HHsearch results for GI: 254780741 and protein with PDBid: 1knw_A

>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00  E-value=0  Score=547.73  Aligned_cols=355  Identities=15%  Similarity=0.194  Sum_probs=294.1

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCC----CCEEE
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880----10885
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGG----ETHAY   77 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~----~~i~~   77 (367)
                      +|||||||++.|++|+++++.+     ++++||+||||++.|+++|++.|+|+||+|++|+++|++ |+++    ++|+|
T Consensus        25 GTP~yv~d~~~l~~~~~~l~~~-----~~v~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~~~~~Ii~   99 (425)
T 1knw_A           25 GCPVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVF   99 (425)
T ss_dssp             CSSEEEEEHHHHHHHHHTTTTS-----SEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEEE
T ss_pred             CCCEEEEEHHHHHHHHHHHHCC-----CEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             9988998799999999985166-----98999951178999999999849978998999999999869996677342797


Q ss_pred             C-CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH----
Q ss_conf             3-77780347886138868985672059999998612345614899635774431012455786435742788887----
Q gi|254780741|r   78 N-VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----  152 (367)
Q Consensus        78 ~-~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----  152 (367)
                      + |.|++++++.|++.+..+++||++|+++|.++++.  .+|++||||+++...+....++...+|||++.+++.+    
T Consensus       100 ~gp~k~~~~l~~a~~~g~~i~~ds~~el~~l~~~~~~--~~v~lRi~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~  177 (425)
T 1knw_A          100 TADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPG--HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDV  177 (425)
T ss_dssp             EESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHSTT--CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             4785569999766540530010258899999750454--53110037886655465555666666554031332477899


Q ss_pred             --HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHH----H
Q ss_conf             --43149606653056566614789999999998986508875087533776664455----6807899999987----5
Q gi|254780741|r  153 --SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEF----S  222 (367)
Q Consensus       153 --~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~----~  222 (367)
                        ....++.|+|||+|||+.+...++. +..+.+...+++.++++||+||||++++..    .+.+.+...+...    .
T Consensus       178 ~~~~~l~~~Glh~H~gS~~~~~~~~~~-~~~~~~~~~~~g~~l~~ldiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (425)
T 1knw_A          178 IQRHHLQLVGIHMHIGSGVDYAHLEQV-CGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIA  256 (425)
T ss_dssp             HHHTTCEEEEEECCCCCTTCHHHHHHH-HHHHHHHHHHHTCCCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEEEEEEEECCCCCHHHHHHH-HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             875592587778740554435788999-8776444320461222344336636477888778758988777889999986


Q ss_pred             HH--CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CC------CCCCEEEE
Q ss_conf             42--165045300220145741888788786304-433343333565656640013455300--02------47864599
Q gi|254780741|r  223 EK--YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATI--YP------NTGPYTAM  291 (367)
Q Consensus       223 ~~--~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~--~~------~~~~~~~~  291 (367)
                      ..  .+++|++|||||+|++||+++++|+++|++ +++|+++|+|+++++++.++..+++..  ..      .....++.
T Consensus       257 ~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (425)
T 1knw_A          257 RHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVETV  336 (425)
T ss_dssp             HHHTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHHCCCCCEEEECTTCCCCTTCCEEEEE
T ss_pred             HHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf             52355249985377540036027999998997259736899775015676766628634125641566544468961799


Q ss_pred             EECCCCCCCCEEEEC-------CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHH
Q ss_conf             862333666455213-------5667788798999968870223243476899887799996799099997-38989998
Q gi|254780741|r  292 VCGRSCLAGDIFGEF-------HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYY  363 (367)
Q Consensus       292 v~G~~C~~~D~l~~~-------~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~  363 (367)
                      |+||||+++|+|+++       ..+|++++||+|+|.||||||++|+++||++|+|++|+++ +|+.+++| |||+||++
T Consensus       337 v~G~tC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~GAYt~s~~s~Fn~~p~p~~v~~~-~g~~~lir~ret~~d~~  415 (425)
T 1knw_A          337 VAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELL  415 (425)
T ss_dssp             EECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEEEE-TTEEEEEECCCCHHHHH
T ss_pred             EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHH
T ss_conf             98069789817854666653335478899899999979763147661745699988789999-99999997889999997


Q ss_pred             HHC
Q ss_conf             742
Q gi|254780741|r  364 NNL  366 (367)
Q Consensus       364 ~~~  366 (367)
                      +|.
T Consensus       416 ~~~  418 (425)
T 1knw_A          416 ALE  418 (425)
T ss_dssp             TTT
T ss_pred             HCC
T ss_conf             317