HHsearch results for GI: 254780741 and protein with PDBid: 3n2b_A
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=0 Score=596.84 Aligned_cols=363 Identities=17% Similarity=0.187 Sum_probs=312.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C
Q ss_conf 888568977999999999999985336986999541059999999998518748980799998987-36880108853-7
Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V 79 (367)
Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~ 79 (367)
.+|||||||++.|++|+++|+.+++..+.+++||+||||++.||++|++.|+|+||+|.+|+++|+ +|+++++|+|+ |
T Consensus 50 ~gTP~yvyd~~~i~~~~~~l~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~G~Dv~S~~El~~al~aG~~~~~Iv~~g~ 129 (441)
T 3n2b_A 50 YGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGV 129 (441)
T ss_dssp HCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT
T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCEEECCC
T ss_conf 69988998799999999999987605899899996138989999999983993898699999999973999210486266
Q ss_pred CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---
Q ss_conf 77803478861388-68985672059999998612345--6148996357744310124557864357427888874---
Q gi|254780741|r 80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES--- 153 (367)
Q Consensus 80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~--- 153 (367)
.|++++++.|++.+ ..+++||++||++|.+++++.+. +|+|||||+++..++..+.+++..||||++.+++.+.
T Consensus 130 ~K~~~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~skfGi~~~~~~~~~~~ 209 (441)
T 3n2b_A 130 GKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRL 209 (441)
T ss_dssp TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 79889999998624454344307799999988886199976999992588866663415687767667657889999997
Q ss_pred ----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHH
Q ss_conf ----314960665305656661478999999999898---65088750875337766644556----8078999999875
Q gi|254780741|r 154 ----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFS 222 (367)
Q Consensus 154 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~ 222 (367)
...++.|+|||+|||+.+.+.|.++++.+.+++ .+.+.++++||+||||+++|... +............
T Consensus 210 ~~~~~~l~l~Glh~HiGSq~~~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiGGG~~~~y~~~~~~~~~~~~~~~~~~~~ 289 (441)
T 3n2b_A 210 AHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLE 289 (441)
T ss_dssp HHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCEEC-----CEECHHHHHHHHHHT
T ss_pred HHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 51046826999995168763453899999999999999999709970046633775767775566224566665655540
Q ss_pred HHCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCEEEEEECCCCC
Q ss_conf 42165045300220145741888788786304-43334333356565664001345530002---478645998623336
Q gi|254780741|r 223 EKYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---NTGPYTAMVCGRSCL 298 (367)
Q Consensus 223 ~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~G~~C~ 298 (367)
...+++|++||||+||++||++||+|+++|++ +++|+++|+|++++++|+++..+++.... +....++.|+||+|+
T Consensus 290 ~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~vivD~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~Gp~C~ 369 (441)
T 3n2b_A 290 RHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEAQTYDLVGPVCE 369 (441)
T ss_dssp TTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC-------CCEEESSCCSSCCEEEEEECSSSS
T ss_pred CCCCCEEECCCCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHCCCCCEECCCCCCCCCEEEEEEECCCC
T ss_conf 36671672077500333661799999998663982599993401100236664464312324578899428999811757
Q ss_pred CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf 664552135667788798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r 299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367)
Q Consensus 299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367)
++|+|+++..+| +++||+|+|.+||||+++|+|+||++|+|++|+++ +|+.++|| |||++|++++.
T Consensus 370 s~D~l~~~~~lp-l~~GD~lv~~~~GAY~~s~ssnfN~~p~p~~v~v~-~~~~~lir~re~~~dl~~~~ 436 (441)
T 3n2b_A 370 TSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD-GNKTYLVRQREELSSLWALE 436 (441)
T ss_dssp TTCEEEEEEEEC-CCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCGGGGGTTB
T ss_pred CCCEEEECCCCC-CCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHCCC
T ss_conf 885993511168-99999999849474356563823389998589999-99899997899999996447