HHsearch results for GI: 254780741 and protein with PDBid: 1bd0_A

>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=99.43  E-value=8.5e-10  Score=82.71  Aligned_cols=304  Identities=12%  Similarity=0.129  Sum_probs=175.2

Q ss_pred             CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEE
Q ss_conf             568-97799999999999998533698699954105----9999999998518-748980799998987-3688010885
Q gi|254780741|r    5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAY   77 (367)
Q Consensus         5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~   77 (367)
                      |.| =.|.+.|+.|++.+++... ++.+++--+|||    -...|.+.+.+.| ++|-|+++.|+...+ .|......++
T Consensus         7 ~tw~eIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~ILvl   85 (388)
T 1bd0_A            7 DTWAEVDLDAIYDNVENLRRLLP-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVL   85 (388)
T ss_dssp             SEEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEEC
T ss_pred             CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf             78999969999999999997489-98979999915026488899999999869899998679999999970899858996


Q ss_pred             CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH---
Q ss_conf             377780347886138868985672059999998612345--614899635774431012455786435742788887---
Q gi|254780741|r   78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE---  152 (367)
Q Consensus        78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~---  152 (367)
                      ++.. ++++..+.+....+++.+.+.+..+...++ .+.  +|-|-|            +||  .+|+|+...+..+   
T Consensus        86 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~vhLki------------DTG--M~RlG~~~~e~~~~~~  149 (388)
T 1bd0_A           86 GASR-PADAALAAQQRIALTVFRSDWLEEASALYS-GPFPIHFHLKM------------DTG--MGRLGVKDEEETKRIV  149 (388)
T ss_dssp             SCCC-GGGHHHHHHTTEEEEECCHHHHHHHHHHCC-CSSCEEEEEEB------------CSS--SCSSSBCSHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEEEE------------ECC--CCCCCCCCHHHHHHHH
T ss_conf             1788-689999873266642062999998888761-58863899998------------168--8867878278999999


Q ss_pred             -H----HHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf             -4----3149606653056566-6147899999999989865088750875337766---64455680789999998754
Q gi|254780741|r  153 -S----EIKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQRLKEFSE  223 (367)
Q Consensus       153 -~----~~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~  223 (367)
                       .    ....+.|+..|..+-. .+.+...+.+....+...+.+.....+-++..-.   .+...++             
T Consensus       150 ~~i~~~~~l~~~Gi~tH~a~ad~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~anS~~~l~~~~~~~d-------------  216 (388)
T 1bd0_A          150 ALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFN-------------  216 (388)
T ss_dssp             HHHHHSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTT-------------
T ss_pred             HHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCC-------------
T ss_conf             9998589961678970246732235288999999999999975324540666256777539502376-------------


Q ss_pred             HCCCEEEEEHHHHC----------------CCCCEEEEEEEEEEEC-------C-CCCC--------CCCCCCCCCCCCC
Q ss_conf             21650453002201----------------4574188878878630-------4-4333--------4333356565664
Q gi|254780741|r  224 KYSVQIYLEPGEAI----------------VTNTTTLNTTVLDISE-------N-IKNL--------VIVDSSVEAHVPD  271 (367)
Q Consensus       224 ~~~~~l~iEPGR~l----------------v~~ag~lv~~V~~~K~-------~-~~~~--------v~vd~g~~~~~~~  271 (367)
                            ++=||..+                .-++..+.++|+.+|+       + +..|        +++..|..+-++-
T Consensus       217 ------~vR~Gi~lyG~~p~~~~~~~~~~~Lkpv~~l~a~ii~i~~~~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r  290 (388)
T 1bd0_A          217 ------MVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLR  290 (388)
T ss_dssp             ------EEEECGGGGTCCSCGGGGGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCG
T ss_pred             ------CEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
T ss_conf             ------04133688843777665544445750579999973367775799845557520157783599982140256320


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCC------HHHHHC---------CCCCC
Q ss_conf             001345530002478645998623336664552135667788798999968870------223243---------47689
Q gi|254780741|r  272 YLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAG------YNINRK---------NWFNG  336 (367)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GA------Y~~~~~---------~~Fn~  336 (367)
                      .+..  -.+..   ....+.|.|..|+  |.+.-+... ++++||.+.+....+      -.++..         +.. +
T Consensus       291 ~~~~--~~V~i---~g~~~pivGrvsM--D~~~vDv~~-~~~vGD~V~l~G~~~~~~i~~~~~a~~~~ti~yEil~~l-~  361 (388)
T 1bd0_A          291 RLQH--FHVLV---DGQKAPIVGRICM--DQCMIRLPG-PLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTI-S  361 (388)
T ss_dssp             GGGG--CEEEE---TTEEEEEESCCCS--SCEEEECSS-CCCTTCEEEEEEEETTEEECHHHHHHHHTSCTTHHHHHS-C
T ss_pred             CCCC--CEEEE---CCEEEEEEEEEEC--CEEEEECCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-C
T ss_conf             1479--88999---9998058628713--718998899-999999999986899876189999998689713475087-8


Q ss_pred             CCCCEEEEEECCCCEEEEE
Q ss_conf             9887799996799099997
Q gi|254780741|r  337 INMPTIAVKNVDGTIKAIR  355 (367)
Q Consensus       337 ~~~P~~v~~~~~g~~~~~r  355 (367)
                      ...|.+|+.  +|++.-++
T Consensus       362 ~Rv~R~Y~~--~~~~~~~~  378 (388)
T 1bd0_A          362 YRVPRIFFR--HKRIMEVR  378 (388)
T ss_dssp             TTSCEEEEE--TTEEEEEE
T ss_pred             CCCCEEEEE--CCEEEEEE
T ss_conf             878749948--99798874