HHsearch results for GI: 254780741 and protein with PDBid: 2qgh_A
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=0 Score=568.62 Aligned_cols=364 Identities=20% Similarity=0.227 Sum_probs=309.7
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C
Q ss_conf 888568977999999999999985336986999541059999999998518748980799998987-36880108853-7
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V 79 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~ 79 (367)
-+|||||||++.|++|+++++++++..+.+++||+||||++.|+++|.+.|+|+||+|++|+++|+ .|+++++|+|+ |
T Consensus 31 ~gTP~yv~d~~~l~~n~~~~~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp 110 (425)
T 2qgh_A 31 HKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGV 110 (425)
T ss_dssp CCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf 39988998699999999999985799997599997138999999999980993998299999999975998678464256
Q ss_pred CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--
Q ss_conf 77803478861388-68985672059999998612345--61489963577443101245578643574278888743--
Q gi|254780741|r 80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-- 154 (367)
Q Consensus 80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-- 154 (367)
.|++++++.+...+ ..+++||++|+++|.+++++.+. +|+|||||+++...+...+++.+.||||++..+..+..
T Consensus 111 ~k~~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfg~~~~~~~~~~~~ 190 (425)
T 2qgh_A 111 GKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLW 190 (425)
T ss_dssp TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 68889999887638200002137899999999986499747999982798866676523664446665026789999875
Q ss_pred -----HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCC---HHHHHHHHHHHH
Q ss_conf -----14960665305656661478999999999898---6508875087533776664455680---789999998754
Q gi|254780741|r 155 -----IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDYPV---KDFCQRLKEFSE 223 (367)
Q Consensus 155 -----~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~~~---~~~~~~i~~~~~ 223 (367)
..++.|+|||+|||+.+...|.+++..+..++ ...+..++++|+|||+++++..... .+.+........
T Consensus 191 ~~~~~~l~~~Glh~HvgS~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (425)
T 2qgh_A 191 AKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQ 270 (425)
T ss_dssp HHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCCCHHHHHHHHHHHTT
T ss_pred HHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 54204357878997068666660678888888889999999709987767666866767777553108999999887650
Q ss_pred HCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEECCCCC
Q ss_conf 2165045300220145741888788786304-43334333356565664001345530002----478645998623336
Q gi|254780741|r 224 KYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVCGRSCL 298 (367)
Q Consensus 224 ~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~G~~C~ 298 (367)
..++++++||||++|++||+++|+|+++|+. +++|+++|+|+++++++.++..+++.... ++...++.|+||||+
T Consensus 271 ~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GptC~ 350 (425)
T 2qgh_A 271 GLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSKGREISPCDVVGPVCE 350 (425)
T ss_dssp TCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEECSCC---CCEEEEEECSSSS
T ss_pred CCCCEEEECCHHHHHHHCEEEEEEEEEEEECCCEEEEEECCCHHCCCCHHHHCCCCCEEEECCCCCCCCCEEEEECCCCC
T ss_conf 55754885300675532258999999995039904999877421046855604545325402467887427999897868
Q ss_pred CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf 664552135667788798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r 299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367)
Q Consensus 299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367)
++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|+++ +|+++++| |||+||++++.
T Consensus 351 s~D~l~~~~~lP~l~~GD~l~f~~~GAY~~~~~s~Fn~~p~p~~v~~~-~g~~~~i~~ret~~dl~~~~ 418 (425)
T 2qgh_A 351 SSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE-DHKIRVIRKREALEDLWRLE 418 (425)
T ss_dssp TTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEEC-C-CEEEEECCCCGGGGTGGG
T ss_pred CCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHHH
T ss_conf 887985066168999999999989752136451744389998289999-99899997589999999717