HHsearch results for GI: 254780741 and protein with PDBid: 1knw_A
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=0 Score=547.73 Aligned_cols=355 Identities=15% Similarity=0.194 Sum_probs=294.1
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCC----CCEEE
Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880----10885
Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGG----ETHAY 77 (367)
Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~----~~i~~ 77 (367)
+|||||||++.|++|+++++.+ ++++||+||||++.|+++|++.|+|+||+|++|+++|++ |+++ ++|+|
T Consensus 25 GTP~yv~d~~~l~~~~~~l~~~-----~~v~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~~~~~Ii~ 99 (425)
T 1knw_A 25 GCPVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVF 99 (425)
T ss_dssp CSSEEEEEHHHHHHHHHTTTTS-----SEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEEE
T ss_pred CCCEEEEEHHHHHHHHHHHHCC-----CEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf 9988998799999999985166-----98999951178999999999849978998999999999869996677342797
Q ss_pred C-CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH----
Q ss_conf 3-77780347886138868985672059999998612345614899635774431012455786435742788887----
Q gi|254780741|r 78 N-VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE---- 152 (367)
Q Consensus 78 ~-~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~---- 152 (367)
+ |.|++++++.|++.+..+++||++|+++|.++++. .+|++||||+++...+....++...+|||++.+++.+
T Consensus 100 ~gp~k~~~~l~~a~~~g~~i~~ds~~el~~l~~~~~~--~~v~lRi~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~ 177 (425)
T 1knw_A 100 TADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPG--HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDV 177 (425)
T ss_dssp EESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHSTT--CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 4785569999766540530010258899999750454--53110037886655465555666666554031332477899
Q ss_pred --HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHH----H
Q ss_conf --43149606653056566614789999999998986508875087533776664455----6807899999987----5
Q gi|254780741|r 153 --SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEF----S 222 (367)
Q Consensus 153 --~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~----~ 222 (367)
....++.|+|||+|||+.+...++. +..+.+...+++.++++||+||||++++.. .+.+.+...+... .
T Consensus 178 ~~~~~l~~~Glh~H~gS~~~~~~~~~~-~~~~~~~~~~~g~~l~~ldiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (425)
T 1knw_A 178 IQRHHLQLVGIHMHIGSGVDYAHLEQV-CGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIA 256 (425)
T ss_dssp HHHTTCEEEEEECCCCCTTCHHHHHHH-HHHHHHHHHHHTCCCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCEEEEEEEEECCCCCHHHHHHH-HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 875592587778740554435788999-8776444320461222344336636477888778758988777889999986
Q ss_pred HH--CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CC------CCCCEEEE
Q ss_conf 42--165045300220145741888788786304-433343333565656640013455300--02------47864599
Q gi|254780741|r 223 EK--YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATI--YP------NTGPYTAM 291 (367)
Q Consensus 223 ~~--~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~--~~------~~~~~~~~ 291 (367)
.. .+++|++|||||+|++||+++++|+++|++ +++|+++|+|+++++++.++..+++.. .. .....++.
T Consensus 257 ~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (425)
T 1knw_A 257 RHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVETV 336 (425)
T ss_dssp HHHTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHHCCCCCEEEECTTCCCCTTCCEEEEE
T ss_pred HHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf 52355249985377540036027999998997259736899775015676766628634125641566544468961799
Q ss_pred EECCCCCCCCEEEEC-------CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHH
Q ss_conf 862333666455213-------5667788798999968870223243476899887799996799099997-38989998
Q gi|254780741|r 292 VCGRSCLAGDIFGEF-------HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYY 363 (367)
Q Consensus 292 v~G~~C~~~D~l~~~-------~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~ 363 (367)
|+||||+++|+|+++ ..+|++++||+|+|.||||||++|+++||++|+|++|+++ +|+.+++| |||+||++
T Consensus 337 v~G~tC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~GAYt~s~~s~Fn~~p~p~~v~~~-~g~~~lir~ret~~d~~ 415 (425)
T 1knw_A 337 VAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELL 415 (425)
T ss_dssp EECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEEEE-TTEEEEEECCCCHHHHH
T ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHH
T ss_conf 98069789817854666653335478899899999979763147661745699988789999-99999997889999997
Q ss_pred HHC
Q ss_conf 742
Q gi|254780741|r 364 NNL 366 (367)
Q Consensus 364 ~~~ 366 (367)
+|.
T Consensus 416 ~~~ 418 (425)
T 1knw_A 416 ALE 418 (425)
T ss_dssp TTT
T ss_pred HCC
T ss_conf 317