+..=+||...-...+-+.++.+.+.++- +-..+.|--.+|- +|+++....++-+++.++.
T Consensus 51 ~~i~e~~Pv~~HGv~LSlGs~~~ld~~~L~~l~~l~~~~~~~~~SeHL~~s~~~g~~l~dLLPlP~T~eal~~v~~ri~~ 130 (283)
T PRK05409 51 RAIRERYPLSLHGVSLSLGGAAPLDKDHLKRLKALADRYQPALVSEHLAWSSHGGHHLYDLLPLPYTEEALDHVAERIDQ 130 (283)
T ss_pred HHHHHHCCEEEECCEEECCCCCCCCHHHHHHHHHHHHHHCCCCEECCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99996098553012121478898999999999999998586311041356506982304357767789999999999999
Q ss_pred HHHHCCCEEEEEHHHHCCCCCEEEEEEEEEE----ECCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 7542165045300220145741888788786----304433343333------565656640013455300024786459
Q gi|254780741|r 221 FSEKYSVQIYLEPGEAIVTNTTTLNTTVLDI----SENIKNLVIVDS------SVEAHVPDYLLYQESATIYPNTGPYTA 290 (367)
Q Consensus 221 ~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~----K~~~~~~v~vd~------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (367)
..+.++.++.+|-=.+.+.-.+.-..+.-.. ++++ -.+.+|. +.|+...|.-+. ...|...-...
T Consensus 131 vQd~L~r~lllEN~s~Y~~~~~~~m~E~eFl~~l~~~tg-cgLLLDvnNvyVna~Nhg~Dp~~~l----~~lP~~rV~ei 205 (283)
T PRK05409 131 VQDILGRPLLLENPSSYLAFPDSEMSEWEFLNEVAERTG-CGLLLDVNNVYVNAVNHGFDPLAYL----DALPLERVAYI 205 (283)
T ss_pred HHHHHCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHCC-CEEEEEECCCEEEEECCCCCHHHHH----HHCCHHHHEEE
T ss_conf 999859985871668754788788799999999998639-7199973340453000799999999----84899782656
Q ss_pred EEECCCCCCCCEEEE
Q ss_conf 986233366645521
Q gi|254780741|r 291 MVCGRSCLAGDIFGE 305 (367)
Q Consensus 291 ~v~G~~C~~~D~l~~ 305 (367)
+|+|..-..++.+.+
T Consensus 206 HlAG~~~~~~~~~iD 220 (283)
T PRK05409 206 HLAGHDDEGGDLLID 220 (283)
T ss_pred ECCCCCCCCCCEEEE
T ss_conf 655665668985785
No 107
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=31.94 E-value=34 Score=14.27 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 478999999999898650887508753377
Q gi|254780741|r 172 FLCFSAMLKNIEKEFGHFITQIEWISLGGG 201 (367)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~l~~idiGGG 201 (367)
.+.+..+++.+.++|.+.+...++|.|||-
T Consensus 179 y~fl~~vl~ev~~lF~~~~~P~~yiHiGGD 208 (445)
T cd06569 179 YRFVDKVIDEIARMHQEAGQPLTTIHFGGD 208 (445)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 999999999999998634798533664243
No 108
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=31.92 E-value=12 Score=17.27 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=9.3
Q ss_pred HHHHHCCCCCE------EEEECCCC
Q ss_conf 89865088750------87533776
Q gi|254780741|r 184 KEFGHFITQIE------WISLGGGI 202 (367)
Q Consensus 184 ~~~~~~~~~l~------~idiGGG~ 202 (367)
+.+++-+++|+ .|-+|||.
T Consensus 38 yylA~~gPDLKv~vlEr~la~GGG~ 62 (283)
T TIGR00292 38 YYLAKEGPDLKVVVLERKLAFGGGS 62 (283)
T ss_pred HHHHHCCCCEEEEEEEECCCCCCCC
T ss_conf 9998429980699985110268986
No 109
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=31.27 E-value=35 Score=14.20 Aligned_cols=206 Identities=14% Similarity=0.182 Sum_probs=89.2
Q ss_pred EECCCCHHHHHHHHH---------HCCEEEEECH------HH-HHHHHCCCCCCCEE--E---C-CCCC---H----HHH
Q ss_conf 410599999999985---------1874898079------99-98987368801088--5---3-7778---0----347
Q gi|254780741|r 36 LKCFAAWGMFDTLNQ---------YMDGTTSSSL------YE-VMLGHEKFGGETHA--Y---N-VAYK---D----CEI 86 (367)
Q Consensus 36 ~KaN~~~~il~~l~~---------~g~g~dv~S~------~E-~~la~~g~~~~~i~--~---~-~~~~---~----~el 86 (367)
|.+-.-..||+.|-+ .|+=||++=- .| ||.-++..+..++. . | -+++ | ..+
T Consensus 18 mRteDMLPi~~~LD~vGfwSLEvWGGATFDaC~RFL~EDPW~RLR~lk~~~pnT~L~MLLRGQNLlGYRHYADDVVe~FV 97 (616)
T TIGR01108 18 MRTEDMLPILEKLDDVGFWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTKLQMLLRGQNLLGYRHYADDVVEAFV 97 (616)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 57313689998750249556520244105578442488855899999973578751234204542344158436899999
Q ss_pred HHHHCCC-CEE-EECCCHHHHHHHHH---HHCCCC-CCEEEEEECCCCCCC-CCC-CCCCCCCCCCCCH-----------
Q ss_conf 8861388-689-85672059999998---612345-614899635774431-012-4557864357427-----------
Q gi|254780741|r 87 DAVLSNC-DTI-IFNTVSQLNKFKDK---AQKLHK-KIGLRINPSVSYSKF-ILA-DPNRPFSRLGEKC----------- 147 (367)
Q Consensus 87 ~~a~~~~-~~i-~iDs~~El~~i~~~---a~~~~~-~I~lRinP~~~~~~~-~~~-~~~~~~skfG~~~----------- 147 (367)
+.|++|| ..| ++|.++.-.++..- +|++++ .|=.=|.-.+|..++ +.| +-+.+--.+|++.
T Consensus 98 ~~a~~NG~DVFRiFDALND~RNl~~ai~a~Kk~g~dHvQg~iSYTtSPvHTl~~yl~la~~L~~~G~DSI~IKDMaGlLT 177 (616)
T TIGR01108 98 KKAVENGLDVFRIFDALNDPRNLQKAIEAAKKHGADHVQGAISYTTSPVHTLEKYLELAKELLEMGVDSICIKDMAGLLT 177 (616)
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 99997598089951245887789999999997389789999712468436788899999999981886055202004644
Q ss_pred ----HHHHHHHHCCCEE-EEECCCCCCCCH---HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--------CC---
Q ss_conf ----8888743149606-653056566614---7899999999989865088750875337766644--------55---
Q gi|254780741|r 148 ----KDKIESEIKNVNG-LMFHNNCENKSF---LCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTD--------KD--- 208 (367)
Q Consensus 148 ----~~~~~~~~~~i~G-ih~H~gs~~~~~---~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~--------~~--- 208 (367)
-|+..+....+ | +-.|+|||+..- -++.++++.=.+.++- -++-+.-|=|+|.+. -.
T Consensus 178 P~~AYELV~alK~~~-~n~pvhLH~H~TtGmA~~AllkA~EAG~d~iDT---AisS~S~gtSHPptE~lv~~L~~~gyD~ 253 (616)
T TIGR01108 178 PKVAYELVSALKKEF-GNLPVHLHSHATTGMAEMALLKAIEAGADMIDT---AISSMSGGTSHPPTETLVAALRGTGYDT 253 (616)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHH---CCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 158999999997423-974688632472337999999888707880020---0552347888874799999970578743
Q ss_pred -CCC---HHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEE
Q ss_conf -680---7899999987542165045300220145741888788
Q gi|254780741|r 209 -YPV---KDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTV 248 (367)
Q Consensus 209 -~~~---~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V 248 (367)
.++ ..+.+.++++.++|. =++|+ ..--.|+-++|.+|
T Consensus 254 gld~~~L~~i~~YFr~VRkKY~--~fle~-~~~~~D~RiLv~Qv 294 (616)
T TIGR01108 254 GLDIELLLEIADYFRKVRKKYS--QFLES-QLKGPDSRILVSQV 294 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHCCC-CCCCCCCEEEEEEC
T ss_conf 1027999999999999999998--86076-77788844899736
No 110
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=31.02 E-value=35 Score=14.17 Aligned_cols=19 Identities=16% Similarity=-0.046 Sum_probs=11.1
Q ss_pred HHCCCCCE--EEEECCCCCCC
Q ss_conf 65088750--87533776664
Q gi|254780741|r 187 GHFITQIE--WISLGGGIHFT 205 (367)
Q Consensus 187 ~~~~~~l~--~idiGGG~~~~ 205 (367)
.+.|..-+ +||-|=||+-+
T Consensus 160 ~~~Gi~~~~IiiDPG~GFgKt 180 (257)
T cd00739 160 ESAGVARNRIILDPGIGFGKT 180 (257)
T ss_pred HHCCCCCCEEEEECCCCCCCC
T ss_conf 987998251997088787888
No 111
>pfam04537 Herpes_UL55 Herpesvirus UL55 protein. In infected cells, UL55 is associated with the nuclear matrix, and found adjacent to compartments containing the capsid protein ICP35. UL55 was not detected in assembled virions. It is thought that UL55 may play a role in virion assembly or maturation.
Probab=30.67 E-value=36 Score=14.13 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=20.4
Q ss_pred HCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHH
Q ss_conf 149606653056566-61478999999999898
Q gi|254780741|r 155 IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEF 186 (367)
Q Consensus 155 ~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~ 186 (367)
...|.||.||+++.+ .+.+-|..+.....++.
T Consensus 127 ~~~I~Gi~yHCHCk~PFS~eCW~gA~aA~~hi~ 159 (171)
T pfam04537 127 EVTIEGLCYHCHCKTPFSLECWMGAFAAYEHIV 159 (171)
T ss_pred CEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 068877898631499988899988999999999
No 112
>PRK06836 aspartate aminotransferase; Provisional
Probab=29.97 E-value=37 Score=14.06 Aligned_cols=103 Identities=10% Similarity=0.028 Sum_probs=45.5
Q ss_pred CCCCCEEECCCCCH-HH--HHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88010885377780-34--78861388689856720599999986123456-1489963577443101245578643574
Q gi|254780741|r 70 FGGETHAYNVAYKD-CE--IDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK-IGLRINPSVSYSKFILADPNRPFSRLGE 145 (367)
Q Consensus 70 ~~~~~i~~~~~~~~-~e--l~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~-I~lRinP~~~~~~~~~~~~~~~~skfG~ 145 (367)
.+++.|+.+++-+. -. +..+++-|+.+.+.+..= ......++..+.+ +.+... . ..|..
T Consensus 95 ~~pe~Iiit~Ga~~al~~~~~~ll~pGD~Vlvp~P~y-~~y~~~~~~~g~~~v~v~~~---------------~-e~~~~ 157 (396)
T PRK06836 95 LTADHIVMTCGAAGALNVVLKALLNPGDEVIIFAPYF-VEYKFYVDNHGGKLVVVPPD---------------T-EDFQP 157 (396)
T ss_pred CCHHHEEECCCHHHHHHHHHHHHCCCCCEEEECCCCC-HHHHHHHHHCCCEEEEECCC---------------C-CCCCC
T ss_conf 9589889858879999999999669999899827865-06899999849979993167---------------6-56767
Q ss_pred CHHHHHHHHHCCCEEE---EECCCCC-CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 2788887431496066---5305656-661478999999999898650
Q gi|254780741|r 146 KCKDKIESEIKNVNGL---MFHNNCE-NKSFLCFSAMLKNIEKEFGHF 189 (367)
Q Consensus 146 ~~~~~~~~~~~~i~Gi---h~H~gs~-~~~~~~~~~~l~~~~~~~~~~ 189 (367)
+.+++.++...+.+.+ .-|.=++ ..+.+.+++..+.+.+...++
T Consensus 158 d~~~l~~~i~~~tk~iilnsP~NPTG~v~s~e~l~~i~~l~~~~~~~~ 205 (396)
T PRK06836 158 DLDALEAAITPKTKAVIINSPNNPTGVIYSEETLKALGALLEEKSKEY 205 (396)
T ss_pred CHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999736756629998689898998679999999999999865752
No 113
>TIGR00575 dnlj DNA ligase, NAD-dependent; InterPro: IPR001679 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This family is predominantly composed of NAD-dependent bacterial DNA ligases. They are proteins of about 75 to 85 Kd whose sequence is well conserved , . They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair.
Probab=29.91 E-value=37 Score=14.05 Aligned_cols=12 Identities=42% Similarity=0.565 Sum_probs=6.1
Q ss_pred HCCEEEEECHHH
Q ss_conf 187489807999
Q gi|254780741|r 51 YMDGTTSSSLYE 62 (367)
Q Consensus 51 ~g~g~dv~S~~E 62 (367)
..||+.++=.||
T Consensus 110 KiDG~s~~L~Ye 121 (706)
T TIGR00575 110 KIDGLSISLTYE 121 (706)
T ss_pred CCCCEEEEEEEE
T ss_conf 427157889983
No 114
>pfam09871 DUF2098 Uncharacterized protein conserved in archaea (DUF2098). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.79 E-value=31 Score=14.53 Aligned_cols=33 Identities=33% Similarity=0.326 Sum_probs=22.0
Q ss_pred EHHHHCCCCCEEEEEEEEEEEC-CCCCCCCCCCC
Q ss_conf 0022014574188878878630-44333433335
Q gi|254780741|r 232 EPGEAIVTNTTTLNTTVLDISE-NIKNLVIVDSS 264 (367)
Q Consensus 232 EPGR~lv~~ag~lv~~V~~~K~-~~~~~v~vd~g 264 (367)
+-|.++--..--++.+|+++|+ ++..|+.+|..
T Consensus 4 ~vG~~VrY~~TgT~G~V~~ik~e~~~~wv~LDst 37 (91)
T pfam09871 4 KVGSYVRYINTGTVGTVKDIKEENGRTWVLLDST 37 (91)
T ss_pred EECCEEEECCCCCEEEEEEEEECCCCEEEEEECC
T ss_conf 1165699767995688999897289769998268
No 115
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=29.44 E-value=37 Score=14.00 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE--EEEEH
Q ss_conf 7508753377666445568078999999875421650--45300
Q gi|254780741|r 192 QIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ--IYLEP 233 (367)
Q Consensus 192 ~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~--l~iEP 233 (367)
.-+++.|||-=...........|.+.+.++.++.+.+ .|=|-
T Consensus 154 p~~~iHiGgDE~~~~~~~~~~~F~~~~~~~v~~~gk~~i~W~E~ 197 (329)
T cd06568 154 PGPYIHIGGDEAHSTPHDDYAYFVNRVRAIVAKYGKTPVGWQEI 197 (329)
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 99869977525576778999999999999999869967733265
No 116
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=29.05 E-value=28 Score=14.82 Aligned_cols=19 Identities=11% Similarity=0.043 Sum_probs=12.5
Q ss_pred EEECCCHHHHHHHHHHHCC
Q ss_conf 9856720599999986123
Q gi|254780741|r 96 IIFNTVSQLNKFKDKAQKL 114 (367)
Q Consensus 96 i~iDs~~El~~i~~~a~~~ 114 (367)
+.++|.+||..+.+.++..
T Consensus 35 ~~~~~~~~L~~~l~~~~~~ 53 (298)
T PRK13905 35 FEPADIEDLAAFLKFLKEN 53 (298)
T ss_pred EEECCHHHHHHHHHHHHHC
T ss_conf 9869999999999978876
No 117
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=28.67 E-value=39 Score=13.91 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6147899999999989865088750875337
Q gi|254780741|r 170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG 200 (367)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG 200 (367)
+.+..|...++...+.+.+...++..+.+||
T Consensus 201 Qef~aya~~l~~~~~rl~~~~~~l~~l~lGG 231 (471)
T PRK12273 201 QEFGAFAVALAEDIKRLEEAAELLREVNLGA 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 7899999999999999999999987536875
No 118
>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa
Probab=28.29 E-value=39 Score=13.87 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=19.3
Q ss_pred CCCCCCCEEEECCCC---CCCCCCCEEEEECCCC
Q ss_conf 333666455213566---7788798999968870
Q gi|254780741|r 295 RSCLAGDIFGEFHFE---KPVKIGDRISFEDVAG 325 (367)
Q Consensus 295 ~~C~~~D~l~~~~~~---~~l~~GD~l~i~~~GA 325 (367)
|+..++|++.-.... ..++.||.++|..-+-
T Consensus 12 Pt~~~Gd~v~v~~~~~~~~~~~~GDivv~~~p~~ 45 (85)
T cd06530 12 PTLQPGDLVLVNKLSYGFREPKRGDVVVFKSPGD 45 (85)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC
T ss_conf 6030898999996135657777786999967999
No 119
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.10 E-value=39 Score=13.85 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCC--CCCCCCHHHHHH---HHHHHHHCCCEEEEEH
Q ss_conf 998986508875087533776664--455680789999---9987542165045300
Q gi|254780741|r 182 IEKEFGHFITQIEWISLGGGIHFT--DKDYPVKDFCQR---LKEFSEKYSVQIYLEP 233 (367)
Q Consensus 182 ~~~~~~~~~~~l~~idiGGG~~~~--~~~~~~~~~~~~---i~~~~~~~~~~l~iEP 233 (367)
+.++..+++- ..+-++.|.+.. .++..++.+++. +.+..++.+++|.+||
T Consensus 95 ~id~A~~Lga--~~v~v~~~~~~~~~~~~~~w~~~~e~l~~l~~~A~~~Gv~l~lE~ 149 (276)
T PRK09856 95 AMDMAKEMNA--GYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP 149 (276)
T ss_pred HHHHHHHHCC--CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999998499--849993687778889799999999999999999997399899951
No 120
>KOG1344 consensus
Probab=27.93 E-value=40 Score=13.83 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=13.7
Q ss_pred EEECCCCCCCCCC--C---CCHHHHHHHHHHHHH
Q ss_conf 7533776664455--6---807899999987542
Q gi|254780741|r 196 ISLGGGIHFTDKD--Y---PVKDFCQRLKEFSEK 224 (367)
Q Consensus 196 idiGGG~~~~~~~--~---~~~~~~~~i~~~~~~ 224 (367)
||+||||+..... . +..++.-+|....++
T Consensus 135 INvGGGFHHcss~rGGGFC~yADItl~I~~lFer 168 (324)
T KOG1344 135 INVGGGFHHCSSSRGGGFCAYADITLAIFFLFER 168 (324)
T ss_pred EEECCCCCEECCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf 8406751010147898502314678999999865
No 121
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=27.67 E-value=40 Score=13.80 Aligned_cols=41 Identities=12% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 78861388---689856720599999986123456148996357
Q gi|254780741|r 86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV 126 (367)
Q Consensus 86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~ 126 (367)
++...+.| .++.+++.....++.+..++.+.++||=+||+.
T Consensus 79 i~~~~~~gad~I~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T 122 (224)
T PTZ00170 79 VDSFAKAGASQFTFHIEATEDPKAVARKIRAAGMQVGVALKPKT 122 (224)
T ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 99998628967998500133999999999971476455607999
No 122
>pfam02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase.
Probab=27.61 E-value=40 Score=13.79 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=11.6
Q ss_pred EEEEEEC-CCCEEEEEECCHHH
Q ss_conf 7999967-99099997389899
Q gi|254780741|r 341 TIAVKNV-DGTIKAIREFSYND 361 (367)
Q Consensus 341 ~~v~~~~-~g~~~~~r~e~~~d 361 (367)
++|-++. .|++++.|--...|
T Consensus 467 aeVeVD~~TG~v~v~~~~~v~D 488 (543)
T pfam02738 467 VEVEVDCLTGDVKVLRTDIVMD 488 (543)
T ss_pred EEEEEECCCCCEEEEEEEEEEE
T ss_conf 9999988999789849999990
No 123
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase; InterPro: IPR005961 This entry represents the large, tetrameric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in metazoans. PAH irreversibly converts phenylalanine to tyrosine, and is known to be the rate-limiting step in phenylalanine catabolism in some systems. It is closely related to metazoan tyrosine 3-monooxygenase and tryptophan 5-monoxygenase, and more distantly to monomeric phenylalanine-4-hydroxylases of some Gram-negative bacteria. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity . However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered. A deficiency in PAH can lead to phenylketonuria (PKU), an autosomal recessive genetic disorder characterised by an inability to metabolise phenylalanine, resulting in elevated Phe levels in the bloodstream that can lead to mental retardation if left untreated . More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=27.47 E-value=33 Score=14.35 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=5.6
Q ss_pred CEEEEEEECC
Q ss_conf 8699954105
Q gi|254780741|r 30 VKLLLALKCF 39 (367)
Q Consensus 30 ~~i~yA~KaN 39 (367)
..+.|+.|-.
T Consensus 19 ~~l~Fslk~~ 28 (445)
T TIGR01268 19 TSLIFSLKEE 28 (445)
T ss_pred EEEEEECCHH
T ss_conf 7899841400
No 124
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=27.34 E-value=41 Score=13.76 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=30.1
Q ss_pred HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 78861388---689856720599999986123456148996357
Q gi|254780741|r 86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV 126 (367)
Q Consensus 86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~ 126 (367)
++...+.| .++.+++..++.++....++.+.++||=+||+.
T Consensus 78 i~~~~~aGad~i~~H~Ea~~~~~~~i~~ik~~g~k~GlalnP~T 121 (223)
T PRK08745 78 VPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPAT 121 (223)
T ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 99999739978999606442999999999983984467746999
No 125
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=27.29 E-value=41 Score=13.76 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=24.4
Q ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 689856720599999986123456148996357
Q gi|254780741|r 94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSV 126 (367)
Q Consensus 94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~ 126 (367)
.++.+++...+.++.+..++.+.++||=+||+.
T Consensus 88 I~~H~Ea~~~~~~~i~~ik~~g~k~Glalnp~T 120 (220)
T PRK05581 88 ITFHVEASEHIHRLLQLIKEAGIKAGLVLNPAT 120 (220)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 998167502799999999974997046766999
No 126
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.23 E-value=27 Score=14.93 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=9.7
Q ss_pred HHHHHHHHCCCCCEEEEECCCC
Q ss_conf 9998986508875087533776
Q gi|254780741|r 181 NIEKEFGHFITQIEWISLGGGI 202 (367)
Q Consensus 181 ~~~~~~~~~~~~l~~idiGGG~ 202 (367)
.+.+.+..-++.+--=|+||-+
T Consensus 129 Fv~~yL~~EgI~ivA~DLGG~~ 150 (237)
T PRK13489 129 FVRRYLALERIRITAEDLQGVH 150 (237)
T ss_pred HHHHHHHHCCCCEEECCCCCCC
T ss_conf 9999999769927863038997
No 127
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=27.15 E-value=41 Score=13.74 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=7.8
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q ss_conf 6566614789999999998
Q gi|254780741|r 166 NCENKSFLCFSAMLKNIEK 184 (367)
Q Consensus 166 gs~~~~~~~~~~~l~~~~~ 184 (367)
|--.+..+.|.+.++.+.+
T Consensus 175 GlPgQt~~~~~~~l~~~~~ 193 (399)
T PRK07379 175 GLPHQTLEDWQASLEAAIA 193 (399)
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 7899889999999999973
No 128
>pfam03328 HpcH_HpaI HpcH/HpaI aldolase/citrate lyase family. This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Probab=26.97 E-value=41 Score=13.72 Aligned_cols=28 Identities=4% Similarity=-0.020 Sum_probs=14.2
Q ss_pred EEECCCCCHHHHHHHHCCC-CEEEECCCH
Q ss_conf 8853777803478861388-689856720
Q gi|254780741|r 75 HAYNVAYKDCEIDAVLSNC-DTIIFNTVS 102 (367)
Q Consensus 75 i~~~~~~~~~el~~a~~~~-~~i~iDs~~ 102 (367)
..|-|+.+++-++.+...+ ..+++|=++
T Consensus 3 ~LfvP~~~p~~~~ka~~~gaD~viiDLEd 31 (221)
T pfam03328 3 GLFLPGANPAMAEKAAIAGADWVVIDLEH 31 (221)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEEECCC
T ss_conf 77623899999999854898999998767
No 129
>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP). POT1 proteins recognize single-stranded (ss) 3-prime ends of the telomere. A 3-prime ss overhang is conserved in ciliated protozoa, yeast, and mammals. SpPOT1 is essential for telomere maintenance. It binds specifically to the ss G-rich telomeric sequence (GGTTAC) of S. pombe. hPOT1 binds specifically to ss telomeric DNA repeats ending with the sequence GGTTAG. Deletion of the S. pombe pot1+ gene results in a rapid loss of telomere sequences, chromosome mis-segregation and chromosome circularization. hPOT1 is implicated in telomere length regulation. The hPOT1 monomer consists of two closely connected OB folds (OB1-OB
Probab=26.93 E-value=41 Score=13.71 Aligned_cols=37 Identities=24% Similarity=0.114 Sum_probs=24.4
Q ss_pred EEEEECCCCCCCCEE-----EEC-CCCCCCCCCCEEEEECCCC
Q ss_conf 599862333666455-----213-5667788798999968870
Q gi|254780741|r 289 TAMVCGRSCLAGDIF-----GEF-HFEKPVKIGDRISFEDVAG 325 (367)
Q Consensus 289 ~~~v~G~~C~~~D~l-----~~~-~~~~~l~~GD~l~i~~~GA 325 (367)
+.+|.-++|.+.+.+ .++ ..+|.+++||++.++++--
T Consensus 40 tl~I~D~S~~~~~~l~v~~F~~~~~~LP~v~~GDiIll~~~~v 82 (138)
T cd04497 40 TLTITDPSLANSDGLTVKLFRPNEESLPIVKVGDIILLRRVKI 82 (138)
T ss_pred EEEEECCCCCCCCCEEEEEECCCHHHCCCCCCCCEEEEEEEEE
T ss_conf 9999928999999679999899865698999998999988899
No 130
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.74 E-value=42 Score=13.69 Aligned_cols=107 Identities=10% Similarity=-0.001 Sum_probs=47.3
Q ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEECCC
Q ss_conf 98885689779999999999999853369869995410599999999985187489807999989873688010885377
Q gi|254780741|r 1 MIKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYNVA 80 (367)
Q Consensus 1 ~i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~~~ 80 (367)
||.|-=+-++.+.|++-+..+... +..-++.+.. -..|.-+++-+.-||-... .+.+..+.-.|.
T Consensus 7 mlD~aR~f~~~~~ik~~id~ma~~-KlN~lH~Hlt-------------Ddq~wr~ei~~~P~Lt~~g-a~~~~~~~~~~~ 71 (357)
T cd06563 7 MLDVSRHFFPVDEVKRFIDLMALY-KLNVFHWHLT-------------DDQGWRIEIKKYPKLTEVG-AWRGPTEIGLPQ 71 (357)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEE-------------CCCCCEEEECCCCHHHHHC-CCCCCCCCCCCC
T ss_conf 664368775899999999999981-8947889775-------------4888612107862266643-516766566665
Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 78034788613886898567205999999861234561489963577443101
Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFIL 133 (367)
Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~ 133 (367)
.... ....+... |.+|+..|.+.|+. -+|||-|.+..++|..
T Consensus 72 ~~~~----~~~~~g~Y---T~~di~eiv~yA~~----rgI~VIPEID~PGH~~ 113 (357)
T cd06563 72 GGGD----GTPYGGFY---TQEEIREIVAYAAE----RGITVIPEIDMPGHAL 113 (357)
T ss_pred CCCC----CCCCCCCC---CHHHHHHHHHHHHH----CCCEEEECCCCCHHHH
T ss_conf 5678----87778874---99999999999997----6998976257611678
No 131
>pfam02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain. Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.
Probab=26.55 E-value=42 Score=13.67 Aligned_cols=12 Identities=25% Similarity=0.266 Sum_probs=4.7
Q ss_pred HHHCCCEEEEEH
Q ss_conf 542165045300
Q gi|254780741|r 222 SEKYSVQIYLEP 233 (367)
Q Consensus 222 ~~~~~~~l~iEP 233 (367)
.++++++|-.||
T Consensus 88 ~~~~gI~Le~Ev 99 (103)
T pfam02873 88 FEKFGIWLEPEV 99 (103)
T ss_pred HHHHCCCCEEEE
T ss_conf 998898125601
No 132
>PRK13515 carboxylate-amine ligase; Provisional
Probab=26.54 E-value=42 Score=13.67 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=55.9
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC----HHHHHHHH-----HCCCEEEEECCCCCCCCHHH
Q ss_conf 9999998612345614899635774431012455786435742----78888743-----14960665305656661478
Q gi|254780741|r 104 LNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEK----CKDKIESE-----IKNVNGLMFHNNCENKSFLC 174 (367)
Q Consensus 104 l~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~----~~~~~~~~-----~~~i~Gih~H~gs~~~~~~~ 174 (367)
|..+.......-.+.++|+-+ .++|+... +...-++ +.++.+.. ..-+.|.|+|+|... .+.
T Consensus 70 L~~~r~~l~~aA~~~g~~l~a---~GthP~~~----w~~~~~t~~~RY~~l~~~~~~~a~~~~i~G~HVHVgv~d--~e~ 140 (381)
T PRK13515 70 LGRLRQRLAELAAQFGLRIIA---AGTHPFAD----WRRQRPTPKERYAQLFEDLGGVARRSLICGMHVHVGVPD--SED 140 (381)
T ss_pred HHHHHHHHHHHHHHCCCEEEE---ECCCCCCC----CCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCC--HHH
T ss_conf 999999999999986988983---07898888----766878960789999999999998643242389836898--899
Q ss_pred HHHHHHHHHHHHHHC----CCCCEEEEECC--CC-----------CCC---CCCCCCHHHHHHHHHHHHHC---CC-EEE
Q ss_conf 999999999898650----88750875337--76-----------664---45568078999999875421---65-045
Q gi|254780741|r 175 FSAMLKNIEKEFGHF----ITQIEWISLGG--GI-----------HFT---DKDYPVKDFCQRLKEFSEKY---SV-QIY 230 (367)
Q Consensus 175 ~~~~l~~~~~~~~~~----~~~l~~idiGG--G~-----------~~~---~~~~~~~~~~~~i~~~~~~~---~~-~l~ 230 (367)
-..++..+...+..+ ..+. |.+ |- || |-. ..-.+.++|.+.+..+.+.- +. .+|
T Consensus 141 av~v~n~lr~~LP~LLALSAsSP-Fw~-G~DTG~aS~R~~~~~~~P~aG~P~~f~s~~~y~~~v~~l~~tG~i~d~~~i~ 218 (381)
T PRK13515 141 RMALMNQVLYFLPHLLALSTSSP-FWG-GRDTGLKSYRRAIFGELPRTGLPPLFPSWAEYQRYVALLVRTGCIDDDGKIW 218 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC-CCC-CCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 99999999988899999970893-104-7877644168768864888899977689999999999998659968788058
Q ss_pred --EEHHHHCCCCCEEEEEEEEEEECC
Q ss_conf --300220145741888788786304
Q gi|254780741|r 231 --LEPGEAIVTNTTTLNTTVLDISEN 254 (367)
Q Consensus 231 --iEPGR~lv~~ag~lv~~V~~~K~~ 254 (367)
+=| ....+++-.||-|+--+
T Consensus 219 WdvRP----s~~~pTlEvRv~D~~~~ 240 (381)
T PRK13515 219 WDLRP----SPRFPTLELRICDVCPR 240 (381)
T ss_pred EEECC----CCCCCCEEEECCCCCCC
T ss_conf 98257----89999625750688799
No 133
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=26.23 E-value=43 Score=13.63 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 6147899999999989865088750875337
Q gi|254780741|r 170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG 200 (367)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG 200 (367)
+.+..|...++.-.+.+.+...++..+++||
T Consensus 199 qef~~~a~~l~r~~~Rl~~~~~~l~~l~lGG 229 (473)
T PRK13353 199 QEFKAYSRVLERDMKRIQQSREHLYEVNLGA 229 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999999999988744787
No 134
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=26.22 E-value=43 Score=13.63 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=47.1
Q ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHH
Q ss_conf 68985672059999998612345614899635774431012455786435742788887431496066530565666147
Q gi|254780741|r 94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFL 173 (367)
Q Consensus 94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~ 173 (367)
.++.+++...+.++.+..+..+.++||=+||+.. .+. .+...+. ...+.-.....|.+-+.+.
T Consensus 84 i~~H~E~~~~~~~~i~~ik~~g~k~GlAlnP~T~------------~~~----l~~~l~~-iD~VLvMtV~PGf~GQ~f~ 146 (201)
T pfam00834 84 ISFHAEASDHPHRTIQLIKEAGAKAGLVLNPATP------------LDA----IEYLLDD-LDLVLLMSVNPGFGGQSFI 146 (201)
T ss_pred EEECHHHHHCHHHHHHHHHHCCCEEEEEECCCCC------------CHH----HHHHHHH-CCEEEEEEECCCCCCCCCC
T ss_conf 9975444137999999998649726888569986------------028----8876742-7989998866898876456
Q ss_pred -HHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf -89999999998986508875087533776
Q gi|254780741|r 174 -CFSAMLKNIEKEFGHFITQIEWISLGGGI 202 (367)
Q Consensus 174 -~~~~~l~~~~~~~~~~~~~l~~idiGGG~ 202 (367)
..-..++.+.+++.+.+.++ .|-+=||.
T Consensus 147 ~~~l~KI~~lr~~~~~~~~~~-~I~vDGGI 175 (201)
T pfam00834 147 PSVLPKIRKVRKMIDEGGLDT-LIEVDGGV 175 (201)
T ss_pred HHHHHHHHHHHHHHHHCCCCE-EEEEECCC
T ss_conf 779999999999998269980-79998988
No 135
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=25.84 E-value=10 Score=17.74 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCEEEEEHHHHCCCCCE
Q ss_conf 9999987542165045300220145741
Q gi|254780741|r 215 CQRLKEFSEKYSVQIYLEPGEAIVTNTT 242 (367)
Q Consensus 215 ~~~i~~~~~~~~~~l~iEPGR~lv~~ag 242 (367)
.-...++.-+..++++||.|-+=-|++-
T Consensus 21 l~~~qeii~~~kPd~IIE~G~a~GGS~l 48 (202)
T pfam04989 21 MVAYQELIWELKPDLIIETGIAHGGSAL 48 (202)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHH
T ss_conf 9999999998599989996167662899
No 136
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=25.57 E-value=43 Score=13.58 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=12.5
Q ss_pred EEECCCHHHHHHHHHHHCCC
Q ss_conf 98567205999999861234
Q gi|254780741|r 96 IIFNTVSQLNKFKDKAQKLH 115 (367)
Q Consensus 96 i~iDs~~El~~i~~~a~~~~ 115 (367)
+...+.+||..+.+.+++.+
T Consensus 41 ~~p~~~~~l~~~~~~~~~~~ 60 (307)
T PRK13906 41 ITPTKNEEVQAVVKYAYQNE 60 (307)
T ss_pred EEECCHHHHHHHHHHHHHCC
T ss_conf 96499999999999898769
No 137
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=25.21 E-value=35 Score=14.17 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH----------HHCCC-CCEEEEECCCCCCCCCCC--CCHHHHHHHHHHHHHCCCEEEEEHHHH
Q ss_conf 999999999898----------65088-750875337766644556--807899999987542165045300220
Q gi|254780741|r 175 FSAMLKNIEKEF----------GHFIT-QIEWISLGGGIHFTDKDY--PVKDFCQRLKEFSEKYSVQIYLEPGEA 236 (367)
Q Consensus 175 ~~~~l~~~~~~~----------~~~~~-~l~~idiGGG~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~iEPGR~ 236 (367)
|+..++.+.+.- ++-.+ +.+.|=||||+|--..+. ..+.+.+.|+++.+. +..+.-|+|=+
T Consensus 260 Y~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~-G~piyaECGGl 333 (451)
T COG1797 260 YPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAA-GKPIYAECGGL 333 (451)
T ss_pred CHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf 299999999779779985786777799778889968977488999984479999999999876-99458851551
No 138
>PRK05660 coproporphyrinogen III oxidase; Provisional
Probab=25.06 E-value=45 Score=13.49 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=27.4
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCCC
Q ss_conf 898650887508753377666445568078999999875421----6-5045300220145
Q gi|254780741|r 184 KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIVT 239 (367)
Q Consensus 184 ~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv~ 239 (367)
+.+.+.+.+-=-+|+==|+ |....+++.+.+..+.+-- . ..|.+|||..+..
T Consensus 150 ~~~r~~gf~~iniDLiyGl----P~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~ 206 (378)
T PRK05660 150 KLAQGAGLRSFNLDLMHGL----PDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGS 206 (378)
T ss_pred HHHHHCCCCEEEECCCCCC----CCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHH
T ss_conf 9999769960654232689----99889999999999864498805788888658973764
No 139
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=24.70 E-value=45 Score=13.45 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCC
Q ss_conf 5568078999999875421----6-504530022014
Q gi|254780741|r 207 KDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIV 238 (367)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv 238 (367)
++...+++.+.+.++.+-- . ..+.+|||..+.
T Consensus 182 P~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~ 218 (393)
T PRK08898 182 PNQTLDECRADVETALAFGPPHLSLYHLTLEPNTLFA 218 (393)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHH
T ss_conf 8898999999999986249995898777764897332
No 140
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=24.64 E-value=46 Score=13.44 Aligned_cols=85 Identities=13% Similarity=-0.000 Sum_probs=40.6
Q ss_pred CCEEEEEEECCC-CHHHHHHHHHH---CCEEEEECHHHH-H---HHHCCCCCCCEEECCCCCHHHHHHHHCCC--CEEEE
Q ss_conf 986999541059-99999999851---874898079999-8---98736880108853777803478861388--68985
Q gi|254780741|r 29 GVKLLLALKCFA-AWGMFDTLNQY---MDGTTSSSLYEV-M---LGHEKFGGETHAYNVAYKDCEIDAVLSNC--DTIIF 98 (367)
Q Consensus 29 ~~~i~yA~KaN~-~~~il~~l~~~---g~g~dv~S~~E~-~---la~~g~~~~~i~~~~~~~~~el~~a~~~~--~~i~i 98 (367)
+.++.=|+=.+- ...+++++++. +..+...|.... + .+++-.|.-.|+++|+...-.-+++++.. .-+++
T Consensus 46 ~~~~iDa~~~~~~~~~~~~~~~~~d~v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~T~~pee~L~~~~~iD~Vv 125 (472)
T TIGR03471 46 GSRLVDAPPHGVTIDDTLAIAKDYDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHVAVLPEKTLKQGPAIDFVC 125 (472)
T ss_pred CCCEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCCCEEEEE
T ss_conf 78375277668998999998506998999925865688999999999768898899978764368999984389726999
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 6720599999986123
Q gi|254780741|r 99 NTVSQLNKFKDKAQKL 114 (367)
Q Consensus 99 Ds~~El~~i~~~a~~~ 114 (367)
-.+-|.. +.+++++.
T Consensus 126 rGEgE~t-l~el~~g~ 140 (472)
T TIGR03471 126 RREFDYT-IKEVAEGK 140 (472)
T ss_pred ECCHHHH-HHHHHCCC
T ss_conf 2646999-99997499
No 141
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase; InterPro: IPR001160 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This majority of this group of proteins are aminoacyl-histidine dipeptidases (3.4.13.3 from EC, Xaa-His dipeptidases), which are zinc-containing metallopeptidases that belong to MEROPS peptidase family M20 (clan MH), subfamily M20C . Proteins of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His , . The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide.. The X-His dipeptidases cleave Xaa-His dipeptides (where Xaa is any hydrophobic residue). The amino acid sequence deduced from Escherichia coli reveals that peptidase D is a slightly hydrophilic protein of 485 residues that contains no extended domains of marked hydrophobicity . Also contained within this family of proteins are acetylornithine deactylases which belong to MEROPS peptidase family M20, subfamily M20A non-peptidase homologues. ; GO: 0008769 X-His dipeptidase activity, 0006508 proteolysis.
Probab=24.43 E-value=26 Score=15.10 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=15.7
Q ss_pred HHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 61388689856720599999986
Q gi|254780741|r 89 VLSNCDTIIFNTVSQLNKFKDKA 111 (367)
Q Consensus 89 a~~~~~~i~iDs~~El~~i~~~a 111 (367)
..++...||+||++|=..+.--|
T Consensus 157 ~~~G~~LiNiDsEeeG~~~vGCA 179 (506)
T TIGR01893 157 LLEGKILINIDSEEEGELLVGCA 179 (506)
T ss_pred CCCCCEEEECCCEEEEEEEEEEC
T ss_conf 00165012137533348999722
No 142
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=23.84 E-value=47 Score=13.34 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=34.9
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCEEEEECCC
Q ss_conf 665305656661478999999999898-650887508753377
Q gi|254780741|r 160 GLMFHNNCENKSFLCFSAMLKNIEKEF-GHFITQIEWISLGGG 201 (367)
Q Consensus 160 Gih~H~gs~~~~~~~~~~~l~~~~~~~-~~~~~~l~~idiGGG 201 (367)
-|-.|.|++=....-|+.||-.|..+. ++-|...+.||+--|
T Consensus 135 ~ltI~~GAGGTEa~DWa~ML~RMY~RWAE~rgykvE~lD~~~g 177 (373)
T TIGR00020 135 ILTIQSGAGGTEAQDWASMLYRMYLRWAERRGYKVEILDYSEG 177 (373)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 3352387798516669999987535764105751356312678
No 143
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=23.79 E-value=35 Score=14.23 Aligned_cols=20 Identities=15% Similarity=0.006 Sum_probs=11.6
Q ss_pred HHHHHHHHHCCCEEEEECCC
Q ss_conf 78888743149606653056
Q gi|254780741|r 147 CKDKIESEIKNVNGLMFHNN 166 (367)
Q Consensus 147 ~~~~~~~~~~~i~Gih~H~g 166 (367)
..++.+....++..-||-+.
T Consensus 114 i~elf~~~gIgv~a~nflV~ 133 (247)
T cd03275 114 YNEELEKINILVKARNFLVF 133 (247)
T ss_pred HHHHHHHCCCCCCCCCEEEE
T ss_conf 99998765999778723896
No 144
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=23.70 E-value=24 Score=15.28 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=24.6
Q ss_pred HCCCCCEEEEECCCCCCCCCCCC--CHHHHHHHHHHHHHCCCEEEEEHHHHC
Q ss_conf 50887508753377666445568--078999999875421650453002201
Q gi|254780741|r 188 HFITQIEWISLGGGIHFTDKDYP--VKDFCQRLKEFSEKYSVQIYLEPGEAI 237 (367)
Q Consensus 188 ~~~~~l~~idiGGG~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~iEPGR~l 237 (367)
+-.++++-|=||||||--+.+.- -..+ +.+++...+ +..++-|+|=++
T Consensus 269 ~~LP~~dglylgGGyPEl~a~~Ls~n~~l-~si~~~a~~-G~PiyAECGGlM 318 (432)
T PRK13896 269 DPLPDCDGVYLPGGYPELHGEALADGPAL-DELGARAAD-GLPVLGECGGLM 318 (432)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHCCHHH-HHHHHHHHC-CCCEEEECCCHH
T ss_conf 98998898984799803789998608789-999999986-997899873089
No 145
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=23.66 E-value=47 Score=13.32 Aligned_cols=91 Identities=12% Similarity=0.218 Sum_probs=47.9
Q ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCHH
Q ss_conf 68985672059999998612345614899635774431012455786435742788887431496066530565666147
Q gi|254780741|r 94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFL 173 (367)
Q Consensus 94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gih~H~gs~~~~~~ 173 (367)
.++.+++..++.++.+..++.+.++||=+||+.. .+. .+.... ....+.-.....|.+-+.+.
T Consensus 85 I~~H~Ea~~~~~~~i~~Ik~~g~k~GlalnP~T~------------~~~----l~~~l~-~~D~VLvMtV~PGf~GQ~f~ 147 (220)
T PRK08883 85 ITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATP------------LAH----LEYIMD-KVDLILLMSVNPGFGGQSFI 147 (220)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCC------------HHH----HHHHHH-HCCEEEEEEECCCCCCCCCC
T ss_conf 9985776549999999999859966888479998------------799----999997-46979998745898875455
Q ss_pred -HHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf -89999999998986508875087533776
Q gi|254780741|r 174 -CFSAMLKNIEKEFGHFITQIEWISLGGGI 202 (367)
Q Consensus 174 -~~~~~l~~~~~~~~~~~~~l~~idiGGG~ 202 (367)
.--..+..+.+.+.+.+.+++ |-+=||+
T Consensus 148 ~~~l~Ki~~l~~~~~~~~~~~~-I~VDGGI 176 (220)
T PRK08883 148 PHTLDKLRAVRKMIDASGRDIR-LEIDGGV 176 (220)
T ss_pred HHHHHHHHHHHHHHHHCCCCCE-EEEECCC
T ss_conf 7799999999998874499807-9998987
No 146
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HUPF/HYPC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process . They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation , . .
Probab=23.60 E-value=46 Score=13.39 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=15.4
Q ss_pred EEEECCCCCCCCEEEECCCCCCCCCCCEEEEEC
Q ss_conf 998623336664552135667788798999968
Q gi|254780741|r 290 AMVCGRSCLAGDIFGEFHFEKPVKIGDRISFED 322 (367)
Q Consensus 290 ~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~ 322 (367)
-.+.|.+|+. .+++++||||.+|-
T Consensus 32 l~Lv~ksC~~---------N~~~~~GdyvLvH~ 55 (88)
T TIGR00074 32 LDLVGKSCDE---------NEEVKVGDYVLVHV 55 (88)
T ss_pred EEECCCCCCC---------CCCCCCCCEEEEEE
T ss_conf 4123554467---------85999987763200
No 147
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=23.39 E-value=48 Score=13.29 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.6
Q ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 68985672059999998612345614899635
Q gi|254780741|r 94 DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPS 125 (367)
Q Consensus 94 ~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~ 125 (367)
.++.+++...+.++.+..+..+.++||=+||+
T Consensus 84 I~~H~E~~~~~~~~i~~ik~~g~~~Glal~p~ 115 (211)
T cd00429 84 ITFHAEATDHLHRTIQLIKELGMKAGVALNPG 115 (211)
T ss_pred EEECCCCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99864322089999999997398723575489
No 148
>pfam08902 DUF1848 Domain of unknown function (DUF1848). This family of proteins are functionally uncharacterized. The C-terminus contains a cluster of cysteines that are similar to the iron-sulfur cluster found at the N-terminus of pfam04055.
Probab=23.22 E-value=39 Score=13.85 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=15.5
Q ss_pred HHHHHHHHHCCCC-CCEEEEEECC
Q ss_conf 9999998612345-6148996357
Q gi|254780741|r 104 LNKFKDKAQKLHK-KIGLRINPSV 126 (367)
Q Consensus 104 l~~i~~~a~~~~~-~I~lRinP~~ 126 (367)
++.+.++++..|+ +|..|..|=+
T Consensus 99 i~~f~~Ls~~iG~~rViWRYDPIi 122 (264)
T pfam08902 99 IETFRRLSEKIGPERVIWRYDPII 122 (264)
T ss_pred HHHHHHHHHHHCCCCEEEECCCEE
T ss_conf 999999999879880898369777
No 149
>PRK10115 protease 2; Provisional
Probab=23.09 E-value=41 Score=13.73 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=31.0
Q ss_pred CEEEEECCCCHHHHHCCCCCCCCCC--------EEEEEECCCCE---------EEEEECCHHHHHH
Q ss_conf 8999968870223243476899887--------79999679909---------9997389899987
Q gi|254780741|r 316 DRISFEDVAGYNINRKNWFNGINMP--------TIAVKNVDGTI---------KAIREFSYNDYYN 364 (367)
Q Consensus 316 D~l~i~~~GAY~~~~~~~Fn~~~~P--------~~v~~~~~g~~---------~~~r~e~~~d~~~ 364 (367)
--+.+.-=|||++++.+.|..-.++ ++.-+++.|+. ...|+-||+||++
T Consensus 445 ~P~lLyGYG~ygis~~p~Fs~~~l~ll~rG~v~AiahvRGGgE~G~~Wh~~G~~~~K~n~f~Dfia 510 (686)
T PRK10115 445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLD 510 (686)
T ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHH
T ss_conf 877999976466632786266575686589789999615788774478986656459647799999
No 150
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=22.96 E-value=49 Score=13.23 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEEECC---CCCCC
Q ss_conf 6147899999999989865088750875337---76664
Q gi|254780741|r 170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGG---GIHFT 205 (367)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~l~~idiGG---G~~~~ 205 (367)
+.+.+|+.+++.=...+.+....+..+|+|| |-+++
T Consensus 200 qEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTGiN 238 (471)
T COG1027 200 QEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTGIN 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 467999999999999999999888850578501146768
No 151
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.92 E-value=49 Score=13.23 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=10.1
Q ss_pred CCCCEEEEEEEEEEECCCC
Q ss_conf 4574188878878630443
Q gi|254780741|r 238 VTNTTTLNTTVLDISENIK 256 (367)
Q Consensus 238 v~~ag~lv~~V~~~K~~~~ 256 (367)
....|.-+-||-|+|++.+
T Consensus 246 a~~~Ga~ilRVHDV~e~~~ 264 (282)
T PRK11613 246 AAMQGAQIIRVHDVKETVE 264 (282)
T ss_pred HHHCCCCEEEECCHHHHHH
T ss_conf 9987999999589899999
No 152
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=22.86 E-value=49 Score=13.22 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEE
Q ss_conf 807899999987542165045
Q gi|254780741|r 210 PVKDFCQRLKEFSEKYSVQIY 230 (367)
Q Consensus 210 ~~~~~~~~i~~~~~~~~~~l~ 230 (367)
.+.++..++.++.++++...+
T Consensus 145 ~~~dI~~ai~~~~~~~g~~~v 165 (228)
T cd01089 145 QNSDITEAIQKVIVDYGCTPV 165 (228)
T ss_pred CHHHHHHHHHHHHHHCCCEEE
T ss_conf 968999999999998499677
No 153
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=22.73 E-value=49 Score=13.20 Aligned_cols=66 Identities=23% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCCCC-CC--C-HHHHHHHHHHHHHCCCEEEE-EHHHHCCCCCEEEEEE
Q ss_conf 99998986508875087533776664455-68--0-78999999875421650453-0022014574188878
Q gi|254780741|r 180 KNIEKEFGHFITQIEWISLGGGIHFTDKD-YP--V-KDFCQRLKEFSEKYSVQIYL-EPGEAIVTNTTTLNTT 247 (367)
Q Consensus 180 ~~~~~~~~~~~~~l~~idiGGG~~~~~~~-~~--~-~~~~~~i~~~~~~~~~~l~i-EPGR~lv~~ag~lv~~ 247 (367)
..+.++..+++.+ ...-+ ||+++..-- .+ + ..-...+.+..+++++..-- |||-.||+.+|.+|.=
T Consensus 106 ~~~Ld~a~e~g~~-~IyTL-GGy~vGkl~eep~VlGA~ts~eLi~~lke~gV~fr~~epgGgIVGasGLllg~ 176 (258)
T COG2047 106 GKILDIAKEFGAR-MIYTL-GGYGVGKLVEEPRVLGAVTSKELIEELKEHGVEFRSGEPGGGIVGASGLLLGF 176 (258)
T ss_pred HHHHHHHHHCCCC-EEEEE-CCCCCCCCCCCCEEEEEECCHHHHHHHHHCCEEECCCCCCCCEECHHHHHHHH
T ss_conf 9999999972974-79970-68556843577637774088999999997295713589987443024666445
No 154
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=22.47 E-value=38 Score=13.98 Aligned_cols=190 Identities=16% Similarity=0.174 Sum_probs=89.1
Q ss_pred CEEEEECHHH----HHHHHCCC-CCCCEEECCCCCHH-HHHHHHCCCCEEEE--CCCHHHHHHHH-HHHCCCCCCEEEEE
Q ss_conf 7489807999----98987368-80108853777803-47886138868985--67205999999-86123456148996
Q gi|254780741|r 53 DGTTSSSLYE----VMLGHEKF-GGETHAYNVAYKDC-EIDAVLSNCDTIIF--NTVSQLNKFKD-KAQKLHKKIGLRIN 123 (367)
Q Consensus 53 ~g~dv~S~~E----~~la~~g~-~~~~i~~~~~~~~~-el~~a~~~~~~i~i--Ds~~El~~i~~-~a~~~~~~I~lRin 123 (367)
.|+=++|.+= +-++.+-. -+..|| -|.-+++ -..+....|+.+++ ||++|-..... ++++. |+=--
T Consensus 68 ~GVIaASAGNHAQGVAlsa~~LG~~A~IV-MP~tTP~IKV~AVk~~GgeVvLhG~~y~~A~~~A~eL~q~~----GlTfi 142 (508)
T TIGR01124 68 RGVIAASAGNHAQGVALSAEKLGLKAVIV-MPETTPDIKVDAVKAFGGEVVLHGDNYDDAKDHAIELAQEK----GLTFI 142 (508)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCCEEEE-CCCCCCCCCHHHEECCCCEEEEECCCHHHHHHHHHHHHHHC----CCEEE
T ss_conf 82012024545789987663179726987-88888220012031269879973798579999999999736----88652
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCH------------------------HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 357744310124557864357427------------------------88887431496066530565666147899999
Q gi|254780741|r 124 PSVSYSKFILADPNRPFSRLGEKC------------------------KDKIESEIKNVNGLMFHNNCENKSFLCFSAML 179 (367)
Q Consensus 124 P~~~~~~~~~~~~~~~~skfG~~~------------------------~~~~~~~~~~i~Gih~H~gs~~~~~~~~~~~l 179 (367)
|-+.+ +..=.|+ . =.|+.. .-+++.....|+=|. -+..|..++++.|
T Consensus 143 ~PFDd---PlVIAGQ-G-T~alEil~Q~~~~~davFVpvGGGGLiAGVA~~~K~l~P~IkvIG----VEp~DS~am~~sL 213 (508)
T TIGR01124 143 HPFDD---PLVIAGQ-G-TVALEILRQVAEDLDAVFVPVGGGGLIAGVAALVKQLMPEIKVIG----VEPTDSDAMKQSL 213 (508)
T ss_pred CCCCC---CCEECCC-H-HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE----ECCCHHHHHHHHH
T ss_conf 78888---6403251-0-666876505768476888711773689999999972289618997----4786599999998
Q ss_pred HHHHHHHHHCCCCCEEEEE-CCCCCCC------------CCC----CCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCE
Q ss_conf 9999898650887508753-3776664------------455----6807899999987542165045300220145741
Q gi|254780741|r 180 KNIEKEFGHFITQIEWISL-GGGIHFT------------DKD----YPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTT 242 (367)
Q Consensus 180 ~~~~~~~~~~~~~l~~idi-GGG~~~~------------~~~----~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag 242 (367)
+.=.. .+|+.+=| -=|..+. |=| -|.|+.|.++|+..+ |+|=++||-=+|. =||
T Consensus 214 ~AG~~------V~L~~VGlFaDGVAVk~vG~~TF~LC~~YvDd~v~VdtD~vCaAiKD~F~--dtRav~EPaGALa-lAG 284 (508)
T TIGR01124 214 EAGER------VDLDQVGLFADGVAVKEVGDETFRLCQQYVDDIVRVDTDEVCAAIKDLFE--DTRAVLEPAGALA-LAG 284 (508)
T ss_pred HCCCC------CCCCCCCEEECCEEEHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH--CHHHHCCHHHHHH-HHH
T ss_conf 56881------13771103426735400434458999974455486264455445553322--2122105026789-999
Q ss_pred EEEEEEEEEEC---CCCCCCCCCCCCCCCC
Q ss_conf 88878878630---4433343333565656
Q gi|254780741|r 243 TLNTTVLDISE---NIKNLVIVDSSVEAHV 269 (367)
Q Consensus 243 ~lv~~V~~~K~---~~~~~v~vd~g~~~~~ 269 (367)
. =.++++ .+++.+.+..|.|.|.
T Consensus 285 L----K~Yva~~g~~~~~Lvai~sGAN~NF 310 (508)
T TIGR01124 285 L----KKYVAKHGIEGQTLVAITSGANMNF 310 (508)
T ss_pred H----HHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 9----9999954899864688713675453
No 155
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.34 E-value=38 Score=13.95 Aligned_cols=26 Identities=8% Similarity=-0.266 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99999998986508875087533776
Q gi|254780741|r 177 AMLKNIEKEFGHFITQIEWISLGGGI 202 (367)
Q Consensus 177 ~~l~~~~~~~~~~~~~l~~idiGGG~ 202 (367)
+=++.+.+.+++.++.+.-=|+||-.
T Consensus 127 rNiefa~~~L~~egI~IvaeDlGG~~ 152 (201)
T PRK13487 127 RNAEFVRDYLQTERIPIIAEDLLDIY 152 (201)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999999999869937986659997
No 156
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=21.86 E-value=51 Score=13.09 Aligned_cols=45 Identities=11% Similarity=-0.025 Sum_probs=26.4
Q ss_pred CCEEECCCCCHHHHHHHHCCCCEEEECCC--HH------HHHHHHHHHCCCCC
Q ss_conf 10885377780347886138868985672--05------99999986123456
Q gi|254780741|r 73 ETHAYNVAYKDCEIDAVLSNCDTIIFNTV--SQ------LNKFKDKAQKLHKK 117 (367)
Q Consensus 73 ~~i~~~~~~~~~el~~a~~~~~~i~iDs~--~E------l~~i~~~a~~~~~~ 117 (367)
+.+..+|..+++++..+.+.|..-+|++- .| .+.+.+.++..+-+
T Consensus 7 ~~~~vs~Qi~~~di~~la~~GfktIInnRPd~E~~~qp~~~~~~~~a~~~Gl~ 59 (110)
T pfam04273 7 EDLSVSPQIQPDDIAAAARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLA 59 (110)
T ss_pred CCEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 88757599899999999985983885338887778998889999999983997
No 157
>pfam00728 Glyco_hydro_20 Glycosyl hydrolase family 20, catalytic domain. This domain has a TIM barrel fold.
Probab=21.85 E-value=51 Score=13.09 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=14.0
Q ss_pred CCCCCEEEEEHHHHHHHHHHHHH
Q ss_conf 98885689779999999999999
Q gi|254780741|r 1 MIKTPYYLIDKQKLLNNLDTALY 23 (367)
Q Consensus 1 ~i~TP~yv~d~~~i~~n~~~~~~ 23 (367)
||.|=-..++.+.|++-+..+..
T Consensus 7 mlD~aR~~~~~~~lk~~id~ma~ 29 (335)
T pfam00728 7 MLDVARHFFSVDTIKRLIDAMAF 29 (335)
T ss_pred EEECCCCCCCHHHHHHHHHHHHH
T ss_conf 67657887899999999999998
No 158
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.77 E-value=32 Score=14.47 Aligned_cols=26 Identities=12% Similarity=-0.095 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 99999989865088750875337766
Q gi|254780741|r 178 MLKNIEKEFGHFITQIEWISLGGGIH 203 (367)
Q Consensus 178 ~l~~~~~~~~~~~~~l~~idiGGG~~ 203 (367)
=++.+.+.+++-++.+--=|+||-.+
T Consensus 140 N~~Fa~~~L~~egI~vva~DlGG~~~ 165 (214)
T PRK13493 140 NVEFVLHYAEQEGLEVVAYDLGGLEP 165 (214)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 99999999998699279720599977
No 159
>PRK08807 consensus
Probab=21.53 E-value=52 Score=13.05 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHHHHC----C-CEEEEEHHHHCCC
Q ss_conf 5568078999999875421----6-5045300220145
Q gi|254780741|r 207 KDYPVKDFCQRLKEFSEKY----S-VQIYLEPGEAIVT 239 (367)
Q Consensus 207 ~~~~~~~~~~~i~~~~~~~----~-~~l~iEPGR~lv~ 239 (367)
+....+++.+.++.+.+-- - ..|.+|||..+..
T Consensus 171 P~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~ 208 (385)
T PRK08807 171 PEQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFA 208 (385)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHH
T ss_conf 99989999999999855599847898888517835754
No 160
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=21.48 E-value=52 Score=13.04 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=12.2
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q ss_conf 56566614789999999998
Q gi|254780741|r 165 NNCENKSFLCFSAMLKNIEK 184 (367)
Q Consensus 165 ~gs~~~~~~~~~~~l~~~~~ 184 (367)
.|--.+..+.|.+-|+.+.+
T Consensus 217 yGlPgQT~e~~~~dl~~~~~ 236 (447)
T PRK09058 217 FGLPGQTPEIWQQDLAIVRD 236 (447)
T ss_pred CCCCCCCHHHHHHHHHHHHC
T ss_conf 27988999999999999964
No 161
>KOG2263 consensus
Probab=21.31 E-value=53 Score=13.02 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH-----CCCEE----EEE-EECCCCHHHHHHHH-HHCCEEEEECHHH-HHHHHCC
Q ss_conf 88856897799999999999998533-----69869----995-41059999999998-5187489807999-9898736
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN-----AGVKL----LLA-LKCFAAWGMFDTLN-QYMDGTTSSSLYE-VMLGHEK 69 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~-----~~~~i----~yA-~KaN~~~~il~~l~-~~g~g~dv~S~~E-~~la~~g 69 (367)
|.-|.+|+|.+.=. .++++.+... .+.++ +|+ +-+|. ...++-|. -.+.|+|.+-.-| +.++.++
T Consensus 206 iDEPilvmDL~~~~--l~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a-~~~lk~L~~v~~~~~D~VR~~e~lD~~~a~ 282 (765)
T KOG2263 206 IDEPILVMDLPGEK--LQAFKGAYAELESTLSGLNVLLATYFADVPAEA-YKTLKSLKGVTAFGFDLVRGPETLDLVKAG 282 (765)
T ss_pred CCCCEEEEECCHHH--HHHHHHHHHHHHHHCCCCCEEEEHHHCCCCHHH-HHHHHCCCCEEEEEEEEEECHHHHHHHHHC
T ss_conf 27835886085789--999999999987532653246100322478778-998737864014423564165567799860
Q ss_pred CCCCCEEECCCCCH
Q ss_conf 88010885377780
Q gi|254780741|r 70 FGGETHAYNVAYKD 83 (367)
Q Consensus 70 ~~~~~i~~~~~~~~ 83 (367)
|+..++++-+...-
T Consensus 283 ~~~~k~l~~GvVdG 296 (765)
T KOG2263 283 FPEGKYLFAGVVDG 296 (765)
T ss_pred CCCCCEEEEEEECC
T ss_conf 88884699987446
No 162
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=21.31 E-value=53 Score=13.02 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=34.0
Q ss_pred CCCCCCEEEEECCCCHHHHHCCCCCCCCC--------CEEEEEECCCCE---------EEEEECCHHHHHH
Q ss_conf 78879899996887022324347689988--------779999679909---------9997389899987
Q gi|254780741|r 311 PVKIGDRISFEDVAGYNINRKNWFNGINM--------PTIAVKNVDGTI---------KAIREFSYNDYYN 364 (367)
Q Consensus 311 ~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~--------P~~v~~~~~g~~---------~~~r~e~~~d~~~ 364 (367)
++..---++..-=|||+.+|.+.|+...+ =+++-+++.|+. .+.|+-||.||+.
T Consensus 443 ~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa 513 (682)
T COG1770 443 KLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIA 513 (682)
T ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 67899857999953456557866441242200172699999950664347578873445533364788999
No 163
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=21.19 E-value=53 Score=13.00 Aligned_cols=100 Identities=13% Similarity=0.207 Sum_probs=61.5
Q ss_pred HHHHHCCC---CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE-EE
Q ss_conf 78861388---689856720599999986123456148996357744310124557864357427888874314960-66
Q gi|254780741|r 86 IDAVLSNC---DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVN-GL 161 (367)
Q Consensus 86 l~~a~~~~---~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~-Gi 161 (367)
++...+.| .++++++-..+.++.+.-|+.|.+=|+=+||..+ -+ . .+.+++. .++. --
T Consensus 74 ~~~Fa~aGA~~I~vH~Ea~~h~~R~l~~Ik~~G~~AG~v~NP~TP------------l~---~-~~~~L~~--~D~VLlM 135 (216)
T TIGR01163 74 IEDFAEAGADIITVHAEATEHIHRLLQLIKELGAKAGIVLNPATP------------LE---A-LEYVLED--VDLVLLM 135 (216)
T ss_pred HHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCC------------HH---H-HHHHHHH--CCEEEEE
T ss_conf 889997089989984377626799999999718970688679999------------87---8-9989876--2989988
Q ss_pred EECCC-CCCCCHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCC
Q ss_conf 53056-566614789999999998986508875-0875337766
Q gi|254780741|r 162 MFHNN-CENKSFLCFSAMLKNIEKEFGHFITQI-EWISLGGGIH 203 (367)
Q Consensus 162 h~H~g-s~~~~~~~~~~~l~~~~~~~~~~~~~l-~~idiGGG~~ 203 (367)
++--| |+++=.+..-+-++.+.+.+.++.... -.|.+=||.-
T Consensus 136 SVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDGGv~ 179 (216)
T TIGR01163 136 SVNPGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDGGVN 179 (216)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 76079988411057899999999999860279955899717989
No 164
>TIGR00700 GABAtrnsam 4-aminobutyrate transaminase; InterPro: IPR004632 Eukaryotic 4-aminobutyrate aminotransferase (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between, in either set, the most similar enzyme with a distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. Escherichia coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=20.96 E-value=54 Score=12.97 Aligned_cols=12 Identities=0% Similarity=0.091 Sum_probs=5.0
Q ss_pred CCCHHHHHHHHH
Q ss_conf 599999999985
Q gi|254780741|r 39 FAAWGMFDTLNQ 50 (367)
Q Consensus 39 N~~~~il~~l~~ 50 (367)
|++|.|++.+++
T Consensus 49 hshP~vV~AV~~ 60 (427)
T TIGR00700 49 HSHPKVVEAVKR 60 (427)
T ss_pred CCCHHHHHHHHH
T ss_conf 987358999999
No 165
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=20.82 E-value=54 Score=12.95 Aligned_cols=50 Identities=16% Similarity=0.073 Sum_probs=25.5
Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCC-----CEEEEEHHHHC
Q ss_conf 8986508875087533776664455680789999998754216-----50453002201
Q gi|254780741|r 184 KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYS-----VQIYLEPGEAI 237 (367)
Q Consensus 184 ~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~-----~~l~iEPGR~l 237 (367)
+.+.+.+.+---+|+==|+| ....+.+.+.+.++.+--. ..|.+|||..+
T Consensus 190 ~~~r~~gf~niniDLIyGlP----gQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l 244 (436)
T PRK08208 190 ELIRAAHFPSLNIDLIYGIP----GQTHASFMESLHQALVYRPEELFLYPLYVRPLTGL 244 (436)
T ss_pred HHHHHCCCCEEEEEEEECCC----CCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCC
T ss_conf 99998199857552443699----99999999999999827989898763304789830
No 166
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.80 E-value=54 Score=12.95 Aligned_cols=13 Identities=15% Similarity=0.496 Sum_probs=7.0
Q ss_pred HHHHCCCEEEEEH
Q ss_conf 7542165045300
Q gi|254780741|r 221 FSEKYSVQIYLEP 233 (367)
Q Consensus 221 ~~~~~~~~l~iEP 233 (367)
..++++++|.+||
T Consensus 131 ~a~~~Gv~l~iEp 143 (254)
T TIGR03234 131 ALDRIGLTLLIEP 143 (254)
T ss_pred HHHHCCCEEEEEE
T ss_conf 9996598898863
No 167
>TIGR01588 citE citrate lyase, beta subunit; InterPro: IPR006475 This group of sequences represent the beta subunit of the holoenzyme citrate lyase (4.1.3.6 from EC) composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The group contains an experimentally characterised member from Leuconostoc mesenteroides . The group contains sequences from a wide range of Gram-positive bacteria. For Gram-negative bacteria, it appears that only the sequences from gamma proteobacteria are present.; GO: 0008816 citryl-CoA lyase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=20.80 E-value=54 Score=12.95 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHC------CEEEEECHHH---H----HHHHCC--C-CCCCEEE-CCCCCH---HHHHHHHCCCCEEE---
Q ss_conf 999999998518------7489807999---9----898736--8-8010885-377780---34788613886898---
Q gi|254780741|r 41 AWGMFDTLNQYM------DGTTSSSLYE---V----MLGHEK--F-GGETHAY-NVAYKD---CEIDAVLSNCDTII--- 97 (367)
Q Consensus 41 ~~~il~~l~~~g------~g~dv~S~~E---~----~la~~g--~-~~~~i~~-~~~~~~---~el~~a~~~~~~i~--- 97 (367)
+|++++.-.-+| |==|+.|+.| + .-|++. | +.+..|= ||--++ +||++.++-|.-++
T Consensus 13 npAMi~da~iYGADSvMfDLEDAvS~~eKDsAR~LVy~AL~~~dY~~~EtVVRvN~LdtpFG~~Dl~AvVkAgvdvvRLP 92 (288)
T TIGR01588 13 NPAMIKDAFIYGADSVMFDLEDAVSLAEKDSARFLVYEALQTVDYGDTETVVRVNGLDTPFGLEDLKAVVKAGVDVVRLP 92 (288)
T ss_pred CHHHHCCCCEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEECC
T ss_conf 86444236022673000000125505433458889999853788775016887768998545888998875388656668
Q ss_pred -ECCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf -5672059999998612345614899
Q gi|254780741|r 98 -FNTVSQLNKFKDKAQKLHKKIGLRI 122 (367)
Q Consensus 98 -iDs~~El~~i~~~a~~~~~~I~lRi 122 (367)
.||.+++..+..+..+.-+++|.-|
T Consensus 93 Ktdt~~~i~~le~~i~~iE~E~Gr~v 118 (288)
T TIGR01588 93 KTDTAEDIHELEKLIEEIEKEIGREV 118 (288)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 98998899999989999998608885
No 168
>PRK09989 hypothetical protein; Provisional
Probab=20.12 E-value=56 Score=12.86 Aligned_cols=10 Identities=10% Similarity=0.105 Sum_probs=3.7
Q ss_pred CCEEEEECCC
Q ss_conf 9606653056
Q gi|254780741|r 157 NVNGLMFHNN 166 (367)
Q Consensus 157 ~i~Gih~H~g 166 (367)
+...+|++.|
T Consensus 98 gc~~vhv~aG 107 (258)
T PRK09989 98 NCEQVHVMAG 107 (258)
T ss_pred CCCEEEECCC
T ss_conf 9986887789
Done!