HHsearch results for GI: 254780741 and protein with PDBid: 1bd0_A
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=99.43 E-value=8.5e-10 Score=82.71 Aligned_cols=304 Identities=12% Similarity=0.129 Sum_probs=175.2
Q ss_pred CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEE
Q ss_conf 568-97799999999999998533698699954105----9999999998518-748980799998987-3688010885
Q gi|254780741|r 5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAY 77 (367)
Q Consensus 5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~ 77 (367)
|.| =.|.+.|+.|++.+++... ++.+++--+||| -...|.+.+.+.| ++|-|+++.|+...+ .|......++
T Consensus 7 ~tw~eIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~ILvl 85 (388)
T 1bd0_A 7 DTWAEVDLDAIYDNVENLRRLLP-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVL 85 (388)
T ss_dssp SEEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEEC
T ss_pred CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf 78999969999999999997489-98979999915026488899999999869899998679999999970899858996
Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH---
Q ss_conf 377780347886138868985672059999998612345--614899635774431012455786435742788887---
Q gi|254780741|r 78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE--- 152 (367)
Q Consensus 78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~--- 152 (367)
++.. ++++..+.+....+++.+.+.+..+...++ .+. +|-|-| +|| .+|+|+...+..+
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~vhLki------------DTG--M~RlG~~~~e~~~~~~ 149 (388)
T 1bd0_A 86 GASR-PADAALAAQQRIALTVFRSDWLEEASALYS-GPFPIHFHLKM------------DTG--MGRLGVKDEEETKRIV 149 (388)
T ss_dssp SCCC-GGGHHHHHHTTEEEEECCHHHHHHHHHHCC-CSSCEEEEEEB------------CSS--SCSSSBCSHHHHHHHH
T ss_pred CCCC-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEEEE------------ECC--CCCCCCCCHHHHHHHH
T ss_conf 1788-689999873266642062999998888761-58863899998------------168--8867878278999999
Q ss_pred -H----HHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf -4----3149606653056566-6147899999999989865088750875337766---64455680789999998754
Q gi|254780741|r 153 -S----EIKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQRLKEFSE 223 (367)
Q Consensus 153 -~----~~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~ 223 (367)
. ....+.|+..|..+-. .+.+...+.+....+...+.+.....+-++..-. .+...++
T Consensus 150 ~~i~~~~~l~~~Gi~tH~a~ad~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~anS~~~l~~~~~~~d------------- 216 (388)
T 1bd0_A 150 ALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFN------------- 216 (388)
T ss_dssp HHHHHSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTT-------------
T ss_pred HHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCC-------------
T ss_conf 9998589961678970246732235288999999999999975324540666256777539502376-------------
Q ss_pred HCCCEEEEEHHHHC----------------CCCCEEEEEEEEEEEC-------C-CCCC--------CCCCCCCCCCCCC
Q ss_conf 21650453002201----------------4574188878878630-------4-4333--------4333356565664
Q gi|254780741|r 224 KYSVQIYLEPGEAI----------------VTNTTTLNTTVLDISE-------N-IKNL--------VIVDSSVEAHVPD 271 (367)
Q Consensus 224 ~~~~~l~iEPGR~l----------------v~~ag~lv~~V~~~K~-------~-~~~~--------v~vd~g~~~~~~~ 271 (367)
++=||..+ .-++..+.++|+.+|+ + +..| +++..|..+-++-
T Consensus 217 ------~vR~Gi~lyG~~p~~~~~~~~~~~Lkpv~~l~a~ii~i~~~~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r 290 (388)
T 1bd0_A 217 ------MVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLR 290 (388)
T ss_dssp ------EEEECGGGGTCCSCGGGGGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCG
T ss_pred ------CEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
T ss_conf ------04133688843777665544445750579999973367775799845557520157783599982140256320
Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCC------HHHHHC---------CCCCC
Q ss_conf 001345530002478645998623336664552135667788798999968870------223243---------47689
Q gi|254780741|r 272 YLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAG------YNINRK---------NWFNG 336 (367)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GA------Y~~~~~---------~~Fn~ 336 (367)
.+.. -.+.. ....+.|.|..|+ |.+.-+... ++++||.+.+....+ -.++.. +.. +
T Consensus 291 ~~~~--~~V~i---~g~~~pivGrvsM--D~~~vDv~~-~~~vGD~V~l~G~~~~~~i~~~~~a~~~~ti~yEil~~l-~ 361 (388)
T 1bd0_A 291 RLQH--FHVLV---DGQKAPIVGRICM--DQCMIRLPG-PLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTI-S 361 (388)
T ss_dssp GGGG--CEEEE---TTEEEEEESCCCS--SCEEEECSS-CCCTTCEEEEEEEETTEEECHHHHHHHHTSCTTHHHHHS-C
T ss_pred CCCC--CEEEE---CCEEEEEEEEEEC--CEEEEECCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-C
T ss_conf 1479--88999---9998058628713--718998899-999999999986899876189999998689713475087-8
Q ss_pred CCCCEEEEEECCCCEEEEE
Q ss_conf 9887799996799099997
Q gi|254780741|r 337 INMPTIAVKNVDGTIKAIR 355 (367)
Q Consensus 337 ~~~P~~v~~~~~g~~~~~r 355 (367)
...|.+|+. +|++.-++
T Consensus 362 ~Rv~R~Y~~--~~~~~~~~ 378 (388)
T 1bd0_A 362 YRVPRIFFR--HKRIMEVR 378 (388)
T ss_dssp TTSCEEEEE--TTEEEEEE
T ss_pred CCCCEEEEE--CCEEEEEE
T ss_conf 878749948--99798874