HHsearch results for GI: 254780741 and protein with PDBid: 3gwq_A
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.85 E-value=6.4e-17 Score=129.64 Aligned_cols=317 Identities=16% Similarity=0.112 Sum_probs=185.0
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHHHH-CCCCCCCEEECC
Q ss_conf 8885689779999999999999853369869995410599999999985187-48980799998987-368801088537
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVMLGH-EKFGGETHAYNV 79 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~la~-~g~~~~~i~~~~ 79 (367)
|+||+.|+|++.|++|++.++......++++.--+||+..+.|++.+-+.|. |+.|+++.|++..+ +|+. ..++.+|
T Consensus 44 l~tP~lvid~~~l~~Ni~~m~~~~~~~gv~lrph~Kth~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~Gi~-~illa~~ 122 (426)
T 3gwq_A 44 VSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVS-RVLMANQ 122 (426)
T ss_dssp BCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCC-EEEECSC
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC-CEEEECC
T ss_conf 899739984999999999999988756974999811146499999999779987998609999999976999-8799467
Q ss_pred CCCHHHHHHH---HCC---CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHH-
Q ss_conf 7780347886---138---8689856720599999986123456148996357744310124557864357427-8888-
Q gi|254780741|r 80 AYKDCEIDAV---LSN---CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KDKI- 151 (367)
Q Consensus 80 ~~~~~el~~a---~~~---~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~~~- 151 (367)
...++.++.+ ... ...+.+||.++++.+.+.+++.+.++.+.|..+.+ .+|.|+.. ++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDtG------------~~R~G~~~~e~~~~ 190 (426)
T 3gwq_A 123 LVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP------------GGRTGVRDAAQRNA 190 (426)
T ss_dssp CCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT------------TSSSSBCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCCC------------CCCCCCCCHHHHHH
T ss_conf 789799999999863557405999878999999999887568068987650567------------76566666589999
Q ss_pred --HHH-----HCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf --743-----14960665305656661478----999999999898650--88750875337766644556807899999
Q gi|254780741|r 152 --ESE-----IKNVNGLMFHNNCENKSFLC----FSAMLKNIEKEFGHF--ITQIEWISLGGGIHFTDKDYPVKDFCQRL 218 (367)
Q Consensus 152 --~~~-----~~~i~Gih~H~gs~~~~~~~----~~~~l~~~~~~~~~~--~~~l~~idiGGG~~~~~~~~~~~~~~~~i 218 (367)
+.. ...+.|++.|.|+.. +... .++....+.++.++. ......+.-||..+ ....++.+
T Consensus 191 l~~~i~~~~~~l~l~Gi~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~-------~~~~~~~~ 262 (426)
T 3gwq_A 191 VLEAITRYPDTLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW-------YDVVAEEF 262 (426)
T ss_dssp HHHHHHTSTTTEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT-------HHHHHHHT
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC-------HHHHCCCC
T ss_conf 9999985778865669985153347-734399999999999999999853278870464468854-------01003310
Q ss_pred HHHHHHCCCEEEEEHHHHCCC---------------------------CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 987542165045300220145---------------------------74188878878630443334333356565664
Q gi|254780741|r 219 KEFSEKYSVQIYLEPGEAIVT---------------------------NTTTLNTTVLDISENIKNLVIVDSSVEAHVPD 271 (367)
Q Consensus 219 ~~~~~~~~~~l~iEPGR~lv~---------------------------~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~ 271 (367)
............+.||.|+.. .+...+++|..+++ ..++++|.|......+
T Consensus 263 ~~~~~~~~~~~~vrpG~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~~--~~~~~v~~G~~~~~~d 340 (426)
T 3gwq_A 263 VKASETGKVEVVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIPE--PDRAIIGLGKRDSAFD 340 (426)
T ss_dssp HHHHHSSSEEEEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEEE--TTEEEESCCTTTSCGG
T ss_pred CCCCCCCCCEEEECCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEECCCCEEEEEC
T ss_conf 02556764026973447997046311102332001351002333123201688778976556--8759981654687504
Q ss_pred CCCCCCCCCCC--CC------CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE
Q ss_conf 00134553000--24------78645998623336664552135667788798999968870223243476899887799
Q gi|254780741|r 272 YLLYQESATIY--PN------TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA 343 (367)
Q Consensus 272 ~~~~~~~~~~~--~~------~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v 343 (367)
... ++..... .. .....+.|.| |...-.+.+....+++++||.|.|..-=+ | ..||.+ +..+
T Consensus 341 ~g~-~~~~~~~~~g~~~~~~~~~~~~~~i~g--~~dqH~~i~~~~~~~l~vGD~V~~~p~H~-c----~t~~~~--~~~~ 410 (426)
T 3gwq_A 341 AGM-PEPARHYRPGNEAPRDIAASEGWEIFG--LMDQHAYLRIPAGADLKVGDMIAFDISHP-C----LTFDKW--RQVL 410 (426)
T ss_dssp GCC-CEEEEEECTTSSSCEECCGGGCCEEEE--ECSSCEEEECCTTCSCCTTCEEEEECSSG-G----GGGGGC--SEEE
T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCCEEEECCCCCCCCCCCEEEEECCCC-C----CCHHHC--CEEE
T ss_conf 677-756210235666763013799827989--84772089878999899999999982878-8----155519--8899
Q ss_pred EEECCCCE
Q ss_conf 99679909
Q gi|254780741|r 344 VKNVDGTI 351 (367)
Q Consensus 344 ~~~~~g~~ 351 (367)
++++++.+
T Consensus 411 ~vd~~~~v 418 (426)
T 3gwq_A 411 VVDPAYRV 418 (426)
T ss_dssp EECTTSBE
T ss_pred EEECCCEE
T ss_conf 99799969