HHsearch results for GI: 254780741 and protein with PDBid: 3n2b_A

>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00  E-value=0  Score=596.84  Aligned_cols=363  Identities=17%  Similarity=0.187  Sum_probs=312.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C
Q ss_conf             888568977999999999999985336986999541059999999998518748980799998987-36880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~   79 (367)
                      .+|||||||++.|++|+++|+.+++..+.+++||+||||++.||++|++.|+|+||+|.+|+++|+ +|+++++|+|+ |
T Consensus        50 ~gTP~yvyd~~~i~~~~~~l~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~G~Dv~S~~El~~al~aG~~~~~Iv~~g~  129 (441)
T 3n2b_A           50 YGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGV  129 (441)
T ss_dssp             HCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCEEECCC
T ss_conf             69988998799999999999987605899899996138989999999983993898699999999973999210486266


Q ss_pred             CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---
Q ss_conf             77803478861388-68985672059999998612345--6148996357744310124557864357427888874---
Q gi|254780741|r   80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---  153 (367)
Q Consensus        80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---  153 (367)
                      .|++++++.|++.+ ..+++||++||++|.+++++.+.  +|+|||||+++..++..+.+++..||||++.+++.+.   
T Consensus       130 ~K~~~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~skfGi~~~~~~~~~~~  209 (441)
T 3n2b_A          130 GKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRL  209 (441)
T ss_dssp             TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             79889999998624454344307799999988886199976999992588866663415687767667657889999997


Q ss_pred             ----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHH
Q ss_conf             ----314960665305656661478999999999898---65088750875337766644556----8078999999875
Q gi|254780741|r  154 ----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFS  222 (367)
Q Consensus       154 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~  222 (367)
                          ...++.|+|||+|||+.+.+.|.++++.+.+++   .+.+.++++||+||||+++|...    +............
T Consensus       210 ~~~~~~l~l~Glh~HiGSq~~~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiGGG~~~~y~~~~~~~~~~~~~~~~~~~~  289 (441)
T 3n2b_A          210 AHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLE  289 (441)
T ss_dssp             HHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCEEC-----CEECHHHHHHHHHHT
T ss_pred             HHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             51046826999995168763453899999999999999999709970046633775767775566224566665655540


Q ss_pred             HHCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCEEEEEECCCCC
Q ss_conf             42165045300220145741888788786304-43334333356565664001345530002---478645998623336
Q gi|254780741|r  223 EKYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---NTGPYTAMVCGRSCL  298 (367)
Q Consensus       223 ~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~G~~C~  298 (367)
                      ...+++|++||||+||++||++||+|+++|++ +++|+++|+|++++++|+++..+++....   +....++.|+||+|+
T Consensus       290 ~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~vivD~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~Gp~C~  369 (441)
T 3n2b_A          290 RHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEAQTYDLVGPVCE  369 (441)
T ss_dssp             TTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC-------CCEEESSCCSSCCEEEEEECSSSS
T ss_pred             CCCCCEEECCCCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHCCCCCEECCCCCCCCCEEEEEEECCCC
T ss_conf             36671672077500333661799999998663982599993401100236664464312324578899428999811757


Q ss_pred             CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf             664552135667788798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r  299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL  366 (367)
Q Consensus       299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~  366 (367)
                      ++|+|+++..+| +++||+|+|.+||||+++|+|+||++|+|++|+++ +|+.++|| |||++|++++.
T Consensus       370 s~D~l~~~~~lp-l~~GD~lv~~~~GAY~~s~ssnfN~~p~p~~v~v~-~~~~~lir~re~~~dl~~~~  436 (441)
T 3n2b_A          370 TSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD-GNKTYLVRQREELSSLWALE  436 (441)
T ss_dssp             TTCEEEEEEEEC-CCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCGGGGGTTB
T ss_pred             CCCEEEECCCCC-CCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHCCC
T ss_conf             885993511168-99999999849474356563823389998589999-99899997899999996447