HHsearch results for GI: 254780741 and protein with PDBid: 1vfs_A

>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.59  E-value=1.6e-11  Score=94.05  Aligned_cols=292  Identities=13%  Similarity=0.091  Sum_probs=167.7

Q ss_pred             CCCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCE
Q ss_conf             88568-97799999999999998533698699954105----9999999998518-7489807999989873-6880108
Q gi|254780741|r    3 KTPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETH   75 (367)
Q Consensus         3 ~TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i   75 (367)
                      +++.| -.|.+.|+.|++.+++..  ++.+++--+|||    -...|.+.+.+.| .+|-|+++.|+...++ |.....+
T Consensus         5 ~~r~w~EIdl~ai~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~il   82 (386)
T 1vfs_A            5 PTRVYAEIDLDAVRANVRALRARA--PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIM   82 (386)
T ss_dssp             CSSEEEEEEHHHHHHHHHHHHTTS--TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEE
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
T ss_conf             871799986999999999999768--998399999250463879999999998698999981399999999718999858


Q ss_pred             EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             853777803478861388689856720599999986123456--148996357744310124557864357427888874
Q gi|254780741|r   76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES  153 (367)
Q Consensus        76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~  153 (367)
                      ++++. .++++..+.+....+++.|..+++.+.+.++..+.+  |-|.|+            ||  .+|+|+..+++.+.
T Consensus        83 il~~~-~~~~~~~~~~~~~~~~i~s~~~l~~~~~~a~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~  147 (386)
T 1vfs_A           83 CWLWT-PGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKAD------------TG--LGRNGCQPADWAEL  147 (386)
T ss_dssp             ECCCC-TTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBC------------SS--CCSSSBCHHHHHHH
T ss_pred             EEECC-CCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEC------------CC--CCCCCCCHHHHHHH
T ss_conf             99448-70589999860731354759999999999986499824999951------------67--78678583788999


Q ss_pred             H----------HCCCEEEEECCCCCC-CCHHHHHHHHHHHH---HHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHH
Q ss_conf             3----------149606653056566-61478999999999---89865088750875337766---6445568078999
Q gi|254780741|r  154 E----------IKNVNGLMFHNNCEN-KSFLCFSAMLKNIE---KEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQ  216 (367)
Q Consensus       154 ~----------~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~---~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~  216 (367)
                      .          ...+.|+..|..+.. .+.+.....++...   +.+.+.+....++.++..-+   .+...++.     
T Consensus       148 ~~~~~~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~l~~~~~~~d~-----  222 (386)
T 1vfs_A          148 VGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL-----  222 (386)
T ss_dssp             HHHHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSE-----
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCCC-----
T ss_conf             999998621796427999864455577530678999999999999999717886156515863201784014874-----


Q ss_pred             HHHHHHHHCCCEEE---EEHHHHCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99987542165045---30022014574188878878630-------44-3--------334333356565664001345
Q gi|254780741|r  217 RLKEFSEKYSVQIY---LEPGEAIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYLLYQE  277 (367)
Q Consensus       217 ~i~~~~~~~~~~l~---iEPGR~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~~~~~  277 (367)
                       ++-=..-|+..-.   ..|-..=..++..+.++|+.++.       ++ .        .++++..|..+-++-.+.. .
T Consensus       223 -vR~Gi~lYG~~p~~~~~~~~~~~lkpv~~l~a~ii~v~~l~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~-~  300 (386)
T 1vfs_A          223 -VRTGLAVYGVSPSPELGTPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASG-R  300 (386)
T ss_dssp             -EEECGGGGTCCSCGGGCCTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGGTT-T
T ss_pred             -CCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCHHCCCCCCCCC-C
T ss_conf             -25531546677674447643457325579988988999878999657777454047856888703142076634579-7


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECC
Q ss_conf             5300024786459986233366645521356677887989999688
Q gi|254780741|r  278 SATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDV  323 (367)
Q Consensus       278 ~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~  323 (367)
                      -++.   -....+.|.|..|+  |.+.-+...++.++||.+.+..-
T Consensus       301 ~~vl---i~g~~~pivG~vsM--D~~~vDvtd~~~~~GD~V~l~G~  341 (386)
T 1vfs_A          301 GPVL---VAGKIRRAAGRIAM--DQFVVDLGEDLAEAGDEAVILGD  341 (386)
T ss_dssp             CEEE---ETTEEEEBCSCCCS--SCEEEEEETCCCCTTCEEEEECC
T ss_pred             EEEE---ECCEEEEEEEEECC--CEEEEECCCCCCCCCCEEEEEEC
T ss_conf             0699---99999289649623--43899878987898999999978