HHsearch results for GI: 254780741 and protein with PDBid: 3gwq_A

>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.85  E-value=6.4e-17  Score=129.64  Aligned_cols=317  Identities=16%  Similarity=0.112  Sum_probs=185.0

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHHHH-CCCCCCCEEECC
Q ss_conf             8885689779999999999999853369869995410599999999985187-48980799998987-368801088537
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVMLGH-EKFGGETHAYNV   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~la~-~g~~~~~i~~~~   79 (367)
                      |+||+.|+|++.|++|++.++......++++.--+||+..+.|++.+-+.|. |+.|+++.|++..+ +|+. ..++.+|
T Consensus        44 l~tP~lvid~~~l~~Ni~~m~~~~~~~gv~lrph~Kth~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~Gi~-~illa~~  122 (426)
T 3gwq_A           44 VSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVS-RVLMANQ  122 (426)
T ss_dssp             BCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCC-EEEECSC
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC-CEEEECC
T ss_conf             899739984999999999999988756974999811146499999999779987998609999999976999-8799467


Q ss_pred             CCCHHHHHHH---HCC---CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHH-
Q ss_conf             7780347886---138---8689856720599999986123456148996357744310124557864357427-8888-
Q gi|254780741|r   80 AYKDCEIDAV---LSN---CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KDKI-  151 (367)
Q Consensus        80 ~~~~~el~~a---~~~---~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~~~-  151 (367)
                      ...++.++.+   ...   ...+.+||.++++.+.+.+++.+.++.+.|..+.+            .+|.|+.. ++.. 
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDtG------------~~R~G~~~~e~~~~  190 (426)
T 3gwq_A          123 LVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP------------GGRTGVRDAAQRNA  190 (426)
T ss_dssp             CCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT------------TSSSSBCSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCCC------------CCCCCCCCHHHHHH
T ss_conf             789799999999863557405999878999999999887568068987650567------------76566666589999


Q ss_pred             --HHH-----HCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             --743-----14960665305656661478----999999999898650--88750875337766644556807899999
Q gi|254780741|r  152 --ESE-----IKNVNGLMFHNNCENKSFLC----FSAMLKNIEKEFGHF--ITQIEWISLGGGIHFTDKDYPVKDFCQRL  218 (367)
Q Consensus       152 --~~~-----~~~i~Gih~H~gs~~~~~~~----~~~~l~~~~~~~~~~--~~~l~~idiGGG~~~~~~~~~~~~~~~~i  218 (367)
                        +..     ...+.|++.|.|+.. +...    .++....+.++.++.  ......+.-||..+       ....++.+
T Consensus       191 l~~~i~~~~~~l~l~Gi~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~-------~~~~~~~~  262 (426)
T 3gwq_A          191 VLEAITRYPDTLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW-------YDVVAEEF  262 (426)
T ss_dssp             HHHHHHTSTTTEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT-------HHHHHHHT
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC-------HHHHCCCC
T ss_conf             9999985778865669985153347-734399999999999999999853278870464468854-------01003310


Q ss_pred             HHHHHHCCCEEEEEHHHHCCC---------------------------CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             987542165045300220145---------------------------74188878878630443334333356565664
Q gi|254780741|r  219 KEFSEKYSVQIYLEPGEAIVT---------------------------NTTTLNTTVLDISENIKNLVIVDSSVEAHVPD  271 (367)
Q Consensus       219 ~~~~~~~~~~l~iEPGR~lv~---------------------------~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~  271 (367)
                      ............+.||.|+..                           .+...+++|..+++  ..++++|.|......+
T Consensus       263 ~~~~~~~~~~~~vrpG~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~~--~~~~~v~~G~~~~~~d  340 (426)
T 3gwq_A          263 VKASETGKVEVVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIPE--PDRAIIGLGKRDSAFD  340 (426)
T ss_dssp             HHHHHSSSEEEEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEEE--TTEEEESCCTTTSCGG
T ss_pred             CCCCCCCCCEEEECCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEECCCCEEEEEC
T ss_conf             02556764026973447997046311102332001351002333123201688778976556--8759981654687504


Q ss_pred             CCCCCCCCCCC--CC------CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE
Q ss_conf             00134553000--24------78645998623336664552135667788798999968870223243476899887799
Q gi|254780741|r  272 YLLYQESATIY--PN------TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA  343 (367)
Q Consensus       272 ~~~~~~~~~~~--~~------~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v  343 (367)
                      ... ++.....  ..      .....+.|.|  |...-.+.+....+++++||.|.|..-=+ |    ..||.+  +..+
T Consensus       341 ~g~-~~~~~~~~~g~~~~~~~~~~~~~~i~g--~~dqH~~i~~~~~~~l~vGD~V~~~p~H~-c----~t~~~~--~~~~  410 (426)
T 3gwq_A          341 AGM-PEPARHYRPGNEAPRDIAASEGWEIFG--LMDQHAYLRIPAGADLKVGDMIAFDISHP-C----LTFDKW--RQVL  410 (426)
T ss_dssp             GCC-CEEEEEECTTSSSCEECCGGGCCEEEE--ECSSCEEEECCTTCSCCTTCEEEEECSSG-G----GGGGGC--SEEE
T ss_pred             CCC-CCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCCEEEECCCCCCCCCCCEEEEECCCC-C----CCHHHC--CEEE
T ss_conf             677-756210235666763013799827989--84772089878999899999999982878-8----155519--8899


Q ss_pred             EEECCCCE
Q ss_conf             99679909
Q gi|254780741|r  344 VKNVDGTI  351 (367)
Q Consensus       344 ~~~~~g~~  351 (367)
                      ++++++.+
T Consensus       411 ~vd~~~~v  418 (426)
T 3gwq_A          411 VVDPAYRV  418 (426)
T ss_dssp             EECTTSBE
T ss_pred             EEECCCEE
T ss_conf             99799969