Query gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 367 No_of_seqs 119 out of 2648 Neff 7.8 Searched_HMMs 23785 Date Mon May 30 14:02:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780741.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3mt1_A Putative carboxynorsper 100.0 0 0 650.7 31.4 364 1-367 1-365 (365) 2 3n29_A Carboxynorspermidine de 100.0 0 0 630.2 31.3 361 2-365 42-417 (418) 3 3n2b_A Diaminopimelate decarbo 100.0 0 0 596.8 32.8 363 2-366 50-436 (441) 4 2p3e_A Diaminopimelate decarbo 100.0 0 0 577.8 35.1 361 3-366 33-417 (420) 5 2qgh_A Diaminopimelate decarbo 100.0 0 0 568.6 34.6 364 2-366 31-418 (425) 6 2yxx_A Diaminopimelate decarbo 100.0 0 0 559.2 34.6 361 3-366 12-384 (386) 7 1twi_A Diaminopimelate decarbo 100.0 0 0 557.4 35.0 363 3-366 29-427 (434) 8 2j66_A BTRK, decarboxylase; bu 100.0 0 0 550.7 36.5 362 2-366 15-416 (428) 9 2o0t_A Diaminopimelate decarbo 100.0 0 0 553.4 31.9 361 3-365 41-446 (467) 10 1knw_A Diaminopimelate decarbo 100.0 0 0 547.7 33.4 355 3-366 25-418 (425) 11 2oo0_A ODC, ornithine decarbox 100.0 0 0 544.7 29.1 350 3-362 47-436 (471) 12 7odc_A Protein (ornithine deca 100.0 0 0 542.3 28.4 349 2-360 36-424 (424) 13 1f3t_A ODC, ornithine decarbox 100.0 0 0 539.9 30.1 348 3-360 37-424 (425) 14 3btn_A Antizyme inhibitor 1; T 100.0 0 0 537.0 24.4 351 3-365 37-427 (448) 15 2plj_A Lysine/ornithine decarb 100.0 0 0 525.6 30.9 335 3-347 54-409 (419) 16 2nva_A Arginine decarboxylase, 100.0 0 0 502.4 31.4 333 3-345 16-372 (372) 17 3nzp_A Arginine decarboxylase; 100.0 0 0 432.8 33.9 363 2-366 43-563 (619) 18 3nzq_A ADC, biosynthetic argin 100.0 0 0 409.1 36.0 364 2-366 84-613 (666) 19 3n2o_A ADC, biosynthetic argin 100.0 0 0 401.4 33.5 364 2-366 62-596 (648) 20 3gwq_A D-serine deaminase; YP_ 99.8 6.4E-17 2.7E-21 129.6 31.3 317 2-351 44-418 (426) 21 3llx_A Predicted amino acid al 99.7 7.7E-15 3.2E-19 116.0 24.6 311 2-349 12-365 (376) 22 1vfs_A Alanine racemase; TIM-b 99.6 1.6E-11 6.8E-16 94.1 27.0 292 3-323 5-341 (386) 23 1rcq_A Catabolic alanine racem 99.4 2.6E-10 1.1E-14 86.1 22.9 290 6-324 5-326 (357) 24 1bd0_A Alanine racemase; isome 99.4 8.5E-10 3.6E-14 82.7 25.3 304 5-355 7-378 (388) 25 3e5p_A Alanine racemase; ALR, 99.4 6.3E-10 2.6E-14 83.6 24.0 277 5-322 8-335 (371) 26 3kw3_A Alanine racemase; niaid 99.4 1.6E-09 6.9E-14 80.8 25.9 291 6-323 22-345 (376) 27 3co8_A Alanine racemase; prote 99.4 1.4E-09 5.8E-14 81.3 24.3 289 4-324 8-337 (380) 28 2rjg_A Alanine racemase; alpha 99.4 1.5E-09 6.2E-14 81.1 23.8 292 4-324 23-348 (379) 29 2vd8_A Alanine racemase; pyrid 99.4 1.6E-08 6.7E-13 74.3 29.0 316 7-354 14-384 (391) 30 3oo2_A Alanine racemase 1; inf 99.4 3.8E-09 1.6E-13 78.4 24.9 290 5-324 11-338 (385) 31 1xfc_A Alanine racemase; alpha 99.3 8.5E-09 3.6E-13 76.1 24.9 289 7-324 14-345 (384) 32 3hur_A Alanine racemase; struc 99.3 3E-09 1.3E-13 79.1 22.1 291 2-324 6-341 (395) 33 2dy3_A Alanine racemase; alpha 99.1 4.9E-07 2.1E-11 64.5 23.7 271 8-327 7-333 (361) 34 1w8g_A YGGS, hypothetical UPF0 95.3 0.15 6.2E-06 28.4 18.5 159 28-200 27-204 (234) 35 3cpg_A Uncharacterized protein 95.2 0.16 6.6E-06 28.2 16.9 176 11-199 22-245 (282) 36 1vc3_B L-aspartate-alpha-decar 90.4 0.86 3.6E-05 23.4 6.9 67 285-356 29-95 (96) 37 1pqh_A Aspartate 1-decarboxyla 81.8 2.4 0.0001 20.4 5.6 67 285-356 70-136 (143) 38 2c45_A Aspartate 1-decarboxyla 81.7 2.4 0.0001 20.4 5.8 67 285-356 53-119 (139) 39 1uhe_A Aspartate 1-decarboxyla 81.2 2.5 0.00011 20.3 5.8 64 284-354 27-91 (97) 40 1phz_A Protein (phenylalanine 66.5 5.1 0.00021 18.3 3.7 46 7-52 4-59 (429) 41 1toh_A Tyroh, tyrosine hydroxy 58.0 8.2 0.00034 16.9 4.9 10 99-108 113-122 (343) 42 2p0o_A Hypothetical protein DU 48.1 10 0.00043 16.3 2.7 33 285-322 327-359 (372) 43 2prv_A Uncharacterized protein 42.4 14 0.0006 15.3 5.3 52 315-366 86-137 (153) 44 1i60_A IOLI protein; beta barr 42.2 14 0.0006 15.3 7.8 15 219-233 129-143 (278) 45 3oug_A Aspartate 1-decarboxyla 37.4 17 0.00071 14.8 5.7 58 285-348 56-113 (114) 46 1yht_A DSPB; beta barrel, hydr 34.6 19 0.00079 14.6 5.1 116 99-229 92-213 (367) 47 2f9h_A PTS system, IIA compone 33.7 19 0.00081 14.5 3.5 28 298-325 102-129 (129) 48 3cyv_A URO-D, UPD, uroporphyri 31.0 21 0.0009 14.2 4.7 12 173-184 176-187 (354) 49 1olt_A Oxygen-independent copr 27.9 24 0.001 13.8 4.6 26 160-185 207-232 (457) 50 2vef_A Dihydropteroate synthas 27.3 25 0.001 13.8 2.9 19 238-256 273-291 (314) 51 2ot2_A Hydrogenase isoenzymes 25.7 26 0.0011 13.6 1.8 15 308-322 38-52 (90) 52 1c7s_A Beta-N-acetylhexosamini 24.0 28 0.0012 13.4 4.8 30 172-201 483-512 (858) 53 1v97_A XD, xanthine dehydrogen 21.8 31 0.0013 13.1 3.8 44 160-206 759-802 (1332) 54 2z1c_A Hydrogenase expression/ 21.6 32 0.0013 13.1 2.2 16 307-322 31-46 (75) No 1 >3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Probab=100.00 E-value=0 Score=650.68 Aligned_cols=364 Identities=57% Similarity=0.986 Sum_probs=338.8 Q ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECC Q ss_conf 98885689779999999999999853369869995410599999999985187489807999989873-68801088537 Q gi|254780741|r 1 MIKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNV 79 (367) Q Consensus 1 ~i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~ 79 (367) ||+|||||||++.|++|+++++.+++.++++++||+||||++.|++++++.|+|+||+|.+|+++|++ |+++.+|++ + T Consensus 1 ~l~TP~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~vl~~l~~~g~g~dvaS~~El~~a~~~g~~~~~i~~-~ 79 (365) T 3mt1_A 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERFGKETHAYS-V 79 (365) T ss_dssp -CCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHTTTSCEEEESSHHHHHHHHHHTCSEEEEEE-S T ss_pred CCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEE-C T ss_conf 999987997799999999999986512697899998316889999999980984996689999999965899661772-3 Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE Q ss_conf 77803478861388689856720599999986123456148996357744310124557864357427888874314960 Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVN 159 (367) Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~ 159 (367) ++++++++.+++.+..|++||++||+++.+.++ +.+|+|||||+++..+++.++++.+.||||+...+..+....++. T Consensus 80 ~~~~~~~~~~~~~g~~i~vDs~~El~~i~~~~~--~~~v~lRinp~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~l~ 157 (365) T 3mt1_A 80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAA--GIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRIN 157 (365) T ss_dssp CCCTTTHHHHHHHCSEEEESSHHHHHHHGGGGT--TSEEEEEECCC----------------CCSBCCHHHHHTTGGGCS T ss_pred CCCCCHHHHHHHCCCEEEEECHHHHHHHHHHHC--CCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 567409999997399899938889999998720--665689972466754423421678755431769999999873176 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCC Q ss_conf 66530565666147899999999989865088750875337766644556807899999987542165045300220145 Q gi|254780741|r 160 GLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVT 239 (367) Q Consensus 160 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~ 239 (367) |+|||+|||+.+.+.|.+++..+.+.+.+++.++++|||||||++++++.+++.+++.+++..+++++++++|||||||+ T Consensus 158 g~h~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~~~~idiGGGf~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva 237 (365) T 3mt1_A 158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASIT 237 (365) T ss_dssp EEEECCC--CCSHHHHHHHHHHHHHHHHHHHTTSSEEECCSCCCTTSTTCCHHHHHHHHHHHHHHHTCEEEECCSHHHHT T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCEEHH T ss_conf 47987587887578999999999999898689847898078767765102358999999999743145311477523400 Q ss_pred CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEE Q ss_conf 74188878878630443334333356565664001345530002478645998623336664552135667788798999 Q gi|254780741|r 240 NTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRIS 319 (367) Q Consensus 240 ~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~ 319 (367) +||+++++|+++|+++++|+++|+|+++++++.+.+...+.+.++++.++|.|+||||+++|+|+++..+|++++||+|+ T Consensus 238 ~ag~lv~~V~~~k~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~ 317 (365) T 3mt1_A 238 KSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRIS 317 (365) T ss_dssp TSEEEEEEEEEEEESSSEEEEESCCHHHHCHHHHHTTCCCCCSSCCSSEEEEEECSSCCSSCEEEEEEESSCCCTTCEEE T ss_pred CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCEEE T ss_conf 65699999999998985799825754456654334455212357777415633379888776881246578999999999 Q ss_pred EECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHCC Q ss_conf 968870223243476899887799996799099997389899987429 Q gi|254780741|r 320 FEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNNLS 367 (367) Q Consensus 320 i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~~~ 367 (367) |.|+|||+++|+++||++|+|++|++++||+++++||||||||++||| T Consensus 318 ~~~~GAY~~~~~s~Fn~~~~P~~v~~~~dg~~~~irr~~~~d~~~~~~ 365 (365) T 3mt1_A 318 FQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS 365 (365) T ss_dssp ESSCCTTSTTSCCCGGGCCCCEEEEECTTSCEEEEECCCHHHHHHHHC T ss_pred EECCCHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHCC T ss_conf 918844446661557899998799996799299995397899886557 No 2 >3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Probab=100.00 E-value=0 Score=630.20 Aligned_cols=361 Identities=38% Similarity=0.679 Sum_probs=325.3 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEECCCC Q ss_conf 88856897799999999999998533698699954105999999999851874898079999898736880108853777 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYNVAY 81 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~~~~ 81 (367) ++|||||||++.|++|+++++.+++.++++++||+||||++.||++|++.|+|+||+|++|++++..+++++.|+++|++ T Consensus 42 ~~TP~yVyd~~~i~~n~~~l~~a~~~~~~~i~YAvKAN~~~~vl~~l~~~g~g~dv~S~~El~la~~~~~~~ii~~~p~k 121 (418) T 3n29_A 42 IQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAF 121 (418) T ss_dssp CCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHHHHSCEEEESSHHHHHHHHHHTCSEEEEEESSC T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCEEEECCCC T ss_conf 59998997699999999999987603798899996437998999999970992995299999985456998079949989 Q ss_pred CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEE Q ss_conf 80347886138868985672059999998612345614899635774431012455786435742788887431496066 Q gi|254780741|r 82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGL 161 (367) Q Consensus 82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gi 161 (367) +++|++.+++.+..|++||++||++|.+.++ ..+|+|||||+++.+.++.+++++..||||++.+++.+....++.|+ T Consensus 122 ~~~ei~~a~~~g~~i~~DS~~El~~i~~~~~--~~~v~lRvnp~~~~~~~~~~~~~g~~skfGi~~~~~~~~~~~~i~gl 199 (418) T 3n29_A 122 KEDEIGEIASLSHHIVFNSLAQFHKFQSKTQ--KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGL 199 (418) T ss_dssp CHHHHHHHHHHCSEEEESSHHHHHHHGGGCT--TSEEEEEBCCCCC----------CTTCCSSBCGGGGTTCCCTTCCEE T ss_pred CHHHHHHHHHCCCEEEECCHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf 8999999998399899769899999997577--99589999358777877410146777634575788877776336403 Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCC Q ss_conf 53056566614789999999998986508875087533776664455680789999998754216504530022014574 Q gi|254780741|r 162 MFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNT 241 (367) Q Consensus 162 h~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~a 241 (367) |||+||++. ...+.+.++.+.+.+++++.++++|||||||++++++++++++++.++++.+++++++|+||||||||+| T Consensus 200 h~H~gs~~~-~~~l~~~~~~~~~~~~~~~~~l~~ldiGGGf~v~y~~~~~~~~~~~i~~~~~~~~~~liiEPGR~lva~a 278 (418) T 3n29_A 200 HFHALCEES-ADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQT 278 (418) T ss_dssp ECCCCSSBC-HHHHHHHHHHHHHHHGGGTTTCSEEECCSCBCTTSTTCCHHHHHHHHHHHHHHHTCEEEECCSHHHHTTS T ss_pred EECCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCEEEECCCC T ss_conf 216786773-5899999999999999647774477615734667565699999999999987538864874530010373 Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCEEEEEECCCCCCCCEEEEC Q ss_conf 1888788786304433343333565656640013455300---------------0247864599862333666455213 Q gi|254780741|r 242 TTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATI---------------YPNTGPYTAMVCGRSCLAGDIFGEF 306 (367) Q Consensus 242 g~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~v~G~~C~~~D~l~~~ 306 (367) |++||+|+++|+++.+|+++|+|+.+++++.+++...+.+ .+.+..++|+|+||||+++|+|+++ T Consensus 279 g~lvt~V~~vK~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Gp~C~s~D~l~~~ 358 (418) T 3n29_A 279 GNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEY 358 (418) T ss_dssp EEEEEEEEEEEESSSEEEEESSCHHHHSHHHHHTTCCCCBTTEEEEECTTCCBCCCCCTTCEEEEEECSSSCTTCEEEEE T ss_pred EEEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEC T ss_conf 69999999995458648999786435784377630474313254445444433556678814899981798987598204 Q ss_pred CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHH Q ss_conf 56677887989999688702232434768998877999967990999973898999874 Q gi|254780741|r 307 HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNN 365 (367) Q Consensus 307 ~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~ 365 (367) .++|++++||+|+|.|||||+++|+++||++|+|++|++++||++++||||||+||..| T Consensus 359 ~~lp~l~~GD~l~~~~~GAY~~s~ss~FN~~p~Pa~vl~~~~g~~~~IR~~~~~d~~~r 417 (418) T 3n29_A 359 AFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLR 417 (418) T ss_dssp EESSCCCTTCEEEESSCSSSSGGGCCCGGGCCCCEEEEECTTSCEEEEECCCTHHHHTT T ss_pred CCCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHC T ss_conf 76789999999999287544454523367999880999978995999962887777516 No 3 >3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Probab=100.00 E-value=0 Score=596.84 Aligned_cols=363 Identities=17% Similarity=0.187 Sum_probs=312.4 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C Q ss_conf 888568977999999999999985336986999541059999999998518748980799998987-36880108853-7 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V 79 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~ 79 (367) .+|||||||++.|++|+++|+.+++..+.+++||+||||++.||++|++.|+|+||+|.+|+++|+ +|+++++|+|+ | T Consensus 50 ~gTP~yvyd~~~i~~~~~~l~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~G~Dv~S~~El~~al~aG~~~~~Iv~~g~ 129 (441) T 3n2b_A 50 YGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGV 129 (441) T ss_dssp HCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT T ss_pred HCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCEEECCC T ss_conf 69988998799999999999987605899899996138989999999983993898699999999973999210486266 Q ss_pred CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--- Q ss_conf 77803478861388-68985672059999998612345--6148996357744310124557864357427888874--- Q gi|254780741|r 80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES--- 153 (367) Q Consensus 80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~--- 153 (367) .|++++++.|++.+ ..+++||++||++|.+++++.+. +|+|||||+++..++..+.+++..||||++.+++.+. T Consensus 130 ~K~~~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~skfGi~~~~~~~~~~~ 209 (441) T 3n2b_A 130 GKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRL 209 (441) T ss_dssp TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHHHH T ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 79889999998624454344307799999988886199976999992588866663415687767667657889999997 Q ss_pred ----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHH Q ss_conf ----314960665305656661478999999999898---65088750875337766644556----8078999999875 Q gi|254780741|r 154 ----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFS 222 (367) Q Consensus 154 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~ 222 (367) ...++.|+|||+|||+.+.+.|.++++.+.+++ .+.+.++++||+||||+++|... +............ T Consensus 210 ~~~~~~l~l~Glh~HiGSq~~~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiGGG~~~~y~~~~~~~~~~~~~~~~~~~~ 289 (441) T 3n2b_A 210 AHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLE 289 (441) T ss_dssp HHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCEEC-----CEECHHHHHHHHHHT T ss_pred HHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 51046826999995168763453899999999999999999709970046633775767775566224566665655540 Q ss_pred HHCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCEEEEEECCCCC Q ss_conf 42165045300220145741888788786304-43334333356565664001345530002---478645998623336 Q gi|254780741|r 223 EKYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---NTGPYTAMVCGRSCL 298 (367) Q Consensus 223 ~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~G~~C~ 298 (367) ...+++|++||||+||++||++||+|+++|++ +++|+++|+|++++++|+++..+++.... +....++.|+||+|+ T Consensus 290 ~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~vivD~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~Gp~C~ 369 (441) T 3n2b_A 290 RHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEAQTYDLVGPVCE 369 (441) T ss_dssp TTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC-------CCEEESSCCSSCCEEEEEECSSSS T ss_pred CCCCCEEECCCCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHCCCCCEECCCCCCCCCEEEEEEECCCC T ss_conf 36671672077500333661799999998663982599993401100236664464312324578899428999811757 Q ss_pred CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC Q ss_conf 664552135667788798999968870223243476899887799996799099997-38989998742 Q gi|254780741|r 299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367) Q Consensus 299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367) ++|+|+++..+| +++||+|+|.+||||+++|+|+||++|+|++|+++ +|+.++|| |||++|++++. T Consensus 370 s~D~l~~~~~lp-l~~GD~lv~~~~GAY~~s~ssnfN~~p~p~~v~v~-~~~~~lir~re~~~dl~~~~ 436 (441) T 3n2b_A 370 TSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD-GNKTYLVRQREELSSLWALE 436 (441) T ss_dssp TTCEEEEEEEEC-CCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCGGGGGTTB T ss_pred CCCEEEECCCCC-CCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHCCC T ss_conf 885993511168-99999999849474356563823389998589999-99899997899999996447 No 4 >2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5} Probab=100.00 E-value=0 Score=577.82 Aligned_cols=361 Identities=18% Similarity=0.248 Sum_probs=309.8 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367) +|||||||++.|++|++++++++ ++++++||+||||+|.|++++++.|+|+||+|.+|++++++ |+++++|+|+ |. T Consensus 33 gTP~yv~d~~~i~~~~~~l~~~~--p~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~g~~ 110 (420) T 2p3e_A 33 GTPLYVYSSNFIKERFEAYRKAF--PDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVG 110 (420) T ss_dssp CSSEEEEEHHHHHHHHHHHHHHS--TTSEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECSSC T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCHHHEEECCCC T ss_conf 99889999999999999999868--9988999977689999999999809982897289999999817985677872434 Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---- Q ss_conf 7803478861388-6898567205999999861234--56148996357744310124557864357427888874---- Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---- 153 (367) Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---- 153 (367) |++++++.|++.+ ..+++||++|+++|...+++.+ .+|+|||||+.+...+....+++..||||++..+..+. T Consensus 111 k~~~~l~~a~~~gv~~~~~ds~~El~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~ 190 (420) T 2p3e_A 111 KTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYA 190 (420) T ss_dssp CCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHH T ss_pred CCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 42045898987393373148989999999888733999479999815878666755357776555664403447889999 Q ss_pred ---HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHHH Q ss_conf ---314960665305656661478999999999898---65088750875337766644556----80789999998754 Q gi|254780741|r 154 ---EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFSE 223 (367) Q Consensus 154 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~~ 223 (367) ...++.|+|||+|||+.+.+.|.++++.+.+++ .+.+..+++|||||||++++... +.+.+.+..+.... T Consensus 191 ~~~~~l~~~Glh~H~gS~~~~~~~~~~ai~~~~~l~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (420) T 2p3e_A 191 SKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLE 270 (420) T ss_dssp HTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCCSTTCCCCCHHHHHHHHTTTC- T ss_pred HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 88459608898744766788848877678899999999997398856441258878656776544104668899999864 Q ss_pred HCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEEEECCCCCC Q ss_conf 2165045300220145741888788786304-4333433335656566400134553000---24786459986233366 Q gi|254780741|r 224 KYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY---PNTGPYTAMVCGRSCLA 299 (367) Q Consensus 224 ~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~G~~C~~ 299 (367) ..+++|++|||||+|++||+++++|+++|++ +++|+++|+|+++++++.++..++.... .+....++.|+||||++ T Consensus 271 ~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~ 350 (420) T 2p3e_A 271 NVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETKERKKVVADIVGPICET 350 (420) T ss_dssp -CCSEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCCCCEEESBCCC---CEEEEECSSSST T ss_pred CCCCEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCCCCHHHHCCCCCEEEECCCCCCEEEEEEEECCCCC T ss_conf 55978999047467513699999999998379827999957747755635514431112301578880589999768689 Q ss_pred CCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC Q ss_conf 64552135667788798999968870223243476899887799996799099997-38989998742 Q gi|254780741|r 300 GDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367) Q Consensus 300 ~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367) +|+|+.+..+|++++||+|+|.|+|||+++|+++||++|+|++|+++ +|+.+++| |||+||++++. T Consensus 351 ~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~Fn~~p~p~~v~v~-~g~~~lir~~et~ed~~~~~ 417 (420) T 2p3e_A 351 GDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVE-NGSVKLIRKRENYDYIVEPS 417 (420) T ss_dssp TCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEEE-TTEEEEEECCCCHHHHHGGG T ss_pred CCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHHC T ss_conf 98992266378899999999979673245562733389988399998-99799997689999998634 No 5 >2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Probab=100.00 E-value=0 Score=568.62 Aligned_cols=364 Identities=20% Similarity=0.227 Sum_probs=309.7 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C Q ss_conf 888568977999999999999985336986999541059999999998518748980799998987-36880108853-7 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V 79 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~ 79 (367) -+|||||||++.|++|+++++++++..+.+++||+||||++.|+++|.+.|+|+||+|++|+++|+ .|+++++|+|+ | T Consensus 31 ~gTP~yv~d~~~l~~n~~~~~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp 110 (425) T 2qgh_A 31 HKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGV 110 (425) T ss_dssp CCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT T ss_pred HCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC T ss_conf 39988998699999999999985799997599997138999999999980993998299999999975998678464256 Q ss_pred CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-- Q ss_conf 77803478861388-68985672059999998612345--61489963577443101245578643574278888743-- Q gi|254780741|r 80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-- 154 (367) Q Consensus 80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-- 154 (367) .|++++++.+...+ ..+++||++|+++|.+++++.+. +|+|||||+++...+...+++.+.||||++..+..+.. T Consensus 111 ~k~~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfg~~~~~~~~~~~~ 190 (425) T 2qgh_A 111 GKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLW 190 (425) T ss_dssp TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 68889999887638200002137899999999986499747999982798866676523664446665026789999875 Q ss_pred -----HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCC---HHHHHHHHHHHH Q ss_conf -----14960665305656661478999999999898---6508875087533776664455680---789999998754 Q gi|254780741|r 155 -----IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDYPV---KDFCQRLKEFSE 223 (367) Q Consensus 155 -----~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~~~---~~~~~~i~~~~~ 223 (367) ..++.|+|||+|||+.+...|.+++..+..++ ...+..++++|+|||+++++..... .+.+........ T Consensus 191 ~~~~~~l~~~Glh~HvgS~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (425) T 2qgh_A 191 AKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQ 270 (425) T ss_dssp HHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCCCHHHHHHHHHHHTT T ss_pred HHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 54204357878997068666660678888888889999999709987767666866767777553108999999887650 Q ss_pred HCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEECCCCC Q ss_conf 2165045300220145741888788786304-43334333356565664001345530002----478645998623336 Q gi|254780741|r 224 KYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVCGRSCL 298 (367) Q Consensus 224 ~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~G~~C~ 298 (367) ..++++++||||++|++||+++|+|+++|+. +++|+++|+|+++++++.++..+++.... ++...++.|+||||+ T Consensus 271 ~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GptC~ 350 (425) T 2qgh_A 271 GLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSKGREISPCDVVGPVCE 350 (425) T ss_dssp TCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEECSCC---CCEEEEEECSSSS T ss_pred CCCCEEEECCHHHHHHHCEEEEEEEEEEEECCCEEEEEECCCHHCCCCHHHHCCCCCEEEECCCCCCCCCEEEEECCCCC T ss_conf 55754885300675532258999999995039904999877421046855604545325402467887427999897868 Q ss_pred CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC Q ss_conf 664552135667788798999968870223243476899887799996799099997-38989998742 Q gi|254780741|r 299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367) Q Consensus 299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367) ++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|+++ +|+++++| |||+||++++. T Consensus 351 s~D~l~~~~~lP~l~~GD~l~f~~~GAY~~~~~s~Fn~~p~p~~v~~~-~g~~~~i~~ret~~dl~~~~ 418 (425) T 2qgh_A 351 SSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE-DHKIRVIRKREALEDLWRLE 418 (425) T ss_dssp TTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEEC-C-CEEEEECCCCGGGGTGGG T ss_pred CCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHHH T ss_conf 887985066168999999999989752136451744389998289999-99899997589999999717 No 6 >2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8} Probab=100.00 E-value=0 Score=559.16 Aligned_cols=361 Identities=17% Similarity=0.179 Sum_probs=305.5 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEECC-C Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-368801088537-7 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYNV-A 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~~-~ 80 (367) +|||||||++.|++|+++++++++..+++++||+||||++.|+++|.+.|+|+||+|.+|+++|+ .|+++++|+|++ . T Consensus 12 GTP~yv~d~~~l~~~~~~l~~~~~~~~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~ii~~~~~ 91 (386) T 2yxx_A 12 GTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNG 91 (386) T ss_dssp CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSC T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCEEEECCCC T ss_conf 99889998999999999999745778968999960078599999999839967995999999999818997548862898 Q ss_pred CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH----HHH Q ss_conf 78034788613886-8985672059999998612345614899635774431012455786435742788887----431 Q gi|254780741|r 81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----SEI 155 (367) Q Consensus 81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----~~~ 155 (367) |++++++.|.+.+. .+++|+.+|++++... ...+.++++|+||++.........++.+.++||+..++... ... T Consensus 92 k~~~~l~~a~~~gv~~~~~d~~~~~~~~~~~-~~~~~~i~lri~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 170 (386) T 2yxx_A 92 KSRDQMEHFLREDVRIVNVDSFEEMEIWREL-NPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS 170 (386) T ss_dssp CCHHHHHHHHHTTCCEEEECCHHHHHHHHHH-CCTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGHHHHHHHHTT T ss_pred CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 9999999998639751024328999999875-033410565436885666776221377667665035555689987431 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEHH Q ss_conf 4960665305656661478999999999898650887508753377666445568078999999875-421650453002 Q gi|254780741|r 156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS-EKYSVQIYLEPG 234 (367) Q Consensus 156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~iEPG 234 (367) .++.|+|||+|||+.+...|.+++..+.+..... .+++|||||||++++.+...+.......... ....+++++||| T Consensus 171 ~~l~GlhfHvgS~~~~~~~~~~a~~~~~~~~~~~--~~~~idiGGGf~~~~~~~~~~~~~~~~~~~~~~~~~~~li~EPG 248 (386) T 2yxx_A 171 MNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY--GFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFKRVIVEIG 248 (386) T ss_dssp SCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH--TCSEEECCCCBCCCSSSCCCCHHHHHHHTGGGGTTCSEEEEEEC T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC T ss_conf 7804898744865445540667999999986305--98566346745777776432167899999876255874998771 Q ss_pred HHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCEEEEEECCCCCCCCEEEECCCCCC Q ss_conf 20145741888788786304-4333433335656566400134553000--24786459986233366645521356677 Q gi|254780741|r 235 EAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY--PNTGPYTAMVCGRSCLAGDIFGEFHFEKP 311 (367) Q Consensus 235 R~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~G~~C~~~D~l~~~~~~~~ 311 (367) ||||++||+++|+|+++|++ +++|+++|+|++++++|.++..+++... .+....+++|+||||+++|+|+++..+|+ T Consensus 249 R~lva~~g~lvt~V~~~k~~~~~~~~i~D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~tC~~~D~l~~~~~lP~ 328 (386) T 2yxx_A 249 RYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVIAYDRELPE 328 (386) T ss_dssp HHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTCCCCSEEEEEECSSSSTTCEEEEEEEESC T ss_pred HHHHHCCEEEEEEEEEEEECCCCEEEEECCCHHHCCCCHHHCCCCEEEECCCCCCCCEEEEECCCCCCCCEECCCCCCCC T ss_conf 20311853899999997314982799999821203573541354205741456775627998867898888834551798 Q ss_pred CCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC Q ss_conf 88798999968870223243476899887799996799099997-38989998742 Q gi|254780741|r 312 VKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367) Q Consensus 312 l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367) +++||+|+|.|+|||+++|+++||++|+|++++++++|+++++| |||+||++++. T Consensus 329 l~~GD~l~f~~~GAY~~~~~~~Fn~~~~P~~v~v~~~g~~~~ir~~et~ed~~~~~ 384 (386) T 2yxx_A 329 VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDV 384 (386) T ss_dssp CCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEECCCCHHHHTTTC T ss_pred CCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHCC T ss_conf 99999999949861047553665689988499997698499997689999997404 No 7 >1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Probab=100.00 E-value=0 Score=557.37 Aligned_cols=363 Identities=20% Similarity=0.250 Sum_probs=303.9 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHH------CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCE Q ss_conf 8856897799999999999998533------69869995410599999999985187489807999989873-6880108 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKN------AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETH 75 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~------~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i 75 (367) +|||||||++.|++|+++++.+|+. .+++++||+||||++.|++++.+.|+|+||+|.+|+++|++ |+++++| T Consensus 29 GTP~yv~d~~~l~~n~~~l~~af~~~~~~~g~~~~i~YAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~I 108 (434) T 1twi_A 29 GTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKI 108 (434) T ss_dssp CSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGE T ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCEE T ss_conf 99889987999999999999988776762388759999862489999999999849983997899999999638998718 Q ss_pred EEC-CCCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 853-777803478861388-68985672059999998612345--61489963577443101245578643574278888 Q gi|254780741|r 76 AYN-VAYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI 151 (367) Q Consensus 76 ~~~-~~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~ 151 (367) +|+ |.|++++++.|++.+ ..+++||.+|++++.+.+++.+. +|++||||+.+...+..+.++...+|||+..++.. T Consensus 109 i~~gp~k~~~~l~~a~~~gv~~~~~ds~~el~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~~~fg~~~~~~~ 188 (434) T 1twi_A 109 VFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGI 188 (434) T ss_dssp EECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSH T ss_pred EECCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 98489899999998986897067311356788999999982998628999605768776744025766555664300046 Q ss_pred ---------HHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHH Q ss_conf ---------74314960665305656661478999999999898---65088750875337766644556----807899 Q gi|254780741|r 152 ---------ESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFC 215 (367) Q Consensus 152 ---------~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~ 215 (367) +....++.|+|||+|||+.+...|.+.++.+.+++ .+.+.++++||+||||++++... +.+.+. T Consensus 189 ~~~~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~~ 268 (434) T 1twi_A 189 AMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQIPTQKDLA 268 (434) T ss_dssp HHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECCCCBCCCSSSSSCCCCHHHHH T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCHHHHH T ss_conf 89999999864899725788983565344315899999999999999985998037787476752304788886479999 Q ss_pred HHHHHHHH----H-CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC Q ss_conf 99998754----2-165045300220145741888788786304-43334333356565664001345530002--4786 Q gi|254780741|r 216 QRLKEFSE----K-YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP--NTGP 287 (367) Q Consensus 216 ~~i~~~~~----~-~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~--~~~~ 287 (367) ..+..... . .+++|++|||||+|++||++||+|+++|++ +..|+++|+|++++++|.++..+++.... .... T Consensus 269 ~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (434) T 1twi_A 269 DAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKNEK 348 (434) T ss_dssp HHHHHHHHTTTTTSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHHCCCCCEEESBCCSCE T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCEEEECCCCCCC T ss_conf 99998875442036786799526708874776899999976315872699981576787622444223034402578997 Q ss_pred EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC Q ss_conf 45998623336664552135667788798999968870223243476899887799996799099997-38989998742 Q gi|254780741|r 288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL 366 (367) Q Consensus 288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~ 366 (367) .++.|+||||+++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|+++ +++.+++| |||+||+++|. T Consensus 349 ~~~~i~G~tC~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~FN~~~~p~~v~v~-~~~~~~ir~~et~ed~~~~~ 427 (434) T 1twi_A 349 EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS-KKGVFLIRERETYADLIAKD 427 (434) T ss_dssp EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCHHHHTTTB T ss_pred CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHCC T ss_conf 18999990888988888261668999899999859750317561866699988399998-99289997689899997478 No 8 >2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Probab=100.00 E-value=0 Score=550.69 Aligned_cols=362 Identities=18% Similarity=0.229 Sum_probs=301.6 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C Q ss_conf 888568977999999999999985336986999541059999999998518748980799998987-36880108853-7 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V 79 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~ 79 (367) .+|||||||++.|++|+++++.++. ++++++||+||||++.|++++.+.|+|+||+|.+|+++|+ .|+++++|+|+ | T Consensus 15 ~gTP~yV~d~~~i~~n~~~l~~~~~-~~~~i~yA~KaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~ii~~gp 93 (428) T 2j66_A 15 FETPFYLYDGDFIEAHYRQLRSRTN-PAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALARHAGFSAENIIFSGP 93 (428) T ss_dssp SCSSEEEEEHHHHHHHHHHHHHTSC-TTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCS T ss_pred HCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC T ss_conf 1998899889999999999985268-997899997427999999999981992997399999999974999201897688 Q ss_pred CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH--- Q ss_conf 77803478861388-68985672059999998612345--6148996357744310124557864357427888874--- Q gi|254780741|r 80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES--- 153 (367) Q Consensus 80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~--- 153 (367) .|++++++.+++.+ ..+++||.+|+++|...++..+. ++++|++|+.+.. .....++...||||++.+++.+. T Consensus 94 ~k~~~~l~~a~~~gv~~~~~d~~~el~~i~~~~~~~~~~~~v~~r~~~~~~~~-~~~~~~g~~~skfg~~~~~~~~~~~~ 172 (428) T 2j66_A 94 GKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFG-STAIKMGGVPRQFGMDESMLDAVMDA 172 (428) T ss_dssp CCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC---CCCSSSCCCCSSSEEGGGHHHHHHH T ss_pred CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-EEEEECCCCCHHCCCCHHHHHHHHHH T ss_conf 89899998777359511036789999999998886399616885127765431-12210477710026548989889987 Q ss_pred ----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHH Q ss_conf ----314960665305656661478999999999898----6508875087533776664455----6807899999987 Q gi|254780741|r 154 ----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF----GHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEF 221 (367) Q Consensus 154 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~----~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~ 221 (367) ...++.|+|||+|||+.+.+.|.++++.+.+.+ .+++..+++||+||||++++.+ .+++.+++.+... T Consensus 173 ~~~~~~l~~~G~H~h~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~~~~i~~~ 252 (428) T 2j66_A 173 VRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVSDY 252 (428) T ss_dssp HHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCCC--CCCCCHHHHHHHHHHH T ss_pred HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 64203442588888478774410359999999999999999965986304431588787654456642078899999988 Q ss_pred HHHC------CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC--------CCC---CC Q ss_conf 5421------65045300220145741888788786304-433343333565656640013455--------300---02 Q gi|254780741|r 222 SEKY------SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQES--------ATI---YP 283 (367) Q Consensus 222 ~~~~------~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~--------~~~---~~ 283 (367) .++. +++||+|||||+|++||+++++|+++|++ +.+|+++|+|+++++++.++.... ... .+ T Consensus 253 ~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (428) T 2j66_A 253 VQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSMRSNYPMEYIPVREDSG 332 (428) T ss_dssp HHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC-----------CEEEEC------ T ss_pred HHHHHHCCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCEEEEECCEEECCCCHHHCCCCCCCCCEEEEEEECCCCC T ss_conf 76532025887469972455570010526799999971698518998761001563243463212232047774047777 Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCC-CCCCCCCCEEEEEECCCCEEEEE-ECCHHH Q ss_conf 4786459986233366645521356677887989999688702232434-76899887799996799099997-389899 Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKN-WFNGINMPTIAVKNVDGTIKAIR-EFSYND 361 (367) Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~-~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d 361 (367) +....+++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|++ +||++|+|++|+++ +|+++++| |||+|| T Consensus 333 ~~~~~~~~i~G~tC~~~D~l~~~~~lp~l~~GD~lvf~~~GAY~~s~s~~~fn~~p~p~~v~~~-~g~~~lirrret~ed 411 (428) T 2j66_A 333 RRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKR-NGSYELIRRKGTADD 411 (428) T ss_dssp ---CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEE-TTEEEEEECCCCHHH T ss_pred CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE-CCEEEEEECCCCHHH T ss_conf 7885079998018998767653542688999999999088623565630022399998499998-998999978898999 Q ss_pred HHHHC Q ss_conf 98742 Q gi|254780741|r 362 YYNNL 366 (367) Q Consensus 362 ~~~~~ 366 (367) ++.+. T Consensus 412 ~~~~~ 416 (428) T 2j66_A 412 IVATQ 416 (428) T ss_dssp HHGGG T ss_pred HHHCC T ss_conf 98533 No 9 >2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A Probab=100.00 E-value=0 Score=553.38 Aligned_cols=361 Identities=15% Similarity=0.211 Sum_probs=302.3 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367) +|||||||++.|++|+++|+.++. ++++++||+||||++.|++++.+.|+|+||+|++|+++|++ |+++++|+|+ |. T Consensus 41 GTP~yV~d~~~i~~n~~~l~~af~-~~~~i~yAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~Ii~~gp~ 119 (467) T 2o0t_A 41 GTPLFVIDEDDFRSRCRETAAAFG-SGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNN 119 (467) T ss_dssp CSSEEEEEHHHHHHHHHHHHHHTS-SGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCTT T ss_pred CCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEEECCC T ss_conf 999899889999999999998568-9987999874288799999999819979998999999999759893329991898 Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH------- Q ss_conf 7803478861388-68985672059999998612345--6148996357744310124557864357427888------- Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK------- 150 (367) Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~------- 150 (367) |++++++.++..+ ..+++||++|++++.+++++.+. +|++|+||++....+....++...||||+...+. T Consensus 120 k~~~~l~~a~~~gv~~i~iDs~~El~~l~~~~~~~~~~~~v~lrl~~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~ 199 (467) T 2o0t_A 120 KSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVR 199 (467) T ss_dssp CCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHH T ss_pred CCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 99999998775043258846789999999987763987413453204766555422346645565576501567899999 Q ss_pred --HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH--------HHCCCCCEEEEECCCCCCCCC----CCCCHHHHH Q ss_conf --874314960665305656661478999999999898--------650887508753377666445----568078999 Q gi|254780741|r 151 --IESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF--------GHFITQIEWISLGGGIHFTDK----DYPVKDFCQ 216 (367) Q Consensus 151 --~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~--------~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~ 216 (367) .+....++.|+|||+|||+.+.+.|.+.+..+.+++ .+.+..+++||+||||++++. ..+++.+++ T Consensus 200 ~~~~~~~~~l~Glh~H~gs~~~d~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ld~GGG~~~~~~~~~~~~~~~~~~~ 279 (467) T 2o0t_A 200 RVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAA 279 (467) T ss_dssp HHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCCCCCHHHHHH T ss_pred HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHH T ss_conf 99735698577898863888787088999999999988889986567507563210331786746777788887789999 Q ss_pred HHHHHHH----HC---CCEEEEEHHHHCCCCCEEEEEEEEEEEC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 9998754----21---6504530022014574188878878630------443334333356565664001345530002 Q gi|254780741|r 217 RLKEFSE----KY---SVQIYLEPGEAIVTNTTTLNTTVLDISE------NIKNLVIVDSSVEAHVPDYLLYQESATIYP 283 (367) Q Consensus 217 ~i~~~~~----~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~------~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~ 283 (367) .+....+ .. ++++++||||++|++||.++++|..+|. ++++|+++|+|++++++++++..+++.... T Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~EPGR~lv~~ag~llt~V~~~~~~~~~~~~~~~~~~vdag~~~~~~~~~~~~~~~~~~~ 359 (467) T 2o0t_A 280 KLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRLV 359 (467) T ss_dssp HHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESCCTTTCCHHHHHCCCCCEEEC T ss_pred HHHHHHHHHHHHCCCCCCEEEECCCEEEEECCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEC T ss_conf 99999998753205767508986630786544799999999974202323765899988765456685671875634852 Q ss_pred ----CCCCEEEEEECCCCCCCCEEEECCCCC-CCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-EC Q ss_conf ----478645998623336664552135667-788798999968870223243476899887799996799099997-38 Q gi|254780741|r 284 ----NTGPYTAMVCGRSCLAGDIFGEFHFEK-PVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EF 357 (367) Q Consensus 284 ----~~~~~~~~v~G~~C~~~D~l~~~~~~~-~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e 357 (367) +....++.|+||||+++|+|+.+..+| ++++||+|+|.|||||+++|+++||++|+|++|+++ +|+.++|| || T Consensus 360 ~~~~~~~~~~~~v~G~tC~~~D~l~~~~~lP~~l~~GD~l~f~~~GAY~~~~s~~fN~~~~P~~v~v~-~g~~~lir~re 438 (467) T 2o0t_A 360 SRVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH-AGNARLVLRRE 438 (467) T ss_dssp SSCCCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCCCCEEEEEE-TTEEEEEECCC T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCC T ss_conf 57788982699999658799879925656888899999999859213247774836589998389999-99699998889 Q ss_pred CHHHHHHH Q ss_conf 98999874 Q gi|254780741|r 358 SYNDYYNN 365 (367) Q Consensus 358 ~~~d~~~~ 365 (367) |+||++++ T Consensus 439 t~ed~~~~ 446 (467) T 2o0t_A 439 TVDDLLSL 446 (467) T ss_dssp CHHHHHTT T ss_pred CHHHHHHH T ss_conf 99999853 No 10 >1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Probab=100.00 E-value=0 Score=547.73 Aligned_cols=355 Identities=15% Similarity=0.194 Sum_probs=294.1 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCC----CCEEE Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880----10885 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGG----ETHAY 77 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~----~~i~~ 77 (367) +|||||||++.|++|+++++.+ ++++||+||||++.|+++|++.|+|+||+|++|+++|++ |+++ ++|+| T Consensus 25 GTP~yv~d~~~l~~~~~~l~~~-----~~v~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~~~~~Ii~ 99 (425) T 1knw_A 25 GCPVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVF 99 (425) T ss_dssp CSSEEEEEHHHHHHHHHTTTTS-----SEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEEE T ss_pred CCCEEEEEHHHHHHHHHHHHCC-----CEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEE T ss_conf 9988998799999999985166-----98999951178999999999849978998999999999869996677342797 Q ss_pred C-CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH---- Q ss_conf 3-77780347886138868985672059999998612345614899635774431012455786435742788887---- Q gi|254780741|r 78 N-VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE---- 152 (367) Q Consensus 78 ~-~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~---- 152 (367) + |.|++++++.|++.+..+++||++|+++|.++++. .+|++||||+++...+....++...+|||++.+++.+ T Consensus 100 ~gp~k~~~~l~~a~~~g~~i~~ds~~el~~l~~~~~~--~~v~lRi~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~ 177 (425) T 1knw_A 100 TADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPG--HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDV 177 (425) T ss_dssp EESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHSTT--CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHH T ss_pred CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 4785569999766540530010258899999750454--53110037886655465555666666554031332477899 Q ss_pred --HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHH----H Q ss_conf --43149606653056566614789999999998986508875087533776664455----6807899999987----5 Q gi|254780741|r 153 --SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEF----S 222 (367) Q Consensus 153 --~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~----~ 222 (367) ....++.|+|||+|||+.+...++. +..+.+...+++.++++||+||||++++.. .+.+.+...+... . T Consensus 178 ~~~~~l~~~Glh~H~gS~~~~~~~~~~-~~~~~~~~~~~g~~l~~ldiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (425) T 1knw_A 178 IQRHHLQLVGIHMHIGSGVDYAHLEQV-CGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIA 256 (425) T ss_dssp HHHTTCEEEEEECCCCCTTCHHHHHHH-HHHHHHHHHHHTCCCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHHHHHHHH T ss_pred HHHCCCEEEEEEEEECCCCCHHHHHHH-HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 875592587778740554435788999-8776444320461222344336636477888778758988777889999986 Q ss_pred HH--CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CC------CCCCEEEE Q ss_conf 42--165045300220145741888788786304-433343333565656640013455300--02------47864599 Q gi|254780741|r 223 EK--YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATI--YP------NTGPYTAM 291 (367) Q Consensus 223 ~~--~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~--~~------~~~~~~~~ 291 (367) .. .+++|++|||||+|++||+++++|+++|++ +++|+++|+|+++++++.++..+++.. .. .....++. T Consensus 257 ~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (425) T 1knw_A 257 RHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVETV 336 (425) T ss_dssp HHHTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHHCCCCCEEEECTTCCCCTTCCEEEEE T ss_pred HHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEE T ss_conf 52355249985377540036027999998997259736899775015676766628634125641566544468961799 Q ss_pred EECCCCCCCCEEEEC-------CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHH Q ss_conf 862333666455213-------5667788798999968870223243476899887799996799099997-38989998 Q gi|254780741|r 292 VCGRSCLAGDIFGEF-------HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYY 363 (367) Q Consensus 292 v~G~~C~~~D~l~~~-------~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~ 363 (367) |+||||+++|+|+++ ..+|++++||+|+|.||||||++|+++||++|+|++|+++ +|+.+++| |||+||++ T Consensus 337 v~G~tC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~GAYt~s~~s~Fn~~p~p~~v~~~-~g~~~lir~ret~~d~~ 415 (425) T 1knw_A 337 VAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELL 415 (425) T ss_dssp EECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEEEE-TTEEEEEECCCCHHHHH T ss_pred EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHH T ss_conf 98069789817854666653335478899899999979763147661745699988789999-99999997889999997 Q ss_pred HHC Q ss_conf 742 Q gi|254780741|r 364 NNL 366 (367) Q Consensus 364 ~~~ 366 (367) +|. T Consensus 416 ~~~ 418 (425) T 1knw_A 416 ALE 418 (425) T ss_dssp TTT T ss_pred HCC T ss_conf 317 No 11 >2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Probab=100.00 E-value=0 Score=544.70 Aligned_cols=350 Identities=19% Similarity=0.201 Sum_probs=290.5 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-36880108853-77 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~ 80 (367) +|||||||.+.|++|++++++++ |+++++||+||||++.||++|++.|+|+||+|.+|+++|+ .|+++++|+|+ |. T Consensus 47 ~~pfyv~D~~~i~~~~~~~~~~~--P~v~~~YAvKaN~~~~il~~l~~~G~G~DvaS~~El~~al~aG~~~~~Iif~gp~ 124 (471) T 2oo0_A 47 KDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPC 124 (471) T ss_dssp CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC T ss_conf 98779978999999999999868--9977987751089899999999849949985999999999769894529997999 Q ss_pred CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------ Q ss_conf 78034788613886-89856720599999986123456148996357744310124557864357427888874------ Q gi|254780741|r 81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------ 153 (367) Q Consensus 81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------ 153 (367) |++++|+.|++.+. +|++||++||++|.+..+ ..+|++||||+... .++...+|||++.+++... T Consensus 125 K~~~el~~A~~~gv~~i~~dS~~EL~~i~~~~~--~~~v~lRi~~~~~~------~~~~~~~kFG~~~~~~~~~~~~~~~ 196 (471) T 2oo0_A 125 KQVSQIKYAANNGVQMMTFDSEVELMKVARAHP--KAKLVLRIATDDSK------AVCRLSVKFGATLRTSRLLLERAKE 196 (471) T ss_dssp CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCT--TCEEEEEECCCCTT------SSBCCTTTSCBCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC--CCCEECCCCCCCCC------CCEECCCCCCCCHHHHHHHHHHHHH T ss_conf 999999999986997999689899999998602--68420345678643------3011366766448999999998875 Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHH----- Q ss_conf 31496066530565666147899999999989---8650887508753377666445-56807899999987542----- Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKE---FGHFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEK----- 224 (367) Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~----- 224 (367) ...++.|||||+|||+.+.+.|.+.++.+.++ ..+++..+++|||||||++++. +.+++.++..+.....+ T Consensus 197 ~~l~~~GlH~HiGS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~ldiGGGf~~~~~~~~~~e~~~~~i~~~~~~~~~~~ 276 (471) T 2oo0_A 197 LNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSD 276 (471) T ss_dssp TTCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCSSSSSSSCHHHHHHHHHHHHHHHSCGG T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 59518999997588767728899999987788988876086533322477756556665567889999988888750247 Q ss_pred CCCEEEEEHHHHCCCCCEEEEEEEEEEECC---------------CCCCCCCCCCCCCCCCCCCCCCCCCC--CC----C Q ss_conf 165045300220145741888788786304---------------43334333356565664001345530--00----2 Q gi|254780741|r 225 YSVQIYLEPGEAIVTNTTTLNTTVLDISEN---------------IKNLVIVDSSVEAHVPDYLLYQESAT--IY----P 283 (367) Q Consensus 225 ~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~---------------~~~~v~vd~g~~~~~~~~~~~~~~~~--~~----~ 283 (367) .++++++|||||||++||+++|+|+++|.. ...++++|+|+++.+++.++...++. .. + T Consensus 277 ~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~l~~~~~~~~~~~~~~~~ 356 (471) T 2oo0_A 277 SGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKP 356 (471) T ss_dssp GTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTGGGHHHHSCCCCCCEESSCCCT T ss_pred CCCEEEEECCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCC T ss_conf 89579961771576411899999999997313223434434566734899987544553134553036502454367787 Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE-CCHHHH Q ss_conf 4786459986233366645521356677887989999688702232434768998877999967990999973-898999 Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE-FSYNDY 362 (367) Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~-e~~~d~ 362 (367) ++...+++|+||||+++|+|+++..+|++++||+|+|.++|||+++|+|+||++|+|++|++++++.+++||| |++|.. T Consensus 357 ~~~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~l~~~~~GAY~~s~ss~fN~~~~P~~v~v~~~~~~~lirr~e~~d~~ 436 (471) T 2oo0_A 357 DEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFP 436 (471) T ss_dssp TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHHHHCC---- T ss_pred CCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCH T ss_conf 78776899995587888889455077889999999992985512766476779999808999938957999427787561 No 12 >7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Probab=100.00 E-value=0 Score=542.27 Aligned_cols=349 Identities=19% Similarity=0.212 Sum_probs=290.4 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C Q ss_conf 8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V 79 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~ 79 (367) .+|||||||++.|++|+++++.++ |+++++||+||||++.|+++|.+.|+|+||+|.+|+++|++ |+++++|+|+ | T Consensus 36 ~~~pfyv~d~~~i~~~~~~~~~~~--P~v~~~YAvKaN~~~~il~~l~~~G~g~dvaS~~El~~al~~G~~~~~Iv~~gp 113 (424) T 7odc_A 36 DKDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANP 113 (424) T ss_dssp CCCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCS T ss_pred CCCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCC T ss_conf 998789958999999999999868--998799885108989999999984992999799999999986979040999799 Q ss_pred CCCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---- Q ss_conf 778034788613886-898567205999999861234561489963577443101245578643574278888743---- Q gi|254780741|r 80 AYKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE---- 154 (367) Q Consensus 80 ~~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~---- 154 (367) .|++++|+.|++.+. ++++||++||+++.+.++ ..++.+|++++... .++...+|||++.+++.+.. T Consensus 114 ~K~~~~i~~A~~~gv~~i~~ds~~EL~~l~~~~~--~~~v~~Ri~~~~~~------~~~~~~skFG~~~~~~~~~~~~~~ 185 (424) T 7odc_A 114 CKQVSQIKYAASNGVQMMTFDSEIELMKVARAHP--KAKLVLRIATDDSK------AVCRLSVKFGATLKTSRLLLERAK 185 (424) T ss_dssp SCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCT--TCEEEEEBCC-----------------CCCBCHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC--CCCCCEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9999999999985995788789999999998553--57752365148754------556766778857899999999876 Q ss_pred --HCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHC--- Q ss_conf --149606653056566614789999999998---98650887508753377666445-568078999999875421--- Q gi|254780741|r 155 --IKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEKY--- 225 (367) Q Consensus 155 --~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~~--- 225 (367) ..++.|+|||+|||+.+.+.|.+.++.+.. ...+++.++++|||||||++++. +.++++++..++...+++ T Consensus 186 ~~~l~~~Glh~HvgS~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~~~~~~~~~~~~~~~~i~~~~~~~~~~ 265 (424) T 7odc_A 186 ELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPS 265 (424) T ss_dssp HTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCG T ss_pred HCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 45972889999728887741779988888889999999719873067736876776666410577888899999987330 Q ss_pred --CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CC--------------CCCCCCCCCCCCCCCCCCCCCCCCCCC----- Q ss_conf --65045300220145741888788786304-43--------------334333356565664001345530002----- Q gi|254780741|r 226 --SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IK--------------NLVIVDSSVEAHVPDYLLYQESATIYP----- 283 (367) Q Consensus 226 --~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~--------------~~v~vd~g~~~~~~~~~~~~~~~~~~~----- 283 (367) +++||+|||||+|++||+++++|+++|.. ++ .++.+|+|++..++|.++..+++.... T Consensus 266 ~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~ 345 (424) T 7odc_A 266 DSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPK 345 (424) T ss_dssp GGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTHHHHHSCCCCCCEESSCCC T ss_pred CCCCEEEECCCHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCC T ss_conf 68964997797230111606999999999832533321344344563589998665466503456424550365446888 Q ss_pred -CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHH Q ss_conf -478645998623336664552135667788798999968870223243476899887799996799099997-38989 Q gi|254780741|r 284 -NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYN 360 (367) Q Consensus 284 -~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~ 360 (367) ++...++.|+||+|+++|+|+++..+|++++||+|+|.+|||||++|+|+||++|+|++|++.+++.+.++| ||||. T Consensus 346 ~~~~~~~~~i~Gp~C~~~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fN~~~~P~~~~v~~~~~~~~ir~~et~~ 424 (424) T 7odc_A 346 PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQIQSHG 424 (424) T ss_dssp TTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHC------ T ss_pred CCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCCC T ss_conf 8787778999975858887886454678999999999849884127655645799999689999689659999467799 No 13 >1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Probab=100.00 E-value=0 Score=539.90 Aligned_cols=348 Identities=20% Similarity=0.233 Sum_probs=281.7 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367) +|||||||++.|++|++++++++ ++++++||+||||++.||+++++.|+|+||+|++|+++|++ |+++++|+|+ |. T Consensus 37 GTP~yv~d~~~i~~~~~~~~~a~--p~~~~~YAvKAN~~~~il~~l~~~G~g~dv~S~gEl~~al~~G~~~~~Iv~~gp~ 114 (425) T 1f3t_A 37 GDPFFVADLGDIVRKHETWKKCL--PRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPC 114 (425) T ss_dssp CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSS T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC T ss_conf 99579958999999999999868--9987999863489899999999829939984999999999769796749996898 Q ss_pred CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------ Q ss_conf 78034788613886-89856720599999986123456148996357744310124557864357427888874------ Q gi|254780741|r 81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------ 153 (367) Q Consensus 81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------ 153 (367) |+++||+.+++.+. .+++||++|++++.+..+ ..++++|++|.... .++...||||++.+++.+. T Consensus 115 Ks~~el~~a~~~gi~~~~~ds~~el~~i~~~~~--~~~v~~ri~~~~~~------~~~~~~skFG~~~~~~~~~l~~~~~ 186 (425) T 1f3t_A 115 KQISHIRYARDSGVDVMTFDCVDELEKVAKTHP--KAKMVLRISTDDSL------ARCRLSVKFGAKVEDCRFILEQAKK 186 (425) T ss_dssp CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCT--TCEEEEEBCC----------------CCSCBCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCEECCHHHHHHHHHHHHHCC--CCCEEEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 999999999983974712788999999986445--67626785045543------3355777776657888999988763 Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHC---- Q ss_conf 3149606653056566614789999999998---986508875087533776664455-68078999999875421---- Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTDKD-YPVKDFCQRLKEFSEKY---- 225 (367) Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~~---- 225 (367) ...++.|||||+|||+.+.+.|.+.++.+.. ...+.+..+++||+||||++++.. .+.+++++.+.+..++. T Consensus 187 ~~l~l~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 266 (425) T 1f3t_A 187 LNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPD 266 (425) T ss_dssp TTCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCCCSSTTSSSCHHHHHHHHHHHHHHHSCCC T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC T ss_conf 26469999988788877458899999999999888887099521431166657666786214678888777665401456 Q ss_pred -CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCC--------------CCCCCCCCCCCCCCCCCCCC------CC Q ss_conf -65045300220145741888788786304-4333433--------------33565656640013455300------02 Q gi|254780741|r 226 -SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIV--------------DSSVEAHVPDYLLYQESATI------YP 283 (367) Q Consensus 226 -~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~v--------------d~g~~~~~~~~~~~~~~~~~------~~ 283 (367) +++|++||||||||+||+++|+|+++|++ +.++.+. +.|++...++.++.+..... .+ T Consensus 267 ~~~~li~EPGR~lva~ag~llt~V~~~K~~~g~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (425) T 1f3t_A 267 LKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIP 346 (425) T ss_dssp TTCEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEESCCTTTGGGHHHHSCCCCCCEECSCCCT T ss_pred CCCEEEEECHHHHHHEEEEEEEEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHCCCCCEECCCCCCCCC T ss_conf 78279981506753024799999999996488068874033456313589841566775131112553110135668888 Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHH Q ss_conf 478645998623336664552135667788798999968870223243476899887799996799099997-38989 Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYN 360 (367) Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~ 360 (367) ++...+++|+||+|+++|+|++++.+|++++||+|+|.|||||+++|+++||++|+|+++++.++++.+++| |||+| T Consensus 347 ~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~fn~~~~P~~v~v~~g~~~~~iR~ret~e 424 (425) T 1f3t_A 347 NEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKSQK 424 (425) T ss_dssp TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEECCSCSTTHHHHHCC-- T ss_pred CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCCC T ss_conf 887778999922878787886454888899999999959684348662856699998099999199469986677778 No 14 >3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Probab=100.00 E-value=0 Score=537.04 Aligned_cols=351 Identities=17% Similarity=0.197 Sum_probs=281.8 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-36880108853-77 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~ 80 (367) +|||||||++.|++|+++++.++ ++++++||+||||++.||++|.+.|+|+||+|.+|+++|+ .|+++++|+|+ |. T Consensus 37 ~~pfyv~d~~~i~~~~~~~~~~~--p~v~~~YAvKaN~~~~il~~l~~~G~G~DvaS~~El~~al~~G~~~~~Iif~gp~ 114 (448) T 3btn_A 37 KNAFFVGDLGKIVKKHSQWQTVV--AQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPC 114 (448) T ss_dssp CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEESSHHHHHHHHHTTCCGGGEEECCSS T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC T ss_conf 99779905999999999999878--9986887733489899999999819939997999999999869690029990898 Q ss_pred CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------ Q ss_conf 78034788613886-89856720599999986123456148996357744310124557864357427888874------ Q gi|254780741|r 81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------ 153 (367) Q Consensus 81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------ 153 (367) |++++|+.|++.|. ++++||++||++|.+.++ +.++.+||+|+... .++...||||++.+++.+. T Consensus 115 Ks~~~l~~A~~~Gv~~~~~Ds~~eL~~i~~~~~--~~~v~~rI~~~~~~------~~~~~~sKFGi~~~~~~~~~~~~k~ 186 (448) T 3btn_A 115 KQVSQIKYAAKVGVNIMTCDNEIELKKIARNHP--NAKVLLHIATEDNI------GGEDGNMKFGTTLKNCRHLLECAKE 186 (448) T ss_dssp CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCT--TCEEEEEBCCCC--------------CCCCBCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC--CCCCEEEECCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHC T ss_conf 999999999986997599899999999998623--58801211244433------3222466668777899988777622 Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC----- Q ss_conf 3149606653056566614789999999998---98650887508753377666445568078999999875421----- Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY----- 225 (367) Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~----- 225 (367) ...++.|+|||+|||+.+.+.|.++++.+.+ .+.+++..+++|||||||++++.+ .+.+++.++...+++ T Consensus 187 ~~l~l~Glh~H~GS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~~~~~~--~~~~~~~i~~~~~~~~~~~~ 264 (448) T 3btn_A 187 LDVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTEIQ--LEEVNHVISPLLDIYFPEGS 264 (448) T ss_dssp HTCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCSCHHH--HHHHHHHHHHHHHHHSCTTS T ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--HHHHHHHHHHHHHHHHHHCC T ss_conf 8817856455413654654879999999999999999829953676215766656676--56688999887765332058 Q ss_pred CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCC-CCCCC------CCCCCCCCCCCCC----------CCCC----C Q ss_conf 65045300220145741888788786304-433343-33356------5656640013455----------3000----2 Q gi|254780741|r 226 SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVI-VDSSV------EAHVPDYLLYQES----------ATIY----P 283 (367) Q Consensus 226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~-vd~g~------~~~~~~~~~~~~~----------~~~~----~ 283 (367) ++++++|||||+|++||+++|+|+++|+. ++++.+ ++.+. ..++++.++..++ +... . T Consensus 265 ~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (448) T 3btn_A 265 GIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKE 344 (448) T ss_dssp CCEEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEEEEESCCTTTTTGGGGC----CCCEECCC--- T ss_pred CCEEEECCCCCEECCEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCC T ss_conf 97699679862330518999999999972786247874046665621025436144302466654225640120356666 Q ss_pred CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHH Q ss_conf 478645998623336664552135667788798999968870223243476899887799996799099997-3898999 Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDY 362 (367) Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~ 362 (367) ++...+++|+||+|+++|+|+++..+|++++||+|+|.|+||||++|+|+||++|+|++|++.+++.+.++| ||++.|. T Consensus 345 ~~~~~~~~v~Gp~C~~~D~l~~~~~LP~l~~GD~L~~~~~GAY~~~~~s~fN~~~~P~~~~v~~~~~~~~ir~~~~~~d~ 424 (448) T 3btn_A 345 DEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDWYEMQDAGITSDA 424 (448) T ss_dssp --CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCCGGGTTCCCEEEEEEEHHHHHHHHHTTGGGSG T ss_pred CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHH T ss_conf 78757899993077888888806588899999999997987471866587789999818999938847898727955788 Q ss_pred HHH Q ss_conf 874 Q gi|254780741|r 363 YNN 365 (367) Q Consensus 363 ~~~ 365 (367) +.+ T Consensus 425 ~~~ 427 (448) T 3btn_A 425 MMK 427 (448) T ss_dssp GGT T ss_pred HHH T ss_conf 960 No 15 >2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A* Probab=100.00 E-value=0 Score=525.57 Aligned_cols=335 Identities=16% Similarity=0.185 Sum_probs=279.2 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC Q ss_conf 88568977999999999999985336986999541059999999998518748980799998987-36880108853-77 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~ 80 (367) +|||||||++.|++|++++++++ ++++++||+||||++.|++++.+.|+|+||+|.+|+++|+ +|+++++|+|+ |. T Consensus 54 GTP~yV~d~~~l~~n~~~l~~af--~~~~i~YAvKAN~~~~il~~l~~~G~g~dv~S~~El~~al~aG~~~~~Ii~~gp~ 131 (419) T 2plj_A 54 GAPLLLLDCDVIRQQYRALKNAL--PNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVPADLTIHTHPI 131 (419) T ss_dssp CSSEEEEEHHHHHHHHHHHHHHS--TTEEEEEESTTCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCC T ss_conf 99889988999999999999868--9988999973288699999999839958997999999999759691328989998 Q ss_pred CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------ Q ss_conf 78034788613886-89856720599999986123456148996357744310124557864357427888874------ Q gi|254780741|r 81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------ 153 (367) Q Consensus 81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------ 153 (367) |+++||+.|++.+. .+++||++||+++..++++. ++.+|+++.... ..+...+|||++.++..+. T Consensus 132 Ks~eel~~Al~~gv~~~~vDs~~el~~l~~~a~~~--~~~iri~~~~~~------~~~~~~~kfG~~~~~~~~~~~~~~~ 203 (419) T 2plj_A 132 KRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDV--ELLVRLSFRNSE------AFADLSKKFGCSPEQALVIIETAKE 203 (419) T ss_dssp CCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTC--EEEEEBCC---------------CCCSCBCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCC--CCEEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 87476999997498467403287999998752013--420123114653------3333578777689999999999985 Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHC-- Q ss_conf 314960665305656661478999999999898----6508875087533776664455--68078999999875421-- Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF----GHFITQIEWISLGGGIHFTDKD--YPVKDFCQRLKEFSEKY-- 225 (367) Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~----~~~~~~l~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~-- 225 (367) ...++.|||||+|||+.+.+.|...++.+.+.+ ++.+..+++|||||||+++|.+ .+++.+++.+.+..+.. T Consensus 204 ~~l~l~GiH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idiGGG~~i~y~~~~~~~~~~~~~~~~~~~~~~~ 283 (419) T 2plj_A 204 WNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPE 283 (419) T ss_dssp TTCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCCSSSCCCCHHHHHHHHHHHHTTSCT T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 79957788886467767841257799999987642001024564257317987635655678989999988998764046 Q ss_pred CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCC--CCCCEEEEEECCCCCCCC Q ss_conf 65045300220145741888788786304-433343333565656640013455-30002--478645998623336664 Q gi|254780741|r 226 SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQES-ATIYP--NTGPYTAMVCGRSCLAGD 301 (367) Q Consensus 226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~-~~~~~--~~~~~~~~v~G~~C~~~D 301 (367) +++|++||||+++++||+++++|+++|+. +++|+++|+|++.++++.++...+ +.... .....++.|+||+|+++| T Consensus 284 ~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D 363 (419) T 2plj_A 284 TVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVD 363 (419) T ss_dssp TCEEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCCCCCEEESCCSSCEEEEEEECSSSCTTC T ss_pred CCCCCCCCHHHHHHCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEECCCCCCCEEEEEEECCCCCCCC T ss_conf 74421377265140243689999999963883478855751245673441366464463478886415999837978868 Q ss_pred EEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEEC Q ss_conf 5521356677887989999688702232434768998877999967 Q gi|254780741|r 302 IFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNV 347 (367) Q Consensus 302 ~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~ 347 (367) +|+++..+|++++||+|+|.|||||+++|+|+||++|+|++|++++ T Consensus 364 ~l~~~~~LP~l~~GD~l~~~~~GAY~~s~~s~fN~~p~p~~v~v~~ 409 (419) T 2plj_A 364 VIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE 409 (419) T ss_dssp EEEEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEECC T ss_pred EECCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEEC T ss_conf 8896628888999999998896633475627688999884899968 No 16 >2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Probab=100.00 E-value=0 Score=502.45 Aligned_cols=333 Identities=15% Similarity=0.169 Sum_probs=270.1 Q ss_pred CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC Q ss_conf 885689779999999999999853369869995410599999999985187489807999989873-6880108853-77 Q gi|254780741|r 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA 80 (367) Q Consensus 3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~ 80 (367) .|||||||++.|++|+++++.+| |+++++||+||||++.|++++++.|+|+||+|++|+++|++ ||++++|+|+ |. T Consensus 16 ~~~fyv~d~~~i~~~~~~~~~~~--p~v~~~YAvKaN~~~~vl~~l~~~G~G~dv~S~~El~~al~~G~~~~~Ii~~g~~ 93 (372) T 2nva_A 16 TKSFYVSSPKIVEDLIDQWTILF--PRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTM 93 (372) T ss_dssp CSEEEEECHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHTCCGGGEEECCSC T ss_pred CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHEEECCCC T ss_conf 98689972999999999999878--8986988851189899999999849849996999999999859791249994898 Q ss_pred CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH------H Q ss_conf 7803478861388-68985672059999998612345614899635774431012455786435742788887------4 Q gi|254780741|r 81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE------S 153 (367) Q Consensus 81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~------~ 153 (367) |+++||+.|++.+ .++++||++|++++.+++.+ .++.+|+++..... .+...++||++..++.+ . T Consensus 94 K~~~el~~ai~~gv~i~~~ds~~~~~~i~~~~~~--~~~~~~~~~~~~~~------~~~~~~~fg~~~~~~~~~~~~a~~ 165 (372) T 2nva_A 94 KTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPN--CKMILRIRCDDPNA------TVQLGNKFGANEDEIRHLLEYAKQ 165 (372) T ss_dssp CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTT--CEEEEEBCCCCTTC------SBCCTTTSSBCGGGHHHHHHHHHH T ss_pred CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC--CCCCEEEECCCCCC------CCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 9999999999859970026539999999875513--33210110156755------445688777771777999999985 Q ss_pred HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCCCCCH-HHHHH----HHHHHHHC Q ss_conf 3149606653056566614789999999998986---5088750875337766644556807-89999----99875421 Q gi|254780741|r 154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDKDYPVK-DFCQR----LKEFSEKY 225 (367) Q Consensus 154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~~~~~~-~~~~~----i~~~~~~~ 225 (367) ...++.|+|||+|||+.+.+.|.+.++.+.+++. +.+.++++|||||||++++.+.+.+ .+.+. ..+..... T Consensus 166 ~~l~~~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdiGGGf~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 245 (372) T 2nva_A 166 LDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPED 245 (372) T ss_dssp TTCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCCC---CCCHHHHHHHHHHHHHCCCT T ss_pred CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC T ss_conf 69818899986687658768999999987777766675079742899778867388887777459999876543024655 Q ss_pred CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC--CCCC---C-CCCCEEEEEECCCCC Q ss_conf 65045300220145741888788786304-433343333565656640013455--3000---2-478645998623336 Q gi|254780741|r 226 SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQES--ATIY---P-NTGPYTAMVCGRSCL 298 (367) Q Consensus 226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~--~~~~---~-~~~~~~~~v~G~~C~ 298 (367) +++|++||||+||++||+++|+|+++|++ +..++++|+|+++.+.+.+....+ +... + ++...+++|+||||+ T Consensus 246 ~~~l~~EPGR~lva~ag~llt~V~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~ 325 (372) T 2nva_A 246 TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTCD 325 (372) T ss_dssp TCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSC T ss_pred CCEEECCCCEEEECCEEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCC T ss_conf 53331377103514646999999999983782268840323575531121104564011036788787778999937988 Q ss_pred CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE Q ss_conf 66455213566778879899996887022324347689988779999 Q gi|254780741|r 299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK 345 (367) Q Consensus 299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~ 345 (367) ++|+|+++..+|++++||+|+|.||||||++|+|+||++|+|.++++ T Consensus 326 ~~D~l~~~~~lP~l~~GD~l~~~~~GAY~~s~~s~fN~~~~p~v~~~ 372 (372) T 2nva_A 326 GVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYYI 372 (372) T ss_dssp TTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEEC T ss_pred CCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC T ss_conf 47588866317999999999885945234845387889899817969 No 17 >3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Probab=100.00 E-value=0 Score=432.84 Aligned_cols=363 Identities=19% Similarity=0.224 Sum_probs=282.7 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH--------CCCEEEEEEECCCCHHHHHHHHHHC----CEEEEECHHHHHHHHC- Q ss_conf 88856897799999999999998533--------6986999541059999999998518----7489807999989873- Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN--------AGVKLLLALKCFAAWGMFDTLNQYM----DGTTSSSLYEVMLGHE- 68 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~--------~~~~i~yA~KaN~~~~il~~l~~~g----~g~dv~S~~E~~la~~- 68 (367) .+||+||+|++.|++|+++++.+|.. .+++.+||+||||++.|++.+...| +|+||+|.+|+.+|++ T Consensus 43 ~gtPl~v~~~dil~~ri~~l~~aF~~A~~~~~y~g~y~~~YAvKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~ 122 (619) T 3nzp_A 43 YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY 122 (619) T ss_dssp CCSCEEEECHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHH T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHC T ss_conf 99988997089999999999999999999808788818998862489999999999837425881899799999999967 Q ss_pred CCCCCCEEECCCCCHHHHHH-----HHCCCCEEEECCCHHHHHHHHHHHCC---CCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 68801088537778034788-----61388689856720599999986123---45614899635774431012455786 Q gi|254780741|r 69 KFGGETHAYNVAYKDCEIDA-----VLSNCDTIIFNTVSQLNKFKDKAQKL---HKKIGLRINPSVSYSKFILADPNRPF 140 (367) Q Consensus 69 g~~~~~i~~~~~~~~~el~~-----a~~~~~~i~iDs~~El~~i~~~a~~~---~~~I~lRinP~~~~~~~~~~~~~~~~ 140 (367) |+++++|++||.++++.++. .+..+.+|++||++||+++.+++++. ..+|++|+||.. .+++....+|+.. T Consensus 123 g~~~~~Ii~nG~kk~e~~~~a~l~~~l~~~v~ivvDs~~EL~~I~~~a~~~~~~~~~IglRi~~~~-~~~~~~~~tgg~~ 201 (619) T 3nzp_A 123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHS-AGVGIWAKSGGIN 201 (619) T ss_dssp SCTTSEEEECSCCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTSCSCCCEEEEEBCCTT-C------------ T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEECCCC-CCCCCCCCCCCCC T ss_conf 989897998997885999999998611888488879999999999999985499876521323675-5667422468875 Q ss_pred CCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCCC- Q ss_conf 43574278888743--------14960665305656661478999999999898650----887508753377666445- Q gi|254780741|r 141 SRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----ITQIEWISLGGGIHFTDK- 207 (367) Q Consensus 141 skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~~~l~~idiGGG~~~~~~- 207 (367) ||||++..++.+.. ..++.|+|||+|||+.+.+.|+++++.+.+++.++ ++++++|||||||+++|. T Consensus 202 SKFGl~~~ei~~~i~~l~~~~~l~~l~GlHfHiGSQi~d~~~~~~al~~~~~l~~el~~~g~~~l~~LDIGGGlgV~Y~~ 281 (619) T 3nzp_A 202 SKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ 281 (619) T ss_dssp -CCSBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHHTTCTTCCEEEEESCBCCCCCC T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC T ss_conf 65786378899999999865776706899982587756489999999999999999887489776187504876757864 Q ss_pred -------CCCCHHHHHH----HHHHHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCC Q ss_conf -------5680789999----99875421---65045300220145741888788786304-433343333565656640 Q gi|254780741|r 208 -------DYPVKDFCQR----LKEFSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDY 272 (367) Q Consensus 208 -------~~~~~~~~~~----i~~~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~ 272 (367) +++++++++. ++++++++ +++|++||||||||+||++|++|+++|++ +.+++++|+|++++++|. T Consensus 282 ~~~~~s~~y~l~eya~~Iv~~~~~~~~~~~~~~p~Ii~EPGRalVA~agvLVt~Vi~vK~~~~~~~~~vd~g~~~~lrp~ 361 (619) T 3nzp_A 282 FKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDE 361 (619) T ss_dssp SSSCCSCSSCHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCHHHHGGGEEEEEEEEEEECCCCCGGGSCCCSSCCHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCEEEEEEEEEEEECCCCCEEEECCCCCCHHHHH T ss_conf 22234454329999999999999999980899973999257888630428999999997248875246327777167799 Q ss_pred CCCCCCC------------------------------------------------------------------------- Q ss_conf 0134553------------------------------------------------------------------------- Q gi|254780741|r 273 LLYQESA------------------------------------------------------------------------- 279 (367) Q Consensus 273 ~~~~~~~------------------------------------------------------------------------- 279 (367) ++..++. T Consensus 362 Ly~~~h~i~~~~~~E~~~da~~~~~~~~~~f~~g~l~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~ 441 (619) T 3nzp_A 362 LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYL 441 (619) T ss_dssp HHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC-------------CCSBEEE T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHE T ss_conf 99988734866147899999999999999996488789999999999999999998750356793777777777776624 Q ss_pred -------------------CCCC----C-CCCEEEEEECCCCCCCCEEEEC----CCCCCCCCCC---EEEEECCCCHHH Q ss_conf -------------------0002----4-7864599862333666455213----5667788798---999968870223 Q gi|254780741|r 280 -------------------TIYP----N-TGPYTAMVCGRSCLAGDIFGEF----HFEKPVKIGD---RISFEDVAGYNI 328 (367) Q Consensus 280 -------------------~~~~----~-~~~~~~~v~G~~C~~~D~l~~~----~~~~~l~~GD---~l~i~~~GAY~~ 328 (367) .++| + +......+++-||+|.+.+-.. ..++++..++ +|.|..+|||+. T Consensus 442 ~NfS~fqslpD~Wai~Q~fpi~Pi~rl~e~p~~~~~l~diTCDSDg~i~~~~~~~l~lh~~~~~~e~y~lg~Fl~GAYQe 521 (619) T 3nzp_A 442 VNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQE 521 (619) T ss_dssp ESSCTTTTCHHHHHSSCCCCEEESSCTTSCCCCBBCCEESCSCTTSBCCCCSSSCCBCCCCCTTTSCCEEEECSCSSSTT T ss_pred ECHHHHCCCCCHHHHCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHH T ss_conf 12034305740565446442624523688863479981577389996444566775578878899860899984448679 Q ss_pred HHCCCCCCCCCCEEEEE--ECCCCEEEE---EECCHHHHHHHC Q ss_conf 24347689988779999--679909999---738989998742 Q gi|254780741|r 329 NRKNWFNGINMPTIAVK--NVDGTIKAI---REFSYNDYYNNL 366 (367) Q Consensus 329 ~~~~~Fn~~~~P~~v~~--~~~g~~~~~---r~e~~~d~~~~~ 366 (367) .|+...|-++.|.+|.+ +++| ..+. +.+|.+|+++-+ T Consensus 522 ~lg~~HnLfg~~~~v~v~~~~~g-~~~~~~~~g~~~~~vl~~~ 563 (619) T 3nzp_A 522 VLGMKHNLFTHPTEAIISINEKG-YEVEGIIEAQSILDTLEDL 563 (619) T ss_dssp TTCCCTTSCCCCEEEEEEECSSC-EEEEEEECCCCHHHHHHHT T ss_pred HHHHCCCCCCCCCEEEEEECCCC-CEEEEEECCCCHHHHHHHC T ss_conf 87435366899988999977997-4898852688899999873 No 18 >3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.10A {Escherichia coli} Probab=100.00 E-value=0 Score=409.10 Aligned_cols=364 Identities=14% Similarity=0.122 Sum_probs=277.6 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH-------C-CCEEEEEEECCCCHHHHHHHHHHC--CEEEEECHHHHHHHHC-CC Q ss_conf 88856897799999999999998533-------6-986999541059999999998518--7489807999989873-68 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN-------A-GVKLLLALKCFAAWGMFDTLNQYM--DGTTSSSLYEVMLGHE-KF 70 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~-------~-~~~i~yA~KaN~~~~il~~l~~~g--~g~dv~S~~E~~la~~-g~ 70 (367) ++||++|++++.|+++++++..+|.. + .++++||+||||++.|++.+.+.| +|+||+|.+|+.+|++ ++ T Consensus 84 ~~~P~~irf~diL~~rir~l~~aF~~Ai~~~~Y~g~y~~~YAvKAN~~~~VL~~l~~~G~~~GlDvaS~gEL~~AL~~g~ 163 (666) T 3nzq_A 84 QRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAG 163 (666) T ss_dssp CCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHT T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCC T ss_conf 99998996479999999999999999999809998779999964589899999999859980189818999999997289 Q ss_pred CCCCEEE-CCCCCHHHHHHHHC-----CCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCC Q ss_conf 8010885-37778034788613-----8868985672059999998612345--61489963577443101245578643 Q gi|254780741|r 71 GGETHAY-NVAYKDCEIDAVLS-----NCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSR 142 (367) Q Consensus 71 ~~~~i~~-~~~~~~~el~~a~~-----~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~sk 142 (367) ++++|+| ||.|++++++.|+. ....+++||++||+++.+.+++.+. +|++|+||.. .+.+....+|+..|| T Consensus 164 ~p~~II~~n~~K~~e~I~~Al~~~~~~~~v~iviDsl~EL~~I~~~a~~l~v~~rIglRi~l~~-~~~~~~~~Tgg~~SK 242 (666) T 3nzq_A 164 MTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLAS-QGSGKWQSSGGEKSK 242 (666) T ss_dssp TSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTCCCCEEEEBCCSS-SCSSTTCSSSSSCCC T ss_pred CCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCCCCCCCCCC T ss_conf 9871998899779899999998288771013441889999999999997298861677614665-677776555887677 Q ss_pred CCCCHHHHHHHH-------H-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCC--- Q ss_conf 574278888743-------1-49606653056566614789999999998986---508875087533776664455--- Q gi|254780741|r 143 LGEKCKDKIESE-------I-KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDKD--- 208 (367) Q Consensus 143 fG~~~~~~~~~~-------~-~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~~--- 208 (367) ||++.+++.+.. . ..+.|+|||+|||+.+...|.++++.+.+++. +.+..+++|||||||+++|.+ T Consensus 243 FGi~~~ei~~~i~~lk~~~~l~~L~GLHfHIGSQi~d~~~~~~al~~~~~l~~el~~~G~~l~~IDIGGGfgV~Y~~~~~ 322 (666) T 3nzq_A 243 FGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRS 322 (666) T ss_dssp SCBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCCCCEEECCSCCCCCSSSSCS T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC T ss_conf 87788999999999986587775468998668764426999999999999999986539775288617745646676444 Q ss_pred -------CCCHHHHHH----HHHHHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECCC-CCCCCCCCCCCCC----- Q ss_conf -------680789999----99875421---650453002201457418887887863044-3334333356565----- Q gi|254780741|r 209 -------YPVKDFCQR----LKEFSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAH----- 268 (367) Q Consensus 209 -------~~~~~~~~~----i~~~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~-~~~v~vd~g~~~~----- 268 (367) ++++++++. +++.++++ +++|++||||||||+||++|++|+++|++. ......+..++.. T Consensus 323 ~~~~s~ny~leeya~~Iv~~l~~~~~~~~v~~p~Li~EPGRaLVA~agvLVt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~ 402 (666) T 3nzq_A 323 QSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMW 402 (666) T ss_dssp SSTTCCSSCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHTTSEEEEEEEEEEECCCCCCCCCCCTTSCHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHH T ss_conf 33210343399999999999999999639999869987877775212589999999723788888888543647789999 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780741|r 269 -------------------------------------------------------------------------------- 268 (367) Q Consensus 269 -------------------------------------------------------------------------------- 268 (367) T Consensus 403 ~~~~~i~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 482 (666) T 3nzq_A 403 ETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQERMA 482 (666) T ss_dssp HHHHHHSSSSCSTTHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCTTSGGGHHHHHHHHHTTC T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999765404304899999999999999998744866489999999999999999998742112458588999998765 Q ss_pred ------------CCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCEEE---E------CCCCCCCCCCC--EEEE Q ss_conf ------------664001-3455300----02478645998623336664552---1------35667788798--9999 Q gi|254780741|r 269 ------------VPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDIFG---E------FHFEKPVKIGD--RISF 320 (367) Q Consensus 269 ------------~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~l~---~------~~~~~~l~~GD--~l~i 320 (367) +|+.|- .+..|++ +..+......+++-||+|.+.+- . ...+++++.|+ +|.| T Consensus 483 ~~y~~NfS~fqslPD~WaI~Q~Fpi~Pi~rl~e~p~~~~~l~diTCDSDG~i~~f~~~~~~~~~l~lh~~~~~e~yylg~ 562 (666) T 3nzq_A 483 DKMYVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGF 562 (666) T ss_dssp EEEEESSCHHHHCTHHHHSCCCCCEEESSCTTSCCCEEEEEEESCSSTTCBCCCEEETTEEESSEEECSCCTTSCCEEEE T ss_pred HHEEEEHHHHCCCCHHHHHCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEE T ss_conf 66155025630474066544545162243448986257899445648999720111776665775688789899767999 Q ss_pred ECCCCHHHHHCCCCCCCCCCEEEE--EECCCCEEEE---EECCHHHHHHHC Q ss_conf 688702232434768998877999--9679909999---738989998742 Q gi|254780741|r 321 EDVAGYNINRKNWFNGINMPTIAV--KNVDGTIKAI---REFSYNDYYNNL 366 (367) Q Consensus 321 ~~~GAY~~~~~~~Fn~~~~P~~v~--~~~~g~~~~~---r~e~~~d~~~~~ 366 (367) ..+|||+.+|+...|-++.|.+|. .++||.+.+. +..|.+|+++-+ T Consensus 563 Fl~GAYQe~lG~~HNLfg~~~~v~v~~~~~g~~~~~~~~~g~t~~~vL~~v 613 (666) T 3nzq_A 563 FMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYV 613 (666) T ss_dssp CSCCSSCGGGCCCTTSCCCCEEEEEEECTTSCEEEEEEECCCBHHHHHHHT T ss_pred EECCHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHC T ss_conf 863473687710535789997799998699988999963689899999874 No 19 >3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Probab=100.00 E-value=0 Score=401.35 Aligned_cols=364 Identities=14% Similarity=0.123 Sum_probs=272.4 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHH-------C-CCEEEEEEECCCCHHHHHHHHHH-------CCEEEEECHHHHHHH Q ss_conf 88856897799999999999998533-------6-98699954105999999999851-------874898079999898 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKN-------A-GVKLLLALKCFAAWGMFDTLNQY-------MDGTTSSSLYEVMLG 66 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~-------~-~~~i~yA~KaN~~~~il~~l~~~-------g~g~dv~S~~E~~la 66 (367) ++||++|++++.|+++++++..+|.. + ..+.+||+||||++.|++.+.+. +.|+||+|.+|+.+| T Consensus 62 ~~~P~lirf~diL~~ri~~l~~aF~~Ai~~~~Y~g~y~~~YavKaN~~~~Vle~l~~~G~~~e~~~~GlDv~S~~EL~~a 141 (648) T 3n2o_A 62 LNVPVLVRFPQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAV 141 (648) T ss_dssp CCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCSSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHH T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHH T ss_conf 99988996449999999999999999999739998637998873579999999999759974345664287489999999 Q ss_pred HC-CCCCCCEEEC-CCCCHHHHHHHHC-----CCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCC Q ss_conf 73-6880108853-7778034788613-----8868985672059999998612345--614899635774431012455 Q gi|254780741|r 67 HE-KFGGETHAYN-VAYKDCEIDAVLS-----NCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPN 137 (367) Q Consensus 67 ~~-g~~~~~i~~~-~~~~~~el~~a~~-----~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~ 137 (367) ++ |+++++|+|+ |.|++++++.|+. .+..+++||++||++|.+++++.+. +|++||||.....++ ...+| T Consensus 142 L~~g~~~~~II~~n~~K~~e~I~~Al~~~~~~~~viiviDs~~EL~~I~~ia~~~~~~~~IglRIn~~~~~~~~-~~~tg 220 (648) T 3n2o_A 142 LAMAQHASSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRLASQGAGK-WQASG 220 (648) T ss_dssp HHHTSSSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTCCCEEEEEBCCSTTSTTT-TCSSS T ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-CCCCC T ss_conf 96599976178789969999999999808876572787489999999999999709985599998568667887-52337 Q ss_pred CCCCCCCCCHHHHHHHHH--------CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCC Q ss_conf 786435742788887431--------49606653056566614789999999998986---5088750875337766644 Q gi|254780741|r 138 RPFSRLGEKCKDKIESEI--------KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTD 206 (367) Q Consensus 138 ~~~skfG~~~~~~~~~~~--------~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~ 206 (367) +..||||++.+++.+... ..+.|+|||+|||+.+...|+++++.+.+++. +.+..+++|||||||+++| T Consensus 221 g~~SKFGl~~~ei~~~l~~l~~~~~l~~l~gLHfHiGSQI~d~~~~~~al~e~~~l~~eL~k~G~~l~~IDIGGGlgV~Y 300 (648) T 3n2o_A 221 GEKSKFGLSASQVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDY 300 (648) T ss_dssp SCCCCCCBCHHHHHHHHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCBCCCT T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC T ss_conf 87677799989999999997655665504579997587523289999999999999999996199986898688546567 Q ss_pred CC----------CCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCC---------- Q ss_conf 55----------68078999----9998754216---504530022014574188878878630443334---------- Q gi|254780741|r 207 KD----------YPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIKNLV---------- 259 (367) Q Consensus 207 ~~----------~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v---------- 259 (367) .+ ++++++++ .+++.+++++ ++|++||||||||+||++|++|+++|+.....+ T Consensus 301 ~~~~~~~~~s~~y~~eeya~~Iv~~i~~~~~~~~~~~p~Ii~EpGRalVA~agvLVt~VidvK~~~~~~~~~~~~~~~~~ 380 (648) T 3n2o_A 301 DGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISNVIGTETYKPETVTEPEEDFPLL 380 (648) T ss_dssp TSCCCSSTTSCSCCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHGGGEEEEEEEEEEECCCCCCCCCCCTTCCHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCHHH T ss_conf 65456676310356999999999999999997299998799937789955875378998886226866678665542056 Q ss_pred -------------------------------------------------------------------------------- Q ss_conf -------------------------------------------------------------------------------- Q gi|254780741|r 260 -------------------------------------------------------------------------------- 259 (367) Q Consensus 260 -------------------------------------------------------------------------------- 259 (367) T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~l~l~~ra~~e~~~~~i~~~~~~~~~~~~~~~~~~~~~l 460 (648) T 3n2o_A 381 LNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDEL 460 (648) T ss_dssp HHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 89999999998632557789999999999999999986148878899999999999999999998653034681889999 Q ss_pred --------CCCCCCCCCCCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCEE---EE------CCCCCCCCCC-- Q ss_conf --------333356565664001-3455300----0247864599862333666455---21------3566778879-- Q gi|254780741|r 260 --------IVDSSVEAHVPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDIF---GE------FHFEKPVKIG-- 315 (367) Q Consensus 260 --------~vd~g~~~~~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~l---~~------~~~~~~l~~G-- 315 (367) .++-|+..-+|+.|- .+..|++ +.........+++-||+|.+.+ .. ...+++++.| T Consensus 461 ~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~p~~~~~l~diTCDSDG~i~~fi~~~~~~~~l~lh~~~~~e~ 540 (648) T 3n2o_A 461 SERLADKFFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEP 540 (648) T ss_dssp HHHTCEEEEESSCHHHHCHHHHHHCCCCCEEESSCGGGTTSEEEEEEESSSCTTCBCCCEEETTEEESSEEECCCCTTSC T ss_pred HHHHHHHHCCCHHHHHCCCHHHHHCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 98876787014023200752776555462230423688760489974577179997002458776645757888899997 Q ss_pred CEEEEECCCCHHHHHCCCCCCCCCCEEEEE--ECCCCEEEE---EECCHHHHHHHC Q ss_conf 899996887022324347689988779999--679909999---738989998742 Q gi|254780741|r 316 DRISFEDVAGYNINRKNWFNGINMPTIAVK--NVDGTIKAI---REFSYNDYYNNL 366 (367) Q Consensus 316 D~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~--~~~g~~~~~---r~e~~~d~~~~~ 366 (367) =+|.|..+|||+-+++..-|-++.|.+|.+ ++||.+.+. +..|.+|+++-+ T Consensus 541 yylG~Fl~GAYQe~lG~~HnLfg~~~~v~v~~~~~g~~~~~~~~~g~t~~~vL~~v 596 (648) T 3n2o_A 541 YLMGFFLVGAYQEILGDMHNLFGDTHSVVVNVGDQGEINIDFINEGDTVEDMMRYV 596 (648) T ss_dssp CEEEEESCCSSHHHHCCCGGGCCCCEEEEEEECTTSCEEEEEEECCCBHHHHHHHT T ss_pred CEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHC T ss_conf 77999853572687622533589998799998799988999852689899999873 No 20 >3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Probab=99.85 E-value=6.4e-17 Score=129.64 Aligned_cols=317 Identities=16% Similarity=0.112 Sum_probs=185.0 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHHHH-CCCCCCCEEECC Q ss_conf 8885689779999999999999853369869995410599999999985187-48980799998987-368801088537 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVMLGH-EKFGGETHAYNV 79 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~la~-~g~~~~~i~~~~ 79 (367) |+||+.|+|++.|++|++.++......++++.--+||+..+.|++.+-+.|. |+.|+++.|++..+ +|+. ..++.+| T Consensus 44 l~tP~lvid~~~l~~Ni~~m~~~~~~~gv~lrph~Kth~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~Gi~-~illa~~ 122 (426) T 3gwq_A 44 VSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVS-RVLMANQ 122 (426) T ss_dssp BCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCC-EEEECSC T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC-CEEEECC T ss_conf 899739984999999999999988756974999811146499999999779987998609999999976999-8799467 Q ss_pred CCCHHHHHHH---HCC---CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHH- Q ss_conf 7780347886---138---8689856720599999986123456148996357744310124557864357427-8888- Q gi|254780741|r 80 AYKDCEIDAV---LSN---CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KDKI- 151 (367) Q Consensus 80 ~~~~~el~~a---~~~---~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~~~- 151 (367) ...++.++.+ ... ...+.+||.++++.+.+.+++.+.++.+.|..+.+ .+|.|+.. ++.. T Consensus 123 ~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDtG------------~~R~G~~~~e~~~~ 190 (426) T 3gwq_A 123 LVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP------------GGRTGVRDAAQRNA 190 (426) T ss_dssp CCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT------------TSSSSBCSHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCCC------------CCCCCCCCHHHHHH T ss_conf 789799999999863557405999878999999999887568068987650567------------76566666589999 Q ss_pred --HHH-----HCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf --743-----14960665305656661478----999999999898650--88750875337766644556807899999 Q gi|254780741|r 152 --ESE-----IKNVNGLMFHNNCENKSFLC----FSAMLKNIEKEFGHF--ITQIEWISLGGGIHFTDKDYPVKDFCQRL 218 (367) Q Consensus 152 --~~~-----~~~i~Gih~H~gs~~~~~~~----~~~~l~~~~~~~~~~--~~~l~~idiGGG~~~~~~~~~~~~~~~~i 218 (367) +.. ...+.|++.|.|+.. +... .++....+.++.++. ......+.-||..+ ....++.+ T Consensus 191 l~~~i~~~~~~l~l~Gi~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~-------~~~~~~~~ 262 (426) T 3gwq_A 191 VLEAITRYPDTLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW-------YDVVAEEF 262 (426) T ss_dssp HHHHHHTSTTTEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT-------HHHHHHHT T ss_pred HHHHHHHCCCCCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC-------HHHHCCCC T ss_conf 9999985778865669985153347-734399999999999999999853278870464468854-------01003310 Q ss_pred HHHHHHCCCEEEEEHHHHCCC---------------------------CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 987542165045300220145---------------------------74188878878630443334333356565664 Q gi|254780741|r 219 KEFSEKYSVQIYLEPGEAIVT---------------------------NTTTLNTTVLDISENIKNLVIVDSSVEAHVPD 271 (367) Q Consensus 219 ~~~~~~~~~~l~iEPGR~lv~---------------------------~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~ 271 (367) ............+.||.|+.. .+...+++|..+++ ..++++|.|......+ T Consensus 263 ~~~~~~~~~~~~vrpG~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~~--~~~~~v~~G~~~~~~d 340 (426) T 3gwq_A 263 VKASETGKVEVVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIPE--PDRAIIGLGKRDSAFD 340 (426) T ss_dssp HHHHHSSSEEEEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEEE--TTEEEESCCTTTSCGG T ss_pred CCCCCCCCCEEEECCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEECCCCEEEEEC T ss_conf 02556764026973447997046311102332001351002333123201688778976556--8759981654687504 Q ss_pred CCCCCCCCCCC--CC------CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE Q ss_conf 00134553000--24------78645998623336664552135667788798999968870223243476899887799 Q gi|254780741|r 272 YLLYQESATIY--PN------TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA 343 (367) Q Consensus 272 ~~~~~~~~~~~--~~------~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v 343 (367) ... ++..... .. .....+.|.| |...-.+.+....+++++||.|.|..-=+ | ..||.+ +..+ T Consensus 341 ~g~-~~~~~~~~~g~~~~~~~~~~~~~~i~g--~~dqH~~i~~~~~~~l~vGD~V~~~p~H~-c----~t~~~~--~~~~ 410 (426) T 3gwq_A 341 AGM-PEPARHYRPGNEAPRDIAASEGWEIFG--LMDQHAYLRIPAGADLKVGDMIAFDISHP-C----LTFDKW--RQVL 410 (426) T ss_dssp GCC-CEEEEEECTTSSSCEECCGGGCCEEEE--ECSSCEEEECCTTCSCCTTCEEEEECSSG-G----GGGGGC--SEEE T ss_pred CCC-CCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCCEEEECCCCCCCCCCCEEEEECCCC-C----CCHHHC--CEEE T ss_conf 677-756210235666763013799827989--84772089878999899999999982878-8----155519--8899 Q ss_pred EEECCCCE Q ss_conf 99679909 Q gi|254780741|r 344 VKNVDGTI 351 (367) Q Consensus 344 ~~~~~g~~ 351 (367) ++++++.+ T Consensus 411 ~vd~~~~v 418 (426) T 3gwq_A 411 VVDPAYRV 418 (426) T ss_dssp EECTTSBE T ss_pred EEECCCEE T ss_conf 99799969 No 21 >3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Probab=99.74 E-value=7.7e-15 Score=115.95 Aligned_cols=311 Identities=18% Similarity=0.111 Sum_probs=180.7 Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHHHH-CCCCCCCEEECC Q ss_conf 8885689779999999999999853369869995410599999999985187-48980799998987-368801088537 Q gi|254780741|r 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVMLGH-EKFGGETHAYNV 79 (367) Q Consensus 2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~la~-~g~~~~~i~~~~ 79 (367) ++||++++|++.|++|++.++......++++...+||+..+.|++.+.+.|. ++.|+++.|++..+ .|++.-.+.+.. T Consensus 12 ~dTP~lviDl~~l~~N~~~~~~~~~~~~~~l~~~vK~h~~~~ia~~l~~~G~~~~~va~~~Ea~~l~~~g~~~~l~~~~~ 91 (376) T 3llx_A 12 PDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLYAVGI 91 (376) T ss_dssp SCSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEEEEEEC T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCEEEECCC T ss_conf 79966998699999999999986535598399996413799999999978999899805999999996799866981467 Q ss_pred CC-CHHHHHHHHCCC--CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-----HH Q ss_conf 77-803478861388--68985672059999998612345614899635774431012455786435742788-----88 Q gi|254780741|r 80 AY-KDCEIDAVLSNC--DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD-----KI 151 (367) Q Consensus 80 ~~-~~~el~~a~~~~--~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~-----~~ 151 (367) .. +..++.++.... ..+.+||.+.++.+.+.+++.+.++.+.|..+.+ ..|.|+..++ +. T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~vds~~~~~~l~~~a~~~~~~~~v~l~iD~G------------~~R~G~~~~~~~~~~~~ 159 (376) T 3llx_A 92 APAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSD------------DHRGGIKPSDSKLLTIA 159 (376) T ss_dssp CGGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS------------SSSSCBCTTCTHHHHHH T ss_pred CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECC------------CCCCCCCHHHHHHHHHC T ss_conf 805679999987348748999777999999999998749825899875058------------87577890599999730 Q ss_pred HHHHCCCEEEEECCCCC--CCCHHH----HH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CC-CCHHHHHHHHH Q ss_conf 74314960665305656--661478----99---9999999898650887508753377666445-56-80789999998 Q gi|254780741|r 152 ESEIKNVNGLMFHNNCE--NKSFLC----FS---AMLKNIEKEFGHFITQIEWISLGGGIHFTDK-DY-PVKDFCQRLKE 220 (367) Q Consensus 152 ~~~~~~i~Gih~H~gs~--~~~~~~----~~---~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~-~~-~~~~~~~~i~~ 220 (367) +....++.|++.|-|.. ..+.+. .. +.+..+.+.+.+.+..+.+++.||....... +. .+. T Consensus 160 ~~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~g~t~~~~~~~~~~~i~-------- 231 (376) T 3llx_A 160 KTLGEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDIS-------- 231 (376) T ss_dssp HHHGGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCSCCTTCS-------- T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCCCCCCE-------- T ss_conf 121100033102333124569878999999999999999875576449985189817970465640378853-------- Q ss_pred HHHHCCCEEEEEHHHHCC--------------CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCC----CCCC Q ss_conf 754216504530022014--------------574188878878630443334333356565664001-345----5300 Q gi|254780741|r 221 FSEKYSVQIYLEPGEAIV--------------TNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLL-YQE----SATI 281 (367) Q Consensus 221 ~~~~~~~~l~iEPGR~lv--------------~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~-~~~----~~~~ 281 (367) .+.||.|+. ..+...+++|+.++. ..+++++|+|......+... ... +... T Consensus 232 ---------~lr~G~~~~~d~~~~~~~~~~~~~~a~~v~~~vv~~~~-~~~~~~~~~G~~a~~~d~g~~~~~~~~~~g~~ 301 (376) T 3llx_A 232 ---------EVRAGVYTTFDLVMKNIGVCDFSHIAMSVVTTVIGHNK-EKNWLLTDSGWMALSRDSGTAGQNRDFGYGQV 301 (376) T ss_dssp ---------EECCCGGGTCCHHHHHHTSCCGGGCCEEEEEEEEEEET-TTTEEEESCCHHHHCSCCGGGGSSSCCBTCEE T ss_pred ---------EECCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEEECC-CCCEEEECCCCEEEECCCCCCCCCEECCCCCC T ss_conf ---------75654402368666324658612111389999995237-88767743653010024677666400126722 Q ss_pred CCCCCC-EEEEEECCCCCCCCEEEE-C-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC Q ss_conf 024786-459986233366645521-3-5667788798999968870223243476899887799996799 Q gi|254780741|r 282 YPNTGP-YTAMVCGRSCLAGDIFGE-F-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG 349 (367) Q Consensus 282 ~~~~~~-~~~~v~G~~C~~~D~l~~-~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g 349 (367) .+..+. .+....+.+++++=++-- + ...+++++||.|.|...=+ |. .+|.+ +..++++++. T Consensus 302 ~~~~g~~~~~~~~~~~s~EH~iv~~~~~~~~~~l~VGD~v~l~p~H~-c~----t~~~~--~~~~vv~~~~ 365 (376) T 3llx_A 302 CKIDGSVLDGLCVNSTSQEHGVIELSDAYQLEDFPVGHQLRIMPNHA-CA----TAAMH--PVYHVLMSDG 365 (376) T ss_dssp ECTTSCEEEEEEBCEECSSCEEEECCTTCCGGGSCTTCEEEEECSCH-HH----HHTTC--SEEEEECTTS T ss_pred CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCEEEEECCCC-CH----HHHCC--CEEEEEECCE T ss_conf 36778878982894104764279778987667899998999974863-75----67708--8799999998 No 22 >1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Probab=99.59 E-value=1.6e-11 Score=94.05 Aligned_cols=292 Identities=13% Similarity=0.091 Sum_probs=167.7 Q ss_pred CCCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCE Q ss_conf 88568-97799999999999998533698699954105----9999999998518-7489807999989873-6880108 Q gi|254780741|r 3 KTPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETH 75 (367) Q Consensus 3 ~TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i 75 (367) +++.| -.|.+.|+.|++.+++.. ++.+++--+||| -...|.+.+.+.| .+|-|+++.|+...++ |.....+ T Consensus 5 ~~r~w~EIdl~ai~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~il 82 (386) T 1vfs_A 5 PTRVYAEIDLDAVRANVRALRARA--PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIM 82 (386) T ss_dssp CSSEEEEEEHHHHHHHHHHHHTTS--TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEE T ss_pred CCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE T ss_conf 871799986999999999999768--998399999250463879999999998698999981399999999718999858 Q ss_pred EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 853777803478861388689856720599999986123456--148996357744310124557864357427888874 Q gi|254780741|r 76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES 153 (367) Q Consensus 76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~ 153 (367) ++++. .++++..+.+....+++.|..+++.+.+.++..+.+ |-|.|+ || .+|+|+..+++.+. T Consensus 83 il~~~-~~~~~~~~~~~~~~~~i~s~~~l~~~~~~a~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~ 147 (386) T 1vfs_A 83 CWLWT-PGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKAD------------TG--LGRNGCQPADWAEL 147 (386) T ss_dssp ECCCC-TTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBC------------SS--CCSSSBCHHHHHHH T ss_pred EEECC-CCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEC------------CC--CCCCCCCHHHHHHH T ss_conf 99448-70589999860731354759999999999986499824999951------------67--78678583788999 Q ss_pred H----------HCCCEEEEECCCCCC-CCHHHHHHHHHHHH---HHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHH Q ss_conf 3----------149606653056566-61478999999999---89865088750875337766---6445568078999 Q gi|254780741|r 154 E----------IKNVNGLMFHNNCEN-KSFLCFSAMLKNIE---KEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQ 216 (367) Q Consensus 154 ~----------~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~---~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~ 216 (367) . ...+.|+..|..+.. .+.+.....++... +.+.+.+....++.++..-+ .+...++. T Consensus 148 ~~~~~~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~l~~~~~~~d~----- 222 (386) T 1vfs_A 148 VGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL----- 222 (386) T ss_dssp HHHHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSE----- T ss_pred HHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCCC----- T ss_conf 999998621796427999864455577530678999999999999999717886156515863201784014874----- Q ss_pred HHHHHHHHCCCEEE---EEHHHHCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCCCCCC Q ss_conf 99987542165045---30022014574188878878630-------44-3--------334333356565664001345 Q gi|254780741|r 217 RLKEFSEKYSVQIY---LEPGEAIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYLLYQE 277 (367) Q Consensus 217 ~i~~~~~~~~~~l~---iEPGR~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~~~~~ 277 (367) ++-=..-|+..-. ..|-..=..++..+.++|+.++. ++ . .++++..|..+-++-.+.. . T Consensus 223 -vR~Gi~lYG~~p~~~~~~~~~~~lkpv~~l~a~ii~v~~l~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~-~ 300 (386) T 1vfs_A 223 -VRTGLAVYGVSPSPELGTPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASG-R 300 (386) T ss_dssp -EEECGGGGTCCSCGGGCCTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGGTT-T T ss_pred -CCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCHHCCCCCCCCC-C T ss_conf -25531546677674447643457325579988988999878999657777454047856888703142076634579-7 Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECC Q ss_conf 5300024786459986233366645521356677887989999688 Q gi|254780741|r 278 SATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDV 323 (367) Q Consensus 278 ~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~ 323 (367) -++. -....+.|.|..|+ |.+.-+...++.++||.+.+..- T Consensus 301 ~~vl---i~g~~~pivG~vsM--D~~~vDvtd~~~~~GD~V~l~G~ 341 (386) T 1vfs_A 301 GPVL---VAGKIRRAAGRIAM--DQFVVDLGEDLAEAGDEAVILGD 341 (386) T ss_dssp CEEE---ETTEEEEBCSCCCS--SCEEEEEETCCCCTTCEEEEECC T ss_pred EEEE---ECCEEEEEEEEECC--CEEEEECCCCCCCCCCEEEEEEC T ss_conf 0699---99999289649623--43899878987898999999978 No 23 >1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Probab=99.43 E-value=2.6e-10 Score=86.10 Aligned_cols=290 Identities=14% Similarity=0.082 Sum_probs=163.3 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECCC Q ss_conf 68977999999999999985336986999541059----9999999985187489807999989873-688010885377 Q gi|254780741|r 6 YYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNVA 80 (367) Q Consensus 6 ~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~~ 80 (367) .-..|.+.|++|++.++.. ++.+++--+|||. ...|.+.|.+..++|-|++..|....++ |.....+++.+. T Consensus 5 ~~eIdl~al~~N~~~lr~~---~~~ki~aVVKanAYGhG~~~ia~~L~~g~~~faVa~~~Ea~~LR~~g~~~~il~l~~~ 81 (357) T 1rcq_A 5 RALIDLQALRHNYRLAREA---TGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGF 81 (357) T ss_dssp EEEEEHHHHHHHHHHHHHH---HCSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCSCEEETTCC T ss_pred EEEEEHHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCEECCCCC T ss_conf 9998499999999999706---6994999996653538799999999956997999899999999970996420110013 Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH------ Q ss_conf 78034788613886898567205999999861234561489963577443101245578643574278888743------ Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE------ 154 (367) Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~------ 154 (367) ..+++++.+.++...+++.|..+++.+.......+.+|-|-| +|| .+|+|+..+++.+.. T Consensus 82 ~~~~~~~~~~~~~i~~~i~s~~~~~~l~~~~~~~~~~vhLkv------------DTG--M~RlG~~~~e~~~~~~~~~~~ 147 (357) T 1rcq_A 82 FEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNVWLKM------------DSG--MHRVGFFPEDFRAAHERLRAS 147 (357) T ss_dssp SSGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSCEEEEEEB------------CSS--SCSSSBCHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHHC T ss_conf 557788988863146565879999999974636643699997------------267--643356837888889998641 Q ss_pred -HCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE--EE Q ss_conf -149606653056566-61478999999999898650887508753377666445568078999999875421650--45 Q gi|254780741|r 155 -IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ--IY 230 (367) Q Consensus 155 -~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~--l~ 230 (367) ...+.|+..|..+-. .+.....+.++...+...........-|=+|=+..+...++. ++-=..-|+.. -. T Consensus 148 ~~~~~~gi~tH~a~ad~~~~~~~~~q~~~f~~~~~~~~~~~h~aNS~~~l~~~~~~~d~------vR~Gi~lYG~~p~~~ 221 (357) T 1rcq_A 148 GKVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQGLEGEISLRNSPAVLGWPKVPSDW------VRPGILLYGATPFER 221 (357) T ss_dssp TCEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCTTSCCSE------ECCCGGGGTCCSSSS T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCE------ECCCCCCCCCCCCCC T ss_conf 45440345653033556203679999999999875113321146839885484024862------466720145678743 Q ss_pred EEHHHHCCCCCEEEEEEEEEEEC-C-C------CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 30022014574188878878630-4-4------33--------3433335656566400134553000247864599862 Q gi|254780741|r 231 LEPGEAIVTNTTTLNTTVLDISE-N-I------KN--------LVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCG 294 (367) Q Consensus 231 iEPGR~lv~~ag~lv~~V~~~K~-~-~------~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 294 (367) ..+-..-.-++..+-++|+.+|+ . | .. ..++..|-.+-++-.+. ..-.+. -....+.|.| T Consensus 222 ~~~~~~~lkpv~~l~a~i~~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~-~~~~v~---i~G~~~pivG 297 (357) T 1rcq_A 222 AHPLADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAA-DGTLVF---IDGKPGRLVG 297 (357) T ss_dssp CCTTGGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCC-TTCEEE---ETTEEEEBCS T ss_pred CCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCC-CCCEEE---ECCEEEEEEC T ss_conf 445443465128998666898985899987654320025760799861200157541046-882999---9999937857 Q ss_pred CCCCCCCEEEECC-CCCCCCCCCEEEEECCC Q ss_conf 3336664552135-66778879899996887 Q gi|254780741|r 295 RSCLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367) Q Consensus 295 ~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367) ..|+ |.+.-+. ..|+.++||.+.+..-. T Consensus 298 risM--D~~~vdvt~~~~~~~Gd~v~l~G~~ 326 (357) T 1rcq_A 298 RVSM--DMLTVDLTDHPQAGLGSRVELWGPN 326 (357) T ss_dssp CCCS--SCEEEECTTCTTCCTTCEEEEESSS T ss_pred EECC--CEEEEECCCCCCCCCCCEEEEECCC T ss_conf 6340--4389988899778999999997899 No 24 >1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* Probab=99.43 E-value=8.5e-10 Score=82.71 Aligned_cols=304 Identities=12% Similarity=0.129 Sum_probs=175.2 Q ss_pred CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEE Q ss_conf 568-97799999999999998533698699954105----9999999998518-748980799998987-3688010885 Q gi|254780741|r 5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAY 77 (367) Q Consensus 5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~ 77 (367) |.| =.|.+.|+.|++.+++... ++.+++--+||| -...|.+.+.+.| ++|-|+++.|+...+ .|......++ T Consensus 7 ~tw~eIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~ILvl 85 (388) T 1bd0_A 7 DTWAEVDLDAIYDNVENLRRLLP-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVL 85 (388) T ss_dssp SEEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEEC T ss_pred CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE T ss_conf 78999969999999999997489-98979999915026488899999999869899998679999999970899858996 Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH--- Q ss_conf 377780347886138868985672059999998612345--614899635774431012455786435742788887--- Q gi|254780741|r 78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE--- 152 (367) Q Consensus 78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~--- 152 (367) ++.. ++++..+.+....+++.+.+.+..+...++ .+. +|-|-| +|| .+|+|+...+..+ T Consensus 86 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~vhLki------------DTG--M~RlG~~~~e~~~~~~ 149 (388) T 1bd0_A 86 GASR-PADAALAAQQRIALTVFRSDWLEEASALYS-GPFPIHFHLKM------------DTG--MGRLGVKDEEETKRIV 149 (388) T ss_dssp SCCC-GGGHHHHHHTTEEEEECCHHHHHHHHHHCC-CSSCEEEEEEB------------CSS--SCSSSBCSHHHHHHHH T ss_pred CCCC-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEEEE------------ECC--CCCCCCCCHHHHHHHH T ss_conf 1788-689999873266642062999998888761-58863899998------------168--8867878278999999 Q ss_pred -H----HHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHHHHHHHHH Q ss_conf -4----3149606653056566-6147899999999989865088750875337766---64455680789999998754 Q gi|254780741|r 153 -S----EIKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQRLKEFSE 223 (367) Q Consensus 153 -~----~~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~ 223 (367) . ....+.|+..|..+-. .+.+...+.+....+...+.+.....+-++..-. .+...++ T Consensus 150 ~~i~~~~~l~~~Gi~tH~a~ad~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~anS~~~l~~~~~~~d------------- 216 (388) T 1bd0_A 150 ALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFN------------- 216 (388) T ss_dssp HHHHHSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTT------------- T ss_pred HHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCC------------- T ss_conf 9998589961678970246732235288999999999999975324540666256777539502376------------- Q ss_pred HCCCEEEEEHHHHC----------------CCCCEEEEEEEEEEEC-------C-CCCC--------CCCCCCCCCCCCC Q ss_conf 21650453002201----------------4574188878878630-------4-4333--------4333356565664 Q gi|254780741|r 224 KYSVQIYLEPGEAI----------------VTNTTTLNTTVLDISE-------N-IKNL--------VIVDSSVEAHVPD 271 (367) Q Consensus 224 ~~~~~l~iEPGR~l----------------v~~ag~lv~~V~~~K~-------~-~~~~--------v~vd~g~~~~~~~ 271 (367) ++=||..+ .-++..+.++|+.+|+ + +..| +++..|..+-++- T Consensus 217 ------~vR~Gi~lyG~~p~~~~~~~~~~~Lkpv~~l~a~ii~i~~~~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r 290 (388) T 1bd0_A 217 ------MVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLR 290 (388) T ss_dssp ------EEEECGGGGTCCSCGGGGGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCG T ss_pred ------CEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC T ss_conf ------04133688843777665544445750579999973367775799845557520157783599982140256320 Q ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCC------HHHHHC---------CCCCC Q ss_conf 001345530002478645998623336664552135667788798999968870------223243---------47689 Q gi|254780741|r 272 YLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAG------YNINRK---------NWFNG 336 (367) Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GA------Y~~~~~---------~~Fn~ 336 (367) .+.. -.+.. ....+.|.|..|+ |.+.-+... ++++||.+.+....+ -.++.. +.. + T Consensus 291 ~~~~--~~V~i---~g~~~pivGrvsM--D~~~vDv~~-~~~vGD~V~l~G~~~~~~i~~~~~a~~~~ti~yEil~~l-~ 361 (388) T 1bd0_A 291 RLQH--FHVLV---DGQKAPIVGRICM--DQCMIRLPG-PLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTI-S 361 (388) T ss_dssp GGGG--CEEEE---TTEEEEEESCCCS--SCEEEECSS-CCCTTCEEEEEEEETTEEECHHHHHHHHTSCTTHHHHHS-C T ss_pred CCCC--CEEEE---CCEEEEEEEEEEC--CEEEEECCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-C T ss_conf 1479--88999---9998058628713--718998899-999999999986899876189999998689713475087-8 Q ss_pred CCCCEEEEEECCCCEEEEE Q ss_conf 9887799996799099997 Q gi|254780741|r 337 INMPTIAVKNVDGTIKAIR 355 (367) Q Consensus 337 ~~~P~~v~~~~~g~~~~~r 355 (367) ...|.+|+. +|++.-++ T Consensus 362 ~Rv~R~Y~~--~~~~~~~~ 378 (388) T 1bd0_A 362 YRVPRIFFR--HKRIMEVR 378 (388) T ss_dssp TTSCEEEEE--TTEEEEEE T ss_pred CCCCEEEEE--CCEEEEEE T ss_conf 878749948--99798874 No 25 >3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Probab=99.42 E-value=6.3e-10 Score=83.59 Aligned_cols=277 Identities=13% Similarity=0.113 Sum_probs=164.0 Q ss_pred CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEE Q ss_conf 568-97799999999999998533698699954105----9999999998518-7489807999989873-688010885 Q gi|254780741|r 5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAY 77 (367) Q Consensus 5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~ 77 (367) |.+ ..|.+.|++|++.+++.. .++.+++--+||| -...|.+.+.+.| ++|-|+++.|+...++ |......++ T Consensus 8 ~~~l~Idl~al~~N~~~i~~~~-~~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~i~Ea~~LR~~g~~~~ilvl 86 (371) T 3e5p_A 8 PTRLHIDTQAITENVQKECQRL-PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILIL 86 (371) T ss_dssp SCEEEECHHHHHHHHHHHHHSS-CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCEEEE T ss_pred CEEEEEEHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE T ss_conf 9899996999999999999747-998979999945346477899999999879699999099999999972999947864 Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHH-HHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCC-HHHHH-- Q ss_conf 37778034788613886898567205999999-8612345--614899635774431012455786435742-78888-- Q gi|254780741|r 78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKD-KAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEK-CKDKI-- 151 (367) Q Consensus 78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~-~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~-~~~~~-- 151 (367) ++. .++|+..+.+....+++.|..++.++.+ .++..+. +|-|.|+ || .+|+|+. .+++. T Consensus 87 ~~~-~~~~~~~~~~~~l~~~i~s~~~~~~~l~~~a~~~~~~~~vhLkiD------------TG--M~RlG~~~~ee~~~~ 151 (371) T 3e5p_A 87 SVV-DLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVD------------TG--MGRIGFLTPEETKQA 151 (371) T ss_dssp EEC-CGGGHHHHHHHTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBC------------SS--SCSSSBCSSHHHHHH T ss_pred CCC-CCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEE------------CC--CCCCCCCCHHHHHHH T ss_conf 156-820578997379669964099999999999874277647999993------------89--986798747899999 Q ss_pred -H----HHHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCHHHHHHHHHHHHH Q ss_conf -7----431496066530565666-1478999999999898650887508753377666-44556807899999987542 Q gi|254780741|r 152 -E----SEIKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHF-TDKDYPVKDFCQRLKEFSEK 224 (367) Q Consensus 152 -~----~~~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~-~~~~~~~~~~~~~i~~~~~~ 224 (367) + .....+.|+..|..|... +.+...+.++...+....+.....++-++..-.. .+++.. T Consensus 152 ~~~~~~~~~l~~~gi~tH~~~a~~~~~~~~~~q~~~f~~~~~~~~~~~~~~h~~nS~~~l~~~~~~-------------- 217 (371) T 3e5p_A 152 VRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVP-------------- 217 (371) T ss_dssp HHHHHHSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSCCCSEEECBCHHHHHHCTTSS-------------- T ss_pred HHHHHHCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCC-------------- T ss_conf 999874126333020210013456663789999999999998631366336641766764585335-------------- Q ss_pred CCCEEEEEHHHHC---------------CCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCC Q ss_conf 1650453002201---------------4574188878878630-------44-3--------33433335656566400 Q gi|254780741|r 225 YSVQIYLEPGEAI---------------VTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYL 273 (367) Q Consensus 225 ~~~~l~iEPGR~l---------------v~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~ 273 (367) ++ ++-||..+ .-++..+.++|+.+|. ++ . +.+++..|-.+-.+-.+ T Consensus 218 ~d---~vR~Gi~lYG~~p~~~~~~~~~~lkpv~~l~a~Ii~v~~~~~G~~vGYg~~~~a~~~~~iaiv~iGYaDG~~r~~ 294 (371) T 3e5p_A 218 GN---MIRYGVAMYGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHL 294 (371) T ss_dssp CS---EEEECGGGGTCCTTTTSSCCSSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGG T ss_pred CC---CCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCC T ss_conf 77---451597431889877655643254151464895338899348986676762025778579998136205601004 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEC Q ss_conf 1345530002478645998623336664552135667788798999968 Q gi|254780741|r 274 LYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFED 322 (367) Q Consensus 274 ~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~ 322 (367) .. ..+.. ....+.|.|..|+ |.+.-+... +.++||.+.+.. T Consensus 295 ~~--~~v~i---~G~~~pivG~isM--D~~~vDvt~-~~~vGD~v~l~G 335 (371) T 3e5p_A 295 QG--FTVLV---NGKRCEIVGRVCM--DQCMIRLAE-EVPVGPVVTLVG 335 (371) T ss_dssp TT--CEEES---SSCEEEEESCCCS--SCEEEEESS-CCCSCCEEEEEE T ss_pred CC--CEEEE---CCEEEEEEEEECC--CEEEEECCC-CCCCCCEEEEEE T ss_conf 69--76999---9998468648534--437998889-999999999985 No 26 >3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae} Probab=99.41 E-value=1.6e-09 Score=80.82 Aligned_cols=291 Identities=15% Similarity=0.088 Sum_probs=162.0 Q ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECC Q ss_conf 68977999999999999985336986999541059----999999998518-7489807999989873-68801088537 Q gi|254780741|r 6 YYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNV 79 (367) Q Consensus 6 ~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~ 79 (367) .-..|.+.|++|++.+++... +.+++--+|||. ...|.+.+.+.| +++-|+++.|....++ +.....++..+ T Consensus 22 ~a~Idl~ai~~N~~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~il~l~~ 99 (376) T 3kw3_A 22 IATIDVRAIVANYRTLAQHVA--PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIALLN 99 (376) T ss_dssp EEEECHHHHHHHHHHHHHHHT--TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEETT T ss_pred EEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHC T ss_conf 999829999999999997579--982999997741416599999999986969999938899999997288542556306 Q ss_pred CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----- Q ss_conf 778034788613886898567205999999861234561489963577443101245578643574278888743----- Q gi|254780741|r 80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----- 154 (367) Q Consensus 80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----- 154 (367) ....++.+.+.++....++.|+++++.+.+.++..+.++-+-+. ++|| .+|+|+..+++.+.. T Consensus 100 ~~~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~vhlk----------vDTG--M~RlG~~~~e~~~~i~~i~~ 167 (376) T 3kw3_A 100 GFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQ----------VDTN--MSRLGLDKKELQKLIKNPTI 167 (376) T ss_dssp CCCTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEE----------BCSS--CCSSSBCHHHHHHHHHCCTH T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE----------EECC--CCCCCCCHHHHHHHHHHHHH T ss_conf 79778999987412344006599999999889863887149999----------8489--98478886899999887664 Q ss_pred --HCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf --1496066530565666-147899999999989865088-750875337766644556807899999987542165045 Q gi|254780741|r 155 --IKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFIT-QIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIY 230 (367) Q Consensus 155 --~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~-~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 230 (367) ..++.|+..|..+-.. +.....+......+...+... .....|=+|=+..+...++. ++-=..-|+..- T Consensus 168 ~~~l~i~Gi~THfa~ad~~~~~~~~~q~~~~~~~~~~~~~~~~h~~NSag~~~~~~~~~d~------vR~Gi~lYG~~p- 240 (376) T 3kw3_A 168 FEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDL------VRPGIALYGVDP- 240 (376) T ss_dssp HHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTE------ECCSGGGGTCCT- T ss_pred CCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCC------EECCEEEECCCC- T ss_conf 0474377898776135567828899999999999751775465554769986392321464------203402525776- Q ss_pred EEHHHHCCCCCEEEEEEEEEEECC--C------CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 300220145741888788786304--4------33--------3433335656566400134553000247864599862 Q gi|254780741|r 231 LEPGEAIVTNTTTLNTTVLDISEN--I------KN--------LVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCG 294 (367) Q Consensus 231 iEPGR~lv~~ag~lv~~V~~~K~~--~------~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G 294 (367) ......-.-++..+-++|+.+|.- + .. .+++..|-.+-++-.+. ..-.+. -....+.|.| T Consensus 241 ~~~~~~~l~pv~~l~s~i~~vk~v~~G~~VgYg~~~~a~~~~~ia~v~vGYaDG~~R~~~-~~~~V~---i~g~~~~ivG 316 (376) T 3kw3_A 241 HGKHPTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILS-NKGTVY---FNGHKLPIVG 316 (376) T ss_dssp TCCSSCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCGGGT-TTCEEE---ETTEEEEBCS T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCC-CCCEEE---ECCEEEEEEE T ss_conf 434222356550699998654454489866668723337874998504534677552347-885799---9999827962 Q ss_pred CCCCCCCEEEECCC--CCCCCCCCEEEEECC Q ss_conf 33366645521356--677887989999688 Q gi|254780741|r 295 RSCLAGDIFGEFHF--EKPVKIGDRISFEDV 323 (367) Q Consensus 295 ~~C~~~D~l~~~~~--~~~l~~GD~l~i~~~ 323 (367) ..|+ |.+.-+.. +.+.++||.+.+..- T Consensus 317 risM--D~~~vDvt~~~~~~~vGD~V~l~G~ 345 (376) T 3kw3_A 317 HISM--DSIIVDATDLDKKPQRGDWVELIGP 345 (376) T ss_dssp CCCS--SCEEEECTTCSSCCCTTCEEEEEBT T ss_pred EECC--CEEEEECCCCCCCCCCCCEEEEEEC T ss_conf 8635--3489987788777999999999819 No 27 >3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} Probab=99.39 E-value=1.4e-09 Score=81.33 Aligned_cols=289 Identities=13% Similarity=0.077 Sum_probs=160.8 Q ss_pred CCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEE Q ss_conf 8568-97799999999999998533698699954105----9999999998518-748980799998987-368801088 Q gi|254780741|r 4 TPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHA 76 (367) Q Consensus 4 TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~ 76 (367) -|.+ -.|.+.|+.|++.+++... +.+++-.+||| -...|.+.+.+.| ++|-|+++.|....+ .|.....++ T Consensus 8 r~t~leIdl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~Ilv 85 (380) T 3co8_A 8 RSTRIEFSKSSLAYNVQYTKQVSG--AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFILI 85 (380) T ss_dssp SSCEEEECHHHHHHHHHHHHHHHC--CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCEEE T ss_pred CCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEE T ss_conf 987999839999999999985579--984999997434647899999999986979999919999999997399983899 Q ss_pred ECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HH---HH Q ss_conf 537778034788613886898567205999999861234561489963577443101245578643574278-88---87 Q gi|254780741|r 77 YNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DK---IE 152 (367) Q Consensus 77 ~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~---~~ 152 (367) ++|. .++|+..+.+.....++.|.++++.+.+.+++.+.+|-|-| +|| .+|+|+..+ ++ .+ T Consensus 86 l~~~-~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~VhLki------------DTG--M~RlG~~~~~~~~~~~~ 150 (380) T 3co8_A 86 LGPI-DVKYAPIASKYHFLTTVSSLDWLKSADKILGKEKLSVNLAV------------DTG--MNRIGVRSKKDLKDEIE 150 (380) T ss_dssp CSCC-CGGGHHHHHHTTCEEEECCHHHHHHHHHHCTTCCEEEEEEB------------CSS--SCSSSBCSHHHHHHHHH T ss_pred EECC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE------------ECC--CCCCCCCCHHHHHHHHH T ss_conf 7254-21233688872531000249999999997346884389998------------268--98677773467899999 Q ss_pred HH-----HCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 43-----1496066530565666-1478999999999898650887-508753377666445568078999999875421 Q gi|254780741|r 153 SE-----IKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFITQ-IEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY 225 (367) Q Consensus 153 ~~-----~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~-l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~ 225 (367) .. ...+.|+-.|..+-.. +.......++...+..+.+... +..+--.++.-.....++ ...+.+ +- T Consensus 151 ~l~~~~~~l~~~Gi~SHfa~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~d~v-----R~ 223 (380) T 3co8_A 151 FLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIMPRYVHVMNSGAAMYHSKELP--GCNSIA-----RV 223 (380) T ss_dssp HHHHCTTTEEEEEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGGGCT--TSCSEE-----EE T ss_pred HHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCHHCC--CCCCCC-----CC T ss_conf 97641135440026620236677764788999999999997435753145533165635811156--432234-----67 Q ss_pred CCEEE-EEHHH------HCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 65045-30022------014574188878878630-------44-3--------33433335656566400134553000 Q gi|254780741|r 226 SVQIY-LEPGE------AIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYLLYQESATIY 282 (367) Q Consensus 226 ~~~l~-iEPGR------~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~~~~~~~~~~ 282 (367) ++-++ ..|.. .-.-++..+.++|+.+|+ ++ . +.+++..|..+-++..+.. -.+.. T Consensus 224 Gi~lYG~~p~~~~~~~~~~lkpv~~l~a~i~~ik~v~~G~~VgYg~~~~~~~~~~iavv~iGYaDG~~r~~~~--~~v~i 301 (380) T 3co8_A 224 GTVVYGVEPSEGVLGPIDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQD--FQLLI 301 (380) T ss_dssp STTTTTCCTTTTSSSCGGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CEEEE T ss_pred CCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCC--CEEEE T ss_conf 7222456787444451003773189975211314648998666666310378728999801613551520479--87999 Q ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC Q ss_conf 247864599862333666455213566778879899996887 Q gi|254780741|r 283 PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA 324 (367) Q Consensus 283 ~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G 324 (367) ....+.|+|..|+ |.+.-+.. .+.++||.+++..-. T Consensus 302 ---~G~~~pivGrisM--D~~~vdv~-~~~~vGD~V~l~G~~ 337 (380) T 3co8_A 302 ---DGQKCRQVGQIAM--DQMMVALP-HEYPIGTEVTLIGKS 337 (380) T ss_dssp ---TTEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEE T ss_pred ---CCEEEEECCEECC--CEEEEECC-CCCCCCCEEEEEECC T ss_conf ---9999027157334--60699899-999999999998489 No 28 >2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Probab=99.38 E-value=1.5e-09 Score=81.14 Aligned_cols=292 Identities=12% Similarity=0.087 Sum_probs=165.4 Q ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC Q ss_conf 8568977999999999999985336986999541059----999999998518748980799998987-36880108853 Q gi|254780741|r 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN 78 (367) Q Consensus 4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~ 78 (367) +...+.|.+.|+.|++.+++.. ++.+++--+|||. ...+.+.+.+ .+.|-|+++.|....+ +|.....++++ T Consensus 23 ~a~~~Idl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~-~~~faVa~~~EA~~LR~~gi~~~ilil~ 99 (379) T 2rjg_A 23 AATVVINRRALRHNLQRLRELA--PASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVLLLE 99 (379) T ss_dssp CSEEEEEHHHHHHHHHHHHHHS--TTSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEEETT T ss_pred CEEEEECHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHC-CCEEEEEEHHHHHHHHHHCCCCCEECCC T ss_conf 6599995999999999999668--998699999645263878999999960-9989993999999999748998621034 Q ss_pred CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---- Q ss_conf 7778034788613886898567205999999861234561489963577443101245578643574278888743---- Q gi|254780741|r 79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE---- 154 (367) Q Consensus 79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~---- 154 (367) +...++++..+.++....++.|.++++.+.+.....+.+|-|-| +|| .+|+|+..+++.+.. T Consensus 100 ~~~~~~~~~~~~~~~i~~~i~s~~~l~~~~~~~~~~~~~vhlki------------DTG--M~RlG~~~~e~~~~~~~~~ 165 (379) T 2rjg_A 100 GFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKL------------DTG--MHRLGVRPEQAEAFYHRLT 165 (379) T ss_dssp CCSCGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSCBCEEEEB------------CSS--CCSSSBCHHHHHHHHHHHT T ss_pred CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHH T ss_conf 68998999999970666356979999999987348981799998------------178--8888978056788899998 Q ss_pred ----HCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE- Q ss_conf ----149606653056566-61478999999999898650887508753377666445568078999999875421650- Q gi|254780741|r 155 ----IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ- 228 (367) Q Consensus 155 ----~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~- 228 (367) ...+.|+-.|..+.. .+.....+.++...+..+.........|=+|=+..+...++. ++-=..-|+.. T Consensus 166 ~~~~~l~~~Gi~THfa~ad~~d~~~~~~Q~~~F~~~~~~~~~~~h~anS~a~l~~~~~~~d~------vR~Gi~lYG~~p 239 (379) T 2rjg_A 166 QCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDW------VRPGIILYGVSP 239 (379) T ss_dssp TCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCGGGCSSE------ECCCGGGGTCCS T ss_pred HHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCCCCC------CCCCCCEECCCC T ss_conf 74044410358825577654451999999999999975223201001787775787234765------467861563665 Q ss_pred --EEEEHHHHCCCCCEEEEEEEEEEEC-------C-CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf --4530022014574188878878630-------4-43--------3343333565656640013455300024786459 Q gi|254780741|r 229 --IYLEPGEAIVTNTTTLNTTVLDISE-------N-IK--------NLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTA 290 (367) Q Consensus 229 --l~iEPGR~lv~~ag~lv~~V~~~K~-------~-~~--------~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (367) -.-.+...=.-++..+-++|..+|. + +. +.+++..|..+-++-.+.. ...+.. ....+ T Consensus 240 ~~~~~~~~~~~Lkpv~sl~a~i~~v~~l~~G~~VgYg~~~~a~~~~~ia~ipiGYaDG~~R~~~~-~~~V~i---~G~~~ 315 (379) T 2rjg_A 240 LEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPS-GTPVLV---NGREV 315 (379) T ss_dssp SSSSCCGGGGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCT-TCEEEE---TTEEE T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEECCCCEEEEEECCEECCCCCCCCCC-CCEEEE---CCEEE T ss_conf 43445433457631278689823679967998556776155269839999744411672555679-958999---99991 Q ss_pred EEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC Q ss_conf 98623336664552135-66778879899996887 Q gi|254780741|r 291 MVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA 324 (367) Q Consensus 291 ~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G 324 (367) .|.|..|+ |.+.-+. ..++.++||.+.+..-+ T Consensus 316 pivGrv~M--D~~~vDlt~~~~~~~GD~V~L~G~~ 348 (379) T 2rjg_A 316 PIVGRVAM--DMICVDLGPQAQDKAGDPVILWGEG 348 (379) T ss_dssp EBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBTT T ss_pred EEEEEECC--CEEEEECCCCCCCCCCCEEEEECCC T ss_conf 57779725--4289988898889999999997899 No 29 >2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Probab=99.37 E-value=1.6e-08 Score=74.32 Aligned_cols=316 Identities=12% Similarity=0.115 Sum_probs=171.6 Q ss_pred EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCC Q ss_conf 8977999999999999985336986999541059----999999998518-748980799998987-3688010885377 Q gi|254780741|r 7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVA 80 (367) Q Consensus 7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~ 80 (367) -=.|.+.|++|++.+++... ++++++--+|||. ...|.+.+.+.| ++|-|+++.|....+ .|......+++| T Consensus 14 ~EIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~gi~~~Ilvl~~- 91 (391) T 2vd8_A 14 VEVDLDAIYNNVTHIXEFIP-SDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILVLGP- 91 (391) T ss_dssp EEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEECSC- T ss_pred EEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEC- T ss_conf 99859999999999997479-9987999991502647889999999986989999916999999997199997799748- Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HHHHH------ Q ss_conf 78034788613886898567205999999861234561489963577443101245578643574278-88874------ Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DKIES------ 153 (367) Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~~~~------ 153 (367) ..++++..+.++....++.|.+++..+.+.++ .+.++-+-|+ ++|| .+|+|+... ++.+. T Consensus 92 ~~~~~~~~~~~~~~~~~i~s~~~l~~~~~~~~-~~~~~~vhlk----------iDTG--M~RlG~~~~~e~~~~~~~i~~ 158 (391) T 2vd8_A 92 SPPRDINVAAENDVALTVFQXEWVDEAIXLWD-GSSTMXYHIN----------FDSG--MGRIGIRERXELXGFLXSLEG 158 (391) T ss_dssp CCGGGHHHHHHTTEEEECCCHHHHHHHHHHCC-SSCCEEEEEE----------BCSS--CCSSSBCCHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCCEEEEEE----------ECCC--CCCCCCCCHHHHHHHHHHHHH T ss_conf 88256556542053203405999999999860-4686489999----------6379--886788741468999999972 Q ss_pred -HHCCCEEEEECCCCC-CCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECC---CCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf -314960665305656-66147899999999989---865088750875337---7666445568078999999875421 Q gi|254780741|r 154 -EIKNVNGLMFHNNCE-NKSFLCFSAMLKNIEKE---FGHFITQIEWISLGG---GIHFTDKDYPVKDFCQRLKEFSEKY 225 (367) Q Consensus 154 -~~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGG---G~~~~~~~~~~~~~~~~i~~~~~~~ 225 (367) ...++.|+-.|..+- ..+.+...+.++...+. +.+.+.+...+.+.. -+..+...++. ++-=..-| T Consensus 159 ~~~l~i~Gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~------VR~Gi~lY 232 (391) T 2vd8_A 159 APFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNA------VRIGIAMY 232 (391) T ss_dssp CTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTE------EEESTTTT T ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCC------EECCCCEE T ss_conf 899650367612276776540567899999999999998628983205522767664675235773------40682014 Q ss_pred CCEEEE--EHHHH-CCCCCEEEEEEEEEEEC-------C-CCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 650453--00220-14574188878878630-------4-433--------34333356565664001345530002478 Q gi|254780741|r 226 SVQIYL--EPGEA-IVTNTTTLNTTVLDISE-------N-IKN--------LVIVDSSVEAHVPDYLLYQESATIYPNTG 286 (367) Q Consensus 226 ~~~l~i--EPGR~-lv~~ag~lv~~V~~~K~-------~-~~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~ 286 (367) +..-.. .+..- =.-+++.+.++|+.+|+ + +.. .+++..|-.+-++-.+.. ..+.. . T Consensus 233 G~~p~~~~~~~~~~~Lkpv~~l~s~v~~i~~~~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~~r~~~~--~~v~i---~ 307 (391) T 2vd8_A 233 GLSPSVEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQG--FEVLV---N 307 (391) T ss_dssp TCCSCTTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CEEEE---T T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCEEECCCCEEEEEECEEECCCCCCCCCC--CEEEE---C T ss_conf 777763324455534322166541001069846999778676275136648988441806862304679--88999---9 Q ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC------CH---------HHHHCCCCCCCCCCEEEEEECCCCE Q ss_conf 64599862333666455213566778879899996887------02---------2324347689988779999679909 Q gi|254780741|r 287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA------GY---------NINRKNWFNGINMPTIAVKNVDGTI 351 (367) Q Consensus 287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G------AY---------~~~~~~~Fn~~~~P~~v~~~~~g~~ 351 (367) ...+-|+|..|+ |.+.-+.. .+.++||.+++.... +- .+.+-+.. +...|.+|+. +|.+ T Consensus 308 G~~~pivGri~M--D~~~VDv~-~~v~~GD~v~l~G~~~~~~i~~~~~a~~~gti~yEil~~l-~~Rv~R~yv~--~g~~ 381 (391) T 2vd8_A 308 GXRVPIVGRVTM--DQFMIHLP-CEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI-SFRVPRIFIR--NGXV 381 (391) T ss_dssp TEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS-CTTSCEEEEE--TTEE T ss_pred CEECCEEEEECC--CEEEEECC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-CCCCCEEEEE--CCEE T ss_conf 988747457546--43799899-9999999899977999878899999998789613686087-8888759997--9979 Q ss_pred EEE Q ss_conf 999 Q gi|254780741|r 352 KAI 354 (367) Q Consensus 352 ~~~ 354 (367) .-+ T Consensus 382 ~~~ 384 (391) T 2vd8_A 382 VEV 384 (391) T ss_dssp EEE T ss_pred EEE T ss_conf 999 No 30 >3oo2_A Alanine racemase 1; infectious diseases, center for structural of infectious diseases (csgid); 2.37A {Staphylococcus aureus subsp} Probab=99.36 E-value=3.8e-09 Score=78.42 Aligned_cols=290 Identities=15% Similarity=0.108 Sum_probs=158.8 Q ss_pred CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEE Q ss_conf 568-97799999999999998533698699954105----9999999998518-7489807999989873-688010885 Q gi|254780741|r 5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAY 77 (367) Q Consensus 5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~ 77 (367) |.| -.|.+.|++|++.+++.. ++.+++--+||| -...|.+.+.+.| ++|-|+++.|....++ |.....+++ T Consensus 11 ~t~leIdl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~Ilvl 88 (385) T 3oo2_A 11 SAYMNVDLNAVASNFKVFSTLH--PNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILVL 88 (385) T ss_dssp SEEEEEEHHHHHHHHHHHHHHS--TTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSEEEEC T ss_pred CEEEEECHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE T ss_conf 8899994999999999999558--99859999966036488999999999869799999089999999966999855761 Q ss_pred CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHH-HCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH----HHH Q ss_conf 3777803478861388689856720599999986-12345614899635774431012455786435742788----887 Q gi|254780741|r 78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKA-QKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD----KIE 152 (367) Q Consensus 78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a-~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~----~~~ 152 (367) ++. .+.|+..+.++....++-|.+++..+.+.+ +..+.++-+-++ ++|| .+|+|+...+ +.+ T Consensus 89 ~~~-~~~e~~~~~~~~l~~~i~~~~~l~~~~~~~~~~~~~~~~vhLk----------iDTG--M~RlG~~~~e~~~~~~~ 155 (385) T 3oo2_A 89 GVL-PAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIK----------LDTG--MGRLGIKDTKTYQEVIE 155 (385) T ss_dssp SCC-CGGGHHHHHHTTEEEEECCHHHHHHHHHTCCSSCCSCEEEEEE----------BCCS--SCCSSBCSHHHHHHHHH T ss_pred CCC-CHHHHHHHHHHHHHCEEEHHHHHHHHHHHHHHHCCCCEEEEEE----------ECCC--CCCCCCCCHHHHHHHHH T ss_conf 566-6266999997310014414666678999987634896379999----------7578--87678883678999999 Q ss_pred H----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 4----314960665305656661478999999999898650887508753---377666445568078999999875421 Q gi|254780741|r 153 S----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISL---GGGIHFTDKDYPVKDFCQRLKEFSEKY 225 (367) Q Consensus 153 ~----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idi---GGG~~~~~~~~~~~~~~~~i~~~~~~~ 225 (367) . ....+.|+..|..+-........+.+....+.... .....++.+ +|.+..+...++.- +-=..-| T Consensus 156 ~~~~~~~l~i~Gi~SH~a~ad~~~~~~~~q~~~f~~~~~~-~~~~~~~h~anS~~~~~~~~~~~d~v------R~Gi~ly 228 (385) T 3oo2_A 156 IIQQYEQLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNE-AIKPEYIHCQNSAGSLLMDCQFCNAI------RPGISLY 228 (385) T ss_dssp HHTTCTTEEEEEEECCCSSTTSSSSHHHHHHHHHHHHHHT-SCCCSEEEEECHHHHHHCCCTTCCEE------CCCGGGG T ss_pred HHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCEECCCCHHHHCCCHHHCCEE------CCCEEEE T ss_conf 9753574578889860133443320448999999887652-26865200124375655827655602------3427998 Q ss_pred CCEEE---EEHHHHCCCCCEEEEEEEEEEEC--CC------C--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 65045---30022014574188878878630--44------3--------334333356565664001345530002478 Q gi|254780741|r 226 SVQIY---LEPGEAIVTNTTTLNTTVLDISE--NI------K--------NLVIVDSSVEAHVPDYLLYQESATIYPNTG 286 (367) Q Consensus 226 ~~~l~---iEPGR~lv~~ag~lv~~V~~~K~--~~------~--------~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~ 286 (367) +..-. ..+-+.-+-++..+.++|+.+|+ .| . +.+++..|-.+-++-.+.. -.+.. . T Consensus 229 G~~p~~~~~~~~~~~lkpv~~l~a~ii~i~~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~--~~v~i---~ 303 (385) T 3oo2_A 229 GYYPSEYVQQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQG--SFVNV---N 303 (385) T ss_dssp TCCSSHHHHHHCCCCCCCCEEEEEECCEEEEECTTCBCCCC--CBCSSCEEEEEESCCGGGTCCGGGTT--CEEEE---T T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCCCCC--CEEEE---C T ss_conf 656753213322235565078777778899834998656686045067742899962300560523689--88999---9 Q ss_pred CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC Q ss_conf 64599862333666455213566778879899996887 Q gi|254780741|r 287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA 324 (367) Q Consensus 287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G 324 (367) ...+.|.|..|+ |.+.-+... ++++||.+.+..-. T Consensus 304 G~~~pivGri~M--D~~~vDv~~-~~~~GD~V~l~G~~ 338 (385) T 3oo2_A 304 GHQCEVIGRVCM--DQTIVKVPD-QVKAGDSVILIDNH 338 (385) T ss_dssp TEEEEEESCCCS--SCEEEEECT-TCCTTCEEEEECSC T ss_pred CEEEEEEEEECC--CCEEEECCC-CCCCCCEEEEEECC T ss_conf 999258708656--716998899-99999999997289 No 31 >1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Probab=99.32 E-value=8.5e-09 Score=76.11 Aligned_cols=289 Identities=12% Similarity=0.077 Sum_probs=157.4 Q ss_pred EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCC Q ss_conf 897799999999999998533698699954105----9999999998518-748980799998987-3688010885377 Q gi|254780741|r 7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVA 80 (367) Q Consensus 7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~ 80 (367) -+.|.+.|++|++.++.... +.+++--+||| -...|.+.+.+.| .+|-|+++.|+...+ .|.....+++.+. T Consensus 14 a~Idl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~ia~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~Il~l~~~ 91 (384) T 1xfc_A 14 AMVDLGAIEHNVRVLREHAG--HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHP 91 (384) T ss_dssp EEEEHHHHHHHHHHHHHHHT--TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCEEECCCC T ss_pred EEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEECCC T ss_conf 99939999999999997689--9839999925245378999999999779798999389999999982898866997079 Q ss_pred CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----- Q ss_conf 7803478861388689856720599999986123456--148996357744310124557864357427888874----- Q gi|254780741|r 81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----- 153 (367) Q Consensus 81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----- 153 (367) ..+++..+.+.....++.|.++++.+.+.++..+.. |-|-|+ || .+|+|+..+++.+. T Consensus 92 -~~~~~~~~~~~~~~~~i~s~~~l~~l~~~~~~~~~~~~vhLkvD------------TG--M~RlG~~~~~~~~~~~~~~ 156 (384) T 1xfc_A 92 -PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD------------TG--LNRNGVGPAQFPAMLTALR 156 (384) T ss_dssp -TTCCCHHHHHTTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBC------------SS--CCSSSBCTTTHHHHHHHHH T ss_pred -CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEE------------CC--CCCCCCCCHHHHHHHHHHH T ss_conf -87889999755854663669999999999997399835999980------------79--8878878056799999998 Q ss_pred -----HHCCCEEEEECCCCCCC-CHHHHHHHHH---HHHHHHHHCCCCCEEEEECC--C-CCCCCCCCCCHHHHHHHHHH Q ss_conf -----31496066530565666-1478999999---99989865088750875337--7-66644556807899999987 Q gi|254780741|r 154 -----EIKNVNGLMFHNNCENK-SFLCFSAMLK---NIEKEFGHFITQIEWISLGG--G-IHFTDKDYPVKDFCQRLKEF 221 (367) Q Consensus 154 -----~~~~i~Gih~H~gs~~~-~~~~~~~~l~---~~~~~~~~~~~~l~~idiGG--G-~~~~~~~~~~~~~~~~i~~~ 221 (367) ...++.|+-.|..+... +.+.....++ .+.+.+.+.+....++.+.. | +..+...++. ++-= T Consensus 157 ~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~~~~nS~~~~~~~~~~~d~------vR~G 230 (384) T 1xfc_A 157 QAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDL------VRPG 230 (384) T ss_dssp HHHHTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGGGCCSE------ECCS T ss_pred HHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCC------EECC T ss_conf 6653472667457876772378874267999999999998777508982044554136665094220365------3158 Q ss_pred HHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-------CC-CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 54216504530022014574188878878630-------44-33--------3433335656566400134553000247 Q gi|254780741|r 222 SEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE-------NI-KN--------LVIVDSSVEAHVPDYLLYQESATIYPNT 285 (367) Q Consensus 222 ~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-------~~-~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~ 285 (367) ..-|+..-.-+.-..=.-++..+.++|+.+|+ ++ .. .+++..|-.+-++-.+.. .-. +. - T Consensus 231 i~lYG~~p~~~~~~~~l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~-~~~-v~--i 306 (384) T 1xfc_A 231 IAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGG-RLE-VL--I 306 (384) T ss_dssp GGGGTCCSSGGGCCTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGGTT-TCE-EE--E T ss_pred CCEECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCC-CCE-EE--E T ss_conf 2013566776310004676403543578888868999656676231567865999950110565521079-867-99--8 Q ss_pred CCEEEEEECCCCCCCCEEEECC-CCC-CCCCCCEEEEECCC Q ss_conf 8645998623336664552135-667-78879899996887 Q gi|254780741|r 286 GPYTAMVCGRSCLAGDIFGEFH-FEK-PVKIGDRISFEDVA 324 (367) Q Consensus 286 ~~~~~~v~G~~C~~~D~l~~~~-~~~-~l~~GD~l~i~~~G 324 (367) ....+-|.|..|+ |.+.-+. ..| +.++||.+.+..-. T Consensus 307 ~G~~~piiG~isM--D~~~vDvt~~~~~v~vGD~V~l~G~~ 345 (384) T 1xfc_A 307 NGRRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPG 345 (384) T ss_dssp TTEEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSS T ss_pred CCEEEEEECEECC--CCEEEEECCCCCCCCCCCEEEEECCC T ss_conf 9999788257556--61799925887779999999997189 No 32 >3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Probab=99.31 E-value=3e-09 Score=79.08 Aligned_cols=291 Identities=13% Similarity=0.115 Sum_probs=156.9 Q ss_pred CCCCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC--CEEEEECHHHHHHHHC-CCCCC Q ss_conf 888568-977999999999999985336986999541059----999999998518--7489807999989873-68801 Q gi|254780741|r 2 IKTPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM--DGTTSSSLYEVMLGHE-KFGGE 73 (367) Q Consensus 2 i~TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g--~g~dv~S~~E~~la~~-g~~~~ 73 (367) +.-|.| -.|.+.|+.|++.+++.. ++.+++-.+|||. ...|.+.+.+.+ ++|-|++..|+...++ |.... T Consensus 6 ~~R~t~~eIdl~al~~N~~~ir~~~--~~~~i~aVVKanAYGhG~~~va~~l~e~~g~d~faVa~ieEa~~LR~~g~~~~ 83 (395) T 3hur_A 6 IHRPTWVSVDLDAAAHNLQEIREWT--KAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLP 83 (395) T ss_dssp CSCCEEEEEEHHHHHHHHHHHHHHH--TCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSC T ss_pred CCCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCE T ss_conf 8999899984999999999999668--99859999966226488899999999878999999929999999996699983 Q ss_pred CEEECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH- Q ss_conf 0885377780347886138868985672059999998612345614899635774431012455786435742788887- Q gi|254780741|r 74 THAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE- 152 (367) Q Consensus 74 ~i~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~- 152 (367) .+++++ ..++|+..+.+...+.++.|+++++.+.+ ...++-+-+ .++|| .+|+|+...+..+ T Consensus 84 Ilvl~~-~~~~e~~~~~~~~l~~~i~s~~~l~~~~~----~~~~~~vhl----------kiDTG--M~RlG~~~~d~~~~ 146 (395) T 3hur_A 84 IWVLGA-WDYSDLKLFIDHDIVITIPSLAWLQNLPD----FEGTLKVSL----------AIDTG--MTRIGFDKADEISA 146 (395) T ss_dssp EEESSC-CCGGGHHHHHHTTEEEEECCHHHHHTCCC----CSSCEEEEE----------EBCCS--SCSSSBCCHHHHHH T ss_pred EEEECC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHH----HCCCCEEEE----------EECCC--CCCCCCCCHHHHHH T ss_conf 999668-89799999998432343006888866675----168735999----------98178--88789880678999 Q ss_pred -------HHHCCCEEEEECCCCCCC-CHHH---HHHHHHHHHHHHHHCCCCCEEEEECC---CCCC-CCCCCCCHHHHHH Q ss_conf -------431496066530565666-1478---99999999989865088750875337---7666-4455680789999 Q gi|254780741|r 153 -------SEIKNVNGLMFHNNCENK-SFLC---FSAMLKNIEKEFGHFITQIEWISLGG---GIHF-TDKDYPVKDFCQR 217 (367) Q Consensus 153 -------~~~~~i~Gih~H~gs~~~-~~~~---~~~~l~~~~~~~~~~~~~l~~idiGG---G~~~-~~~~~~~~~~~~~ 217 (367) .....+.|+..|..+-.. +... ..+.++.+.+.....+.+..++-+.. -+.. ..++..++. T Consensus 147 ~~~~~~~~~~l~l~Gi~SHla~ad~~~~~~~~~~~~q~~~f~~~~~~~~~~~~~~h~~nSa~~l~~~~~p~~~~d~---- 222 (395) T 3hur_A 147 AKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAA---- 222 (395) T ss_dssp HHHHHHHCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSCCCGGGEECCCHHHHHHTTTCTTSCCSE---- T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCCCCE---- T ss_conf 9999985688627999761146663342116899999999999998459984266512404466325770104634---- Q ss_pred HHHHHHHCCC-----EEEEEHHHHCCCCCEEEEEEEEEEECC--C------C--------CCCCCCCCCCCCCCCCCCCC Q ss_conf 9987542165-----045300220145741888788786304--4------3--------33433335656566400134 Q gi|254780741|r 218 LKEFSEKYSV-----QIYLEPGEAIVTNTTTLNTTVLDISEN--I------K--------NLVIVDSSVEAHVPDYLLYQ 276 (367) Q Consensus 218 i~~~~~~~~~-----~l~iEPGR~lv~~ag~lv~~V~~~K~~--~------~--------~~v~vd~g~~~~~~~~~~~~ 276 (367) ++-=..-|+. +.-. |-..-..++..+.++|+.+|+- + . +.+++..|..+-++..+.. T Consensus 223 vR~Gi~lYG~~p~~~~~~~-~~~~~l~pv~sl~a~Ii~vr~~~~G~~vGYg~~~~a~~~~~iavv~iGYaDG~~r~~~~- 300 (395) T 3hur_A 223 IRPGQLISGVNVSNGELKM-PPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQK- 300 (395) T ss_dssp ECCCGGGGTCCTTTTSSCC-CTTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGGGGEEE- T ss_pred EEECCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC- T ss_conf 7511201366677543345-65434453133201001147715897262155412577725997226656883300479- Q ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC Q ss_conf 553000247864599862333666455213566778879899996887 Q gi|254780741|r 277 ESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA 324 (367) Q Consensus 277 ~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G 324 (367) -.+.. ....+.|.|..|+ |.+.-+.. .+.++||.+.+.... T Consensus 301 -~~vli---~G~~~pivG~isM--D~~~vdv~-~~~~vGD~V~l~G~~ 341 (395) T 3hur_A 301 -SSVII---NGKRMPIIGRITM--DQTMVKLD-RKYPIGTRVTLIGKD 341 (395) T ss_dssp -EEEEE---TTEEEEBCSCCCS--SCEEEECS-SCCCTTCEEEEEESS T ss_pred -CEEEE---CCEEEEEEEEECC--CEEEEECC-CCCCCCCEEEEEECC T ss_conf -87999---9999898618834--52899898-999999999999589 No 33 >2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Probab=99.06 E-value=4.9e-07 Score=64.51 Aligned_cols=271 Identities=13% Similarity=0.091 Sum_probs=150.4 Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECCCC Q ss_conf 977999999999999985336986999541059----999999998518-7489807999989873-6880108853777 Q gi|254780741|r 8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNVAY 81 (367) Q Consensus 8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~~~ 81 (367) -.|.+.|++|++.++.... +.+++--+|||. ...|.+.+.+.| +.|-|+++.|....++ |.....+++++.. T Consensus 7 ~IdL~al~~N~~~i~~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~Ea~~LR~~g~~~~Ilil~~~~ 84 (361) T 2dy3_A 7 KIDLDAIAHNTRVLKQMAG--PAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCWIWTP 84 (361) T ss_dssp EECHHHHHHHHHHHHHHHT--TSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECCCCT T ss_pred EEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCCC T ss_conf 9859999999999985679--98499999455463789999999998694999983299999999738999768755887 Q ss_pred CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----- Q ss_conf 80347886138868985672059999998612345--61489963577443101245578643574278888743----- Q gi|254780741|r 82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----- 154 (367) Q Consensus 82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----- 154 (367) +++++.+.+....+.+-|..++..+.. ..+. +|-|-| +|| .+|+|+..+++.+.. T Consensus 85 -~~~~~~~~~~~~~~~v~s~~~~~~~~~---~~~~~~~vhLkv------------DTG--M~RlG~~~~e~~~~~~~~~~ 146 (361) T 2dy3_A 85 -EQDFRAAIDRNIDLAVISPAHAKALIE---TDAEHIRVSIKI------------DSG--LHRSGVDEQEWEGVFSALAA 146 (361) T ss_dssp -TSCHHHHHTTTCEEEECSHHHHHHHHT---SCCSCEEEEEEB------------CCS--SCSSSBCHHHHHHHHHHHHT T ss_pred -HHHHHHHHHHCCCEEECCHHHHHHHHH---HHCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHH T ss_conf -488999997277415502899899999---727886499998------------789--97679897999998999874 Q ss_pred --HCCCEEEEECCCCCC-CCHHHHHHHHHHHHH---HHHHCCCCC-------------------EEEEECCCCCCCCCCC Q ss_conf --149606653056566-614789999999998---986508875-------------------0875337766644556 Q gi|254780741|r 155 --IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEK---EFGHFITQI-------------------EWISLGGGIHFTDKDY 209 (367) Q Consensus 155 --~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~---~~~~~~~~l-------------------~~idiGGG~~~~~~~~ 209 (367) ...+.|+..|..+-. .+.....+.++...+ .+.+.+... +++-.|-+++.-.+.. T Consensus 147 ~~~l~~~gi~tH~a~ad~~d~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~Gi~lYG~~~~~ 226 (361) T 2dy3_A 147 APHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVA 226 (361) T ss_dssp CTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGGGCTTEECCCGGGGTCCSST T ss_pred CCCCCEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCHHCCCEEECCEEEECCCCCC T ss_conf 35611320123540468765526899999999999998752786405565153666539410166230140476667775 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCC Q ss_conf 80789999998754216504530022014574188878878630-------44-3--------33433335656566400 Q gi|254780741|r 210 PVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYL 273 (367) Q Consensus 210 ~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~ 273 (367) +.. .-.-++..+-++|+.+|+ ++ . ..+++..|-.+-++-.+ T Consensus 227 ----------------~~~-------~~l~pv~~l~a~i~~vr~~~~G~~vgYg~~~~~~~~~~ia~i~iGYaDG~~r~~ 283 (361) T 2dy3_A 227 ----------------GLE-------HGLKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHA 283 (361) T ss_dssp ----------------TCC-------CSCCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGG T ss_pred ----------------CCC-------CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC T ss_conf ----------------423-------467853133321136799348986664543114777159997020346654213 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECC-CC-CCCCCCCEEEEECCCCHH Q ss_conf 1345530002478645998623336664552135-66-778879899996887022 Q gi|254780741|r 274 LYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFH-FE-KPVKIGDRISFEDVAGYN 327 (367) Q Consensus 274 ~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~-~~-~~l~~GD~l~i~~~GAY~ 327 (367) .. ...+.. ....+-|.|..|+ |.+.-+. .. ..+++||.+.+..--+.+ T Consensus 284 ~~-~~~v~i---~g~~~pivGrvsM--D~~~vdvt~~~~~~~~Gd~V~l~G~~~~~ 333 (361) T 2dy3_A 284 QG-KFSVTI---DGLDYPQVGRVCM--DQFVISLGDNPHGVEAGAKAVIFGENGHD 333 (361) T ss_dssp TT-TCEEEE---TTEEEEEESCCCS--SCEEEEEETCTTCCCTTCEEEEESTTSCC T ss_pred CC-CCEEEE---CCEEEEEEEEECC--CEEEEECCCCCCCCCCCCEEEEECCCCCC T ss_conf 79-837998---9999117648537--61799866884558999999997899999 No 34 >1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli} Probab=95.32 E-value=0.15 Score=28.41 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=93.5 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HH--H-C-CCCCCCEEE-CCCCCHHHHHHHHCCCCEE-EECC Q ss_conf 6986999541059999999998518748980799998-98--7-3-688010885-3777803478861388689-8567 Q gi|254780741|r 28 AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LG--H-E-KFGGETHAY-NVAYKDCEIDAVLSNCDTI-IFNT 100 (367) Q Consensus 28 ~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la--~-~-g~~~~~i~~-~~~~~~~el~~a~~~~~~i-~iDs 100 (367) ..+++.=..|.-|...|........-.|-=.=..|+. .+ . + ..+.-+-.| ++ .-..-+..++.....| ++|| T Consensus 27 ~~V~LiaVsK~~~~e~I~~a~~~G~r~fGENrvQE~~~K~~~l~~~~~~~i~WHfIG~-LQsNKvk~iv~~~~~IhSVDs 105 (234) T 1w8g_A 27 EEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGP-LQSNKSRLVAEHFDWCHTIDR 105 (234) T ss_dssp GGCEEEEECTTSCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEECSC-CCGGGHHHHHHHCSEEEEECS T ss_pred CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHCCCCCEEHHHHH T ss_conf 8769999989989999999998699714687418999999998751588806998257-410127661332110103102 Q ss_pred CHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHCCCEEEEECCCCCCCC Q ss_conf 2059999998612345--6148996357744310124557864357427888874-------314960665305656661 Q gi|254780741|r 101 VSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EIKNVNGLMFHNNCENKS 171 (367) Q Consensus 101 ~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~~~i~Gih~H~gs~~~~ 171 (367) +.-.++|...+...+. +|+|-||. +...+|.|+..+++.+. ...++.||.+- ++...+ T Consensus 106 ~kla~~l~~~~~~~~~~~~vliQVNi------------s~E~~K~G~~p~e~~~~~~~~~~~~~l~~~GLMti-~~~~~d 172 (234) T 1w8g_A 106 LRIATRLNDQRPAELPPLNVLIQINI------------SDENSKSGIQLAELDELAAAVAELPRLRLRGLMAI-PAPESE 172 (234) T ss_dssp HHHHHHHHHHSCTTSCCEEEEEEECC------------SCTTCCCSBCGGGHHHHHHHHHTCTTEEEEEEEEC-CCCCCC T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE-CCCCCC T ss_conf 77999998543542687518999813------------77656678527779999999986799756788643-798402 Q ss_pred HHHHHHHHHHHHHHHHH---CCCCCEEEEECC Q ss_conf 47899999999989865---088750875337 Q gi|254780741|r 172 FLCFSAMLKNIEKEFGH---FITQIEWISLGG 200 (367) Q Consensus 172 ~~~~~~~l~~~~~~~~~---~~~~l~~idiGG 200 (367) .......+..+.+++.+ ....+..|..|= T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~LSMGM 204 (234) T 1w8g_A 173 YVRQFEVARQMAVAFAGLKTRYPHIDTLSLGM 204 (234) T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCEEECCC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC T ss_conf 78999999999999999873279989667720 No 35 >3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Probab=95.24 E-value=0.16 Score=28.24 Aligned_cols=176 Identities=16% Similarity=0.125 Sum_probs=100.4 Q ss_pred HHHHHHHHHHHHHHH----HH-----CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HHHC--------CC-- Q ss_conf 999999999999985----33-----6986999541059999999998518748980799998-9873--------68-- Q gi|254780741|r 11 KQKLLNNLDTALYIR----KN-----AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LGHE--------KF-- 70 (367) Q Consensus 11 ~~~i~~n~~~~~~~~----~~-----~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la~~--------g~-- 70 (367) .+.|++|+++++.-. .. ..+++.=..|.-|...|..++....-.|-=.=..|+. .+.+ ++ T Consensus 22 ~~~i~~nl~~V~~rI~~A~~~agR~p~~V~LiAVSK~~p~e~I~~a~~~G~r~FGENrvQE~~~K~~~l~~~~~~~~~~~ 101 (282) T 3cpg_A 22 AREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSL 101 (282) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEE T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999999999999999999829893665999998998999999999869970368708999999999876410001222 Q ss_pred ---------C-CC-CEEECCCCCHHHHHHHHCCCCEE-EECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCC Q ss_conf ---------8-01-08853777803478861388689-85672059999998612345--61489963577443101245 Q gi|254780741|r 71 ---------G-GE-THAYNVAYKDCEIDAVLSNCDTI-IFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADP 136 (367) Q Consensus 71 ---------~-~~-~i~~~~~~~~~el~~a~~~~~~i-~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~ 136 (367) . ++ +--|=|..-..-++.++.....| ++||+..+++|...+...+. +|+|-||- T Consensus 102 ~~~~~~~~~~~~~I~WHfIG~LQsNKvk~iv~~~~~IhSVDs~kla~~l~~~a~~~~~~~~vlIQVNi------------ 169 (282) T 3cpg_A 102 GVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNE------------ 169 (282) T ss_dssp CCC------CCEEECEEECSCCCGGGHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCC------------ T ss_pred CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECC------------ T ss_conf 22234444567772699944642000777651064665425643058899887624766169999625------------ Q ss_pred CCCCCCCCCCHHHHHHH-------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH----HCC---CCCEEEEEC Q ss_conf 57864357427888874-------3149606653056566614789999999998986----508---875087533 Q gi|254780741|r 137 NRPFSRLGEKCKDKIES-------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG----HFI---TQIEWISLG 199 (367) Q Consensus 137 ~~~~skfG~~~~~~~~~-------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~----~~~---~~l~~idiG 199 (367) ++..+|.|+..+++.+. ...++.||.+- +....+..........+.++++ ... ..+..|..| T Consensus 170 s~E~sK~G~~p~e~~~l~~~i~~~~~l~l~GLMti-~p~~~d~~~~r~~F~~l~~l~d~l~~~~~~~~~~~~~LSMG 245 (282) T 3cpg_A 170 SGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTI-GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMG 245 (282) T ss_dssp SSCTTSSSBCGGGHHHHHHHHHTCTTEEEEEEECC-CCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECC T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECH T ss_conf 87756688787779999999865100102217863-68888877899999999999999998568877998988170 No 36 >1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B Probab=90.35 E-value=0.86 Score=23.38 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=46.2 Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE Q ss_conf 786459986233366645521356677887989999688702232434768998877999967990999973 Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE 356 (367) Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~ 356 (367) +.-+||.+-|+-. |+.+-..-.--...++||.++|..-+-+.......| .|.++++++++.+.-+|+ T Consensus 29 ~Rf~TYvI~g~~g-Sg~I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vde~N~i~~i~~ 95 (96) T 1vc3_B 29 ARLTTYALPGERG-SGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNL----KPTVVLVDERNRILEVRK 95 (96) T ss_dssp CEEEEECEEECTT-TTCEEEEGGGGGTCCTTCEEEEEEEEEECHHHHTTC----CCEEEEECTTCCEEEEEE T ss_pred CEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEEEC T ss_conf 5888999972488-764874678873479999999998773798896268----777999999998998526 No 37 >1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 1aw8_B 1aw8_E 1pyu_A 1aw8_A Probab=81.80 E-value=2.4 Score=20.44 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=44.3 Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE Q ss_conf 786459986233366645521356677887989999688702232434768998877999967990999973 Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE 356 (367) Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~ 356 (367) +.-++|.|-|+-= |+.+-..-.--...++||.|+|..-+-+.......| .|.++++++++.+.-++. T Consensus 70 ~Rf~TYvI~g~~g-Sg~I~lNGAAAr~~~~GD~vII~sYa~~~~~e~~~~----~P~vv~vde~N~i~~~~~ 136 (143) T 1pqh_A 70 KRFSTYAIAAERG-SRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTW----RPNVAYFEGDNEMKRTAK 136 (143) T ss_dssp CEEEEEEEEECTT-CCCEECCGGGGGTCCTTCEEEEEEEEEEEHHHHTTC----CCEEEEEETTTEECC--- T ss_pred CEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEECC T ss_conf 7799999963588-875874688885479999999998865896685278----766999999998868336 No 38 >2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis} Probab=81.68 E-value=2.4 Score=20.41 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=46.2 Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE Q ss_conf 786459986233366645521356677887989999688702232434768998877999967990999973 Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE 356 (367) Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~ 356 (367) +.-++|.+-|+- -|+.+-..-.--...++||.++|..-+-+.......| .|.++++++++.+.-+++ T Consensus 53 ~Rf~TYvI~g~~-gSg~I~lNGaAA~~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i~~~~~ 119 (139) T 2c45_A 53 ARLVTYAITGER-GSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTY----QPRIVFVDAYNKPIDMGH 119 (139) T ss_dssp CEEEECEEEECT-TTTCEEEESSTTTTSCTTCEEEEEECCEEEHHHHHSC----CCEEEECCTTCC------ T ss_pred CEEEEEEEECCC-CCCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEECC T ss_conf 588999987688-8852763667874469999999998774798897268----777999899998878467 No 39 >1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A Probab=81.24 E-value=2.5 Score=20.31 Aligned_cols=64 Identities=20% Similarity=0.209 Sum_probs=43.2 Q ss_pred CCCCEEEEEECCCCCCCCEEEEC-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEE Q ss_conf 47864599862333666455213-566778879899996887022324347689988779999679909999 Q gi|254780741|r 284 NTGPYTAMVCGRSCLAGDIFGEF-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAI 354 (367) Q Consensus 284 ~~~~~~~~v~G~~C~~~D~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~ 354 (367) .+.-+||.+-|+- |+. ++-+ .--...++||.++|..-+-+.......| .|.++++++++.+.-. T Consensus 27 G~Rf~TYvI~g~~--sg~-I~lNGaAAr~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i~~~ 91 (97) T 1uhe_A 27 GERFSTYVILGKK--RGE-ICVNGAAARKVAIGDVVIILAYASMNEDEINAH----KPSIVLVDEKNEILEK 91 (97) T ss_dssp CCEEEEECEEECS--TTC-EEEEGGGGGGCCTTCEEEEEEEEEECHHHHHHC----CCEEEEECTTSCEEEE T ss_pred CCEEEEEEEECCC--CCE-EEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEC T ss_conf 9588989983278--887-987878983479999999998764798898348----8779998999967141 No 40 >1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Probab=66.47 E-value=5.1 Score=18.27 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=22.2 Q ss_pred EEEEHHHHHHHHHHHHHH---HHH-----CCCEEEEEEECC--CCHHHHHHHHHHC Q ss_conf 897799999999999998---533-----698699954105--9999999998518 Q gi|254780741|r 7 YLIDKQKLLNNLDTALYI---RKN-----AGVKLLLALKCF--AAWGMFDTLNQYM 52 (367) Q Consensus 7 yv~d~~~i~~n~~~~~~~---~~~-----~~~~i~yA~KaN--~~~~il~~l~~~g 52 (367) .||+...|.+++.....- ++. ....+.|++|-. ....+|+.+.+.+ T Consensus 4 ~~~~~~vla~~i~D~~~~~~~i~~~~~~~~ktSiiFSLkd~vGsLaraLkvFe~~~ 59 (429) T 1phz_A 4 VVLENGVLSRKLSDFGQETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEEND 59 (429) T ss_dssp ---------------CCCCSCCCCCCCSSCCEEEEEEEECCTTHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC T ss_conf 44222256666765136777216787878608999996876158999999999869 No 41 >1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, pterin CO-substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A* Probab=57.98 E-value=8.2 Score=16.93 Aligned_cols=10 Identities=20% Similarity=0.518 Sum_probs=3.2 Q ss_pred CCCHHHHHHH Q ss_conf 6720599999 Q gi|254780741|r 99 NTVSQLNKFK 108 (367) Q Consensus 99 Ds~~El~~i~ 108 (367) |++-+|+.+. T Consensus 113 d~IPql~dvs 122 (343) T 1toh_A 113 DSIPQLEDVS 122 (343) T ss_dssp TBCCCHHHHH T ss_pred CCCCCHHHHH T ss_conf 6799989999 No 42 >2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583} Probab=48.09 E-value=10 Score=16.28 Aligned_cols=33 Identities=9% Similarity=-0.000 Sum_probs=20.5 Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEC Q ss_conf 78645998623336664552135667788798999968 Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFED 322 (367) Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~ 322 (367) +......|+|..+++. -.+++-+++|+..-|.. T Consensus 327 p~d~r~NVVG~I~~ed-----~~LLd~I~p~~~Fk~i~ 359 (372) T 2p0o_A 327 PKDEKVNTITRIIDKD-----QTILPLIKAGNQFTLVT 359 (372) T ss_dssp CCCTTEEEEEEBCGGG-----GGGGGGCCTTCEEEEEE T ss_pred CCCCCEEEEEEECHHH-----HHHHHHCCCCCEEEEEE T ss_conf 8999755679988888-----87998558998289998 No 43 >2prv_A Uncharacterized protein YOBK; NP_389780.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1 Probab=42.45 E-value=14 Score=15.35 Aligned_cols=52 Identities=10% Similarity=-0.051 Sum_probs=31.9 Q ss_pred CCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHC Q ss_conf 9899996887022324347689988779999679909999738989998742 Q gi|254780741|r 315 GDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNNL 366 (367) Q Consensus 315 GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~~ 366 (367) ..+++|.+.|...+.+-..-.....+.++++..+.........||.+++.++ T Consensus 86 ~~~i~i~~~~g~~~~~d~~~~~~~e~~V~~~d~~~~~~~~va~sF~efL~~~ 137 (153) T 2prv_A 86 DGLVVIEDVDYFAYCLDTNKMKDGECPVVEWDRVIGYQDTVADSFIEFFYNK 137 (153) T ss_dssp TTEEEEEECSSEEEEEETTSCBTTBCCEEEEETTTEEEEEEESSHHHHHHHH T ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEHHCHHHHHHHH T ss_conf 7638997189977998713576787757999758980777101899999999 No 44 >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A Probab=42.24 E-value=14 Score=15.32 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=9.1 Q ss_pred HHHHHHCCCEEEEEH Q ss_conf 987542165045300 Q gi|254780741|r 219 KEFSEKYSVQIYLEP 233 (367) Q Consensus 219 ~~~~~~~~~~l~iEP 233 (367) .+..+++++++.+|| T Consensus 129 ~~~a~~~gv~l~iE~ 143 (278) T 1i60_A 129 SDIAEPYGVKIALEF 143 (278) T ss_dssp HHHHGGGTCEEEEEC T ss_pred HHHHHHHCCCEEEEE T ss_conf 999986198448984 No 45 >3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp} Probab=37.39 E-value=17 Score=14.84 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=36.5 Q ss_pred CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC Q ss_conf 7864599862333666455213566778879899996887022324347689988779999679 Q gi|254780741|r 285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD 348 (367) Q Consensus 285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~ 348 (367) +.-++|.+-|+- -|+++-..-.--...++||.|+|. +|+..-... -.+ .|.+++++++ T Consensus 56 ~Rf~TYvI~g~~-gSg~I~lNGaAArl~~~GD~vII~---sya~~~~~~-~~~-~P~vv~~de~ 113 (114) T 3oug_A 56 ERLETYVIKGEP-NSKTIALNGPAARRCEIGDQLFII---SYTQVDPTR-ENI-KPKLVDLKTG 113 (114) T ss_dssp CEEEEEEEEECT-TSCCEEEEGGGGGGCCTTCEEEEE---EEEEECTTS-CCC-CCEEEECC-- T ss_pred CEEEEEEEECCC-CCCEEEECCHHHHCCCCCCEEEEE---ECCCCCHHH-HCC-CCEEEEECCC T ss_conf 389989997479-975686276786206999999999---874178479-679-8769996899 No 46 >1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6 Probab=34.61 E-value=19 Score=14.55 Aligned_cols=116 Identities=14% Similarity=0.224 Sum_probs=47.7 Q ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHHCCCEEE-EECCC-CCCCCHHH Q ss_conf 67205999999861234561489963577443101245578643574278888--7431496066-53056-56661478 Q gi|254780741|r 99 NTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI--ESEIKNVNGL-MFHNN-CENKSFLC 174 (367) Q Consensus 99 Ds~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~--~~~~~~i~Gi-h~H~g-s~~~~~~~ 174 (367) =|.+|+..|.+.|+.. +|||-|.+..++|... +.-...+.. ........+. .-++. +.....+. T Consensus 92 YT~~di~eiv~yA~~r----gI~VIPEiD~PGH~~~--------~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f 159 (367) T 1yht_A 92 LSYRQLDDIKAYAKAK----GIELIPELDSPNHMTA--------IFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITF 159 (367) T ss_dssp BCHHHHHHHHHHHHHT----TCEEEEEEEESSSCHH--------HHHHHHHHHCHHHHHHHBCSSCTTSBCTTCHHHHHH T ss_pred CCHHHHHHHHHHHHHC----CCEEEECCCCHHHHHH--------HHHHCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 4899999999999986----9889754776057999--------998470530787655677777786457788889999 Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCC-CCCC-CCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 999999999898650887508753377-6664-455680789999998754216504 Q gi|254780741|r 175 FSAMLKNIEKEFGHFITQIEWISLGGG-IHFT-DKDYPVKDFCQRLKEFSEKYSVQI 229 (367) Q Consensus 175 ~~~~l~~~~~~~~~~~~~l~~idiGGG-~~~~-~~~~~~~~~~~~i~~~~~~~~~~l 229 (367) +..+++.+.++|. ...++++|||- .... ....+...+.+.+.++.++++.+. T Consensus 160 i~~v~~e~~~~F~---~~s~~iHiGgDE~~~~~~~~~~~~~~~~~~~~~v~~~gk~~ 213 (367) T 1yht_A 160 MQSLMSEVIDIFG---DTSQHFHIGGDEFGYSVESNHEFITYANKLSYFLEKKGLKT 213 (367) T ss_dssp HHHHHHHHHHHHG---GGCSEEEEECCSCCTTSCCHHHHHHHHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHHCC---CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 9999999998637---86554784355455453654189999999999999779989 No 47 >2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomics, PSI, protein structure initiative; 1.57A {Enterococcus faecalis V583} SCOP: b.161.1.1 Probab=33.70 E-value=19 Score=14.46 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=20.5 Q ss_pred CCCCEEEECCCCCCCCCCCEEEEECCCC Q ss_conf 6664552135667788798999968870 Q gi|254780741|r 298 LAGDIFGEFHFEKPVKIGDRISFEDVAG 325 (367) Q Consensus 298 ~~~D~l~~~~~~~~l~~GD~l~i~~~GA 325 (367) .++.+..+...+|++++||.+.|.--|| T Consensus 102 LPG~I~v~~~~~P~i~vG~~I~~i~~~~ 129 (129) T 2f9h_A 102 IRNGVYLTPHQLPKITIGTTIDYLVNGA 129 (129) T ss_dssp CTTEEEEESCSCCCCCTTCEEEEEC--- T ss_pred CCCEEEECCCCCCCCCCCCEEEEEECCC T ss_conf 8986998878899788999999986689 No 48 >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Probab=31.00 E-value=21 Score=14.17 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=4.5 Q ss_pred HHHHHHHHHHHH Q ss_conf 789999999998 Q gi|254780741|r 173 LCFSAMLKNIEK 184 (367) Q Consensus 173 ~~~~~~l~~~~~ 184 (367) +.+.+.++.+.+ T Consensus 176 ~~~~~ll~~~~~ 187 (354) T 3cyv_A 176 QALHALLDKLAK 187 (354) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 No 49 >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Probab=27.88 E-value=24 Score=13.82 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=15.4 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHH Q ss_conf 66530565666147899999999989 Q gi|254780741|r 160 GLMFHNNCENKSFLCFSAMLKNIEKE 185 (367) Q Consensus 160 Gih~H~gs~~~~~~~~~~~l~~~~~~ 185 (367) .+-+-.|---+..+.|.+.++.+.++ T Consensus 207 ~~DLI~GlPgqt~e~~~~tl~~~~~l 232 (457) T 1olt_A 207 NIDLIYGLPKQTPESFAFTLKRVAEL 232 (457) T ss_dssp EEEEEESCTTCCHHHHHHHHHHHHHH T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 23315779983377888899888840 No 50 >2vef_A Dihydropteroate synthase; antibiotic resistance, folic acid, transferase, biosynthesis, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* Probab=27.32 E-value=25 Score=13.76 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=12.0 Q ss_pred CCCCEEEEEEEEEEECCCC Q ss_conf 4574188878878630443 Q gi|254780741|r 238 VTNTTTLNTTVLDISENIK 256 (367) Q Consensus 238 v~~ag~lv~~V~~~K~~~~ 256 (367) ....|.-+.||-|+|++.. T Consensus 273 a~~~Ga~iiRVHDV~e~~~ 291 (314) T 2vef_A 273 AARQGVEVVRVHDVASHRM 291 (314) T ss_dssp HHHTTCSEEEESCHHHHHH T ss_pred HHHCCCCEEEECCHHHHHH T ss_conf 9987998999389799999 No 51 >2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1 Probab=25.73 E-value=26 Score=13.61 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=10.1 Q ss_pred CCCCCCCCCEEEEEC Q ss_conf 667788798999968 Q gi|254780741|r 308 FEKPVKIGDRISFED 322 (367) Q Consensus 308 ~~~~l~~GD~l~i~~ 322 (367) ..|++++|||++++- T Consensus 38 ~~~~~~vGDyVLVH~ 52 (90) T 2ot2_A 38 ENGQPRVGQWVLVHV 52 (90) T ss_dssp TTSCBCTTCEEEEET T ss_pred CCCCCCCCCEEEEEC T ss_conf 776467788999961 No 52 >1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A* Probab=24.00 E-value=28 Score=13.36 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=22.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 478999999999898650887508753377 Q gi|254780741|r 172 FLCFSAMLKNIEKEFGHFITQIEWISLGGG 201 (367) Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~l~~idiGGG 201 (367) +..+.++++.+.+++.+-+...++++|||- T Consensus 483 ~~Fl~~Vi~Ev~~lF~~a~~p~~~iHiGGD 512 (858) T 1c7s_A 483 QRFVDKVIGEIAQMHKEAGQPIKTWHFGGA 512 (858) T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSCEEEECC T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 889999999999860002688876997875 No 53 >1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A* Probab=21.85 E-value=31 Score=13.09 Aligned_cols=44 Identities=9% Similarity=0.084 Sum_probs=17.2 Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC Q ss_conf 66530565666147899999999989865088750875337766644 Q gi|254780741|r 160 GLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTD 206 (367) Q Consensus 160 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~ 206 (367) ++++|.++|. ....+..+..+..+-.+ ...+..-++||||+... T Consensus 759 ~l~V~~sTQ~--p~~~r~~vA~~Lgip~~-~V~V~~~~vGGgFG~K~ 802 (1332) T 1v97_A 759 EMELFVSTQN--AMKTQSFVAKMLGVPVN-RILVRVKRMGGGFGGKE 802 (1332) T ss_dssp CEEEEECCSC--HHHHHHHHHHHHTSCGG-GEEEEECCCSCCTTTTS T ss_pred EEEEEECCCC--HHHHHHHHHHHHCCCHH-HEEEEECCCCCCCCCCC T ss_conf 5999989968--99999999999789889-98999188886988888 No 54 >2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1 Probab=21.64 E-value=32 Score=13.06 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=11.5 Q ss_pred CCCCCCCCCCEEEEEC Q ss_conf 5667788798999968 Q gi|254780741|r 307 HFEKPVKIGDRISFED 322 (367) Q Consensus 307 ~~~~~l~~GD~l~i~~ 322 (367) .+.|++++|||++++- T Consensus 31 ~lv~~~~vGDyVLVH~ 46 (75) T 2z1c_A 31 DLMPDTKPGDWVIVHT 46 (75) T ss_dssp TTSTTCCTTCEEEEET T ss_pred EEECCCCCCCEEEEEE T ss_conf 8608999998999940 Done!