Query         gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 367
No_of_seqs    119 out of 2648
Neff          7.8 
Searched_HMMs 23785
Date          Mon May 30 14:02:27 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780741.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3mt1_A Putative carboxynorsper 100.0       0       0  650.7  31.4  364    1-367     1-365 (365)
  2 3n29_A Carboxynorspermidine de 100.0       0       0  630.2  31.3  361    2-365    42-417 (418)
  3 3n2b_A Diaminopimelate decarbo 100.0       0       0  596.8  32.8  363    2-366    50-436 (441)
  4 2p3e_A Diaminopimelate decarbo 100.0       0       0  577.8  35.1  361    3-366    33-417 (420)
  5 2qgh_A Diaminopimelate decarbo 100.0       0       0  568.6  34.6  364    2-366    31-418 (425)
  6 2yxx_A Diaminopimelate decarbo 100.0       0       0  559.2  34.6  361    3-366    12-384 (386)
  7 1twi_A Diaminopimelate decarbo 100.0       0       0  557.4  35.0  363    3-366    29-427 (434)
  8 2j66_A BTRK, decarboxylase; bu 100.0       0       0  550.7  36.5  362    2-366    15-416 (428)
  9 2o0t_A Diaminopimelate decarbo 100.0       0       0  553.4  31.9  361    3-365    41-446 (467)
 10 1knw_A Diaminopimelate decarbo 100.0       0       0  547.7  33.4  355    3-366    25-418 (425)
 11 2oo0_A ODC, ornithine decarbox 100.0       0       0  544.7  29.1  350    3-362    47-436 (471)
 12 7odc_A Protein (ornithine deca 100.0       0       0  542.3  28.4  349    2-360    36-424 (424)
 13 1f3t_A ODC, ornithine decarbox 100.0       0       0  539.9  30.1  348    3-360    37-424 (425)
 14 3btn_A Antizyme inhibitor 1; T 100.0       0       0  537.0  24.4  351    3-365    37-427 (448)
 15 2plj_A Lysine/ornithine decarb 100.0       0       0  525.6  30.9  335    3-347    54-409 (419)
 16 2nva_A Arginine decarboxylase, 100.0       0       0  502.4  31.4  333    3-345    16-372 (372)
 17 3nzp_A Arginine decarboxylase; 100.0       0       0  432.8  33.9  363    2-366    43-563 (619)
 18 3nzq_A ADC, biosynthetic argin 100.0       0       0  409.1  36.0  364    2-366    84-613 (666)
 19 3n2o_A ADC, biosynthetic argin 100.0       0       0  401.4  33.5  364    2-366    62-596 (648)
 20 3gwq_A D-serine deaminase; YP_  99.8 6.4E-17 2.7E-21  129.6  31.3  317    2-351    44-418 (426)
 21 3llx_A Predicted amino acid al  99.7 7.7E-15 3.2E-19  116.0  24.6  311    2-349    12-365 (376)
 22 1vfs_A Alanine racemase; TIM-b  99.6 1.6E-11 6.8E-16   94.1  27.0  292    3-323     5-341 (386)
 23 1rcq_A Catabolic alanine racem  99.4 2.6E-10 1.1E-14   86.1  22.9  290    6-324     5-326 (357)
 24 1bd0_A Alanine racemase; isome  99.4 8.5E-10 3.6E-14   82.7  25.3  304    5-355     7-378 (388)
 25 3e5p_A Alanine racemase; ALR,   99.4 6.3E-10 2.6E-14   83.6  24.0  277    5-322     8-335 (371)
 26 3kw3_A Alanine racemase; niaid  99.4 1.6E-09 6.9E-14   80.8  25.9  291    6-323    22-345 (376)
 27 3co8_A Alanine racemase; prote  99.4 1.4E-09 5.8E-14   81.3  24.3  289    4-324     8-337 (380)
 28 2rjg_A Alanine racemase; alpha  99.4 1.5E-09 6.2E-14   81.1  23.8  292    4-324    23-348 (379)
 29 2vd8_A Alanine racemase; pyrid  99.4 1.6E-08 6.7E-13   74.3  29.0  316    7-354    14-384 (391)
 30 3oo2_A Alanine racemase 1; inf  99.4 3.8E-09 1.6E-13   78.4  24.9  290    5-324    11-338 (385)
 31 1xfc_A Alanine racemase; alpha  99.3 8.5E-09 3.6E-13   76.1  24.9  289    7-324    14-345 (384)
 32 3hur_A Alanine racemase; struc  99.3   3E-09 1.3E-13   79.1  22.1  291    2-324     6-341 (395)
 33 2dy3_A Alanine racemase; alpha  99.1 4.9E-07 2.1E-11   64.5  23.7  271    8-327     7-333 (361)
 34 1w8g_A YGGS, hypothetical UPF0  95.3    0.15 6.2E-06   28.4  18.5  159   28-200    27-204 (234)
 35 3cpg_A Uncharacterized protein  95.2    0.16 6.6E-06   28.2  16.9  176   11-199    22-245 (282)
 36 1vc3_B L-aspartate-alpha-decar  90.4    0.86 3.6E-05   23.4   6.9   67  285-356    29-95  (96)
 37 1pqh_A Aspartate 1-decarboxyla  81.8     2.4  0.0001   20.4   5.6   67  285-356    70-136 (143)
 38 2c45_A Aspartate 1-decarboxyla  81.7     2.4  0.0001   20.4   5.8   67  285-356    53-119 (139)
 39 1uhe_A Aspartate 1-decarboxyla  81.2     2.5 0.00011   20.3   5.8   64  284-354    27-91  (97)
 40 1phz_A Protein (phenylalanine   66.5     5.1 0.00021   18.3   3.7   46    7-52      4-59  (429)
 41 1toh_A Tyroh, tyrosine hydroxy  58.0     8.2 0.00034   16.9   4.9   10   99-108   113-122 (343)
 42 2p0o_A Hypothetical protein DU  48.1      10 0.00043   16.3   2.7   33  285-322   327-359 (372)
 43 2prv_A Uncharacterized protein  42.4      14  0.0006   15.3   5.3   52  315-366    86-137 (153)
 44 1i60_A IOLI protein; beta barr  42.2      14  0.0006   15.3   7.8   15  219-233   129-143 (278)
 45 3oug_A Aspartate 1-decarboxyla  37.4      17 0.00071   14.8   5.7   58  285-348    56-113 (114)
 46 1yht_A DSPB; beta barrel, hydr  34.6      19 0.00079   14.6   5.1  116   99-229    92-213 (367)
 47 2f9h_A PTS system, IIA compone  33.7      19 0.00081   14.5   3.5   28  298-325   102-129 (129)
 48 3cyv_A URO-D, UPD, uroporphyri  31.0      21  0.0009   14.2   4.7   12  173-184   176-187 (354)
 49 1olt_A Oxygen-independent copr  27.9      24   0.001   13.8   4.6   26  160-185   207-232 (457)
 50 2vef_A Dihydropteroate synthas  27.3      25   0.001   13.8   2.9   19  238-256   273-291 (314)
 51 2ot2_A Hydrogenase isoenzymes   25.7      26  0.0011   13.6   1.8   15  308-322    38-52  (90)
 52 1c7s_A Beta-N-acetylhexosamini  24.0      28  0.0012   13.4   4.8   30  172-201   483-512 (858)
 53 1v97_A XD, xanthine dehydrogen  21.8      31  0.0013   13.1   3.8   44  160-206   759-802 (1332)
 54 2z1c_A Hydrogenase expression/  21.6      32  0.0013   13.1   2.2   16  307-322    31-46  (75)

No 1  
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=100.00  E-value=0  Score=650.68  Aligned_cols=364  Identities=57%  Similarity=0.986  Sum_probs=338.8

Q ss_pred             CCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECC
Q ss_conf             98885689779999999999999853369869995410599999999985187489807999989873-68801088537
Q gi|254780741|r    1 MIKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNV   79 (367)
Q Consensus         1 ~i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~   79 (367)
                      ||+|||||||++.|++|+++++.+++.++++++||+||||++.|++++++.|+|+||+|.+|+++|++ |+++.+|++ +
T Consensus         1 ~l~TP~yv~d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~vl~~l~~~g~g~dvaS~~El~~a~~~g~~~~~i~~-~   79 (365)
T 3mt1_A            1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRERFGKETHAYS-V   79 (365)
T ss_dssp             -CCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHTTTSCEEEESSHHHHHHHHHHTCSEEEEEE-S
T ss_pred             CCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHCCCCCCEEE-C
T ss_conf             999987997799999999999986512697899998316889999999980984996689999999965899661772-3


Q ss_pred             CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCE
Q ss_conf             77803478861388689856720599999986123456148996357744310124557864357427888874314960
Q gi|254780741|r   80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVN  159 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~  159 (367)
                      ++++++++.+++.+..|++||++||+++.+.++  +.+|+|||||+++..+++.++++.+.||||+...+..+....++.
T Consensus        80 ~~~~~~~~~~~~~g~~i~vDs~~El~~i~~~~~--~~~v~lRinp~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~~~~l~  157 (365)
T 3mt1_A           80 AYGDNEIDEVVSHADKIIFNSISQLERFADKAA--GIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRIN  157 (365)
T ss_dssp             CCCTTTHHHHHHHCSEEEESSHHHHHHHGGGGT--TSEEEEEECCC----------------CCSBCCHHHHHTTGGGCS
T ss_pred             CCCCCHHHHHHHCCCEEEEECHHHHHHHHHHHC--CCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             567409999997399899938889999998720--665689972466754423421678755431769999999873176


Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCC
Q ss_conf             66530565666147899999999989865088750875337766644556807899999987542165045300220145
Q gi|254780741|r  160 GLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVT  239 (367)
Q Consensus       160 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~  239 (367)
                      |+|||+|||+.+.+.|.+++..+.+.+.+++.++++|||||||++++++.+++.+++.+++..+++++++++|||||||+
T Consensus       158 g~h~H~gs~~~~~~~~~~~i~~~~~~~~~~~~~~~~idiGGGf~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva  237 (365)
T 3mt1_A          158 GFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASIT  237 (365)
T ss_dssp             EEEECCC--CCSHHHHHHHHHHHHHHHHHHHTTSSEEECCSCCCTTSTTCCHHHHHHHHHHHHHHHTCEEEECCSHHHHT
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCCCCEEHH
T ss_conf             47987587887578999999999999898689847898078767765102358999999999743145311477523400


Q ss_pred             CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEE
Q ss_conf             74188878878630443334333356565664001345530002478645998623336664552135667788798999
Q gi|254780741|r  240 NTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRIS  319 (367)
Q Consensus       240 ~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~  319 (367)
                      +||+++++|+++|+++++|+++|+|+++++++.+.+...+.+.++++.++|.|+||||+++|+|+++..+|++++||+|+
T Consensus       238 ~ag~lv~~V~~~k~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~lp~l~~GD~l~  317 (365)
T 3mt1_A          238 KSTTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRIS  317 (365)
T ss_dssp             TSEEEEEEEEEEEESSSEEEEESCCHHHHCHHHHHTTCCCCCSSCCSSEEEEEECSSCCSSCEEEEEEESSCCCTTCEEE
T ss_pred             CCEEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCEEE
T ss_conf             65699999999998985799825754456654334455212357777415633379888776881246578999999999


Q ss_pred             EECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHCC
Q ss_conf             968870223243476899887799996799099997389899987429
Q gi|254780741|r  320 FEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNNLS  367 (367)
Q Consensus       320 i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~~~  367 (367)
                      |.|+|||+++|+++||++|+|++|++++||+++++||||||||++|||
T Consensus       318 ~~~~GAY~~~~~s~Fn~~~~P~~v~~~~dg~~~~irr~~~~d~~~~~~  365 (365)
T 3mt1_A          318 FQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS  365 (365)
T ss_dssp             ESSCCTTSTTSCCCGGGCCCCEEEEECTTSCEEEEECCCHHHHHHHHC
T ss_pred             EECCCHHHHHHHCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHCC
T ss_conf             918844446661557899998799996799299995397899886557


No 2  
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=100.00  E-value=0  Score=630.20  Aligned_cols=361  Identities=38%  Similarity=0.679  Sum_probs=325.3

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCEEECCCC
Q ss_conf             88856897799999999999998533698699954105999999999851874898079999898736880108853777
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHEKFGGETHAYNVAY   81 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~g~~~~~i~~~~~~   81 (367)
                      ++|||||||++.|++|+++++.+++.++++++||+||||++.||++|++.|+|+||+|++|++++..+++++.|+++|++
T Consensus        42 ~~TP~yVyd~~~i~~n~~~l~~a~~~~~~~i~YAvKAN~~~~vl~~l~~~g~g~dv~S~~El~la~~~~~~~ii~~~p~k  121 (418)
T 3n29_A           42 IQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAF  121 (418)
T ss_dssp             CCSSEEEEEHHHHHHHHHHHHHHHHHHCCEEEEETTTCCCGGGHHHHHHHSCEEEESSHHHHHHHHHHTCSEEEEEESSC
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCEEEECCCC
T ss_conf             59998997699999999999987603798899996437998999999970992995299999985456998079949989


Q ss_pred             CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEE
Q ss_conf             80347886138868985672059999998612345614899635774431012455786435742788887431496066
Q gi|254780741|r   82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGL  161 (367)
Q Consensus        82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~i~Gi  161 (367)
                      +++|++.+++.+..|++||++||++|.+.++  ..+|+|||||+++.+.++.+++++..||||++.+++.+....++.|+
T Consensus       122 ~~~ei~~a~~~g~~i~~DS~~El~~i~~~~~--~~~v~lRvnp~~~~~~~~~~~~~g~~skfGi~~~~~~~~~~~~i~gl  199 (418)
T 3n29_A          122 KEDEIGEIASLSHHIVFNSLAQFHKFQSKTQ--KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGL  199 (418)
T ss_dssp             CHHHHHHHHHHCSEEEESSHHHHHHHGGGCT--TSEEEEEBCCCCC----------CTTCCSSBCGGGGTTCCCTTCCEE
T ss_pred             CHHHHHHHHHCCCEEEECCHHHHHHHHHHCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf             8999999998399899769899999997577--99589999358777877410146777634575788877776336403


Q ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCC
Q ss_conf             53056566614789999999998986508875087533776664455680789999998754216504530022014574
Q gi|254780741|r  162 MFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNT  241 (367)
Q Consensus       162 h~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~a  241 (367)
                      |||+||++. ...+.+.++.+.+.+++++.++++|||||||++++++++++++++.++++.+++++++|+||||||||+|
T Consensus       200 h~H~gs~~~-~~~l~~~~~~~~~~~~~~~~~l~~ldiGGGf~v~y~~~~~~~~~~~i~~~~~~~~~~liiEPGR~lva~a  278 (418)
T 3n29_A          200 HFHALCEES-ADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQT  278 (418)
T ss_dssp             ECCCCSSBC-HHHHHHHHHHHHHHHGGGTTTCSEEECCSCBCTTSTTCCHHHHHHHHHHHHHHHTCEEEECCSHHHHTTS
T ss_pred             EECCCCCCC-HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCEEEECCCC
T ss_conf             216786773-5899999999999999647774477615734667565699999999999987538864874530010373


Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCEEEEEECCCCCCCCEEEEC
Q ss_conf             1888788786304433343333565656640013455300---------------0247864599862333666455213
Q gi|254780741|r  242 TTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATI---------------YPNTGPYTAMVCGRSCLAGDIFGEF  306 (367)
Q Consensus       242 g~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~v~G~~C~~~D~l~~~  306 (367)
                      |++||+|+++|+++.+|+++|+|+.+++++.+++...+.+               .+.+..++|+|+||||+++|+|+++
T Consensus       279 g~lvt~V~~vK~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Gp~C~s~D~l~~~  358 (418)
T 3n29_A          279 GNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEY  358 (418)
T ss_dssp             EEEEEEEEEEEESSSEEEEESSCHHHHSHHHHHTTCCCCBTTEEEEECTTCCBCCCCCTTCEEEEEECSSSCTTCEEEEE
T ss_pred             EEEEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEC
T ss_conf             69999999995458648999786435784377630474313254445444433556678814899981798987598204


Q ss_pred             CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHH
Q ss_conf             56677887989999688702232434768998877999967990999973898999874
Q gi|254780741|r  307 HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNN  365 (367)
Q Consensus       307 ~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~  365 (367)
                      .++|++++||+|+|.|||||+++|+++||++|+|++|++++||++++||||||+||..|
T Consensus       359 ~~lp~l~~GD~l~~~~~GAY~~s~ss~FN~~p~Pa~vl~~~~g~~~~IR~~~~~d~~~r  417 (418)
T 3n29_A          359 AFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLDHKNELQMIREFSYKDYSLR  417 (418)
T ss_dssp             EESSCCCTTCEEEESSCSSSSGGGCCCGGGCCCCEEEEECTTSCEEEEECCCTHHHHTT
T ss_pred             CCCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHC
T ss_conf             76789999999999287544454523367999880999978995999962887777516


No 3  
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00  E-value=0  Score=596.84  Aligned_cols=363  Identities=17%  Similarity=0.187  Sum_probs=312.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C
Q ss_conf             888568977999999999999985336986999541059999999998518748980799998987-36880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~   79 (367)
                      .+|||||||++.|++|+++|+.+++..+.+++||+||||++.||++|++.|+|+||+|.+|+++|+ +|+++++|+|+ |
T Consensus        50 ~gTP~yvyd~~~i~~~~~~l~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~G~Dv~S~~El~~al~aG~~~~~Iv~~g~  129 (441)
T 3n2b_A           50 YGTPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGELERVLAAGGDPSKVVFSGV  129 (441)
T ss_dssp             HCSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCCCCEEECCC
T ss_conf             69988998799999999999987605899899996138989999999983993898699999999973999210486266


Q ss_pred             CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---
Q ss_conf             77803478861388-68985672059999998612345--6148996357744310124557864357427888874---
Q gi|254780741|r   80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---  153 (367)
Q Consensus        80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---  153 (367)
                      .|++++++.|++.+ ..+++||++||++|.+++++.+.  +|+|||||+++..++..+.+++..||||++.+++.+.   
T Consensus       130 ~K~~~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~skfGi~~~~~~~~~~~  209 (441)
T 3n2b_A          130 GKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRL  209 (441)
T ss_dssp             TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             79889999998624454344307799999988886199976999992588866663415687767667657889999997


Q ss_pred             ----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHH
Q ss_conf             ----314960665305656661478999999999898---65088750875337766644556----8078999999875
Q gi|254780741|r  154 ----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFS  222 (367)
Q Consensus       154 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~  222 (367)
                          ...++.|+|||+|||+.+.+.|.++++.+.+++   .+.+.++++||+||||+++|...    +............
T Consensus       210 ~~~~~~l~l~Glh~HiGSq~~~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiGGG~~~~y~~~~~~~~~~~~~~~~~~~~  289 (441)
T 3n2b_A          210 AHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLE  289 (441)
T ss_dssp             HHHCTTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCEEC-----CEECHHHHHHHHHHT
T ss_pred             HHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             51046826999995168763453899999999999999999709970046633775767775566224566665655540


Q ss_pred             HHCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCEEEEEECCCCC
Q ss_conf             42165045300220145741888788786304-43334333356565664001345530002---478645998623336
Q gi|254780741|r  223 EKYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP---NTGPYTAMVCGRSCL  298 (367)
Q Consensus       223 ~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~G~~C~  298 (367)
                      ...+++|++||||+||++||++||+|+++|++ +++|+++|+|++++++|+++..+++....   +....++.|+||+|+
T Consensus       290 ~~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~vivD~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~Gp~C~  369 (441)
T 3n2b_A          290 RHRDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPALYQAWQDIIPLRPRQGEAQTYDLVGPVCE  369 (441)
T ss_dssp             TTCCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEEEESCCTTTCCC-------CCEEESSCCSSCCEEEEEECSSSS
T ss_pred             CCCCCEEECCCCCCEECCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHCCCCCEECCCCCCCCCEEEEEEECCCC
T ss_conf             36671672077500333661799999998663982599993401100236664464312324578899428999811757


Q ss_pred             CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf             664552135667788798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r  299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL  366 (367)
Q Consensus       299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~  366 (367)
                      ++|+|+++..+| +++||+|+|.+||||+++|+|+||++|+|++|+++ +|+.++|| |||++|++++.
T Consensus       370 s~D~l~~~~~lp-l~~GD~lv~~~~GAY~~s~ssnfN~~p~p~~v~v~-~~~~~lir~re~~~dl~~~~  436 (441)
T 3n2b_A          370 TSDFLGKDRDLV-LQEGDLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD-GNKTYLVRQREELSSLWALE  436 (441)
T ss_dssp             TTCEEEEEEEEC-CCTTCEEEESSCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCGGGGGTTB
T ss_pred             CCCEEEECCCCC-CCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHCCC
T ss_conf             885993511168-99999999849474356563823389998589999-99899997899999996447


No 4  
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5}
Probab=100.00  E-value=0  Score=577.82  Aligned_cols=361  Identities=18%  Similarity=0.248  Sum_probs=309.8

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|++++++++  ++++++||+||||+|.|++++++.|+|+||+|.+|++++++ |+++++|+|+ |.
T Consensus        33 gTP~yv~d~~~i~~~~~~l~~~~--p~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~g~~  110 (420)
T 2p3e_A           33 GTPLYVYSSNFIKERFEAYRKAF--PDALICYAVKANFNPHLVKLLGELGAGADIVSGGELYLAKKAGIPPERIVYAGVG  110 (420)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHS--TTSEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECSSC
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             99889999999999999999868--9988999977689999999999809982897289999999817985677872434


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCC--CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----
Q ss_conf             7803478861388-6898567205999999861234--56148996357744310124557864357427888874----
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLH--KKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES----  153 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~--~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~----  153 (367)
                      |++++++.|++.+ ..+++||++|+++|...+++.+  .+|+|||||+.+...+....+++..||||++..+..+.    
T Consensus       111 k~~~~l~~a~~~gv~~~~~ds~~El~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~  190 (420)
T 2p3e_A          111 KTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYA  190 (420)
T ss_dssp             CCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             42045898987393373148989999999888733999479999815878666755357776555664403447889999


Q ss_pred             ---HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHHHHHHHHHH
Q ss_conf             ---314960665305656661478999999999898---65088750875337766644556----80789999998754
Q gi|254780741|r  154 ---EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFCQRLKEFSE  223 (367)
Q Consensus       154 ---~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~~~i~~~~~  223 (367)
                         ...++.|+|||+|||+.+.+.|.++++.+.+++   .+.+..+++|||||||++++...    +.+.+.+..+....
T Consensus       191 ~~~~~l~~~Glh~H~gS~~~~~~~~~~ai~~~~~l~~~~~~~g~~l~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (420)
T 2p3e_A          191 SKLENLEIVGIHCHIGSQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLE  270 (420)
T ss_dssp             HTCTTEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCCSTTCCCCCHHHHHHHHTTTC-
T ss_pred             HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             88459608898744766788848877678899999999997398856441258878656776544104668899999864


Q ss_pred             HCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEEEECCCCCC
Q ss_conf             2165045300220145741888788786304-4333433335656566400134553000---24786459986233366
Q gi|254780741|r  224 KYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY---PNTGPYTAMVCGRSCLA  299 (367)
Q Consensus       224 ~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~G~~C~~  299 (367)
                      ..+++|++|||||+|++||+++++|+++|++ +++|+++|+|+++++++.++..++....   .+....++.|+||||++
T Consensus       271 ~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~tC~~  350 (420)
T 2p3e_A          271 NVKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPVETKERKKVVADIVGPICET  350 (420)
T ss_dssp             -CCSEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHHCCCCCEEESBCCC---CEEEEECSSSST
T ss_pred             CCCCEEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEEEECCCCCCCCHHHHCCCCCEEEECCCCCCEEEEEEEECCCCC
T ss_conf             55978999047467513699999999998379827999957747755635514431112301578880589999768689


Q ss_pred             CCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf             64552135667788798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r  300 GDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL  366 (367)
Q Consensus       300 ~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~  366 (367)
                      +|+|+.+..+|++++||+|+|.|+|||+++|+++||++|+|++|+++ +|+.+++| |||+||++++.
T Consensus       351 ~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~Fn~~p~p~~v~v~-~g~~~lir~~et~ed~~~~~  417 (420)
T 2p3e_A          351 GDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRAAEVLVE-NGSVKLIRKRENYDYIVEPS  417 (420)
T ss_dssp             TCEEEEEEECCCCCTTCEEEECSCTTTTGGGCBCGGGCCCCEEEEEE-TTEEEEEECCCCHHHHHGGG
T ss_pred             CCEEEECCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHHC
T ss_conf             98992266378899999999979673245562733389988399998-99799997689999998634


No 5  
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00  E-value=0  Score=568.62  Aligned_cols=364  Identities=20%  Similarity=0.227  Sum_probs=309.7

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C
Q ss_conf             888568977999999999999985336986999541059999999998518748980799998987-36880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~   79 (367)
                      -+|||||||++.|++|+++++++++..+.+++||+||||++.|+++|.+.|+|+||+|++|+++|+ .|+++++|+|+ |
T Consensus        31 ~gTP~yv~d~~~l~~n~~~~~~a~~~~~~~i~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~Ii~~gp  110 (425)
T 2qgh_A           31 HKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGEIQRALKAGIKPYRIVFSGV  110 (425)
T ss_dssp             CCSSEEEEEHHHHHHHHHHHHHTTCSSCEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCT
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf             39988998699999999999985799997599997138999999999980993998299999999975998678464256


Q ss_pred             CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--
Q ss_conf             77803478861388-68985672059999998612345--61489963577443101245578643574278888743--
Q gi|254780741|r   80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE--  154 (367)
Q Consensus        80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~--  154 (367)
                      .|++++++.+...+ ..+++||++|+++|.+++++.+.  +|+|||||+++...+...+++.+.||||++..+..+..  
T Consensus       111 ~k~~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfg~~~~~~~~~~~~  190 (425)
T 2qgh_A          111 GKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLW  190 (425)
T ss_dssp             TCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             68889999887638200002137899999999986499747999982798866676523664446665026789999875


Q ss_pred             -----HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCCCC---HHHHHHHHHHHH
Q ss_conf             -----14960665305656661478999999999898---6508875087533776664455680---789999998754
Q gi|254780741|r  155 -----IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDYPV---KDFCQRLKEFSE  223 (367)
Q Consensus       155 -----~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~~~---~~~~~~i~~~~~  223 (367)
                           ..++.|+|||+|||+.+...|.+++..+..++   ...+..++++|+|||+++++.....   .+.+........
T Consensus       191 ~~~~~~l~~~Glh~HvgS~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~idiGGG~~~~~~~~~~~~~~~~~~~~~~~~~  270 (425)
T 2qgh_A          191 AKKSAFLEPVSVHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQ  270 (425)
T ss_dssp             HHHCSSEEEEEEECCCBSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCTTSCCCCCHHHHHHHHHHHTT
T ss_pred             HHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             54204357878997068666660678888888889999999709987767666866767777553108999999887650


Q ss_pred             HCCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEEEECCCCC
Q ss_conf             2165045300220145741888788786304-43334333356565664001345530002----478645998623336
Q gi|254780741|r  224 KYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP----NTGPYTAMVCGRSCL  298 (367)
Q Consensus       224 ~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~G~~C~  298 (367)
                      ..++++++||||++|++||+++|+|+++|+. +++|+++|+|+++++++.++..+++....    ++...++.|+||||+
T Consensus       271 ~~~~~l~~EPGR~lva~ag~llt~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GptC~  350 (425)
T 2qgh_A          271 GLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVITPSKGREISPCDVVGPVCE  350 (425)
T ss_dssp             TCCCEEEECCCHHHHTTTEEEEEEEEEEEC--CCCEEEESCCTTTCCHHHHHCCCCCEEECSCC---CCEEEEEECSSSS
T ss_pred             CCCCEEEECCHHHHHHHCEEEEEEEEEEEECCCEEEEEECCCHHCCCCHHHHCCCCCEEEECCCCCCCCCEEEEECCCCC
T ss_conf             55754885300675532258999999995039904999877421046855604545325402467887427999897868


Q ss_pred             CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf             664552135667788798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r  299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL  366 (367)
Q Consensus       299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~  366 (367)
                      ++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|+++ +|+++++| |||+||++++.
T Consensus       351 s~D~l~~~~~lP~l~~GD~l~f~~~GAY~~~~~s~Fn~~p~p~~v~~~-~g~~~~i~~ret~~dl~~~~  418 (425)
T 2qgh_A          351 SSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPKLLELALE-DHKIRVIRKREALEDLWRLE  418 (425)
T ss_dssp             TTCEEEEEEEECCCCTTCEEEECSCSSSSGGGCCCTTTCCCCEEEEEC-C-CEEEEECCCCGGGGTGGG
T ss_pred             CCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHHH
T ss_conf             887985066168999999999989752136451744389998289999-99899997589999999717


No 6  
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8}
Probab=100.00  E-value=0  Score=559.16  Aligned_cols=361  Identities=17%  Similarity=0.179  Sum_probs=305.5

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEECC-C
Q ss_conf             88568977999999999999985336986999541059999999998518748980799998987-368801088537-7
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYNV-A   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~~-~   80 (367)
                      +|||||||++.|++|+++++++++..+++++||+||||++.|+++|.+.|+|+||+|.+|+++|+ .|+++++|+|++ .
T Consensus        12 GTP~yv~d~~~l~~~~~~l~~~~~~~~~~~~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~ii~~~~~   91 (386)
T 2yxx_A           12 GTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGELLAAKLAGVPSHTVVWNGNG   91 (386)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHTTTSCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSC
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             99889998999999999999745778968999960078599999999839967995999999999818997548862898


Q ss_pred             CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH----HHH
Q ss_conf             78034788613886-8985672059999998612345614899635774431012455786435742788887----431
Q gi|254780741|r   81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----SEI  155 (367)
Q Consensus        81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----~~~  155 (367)
                      |++++++.|.+.+. .+++|+.+|++++... ...+.++++|+||++.........++.+.++||+..++...    ...
T Consensus        92 k~~~~l~~a~~~gv~~~~~d~~~~~~~~~~~-~~~~~~i~lri~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  170 (386)
T 2yxx_A           92 KSRDQMEHFLREDVRIVNVDSFEEMEIWREL-NPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRS  170 (386)
T ss_dssp             CCHHHHHHHHHTTCCEEEECCHHHHHHHHHH-CCTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH-HCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             9999999998639751024328999999875-033410565436885666776221377667665035555689987431


Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEHH
Q ss_conf             4960665305656661478999999999898650887508753377666445568078999999875-421650453002
Q gi|254780741|r  156 KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFS-EKYSVQIYLEPG  234 (367)
Q Consensus       156 ~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~-~~~~~~l~iEPG  234 (367)
                      .++.|+|||+|||+.+...|.+++..+.+.....  .+++|||||||++++.+...+.......... ....+++++|||
T Consensus       171 ~~l~GlhfHvgS~~~~~~~~~~a~~~~~~~~~~~--~~~~idiGGGf~~~~~~~~~~~~~~~~~~~~~~~~~~~li~EPG  248 (386)
T 2yxx_A          171 MNIRGLHVHIGSQITRVEPFVEAFSKVVRASERY--GFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFKRVIVEIG  248 (386)
T ss_dssp             SCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH--TCSEEECCCCBCCCSSSCCCCHHHHHHHTGGGGTTCSEEEEEEC
T ss_pred             CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             7804898744865445540667999999986305--98566346745777776432167899999876255874998771


Q ss_pred             HHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCEEEEEECCCCCCCCEEEECCCCCC
Q ss_conf             20145741888788786304-4333433335656566400134553000--24786459986233366645521356677
Q gi|254780741|r  235 EAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY--PNTGPYTAMVCGRSCLAGDIFGEFHFEKP  311 (367)
Q Consensus       235 R~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~G~~C~~~D~l~~~~~~~~  311 (367)
                      ||||++||+++|+|+++|++ +++|+++|+|++++++|.++..+++...  .+....+++|+||||+++|+|+++..+|+
T Consensus       249 R~lva~~g~lvt~V~~~k~~~~~~~~i~D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~tC~~~D~l~~~~~lP~  328 (386)
T 2yxx_A          249 RYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVIAYDRELPE  328 (386)
T ss_dssp             HHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCCHHHHTCCCCCEEETTCCCCSEEEEEECSSSSTTCEEEEEEEESC
T ss_pred             HHHHHCCEEEEEEEEEEEECCCCEEEEECCCHHHCCCCHHHCCCCEEEECCCCCCCCEEEEECCCCCCCCEECCCCCCCC
T ss_conf             20311853899999997314982799999821203573541354205741456775627998867898888834551798


Q ss_pred             CCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf             88798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r  312 VKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL  366 (367)
Q Consensus       312 l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~  366 (367)
                      +++||+|+|.|+|||+++|+++||++|+|++++++++|+++++| |||+||++++.
T Consensus       329 l~~GD~l~f~~~GAY~~~~~~~Fn~~~~P~~v~v~~~g~~~~ir~~et~ed~~~~~  384 (386)
T 2yxx_A          329 VEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRISLIRRRETEMDIFKDV  384 (386)
T ss_dssp             CCTTCEEEESSCSSSSGGGCCCTTTCCCCEEEEECTTSCEEEEECCCCHHHHTTTC
T ss_pred             CCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCHHHHHHCC
T ss_conf             99999999949861047553665689988499997698499997689999997404


No 7  
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00  E-value=0  Score=557.37  Aligned_cols=363  Identities=20%  Similarity=0.250  Sum_probs=303.9

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHH------CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCE
Q ss_conf             8856897799999999999998533------69869995410599999999985187489807999989873-6880108
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKN------AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETH   75 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~------~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i   75 (367)
                      +|||||||++.|++|+++++.+|+.      .+++++||+||||++.|++++.+.|+|+||+|.+|+++|++ |+++++|
T Consensus        29 GTP~yv~d~~~l~~n~~~l~~af~~~~~~~g~~~~i~YAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~I  108 (434)
T 1twi_A           29 GTPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADVVSGGELYIAKLSNVPSKKI  108 (434)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGE
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCEE
T ss_conf             99889987999999999999988776762388759999862489999999999849983997899999999638998718


Q ss_pred             EEC-CCCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf             853-777803478861388-68985672059999998612345--61489963577443101245578643574278888
Q gi|254780741|r   76 AYN-VAYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI  151 (367)
Q Consensus        76 ~~~-~~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~  151 (367)
                      +|+ |.|++++++.|++.+ ..+++||.+|++++.+.+++.+.  +|++||||+.+...+..+.++...+|||+..++..
T Consensus       109 i~~gp~k~~~~l~~a~~~gv~~~~~ds~~el~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~~~fg~~~~~~~  188 (434)
T 1twi_A          109 VFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGI  188 (434)
T ss_dssp             EECCSSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSH
T ss_pred             EECCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf             98489899999998986897067311356788999999982998628999605768776744025766555664300046


Q ss_pred             ---------HHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH---HHCCCCCEEEEECCCCCCCCCCC----CCHHHH
Q ss_conf             ---------74314960665305656661478999999999898---65088750875337766644556----807899
Q gi|254780741|r  152 ---------ESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF---GHFITQIEWISLGGGIHFTDKDY----PVKDFC  215 (367)
Q Consensus       152 ---------~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~---~~~~~~l~~idiGGG~~~~~~~~----~~~~~~  215 (367)
                               +....++.|+|||+|||+.+...|.+.++.+.+++   .+.+.++++||+||||++++...    +.+.+.
T Consensus       189 ~~~~~~~~~~~~~l~~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~~  268 (434)
T 1twi_A          189 AMKAIKMALEMEYVNVVGVHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQIPTQKDLA  268 (434)
T ss_dssp             HHHHHHHHHHCSSEEEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECCCCBCCCSSSSSCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCHHHHH
T ss_conf             89999999864899725788983565344315899999999999999985998037787476752304788886479999


Q ss_pred             HHHHHHHH----H-CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf             99998754----2-165045300220145741888788786304-43334333356565664001345530002--4786
Q gi|254780741|r  216 QRLKEFSE----K-YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIYP--NTGP  287 (367)
Q Consensus       216 ~~i~~~~~----~-~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~~~--~~~~  287 (367)
                      ..+.....    . .+++|++|||||+|++||++||+|+++|++ +..|+++|+|++++++|.++..+++....  ....
T Consensus       269 ~~~~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~  348 (434)
T 1twi_A          269 DAIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMRPAMYEAYHHIINCKVKNEK  348 (434)
T ss_dssp             HHHHHHHHTTTTTSCCCEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEEEESCCTTTCCHHHHHCCCCCEEESBCCSCE
T ss_pred             HHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEEEEEEEEEECCCCEEEEEECCCCCCCCCHHHHHCCCEEEECCCCCCC
T ss_conf             99998875442036786799526708874776899999976315872699981576787622444223034402578997


Q ss_pred             EEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHHHHC
Q ss_conf             45998623336664552135667788798999968870223243476899887799996799099997-38989998742
Q gi|254780741|r  288 YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYYNNL  366 (367)
Q Consensus       288 ~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~~~~  366 (367)
                      .++.|+||||+++|+|+++..+|++++||+|+|.|+|||+++|+++||++|+|++|+++ +++.+++| |||+||+++|.
T Consensus       349 ~~~~i~G~tC~~~D~l~~~~~lp~l~~GD~l~~~~~GAY~~~~~s~FN~~~~p~~v~v~-~~~~~~ir~~et~ed~~~~~  427 (434)
T 1twi_A          349 EVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGISMANNYNARGRPRMVLTS-KKGVFLIRERETYADLIAKD  427 (434)
T ss_dssp             EEEEEECSSSCTTCEEEEEEEEECCCTTCEEEEECCSSSSGGGCBCTTTCCCCEEEEEE-TTEEEEEECCCCHHHHTTTB
T ss_pred             CEEEEEEECCCCCCEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHHHCC
T ss_conf             18999990888988888261668999899999859750317561866699988399998-99289997689899997478


No 8  
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00  E-value=0  Score=550.69  Aligned_cols=362  Identities=18%  Similarity=0.229  Sum_probs=301.6

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-C
Q ss_conf             888568977999999999999985336986999541059999999998518748980799998987-36880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~   79 (367)
                      .+|||||||++.|++|+++++.++. ++++++||+||||++.|++++.+.|+|+||+|.+|+++|+ .|+++++|+|+ |
T Consensus        15 ~gTP~yV~d~~~i~~n~~~l~~~~~-~~~~i~yA~KaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~ii~~gp   93 (428)
T 2j66_A           15 FETPFYLYDGDFIEAHYRQLRSRTN-PAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGELALARHAGFSAENIIFSGP   93 (428)
T ss_dssp             SCSSEEEEEHHHHHHHHHHHHHTSC-TTEEEEEEGGGCCCHHHHHHHHHTTCEEEESSHHHHHHHHHTTCCGGGEEECCS
T ss_pred             HCCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf             1998899889999999999985268-997899997427999999999981992997399999999974999201897688


Q ss_pred             CCCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH---
Q ss_conf             77803478861388-68985672059999998612345--6148996357744310124557864357427888874---
Q gi|254780741|r   80 AYKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES---  153 (367)
Q Consensus        80 ~~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~---  153 (367)
                      .|++++++.+++.+ ..+++||.+|+++|...++..+.  ++++|++|+.+.. .....++...||||++.+++.+.   
T Consensus        94 ~k~~~~l~~a~~~gv~~~~~d~~~el~~i~~~~~~~~~~~~v~~r~~~~~~~~-~~~~~~g~~~skfg~~~~~~~~~~~~  172 (428)
T 2j66_A           94 GKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFG-STAIKMGGVPRQFGMDESMLDAVMDA  172 (428)
T ss_dssp             CCCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC---CCCSSSCCCCSSSEEGGGHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-EEEEECCCCCHHCCCCHHHHHHHHHH
T ss_conf             89899998777359511036789999999998886399616885127765431-12210477710026548989889987


Q ss_pred             ----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHH
Q ss_conf             ----314960665305656661478999999999898----6508875087533776664455----6807899999987
Q gi|254780741|r  154 ----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF----GHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEF  221 (367)
Q Consensus       154 ----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~----~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~  221 (367)
                          ...++.|+|||+|||+.+.+.|.++++.+.+.+    .+++..+++||+||||++++.+    .+++.+++.+...
T Consensus       173 ~~~~~~l~~~G~H~h~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~~~~i~~~  252 (428)
T 2j66_A          173 VRSLQFTKFIGIHVYTGTQNLNTDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVSDY  252 (428)
T ss_dssp             HHHCTTEEEEEEECCCCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCCCSEEECCCCBCCCCC--CCCCCHHHHHHHHHHH
T ss_pred             HHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             64203442588888478774410359999999999999999965986304431588787654456642078899999988


Q ss_pred             HHHC------CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC--------CCC---CC
Q ss_conf             5421------65045300220145741888788786304-433343333565656640013455--------300---02
Q gi|254780741|r  222 SEKY------SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQES--------ATI---YP  283 (367)
Q Consensus       222 ~~~~------~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~--------~~~---~~  283 (367)
                      .++.      +++||+|||||+|++||+++++|+++|++ +.+|+++|+|+++++++.++....        ...   .+
T Consensus       253 ~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~k~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (428)
T 2j66_A          253 VQEARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGRSMRSNYPMEYIPVREDSG  332 (428)
T ss_dssp             HHHHHTTTCTTCEEEEEESHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTCTTC-----------CEEEEC------
T ss_pred             HHHHHHCCCCCCEEEEECCEEEEECCCCEEEEEEEEECCCCCEEEEECCEEECCCCHHHCCCCCCCCCEEEEEEECCCCC
T ss_conf             76532025887469972455570010526799999971698518998761001563243463212232047774047777


Q ss_pred             CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCC-CCCCCCCCEEEEEECCCCEEEEE-ECCHHH
Q ss_conf             4786459986233366645521356677887989999688702232434-76899887799996799099997-389899
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKN-WFNGINMPTIAVKNVDGTIKAIR-EFSYND  361 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~-~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d  361 (367)
                      +....+++|+||||+++|+|+++..+|++++||+|+|.|+|||+++|++ +||++|+|++|+++ +|+++++| |||+||
T Consensus       333 ~~~~~~~~i~G~tC~~~D~l~~~~~lp~l~~GD~lvf~~~GAY~~s~s~~~fn~~p~p~~v~~~-~g~~~lirrret~ed  411 (428)
T 2j66_A          333 RRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGAYGLSFSPVHFLGHPTPIEILKR-NGSYELIRRKGTADD  411 (428)
T ss_dssp             ---CEEEEEECSSSSTTCEEEEEEEESCCCTTCEEEESSCSSSSGGGSCTTGGGCCCCEEEEEE-TTEEEEEECCCCHHH
T ss_pred             CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEE-CCEEEEEECCCCHHH
T ss_conf             7885079998018998767653542688999999999088623565630022399998499998-998999978898999


Q ss_pred             HHHHC
Q ss_conf             98742
Q gi|254780741|r  362 YYNNL  366 (367)
Q Consensus       362 ~~~~~  366 (367)
                      ++.+.
T Consensus       412 ~~~~~  416 (428)
T 2j66_A          412 IVATQ  416 (428)
T ss_dssp             HHGGG
T ss_pred             HHHCC
T ss_conf             98533


No 9  
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A
Probab=100.00  E-value=0  Score=553.38  Aligned_cols=361  Identities=15%  Similarity=0.211  Sum_probs=302.3

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|+++|+.++. ++++++||+||||++.|++++.+.|+|+||+|++|+++|++ |+++++|+|+ |.
T Consensus        41 GTP~yV~d~~~i~~n~~~l~~af~-~~~~i~yAvKaN~~~~vl~~l~~~G~G~dvaS~~El~~al~~G~~~~~Ii~~gp~  119 (467)
T 2o0t_A           41 GTPLFVIDEDDFRSRCRETAAAFG-SGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHASFPPERITLHGNN  119 (467)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHTS-SGGGBEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCTT
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             999899889999999999998568-9987999874288799999999819979998999999999759893329991898


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHH-------
Q ss_conf             7803478861388-68985672059999998612345--6148996357744310124557864357427888-------
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDK-------  150 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~-------  150 (367)
                      |++++++.++..+ ..+++||++|++++.+++++.+.  +|++|+||++....+....++...||||+...+.       
T Consensus       120 k~~~~l~~a~~~gv~~i~iDs~~El~~l~~~~~~~~~~~~v~lrl~~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~  199 (467)
T 2o0t_A          120 KSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVR  199 (467)
T ss_dssp             CCHHHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999998775043258846789999999987763987413453204766555422346645565576501567899999


Q ss_pred             --HHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH--------HHCCCCCEEEEECCCCCCCCC----CCCCHHHHH
Q ss_conf             --874314960665305656661478999999999898--------650887508753377666445----568078999
Q gi|254780741|r  151 --IESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF--------GHFITQIEWISLGGGIHFTDK----DYPVKDFCQ  216 (367)
Q Consensus       151 --~~~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~--------~~~~~~l~~idiGGG~~~~~~----~~~~~~~~~  216 (367)
                        .+....++.|+|||+|||+.+.+.|.+.+..+.+++        .+.+..+++||+||||++++.    ..+++.+++
T Consensus       200 ~~~~~~~~~l~Glh~H~gs~~~d~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ld~GGG~~~~~~~~~~~~~~~~~~~  279 (467)
T 2o0t_A          200 RVFATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAA  279 (467)
T ss_dssp             HHHHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCCCCCHHHHHH
T ss_pred             HHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHH
T ss_conf             99735698577898863888787088999999999988889986567507563210331786746777788887789999


Q ss_pred             HHHHHHH----HC---CCEEEEEHHHHCCCCCEEEEEEEEEEEC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9998754----21---6504530022014574188878878630------443334333356565664001345530002
Q gi|254780741|r  217 RLKEFSE----KY---SVQIYLEPGEAIVTNTTTLNTTVLDISE------NIKNLVIVDSSVEAHVPDYLLYQESATIYP  283 (367)
Q Consensus       217 ~i~~~~~----~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~------~~~~~v~vd~g~~~~~~~~~~~~~~~~~~~  283 (367)
                      .+....+    ..   ++++++||||++|++||.++++|..+|.      ++++|+++|+|++++++++++..+++....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~EPGR~lv~~ag~llt~V~~~~~~~~~~~~~~~~~~vdag~~~~~~~~~~~~~~~~~~~  359 (467)
T 2o0t_A          280 KLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDGGMSDNIRTALYGAQYDVRLV  359 (467)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSSSCEEEEEEESCCTTTCCHHHHHCCCCCEEEC
T ss_pred             HHHHHHHHHHHHCCCCCCEEEECCCEEEEECCEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHCCCCCEEEC
T ss_conf             99999998753205767508986630786544799999999974202323765899988765456685671875634852


Q ss_pred             ----CCCCEEEEEECCCCCCCCEEEECCCCC-CCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-EC
Q ss_conf             ----478645998623336664552135667-788798999968870223243476899887799996799099997-38
Q gi|254780741|r  284 ----NTGPYTAMVCGRSCLAGDIFGEFHFEK-PVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EF  357 (367)
Q Consensus       284 ----~~~~~~~~v~G~~C~~~D~l~~~~~~~-~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e  357 (367)
                          +....++.|+||||+++|+|+.+..+| ++++||+|+|.|||||+++|+++||++|+|++|+++ +|+.++|| ||
T Consensus       360 ~~~~~~~~~~~~v~G~tC~~~D~l~~~~~lP~~l~~GD~l~f~~~GAY~~~~s~~fN~~~~P~~v~v~-~g~~~lir~re  438 (467)
T 2o0t_A          360 SRVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLVAVAATGAYCYSLSSRYNMVGRPAVVAVH-AGNARLVLRRE  438 (467)
T ss_dssp             SSCCCSCEEEEEEECSSSSTTCEEEEEEEEETTCCTTCEEEESCCSSSSSTTCBCGGGCCCCEEEEEE-TTEEEEEECCC
T ss_pred             CCCCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEE-CCEEEEEECCC
T ss_conf             57788982699999658799879925656888899999999859213247774836589998389999-99699998889


Q ss_pred             CHHHHHHH
Q ss_conf             98999874
Q gi|254780741|r  358 SYNDYYNN  365 (367)
Q Consensus       358 ~~~d~~~~  365 (367)
                      |+||++++
T Consensus       439 t~ed~~~~  446 (467)
T 2o0t_A          439 TVDDLLSL  446 (467)
T ss_dssp             CHHHHHTT
T ss_pred             CHHHHHHH
T ss_conf             99999853


No 10 
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00  E-value=0  Score=547.73  Aligned_cols=355  Identities=15%  Similarity=0.194  Sum_probs=294.1

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCC----CCEEE
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880----10885
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGG----ETHAY   77 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~----~~i~~   77 (367)
                      +|||||||++.|++|+++++.+     ++++||+||||++.|+++|++.|+|+||+|++|+++|++ |+++    ++|+|
T Consensus        25 GTP~yv~d~~~l~~~~~~l~~~-----~~v~YAvKaN~~~~vl~~l~~~G~g~dvaS~~El~~al~~G~~~~~~~~~Ii~   99 (425)
T 1knw_A           25 GCPVWVYDAQIIRRQIAALKQF-----DVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVF   99 (425)
T ss_dssp             CSSEEEEEHHHHHHHHHTTTTS-----SEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCTTTCTTSEEE
T ss_pred             CCCEEEEEHHHHHHHHHHHHCC-----CEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEE
T ss_conf             9988998799999999985166-----98999951178999999999849978998999999999869996677342797


Q ss_pred             C-CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH----
Q ss_conf             3-77780347886138868985672059999998612345614899635774431012455786435742788887----
Q gi|254780741|r   78 N-VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE----  152 (367)
Q Consensus        78 ~-~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~----  152 (367)
                      + |.|++++++.|++.+..+++||++|+++|.++++.  .+|++||||+++...+....++...+|||++.+++.+    
T Consensus       100 ~gp~k~~~~l~~a~~~g~~i~~ds~~el~~l~~~~~~--~~v~lRi~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~  177 (425)
T 1knw_A          100 TADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPG--HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDV  177 (425)
T ss_dssp             EESCCCHHHHHHHHHHTCCEEESSHHHHHHHHHHSTT--CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             4785569999766540530010258899999750454--53110037886655465555666666554031332477899


Q ss_pred             --HHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----CCCHHHHHHHHHH----H
Q ss_conf             --43149606653056566614789999999998986508875087533776664455----6807899999987----5
Q gi|254780741|r  153 --SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKD----YPVKDFCQRLKEF----S  222 (367)
Q Consensus       153 --~~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~----~~~~~~~~~i~~~----~  222 (367)
                        ....++.|+|||+|||+.+...++. +..+.+...+++.++++||+||||++++..    .+.+.+...+...    .
T Consensus       178 ~~~~~l~~~Glh~H~gS~~~~~~~~~~-~~~~~~~~~~~g~~l~~ldiGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (425)
T 1knw_A          178 IQRHHLQLVGIHMHIGSGVDYAHLEQV-CGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIA  256 (425)
T ss_dssp             HHHTTCEEEEEECCCCCTTCHHHHHHH-HHHHHHHHHHHTCCCSEEECCCCCCCCCSTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEEEEEEEECCCCCHHHHHHH-HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             875592587778740554435788999-8776444320461222344336636477888778758988777889999986


Q ss_pred             HH--CCCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCCCC--CC------CCCCEEEE
Q ss_conf             42--165045300220145741888788786304-433343333565656640013455300--02------47864599
Q gi|254780741|r  223 EK--YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATI--YP------NTGPYTAM  291 (367)
Q Consensus       223 ~~--~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~~~~--~~------~~~~~~~~  291 (367)
                      ..  .+++|++|||||+|++||+++++|+++|++ +++|+++|+|+++++++.++..+++..  ..      .....++.
T Consensus       257 ~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (425)
T 1knw_A          257 RHLGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVETV  336 (425)
T ss_dssp             HHHTSCCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTSCHHHHHCCCCCEEEECTTCCCCTTCCEEEEE
T ss_pred             HHCCCCEEEEECCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf             52355249985377540036027999998997259736899775015676766628634125641566544468961799


Q ss_pred             EECCCCCCCCEEEEC-------CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHHH
Q ss_conf             862333666455213-------5667788798999968870223243476899887799996799099997-38989998
Q gi|254780741|r  292 VCGRSCLAGDIFGEF-------HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDYY  363 (367)
Q Consensus       292 v~G~~C~~~D~l~~~-------~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~~  363 (367)
                      |+||||+++|+|+++       ..+|++++||+|+|.||||||++|+++||++|+|++|+++ +|+.+++| |||+||++
T Consensus       337 v~G~tC~s~D~l~~~~~~~~~~~~LP~l~~GD~l~f~~~GAYt~s~~s~Fn~~p~p~~v~~~-~g~~~lir~ret~~d~~  415 (425)
T 1knw_A          337 VAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLLPEVLFD-NGQARLIRRRQTIEELL  415 (425)
T ss_dssp             EECSSSSTTCBSSBCTTSCBCCEEEECCCTTCEEEEESCSSSSGGGCCCTTTCCCCCEEEEE-TTEEEEEECCCCHHHHH
T ss_pred             EECCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEEE-CCEEEEEECCCCHHHHH
T ss_conf             98069789817854666653335478899899999979763147661745699988789999-99999997889999997


Q ss_pred             HHC
Q ss_conf             742
Q gi|254780741|r  364 NNL  366 (367)
Q Consensus       364 ~~~  366 (367)
                      +|.
T Consensus       416 ~~~  418 (425)
T 1knw_A          416 ALE  418 (425)
T ss_dssp             TTT
T ss_pred             HCC
T ss_conf             317


No 11 
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00  E-value=0  Score=544.70  Aligned_cols=350  Identities=19%  Similarity=0.201  Sum_probs=290.5

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC
Q ss_conf             88568977999999999999985336986999541059999999998518748980799998987-36880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~   80 (367)
                      +|||||||.+.|++|++++++++  |+++++||+||||++.||++|++.|+|+||+|.+|+++|+ .|+++++|+|+ |.
T Consensus        47 ~~pfyv~D~~~i~~~~~~~~~~~--P~v~~~YAvKaN~~~~il~~l~~~G~G~DvaS~~El~~al~aG~~~~~Iif~gp~  124 (471)
T 2oo0_A           47 KDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPC  124 (471)
T ss_dssp             CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             98779978999999999999868--9977987751089899999999849949985999999999769894529997999


Q ss_pred             CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf             78034788613886-89856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r   81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------  153 (367)
                      |++++|+.|++.+. +|++||++||++|.+..+  ..+|++||||+...      .++...+|||++.+++...      
T Consensus       125 K~~~el~~A~~~gv~~i~~dS~~EL~~i~~~~~--~~~v~lRi~~~~~~------~~~~~~~kFG~~~~~~~~~~~~~~~  196 (471)
T 2oo0_A          125 KQVSQIKYAANNGVQMMTFDSEVELMKVARAHP--KAKLVLRIATDDSK------AVCRLSVKFGATLRTSRLLLERAKE  196 (471)
T ss_dssp             CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCT--TCEEEEEECCCCTT------SSBCCTTTSCBCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC--CCCEECCCCCCCCC------CCEECCCCCCCCHHHHHHHHHHHHH
T ss_conf             999999999986997999689899999998602--68420345678643------3011366766448999999998875


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHH-----
Q ss_conf             31496066530565666147899999999989---8650887508753377666445-56807899999987542-----
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKE---FGHFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEK-----  224 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~-----  224 (367)
                      ...++.|||||+|||+.+.+.|.+.++.+.++   ..+++..+++|||||||++++. +.+++.++..+.....+     
T Consensus       197 ~~l~~~GlH~HiGS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~ldiGGGf~~~~~~~~~~e~~~~~i~~~~~~~~~~~  276 (471)
T 2oo0_A          197 LNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSD  276 (471)
T ss_dssp             TTCEEEEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCSSSSSSSCHHHHHHHHHHHHHHHSCGG
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             59518999997588767728899999987788988876086533322477756556665567889999988888750247


Q ss_pred             CCCEEEEEHHHHCCCCCEEEEEEEEEEECC---------------CCCCCCCCCCCCCCCCCCCCCCCCCC--CC----C
Q ss_conf             165045300220145741888788786304---------------43334333356565664001345530--00----2
Q gi|254780741|r  225 YSVQIYLEPGEAIVTNTTTLNTTVLDISEN---------------IKNLVIVDSSVEAHVPDYLLYQESAT--IY----P  283 (367)
Q Consensus       225 ~~~~l~iEPGR~lv~~ag~lv~~V~~~K~~---------------~~~~v~vd~g~~~~~~~~~~~~~~~~--~~----~  283 (367)
                      .++++++|||||||++||+++|+|+++|..               ...++++|+|+++.+++.++...++.  ..    +
T Consensus       277 ~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~~~~~~~~~~~~~i~~G~~~~~~~~l~~~~~~~~~~~~~~~~  356 (471)
T 2oo0_A          277 SGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKP  356 (471)
T ss_dssp             GTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTGGGHHHHSCCCCCCEESSCCCT
T ss_pred             CCCEEEEECCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEECCCCCC
T ss_conf             89579961771576411899999999997313223434434566734899987544553134553036502454367787


Q ss_pred             CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE-CCHHHH
Q ss_conf             4786459986233366645521356677887989999688702232434768998877999967990999973-898999
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE-FSYNDY  362 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~-e~~~d~  362 (367)
                      ++...+++|+||||+++|+|+++..+|++++||+|+|.++|||+++|+|+||++|+|++|++++++.+++||| |++|..
T Consensus       357 ~~~~~~~~v~Gp~C~s~D~l~~~~~LP~l~~GD~l~~~~~GAY~~s~ss~fN~~~~P~~v~v~~~~~~~lirr~e~~d~~  436 (471)
T 2oo0_A          357 DEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDFP  436 (471)
T ss_dssp             TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHHHHCC----
T ss_pred             CCCEEEEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCH
T ss_conf             78776899995587888889455077889999999992985512766476779999808999938957999427787561


No 12 
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00  E-value=0  Score=542.27  Aligned_cols=349  Identities=19%  Similarity=0.212  Sum_probs=290.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-C
Q ss_conf             8885689779999999999999853369869995410599999999985187489807999989873-6880108853-7
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-V   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~   79 (367)
                      .+|||||||++.|++|+++++.++  |+++++||+||||++.|+++|.+.|+|+||+|.+|+++|++ |+++++|+|+ |
T Consensus        36 ~~~pfyv~d~~~i~~~~~~~~~~~--P~v~~~YAvKaN~~~~il~~l~~~G~g~dvaS~~El~~al~~G~~~~~Iv~~gp  113 (424)
T 7odc_A           36 DKDAFYVADLGDILKKHLRWLKAL--PRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANP  113 (424)
T ss_dssp             CCCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCS
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf             998789958999999999999868--998799885108989999999984992999799999999986979040999799


Q ss_pred             CCCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf             778034788613886-898567205999999861234561489963577443101245578643574278888743----
Q gi|254780741|r   80 AYKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----  154 (367)
Q Consensus        80 ~~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----  154 (367)
                      .|++++|+.|++.+. ++++||++||+++.+.++  ..++.+|++++...      .++...+|||++.+++.+..    
T Consensus       114 ~K~~~~i~~A~~~gv~~i~~ds~~EL~~l~~~~~--~~~v~~Ri~~~~~~------~~~~~~skFG~~~~~~~~~~~~~~  185 (424)
T 7odc_A          114 CKQVSQIKYAASNGVQMMTFDSEIELMKVARAHP--KAKLVLRIATDDSK------AVCRLSVKFGATLKTSRLLLERAK  185 (424)
T ss_dssp             SCCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCT--TCEEEEEBCC-----------------CCCBCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC--CCCCCEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             9999999999985995788789999999998553--57752365148754------556766778857899999999876


Q ss_pred             --HCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHC---
Q ss_conf             --149606653056566614789999999998---98650887508753377666445-568078999999875421---
Q gi|254780741|r  155 --IKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTDK-DYPVKDFCQRLKEFSEKY---  225 (367)
Q Consensus       155 --~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~~-~~~~~~~~~~i~~~~~~~---  225 (367)
                        ..++.|+|||+|||+.+.+.|.+.++.+..   ...+++.++++|||||||++++. +.++++++..++...+++   
T Consensus       186 ~~~l~~~Glh~HvgS~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~~~~~~~~~~~~~~~~i~~~~~~~~~~  265 (424)
T 7odc_A          186 ELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPS  265 (424)
T ss_dssp             HTTCEEEEEECCCCSSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECCCCCCCSSSSSSCHHHHHHHHHHHHHHHSCG
T ss_pred             HCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             45972889999728887741779988888889999999719873067736876776666410577888899999987330


Q ss_pred             --CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CC--------------CCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf             --65045300220145741888788786304-43--------------334333356565664001345530002-----
Q gi|254780741|r  226 --SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IK--------------NLVIVDSSVEAHVPDYLLYQESATIYP-----  283 (367)
Q Consensus       226 --~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~--------------~~v~vd~g~~~~~~~~~~~~~~~~~~~-----  283 (367)
                        +++||+|||||+|++||+++++|+++|.. ++              .++.+|+|++..++|.++..+++....     
T Consensus       266 ~~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~l~~~~~~~~~~~~~~~  345 (424)
T 7odc_A          266 DSGVRIIAEPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQKRPK  345 (424)
T ss_dssp             GGTCEEEECCSHHHHGGGEEEEEEEEEEEEEC-------------CCEEEEEESCCTTTTTHHHHHSCCCCCCEESSCCC
T ss_pred             CCCCEEEECCCHHHHHCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCC
T ss_conf             68964997797230111606999999999832533321344344563589998665466503456424550365446888


Q ss_pred             -CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHH
Q ss_conf             -478645998623336664552135667788798999968870223243476899887799996799099997-38989
Q gi|254780741|r  284 -NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYN  360 (367)
Q Consensus       284 -~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~  360 (367)
                       ++...++.|+||+|+++|+|+++..+|++++||+|+|.+|||||++|+|+||++|+|++|++.+++.+.++| ||||.
T Consensus       346 ~~~~~~~~~i~Gp~C~~~D~l~~~~~LP~l~~GD~l~~~~~GAY~~~~~s~fN~~~~P~~~~v~~~~~~~~ir~~et~~  424 (424)
T 7odc_A          346 PDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRPMWQLMKQIQSHG  424 (424)
T ss_dssp             TTCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEEEEHHHHHHHC------
T ss_pred             CCCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCCEEEEEECCCEEEEEECCCCC
T ss_conf             8787778999975858887886454678999999999849884127655645799999689999689659999467799


No 13 
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00  E-value=0  Score=539.90  Aligned_cols=348  Identities=20%  Similarity=0.233  Sum_probs=281.7

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|++++++++  ++++++||+||||++.||+++++.|+|+||+|++|+++|++ |+++++|+|+ |.
T Consensus        37 GTP~yv~d~~~i~~~~~~~~~a~--p~~~~~YAvKAN~~~~il~~l~~~G~g~dv~S~gEl~~al~~G~~~~~Iv~~gp~  114 (425)
T 1f3t_A           37 GDPFFVADLGDIVRKHETWKKCL--PRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRVRGIGVPPEKIIYANPC  114 (425)
T ss_dssp             CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             99579958999999999999868--9987999863489899999999829939984999999999769796749996898


Q ss_pred             CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf             78034788613886-89856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r   81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------  153 (367)
                      |+++||+.+++.+. .+++||++|++++.+..+  ..++++|++|....      .++...||||++.+++.+.      
T Consensus       115 Ks~~el~~a~~~gi~~~~~ds~~el~~i~~~~~--~~~v~~ri~~~~~~------~~~~~~skFG~~~~~~~~~l~~~~~  186 (425)
T 1f3t_A          115 KQISHIRYARDSGVDVMTFDCVDELEKVAKTHP--KAKMVLRISTDDSL------ARCRLSVKFGAKVEDCRFILEQAKK  186 (425)
T ss_dssp             CCHHHHHHHHHTTCCEEEECSHHHHHHHHHHCT--TCEEEEEBCC----------------CCSCBCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCEECCHHHHHHHHHHHHHCC--CCCEEEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             999999999983974712788999999986445--67626785045543------3355777776657888999988763


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHC----
Q ss_conf             3149606653056566614789999999998---986508875087533776664455-68078999999875421----
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTDKD-YPVKDFCQRLKEFSEKY----  225 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~~~-~~~~~~~~~i~~~~~~~----  225 (367)
                      ...++.|||||+|||+.+.+.|.+.++.+..   ...+.+..+++||+||||++++.. .+.+++++.+.+..++.    
T Consensus       187 ~~l~l~GlH~H~gS~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  266 (425)
T 1f3t_A          187 LNIDVTGVSFHVGSGSTDASTFAQAISDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPD  266 (425)
T ss_dssp             TTCEEEEEECCCCSCCSCTHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCCCSSTTSSSCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             26469999988788877458899999999999888887099521431166657666786214678888777665401456


Q ss_pred             -CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCC--------------CCCCCCCCCCCCCCCCCCCC------CC
Q ss_conf             -65045300220145741888788786304-4333433--------------33565656640013455300------02
Q gi|254780741|r  226 -SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIV--------------DSSVEAHVPDYLLYQESATI------YP  283 (367)
Q Consensus       226 -~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~v--------------d~g~~~~~~~~~~~~~~~~~------~~  283 (367)
                       +++|++||||||||+||+++|+|+++|++ +.++.+.              +.|++...++.++.+.....      .+
T Consensus       267 ~~~~li~EPGR~lva~ag~llt~V~~~K~~~g~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (425)
T 1f3t_A          267 LKLTIVAEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVVRPLPQREPIP  346 (425)
T ss_dssp             TTCEEEECCSHHHHGGGEEEEEEEEEEEEC---------------CCEEEEESCCTTTGGGHHHHSCCCCCCEECSCCCT
T ss_pred             CCCEEEEECHHHHHHEEEEEEEEEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCCCCHHHCCCCCEECCCCCCCCC
T ss_conf             78279981506753024799999999996488068874033456313589841566775131112553110135668888


Q ss_pred             CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHH
Q ss_conf             478645998623336664552135667788798999968870223243476899887799996799099997-38989
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYN  360 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~  360 (367)
                      ++...+++|+||+|+++|+|++++.+|++++||+|+|.|||||+++|+++||++|+|+++++.++++.+++| |||+|
T Consensus       347 ~~~~~~~~v~Gp~C~s~D~l~~~~~Lp~l~~GD~l~~~~~GAY~~s~ss~fn~~~~P~~v~v~~g~~~~~iR~ret~e  424 (425)
T 1f3t_A          347 NEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVRELKSQK  424 (425)
T ss_dssp             TCCEEEEEEECSSSCTTCEEEEEEEEECCCTTCEEEECSCCSSSGGGCCCGGGCCCCEEEEECCSCSTTHHHHHCC--
T ss_pred             CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCCC
T ss_conf             887778999922878787886454888899999999959684348662856699998099999199469986677778


No 14 
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00  E-value=0  Score=537.04  Aligned_cols=351  Identities=17%  Similarity=0.197  Sum_probs=281.8

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC
Q ss_conf             88568977999999999999985336986999541059999999998518748980799998987-36880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|+++++.++  ++++++||+||||++.||++|.+.|+|+||+|.+|+++|+ .|+++++|+|+ |.
T Consensus        37 ~~pfyv~d~~~i~~~~~~~~~~~--p~v~~~YAvKaN~~~~il~~l~~~G~G~DvaS~~El~~al~~G~~~~~Iif~gp~  114 (448)
T 3btn_A           37 KNAFFVGDLGKIVKKHSQWQTVV--AQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNEMALVQELGVSPENIIFTSPC  114 (448)
T ss_dssp             CCCEEEEEHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHHTCEEEESSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
T ss_conf             99779905999999999999878--9986887733489899999999819939997999999999869690029990898


Q ss_pred             CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf             78034788613886-89856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r   81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------  153 (367)
                      |++++|+.|++.|. ++++||++||++|.+.++  +.++.+||+|+...      .++...||||++.+++.+.      
T Consensus       115 Ks~~~l~~A~~~Gv~~~~~Ds~~eL~~i~~~~~--~~~v~~rI~~~~~~------~~~~~~sKFGi~~~~~~~~~~~~k~  186 (448)
T 3btn_A          115 KQVSQIKYAAKVGVNIMTCDNEIELKKIARNHP--NAKVLLHIATEDNI------GGEDGNMKFGTTLKNCRHLLECAKE  186 (448)
T ss_dssp             CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCT--TCEEEEEBCCCC--------------CCCCBCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC--CCCCEEEECCCCCC------CCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             999999999986997599899999999998623--58801211244433------3222466668777899988777622


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHHH---HHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC-----
Q ss_conf             3149606653056566614789999999998---98650887508753377666445568078999999875421-----
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEK---EFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY-----  225 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~---~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~-----  225 (367)
                      ...++.|+|||+|||+.+.+.|.++++.+.+   .+.+++..+++|||||||++++.+  .+.+++.++...+++     
T Consensus       187 ~~l~l~Glh~H~GS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~~~~~~--~~~~~~~i~~~~~~~~~~~~  264 (448)
T 3btn_A          187 LDVQIIGVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTGTEIQ--LEEVNHVISPLLDIYFPEGS  264 (448)
T ss_dssp             HTCEEEEEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCSCHHH--HHHHHHHHHHHHHHHSCTTS
T ss_pred             CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC--HHHHHHHHHHHHHHHHHHCC
T ss_conf             8817856455413654654879999999999999999829953676215766656676--56688999887765332058


Q ss_pred             CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCC-CCCCC------CCCCCCCCCCCCC----------CCCC----C
Q ss_conf             65045300220145741888788786304-433343-33356------5656640013455----------3000----2
Q gi|254780741|r  226 SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVI-VDSSV------EAHVPDYLLYQES----------ATIY----P  283 (367)
Q Consensus       226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~-vd~g~------~~~~~~~~~~~~~----------~~~~----~  283 (367)
                      ++++++|||||+|++||+++|+|+++|+. ++++.+ ++.+.      ..++++.++..++          +...    .
T Consensus       265 ~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (448)
T 3btn_A          265 GIQIISEPGSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDLNTIPEVHKKYKE  344 (448)
T ss_dssp             CCEEEECCSHHHHTTTEEEEEEEEEEEEC-----------------CEEEEESCCTTTTTGGGGC----CCCEECCC---
T ss_pred             CCEEEECCCCCEECCEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCEEEECHHHHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf             97699679862330518999999999972786247874046665621025436144302466654225640120356666


Q ss_pred             CCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEE-ECCHHHH
Q ss_conf             478645998623336664552135667788798999968870223243476899887799996799099997-3898999
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIR-EFSYNDY  362 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r-~e~~~d~  362 (367)
                      ++...+++|+||+|+++|+|+++..+|++++||+|+|.|+||||++|+|+||++|+|++|++.+++.+.++| ||++.|.
T Consensus       345 ~~~~~~~~v~Gp~C~~~D~l~~~~~LP~l~~GD~L~~~~~GAY~~~~~s~fN~~~~P~~~~v~~~~~~~~ir~~~~~~d~  424 (448)
T 3btn_A          345 DEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEPSAFNDFQRPAIYFMMSFSDWYEMQDAGITSDA  424 (448)
T ss_dssp             --CEEEEEEECTTCSTTCEEEEEEEEECCCTTCEEEESSCCSSCCCCCCGGGTTCCCEEEEEEEHHHHHHHHHTTGGGSG
T ss_pred             CCCEEEEEEEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCHHH
T ss_conf             78757899993077888888806588899999999997987471866587789999818999938847898727955788


Q ss_pred             HHH
Q ss_conf             874
Q gi|254780741|r  363 YNN  365 (367)
Q Consensus       363 ~~~  365 (367)
                      +.+
T Consensus       425 ~~~  427 (448)
T 3btn_A          425 MMK  427 (448)
T ss_dssp             GGT
T ss_pred             HHH
T ss_conf             960


No 15 
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A*
Probab=100.00  E-value=0  Score=525.57  Aligned_cols=335  Identities=16%  Similarity=0.185  Sum_probs=279.2

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC-CC
Q ss_conf             88568977999999999999985336986999541059999999998518748980799998987-36880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~-~~   80 (367)
                      +|||||||++.|++|++++++++  ++++++||+||||++.|++++.+.|+|+||+|.+|+++|+ +|+++++|+|+ |.
T Consensus        54 GTP~yV~d~~~l~~n~~~l~~af--~~~~i~YAvKAN~~~~il~~l~~~G~g~dv~S~~El~~al~aG~~~~~Ii~~gp~  131 (419)
T 2plj_A           54 GAPLLLLDCDVIRQQYRALKNAL--PNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVPADLTIHTHPI  131 (419)
T ss_dssp             CSSEEEEEHHHHHHHHHHHHHHS--TTEEEEEESTTCCCHHHHHHHHHHTCEEEECSHHHHHHHHHTTCCGGGEEECCSS
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             99889988999999999999868--9988999973288699999999839958997999999999759691328989998


Q ss_pred             CCHHHHHHHHCCCC-EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH------
Q ss_conf             78034788613886-89856720599999986123456148996357744310124557864357427888874------
Q gi|254780741|r   81 YKDCEIDAVLSNCD-TIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~-~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~------  153 (367)
                      |+++||+.|++.+. .+++||++||+++..++++.  ++.+|+++....      ..+...+|||++.++..+.      
T Consensus       132 Ks~eel~~Al~~gv~~~~vDs~~el~~l~~~a~~~--~~~iri~~~~~~------~~~~~~~kfG~~~~~~~~~~~~~~~  203 (419)
T 2plj_A          132 KRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDV--ELLVRLSFRNSE------AFADLSKKFGCSPEQALVIIETAKE  203 (419)
T ss_dssp             CCHHHHHHHHHHTCCEEEECSHHHHHTTGGGTTTC--EEEEEBCC---------------CCCSCBCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCC--CCEEEEECCCCC------CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             87476999997498467403287999998752013--420123114653------3333578777689999999999985


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHH----HHCCCCCEEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHC--
Q ss_conf             314960665305656661478999999999898----6508875087533776664455--68078999999875421--
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEF----GHFITQIEWISLGGGIHFTDKD--YPVKDFCQRLKEFSEKY--  225 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~----~~~~~~l~~idiGGG~~~~~~~--~~~~~~~~~i~~~~~~~--  225 (367)
                      ...++.|||||+|||+.+.+.|...++.+.+.+    ++.+..+++|||||||+++|.+  .+++.+++.+.+..+..  
T Consensus       204 ~~l~l~GiH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idiGGG~~i~y~~~~~~~~~~~~~~~~~~~~~~~  283 (419)
T 2plj_A          204 WNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPE  283 (419)
T ss_dssp             TTCEEEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECCCCCCCCSSSCCCCHHHHHHHHHHHHTTSCT
T ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             79957788886467767841257799999987642001024564257317987635655678989999988998764046


Q ss_pred             CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC-CCCCC--CCCCEEEEEECCCCCCCC
Q ss_conf             65045300220145741888788786304-433343333565656640013455-30002--478645998623336664
Q gi|254780741|r  226 SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQES-ATIYP--NTGPYTAMVCGRSCLAGD  301 (367)
Q Consensus       226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~-~~~~~--~~~~~~~~v~G~~C~~~D  301 (367)
                      +++|++||||+++++||+++++|+++|+. +++|+++|+|++.++++.++...+ +....  .....++.|+||+|+++|
T Consensus       284 ~~~l~~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D  363 (419)
T 2plj_A          284 TVHVLAEPGRFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPSVLSGPTCDSVD  363 (419)
T ss_dssp             TCEEEECCCHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTGGGHHHHSCCCCCEEESCCSSCEEEEEEECSSSCTTC
T ss_pred             CCCCCCCCHHHHHHCCEEEEEEEEEEEECCCCEEEEECCCCCCCCCHHHCCCCCCCEECCCCCCCEEEEEEECCCCCCCC
T ss_conf             74421377265140243689999999963883478855751245673441366464463478886415999837978868


Q ss_pred             EEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEEC
Q ss_conf             5521356677887989999688702232434768998877999967
Q gi|254780741|r  302 IFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNV  347 (367)
Q Consensus       302 ~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~  347 (367)
                      +|+++..+|++++||+|+|.|||||+++|+|+||++|+|++|++++
T Consensus       364 ~l~~~~~LP~l~~GD~l~~~~~GAY~~s~~s~fN~~p~p~~v~v~~  409 (419)
T 2plj_A          364 VIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNE  409 (419)
T ss_dssp             EEEEEEEEECCCTTCEEEESSCSSSSGGGCBCGGGCCCCEEEEECC
T ss_pred             EECCCCCCCCCCCCCEEEECCCCHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf             8896628888999999998896633475627688999884899968


No 16 
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00  E-value=0  Score=502.45  Aligned_cols=333  Identities=15%  Similarity=0.169  Sum_probs=270.1

Q ss_pred             CCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEEC-CC
Q ss_conf             885689779999999999999853369869995410599999999985187489807999989873-6880108853-77
Q gi|254780741|r    3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYN-VA   80 (367)
Q Consensus         3 ~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~-~~   80 (367)
                      .|||||||++.|++|+++++.+|  |+++++||+||||++.|++++++.|+|+||+|++|+++|++ ||++++|+|+ |.
T Consensus        16 ~~~fyv~d~~~i~~~~~~~~~~~--p~v~~~YAvKaN~~~~vl~~l~~~G~G~dv~S~~El~~al~~G~~~~~Ii~~g~~   93 (372)
T 2nva_A           16 TKSFYVSSPKIVEDLIDQWTILF--PRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSEIKKVIQIGVSPSRIIFAHTM   93 (372)
T ss_dssp             CSEEEEECHHHHHHHHHHHHHHC--TTEEEEEEGGGCCCHHHHHHHHHTTCEEEECSHHHHHHHHHHTCCGGGEEECCSC
T ss_pred             CCCEEEEEHHHHHHHHHHHHHHC--CCCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf             98689972999999999999878--8986988851189899999999849849996999999999859791249994898


Q ss_pred             CCHHHHHHHHCCC-CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH------H
Q ss_conf             7803478861388-68985672059999998612345614899635774431012455786435742788887------4
Q gi|254780741|r   81 YKDCEIDAVLSNC-DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE------S  153 (367)
Q Consensus        81 ~~~~el~~a~~~~-~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~------~  153 (367)
                      |+++||+.|++.+ .++++||++|++++.+++.+  .++.+|+++.....      .+...++||++..++.+      .
T Consensus        94 K~~~el~~ai~~gv~i~~~ds~~~~~~i~~~~~~--~~~~~~~~~~~~~~------~~~~~~~fg~~~~~~~~~~~~a~~  165 (372)
T 2nva_A           94 KTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPN--CKMILRIRCDDPNA------TVQLGNKFGANEDEIRHLLEYAKQ  165 (372)
T ss_dssp             CCHHHHHHHHHHTCCEEEECSHHHHHHHHHHCTT--CEEEEEBCCCCTTC------SBCCTTTSSBCGGGHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC--CCCCEEEECCCCCC------CCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999999859970026539999999875513--33210110156755------445688777771777999999985


Q ss_pred             HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCCCCCH-HHHHH----HHHHHHHC
Q ss_conf             3149606653056566614789999999998986---5088750875337766644556807-89999----99875421
Q gi|254780741|r  154 EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDKDYPVK-DFCQR----LKEFSEKY  225 (367)
Q Consensus       154 ~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~~~~~~-~~~~~----i~~~~~~~  225 (367)
                      ...++.|+|||+|||+.+.+.|.+.++.+.+++.   +.+.++++|||||||++++.+.+.+ .+.+.    ..+.....
T Consensus       166 ~~l~~~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IdiGGGf~~~y~~~~~~~~~~~~~~~~~~~~~~~~  245 (372)
T 2nva_A          166 LDIEVIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPED  245 (372)
T ss_dssp             TTCCEEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHTCCCCEEECCSCBCCCCC---CCCHHHHHHHHHHHHHCCCT
T ss_pred             CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             69818899986687658768999999987777766675079742899778867388887777459999876543024655


Q ss_pred             CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCC--CCCC---C-CCCCEEEEEECCCCC
Q ss_conf             65045300220145741888788786304-433343333565656640013455--3000---2-478645998623336
Q gi|254780741|r  226 SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQES--ATIY---P-NTGPYTAMVCGRSCL  298 (367)
Q Consensus       226 ~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~~~~~~~--~~~~---~-~~~~~~~~v~G~~C~  298 (367)
                      +++|++||||+||++||+++|+|+++|++ +..++++|+|+++.+.+.+....+  +...   + ++...+++|+||||+
T Consensus       246 ~~~l~~EPGR~lva~ag~llt~V~~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~  325 (372)
T 2nva_A          246 TVTIVAEPGRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEEYVPSVLYGCTCD  325 (372)
T ss_dssp             TCEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEEEESCCTTTTCTHHHHSCCCCCCEESSCCCTTCCEEEEEEECSSSC
T ss_pred             CCEEECCCCEEEECCEEEEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHCCCCCEEEECCCCCCCCEEEEEEEECCCC
T ss_conf             53331377103514646999999999983782268840323575531121104564011036788787778999937988


Q ss_pred             CCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEE
Q ss_conf             66455213566778879899996887022324347689988779999
Q gi|254780741|r  299 AGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVK  345 (367)
Q Consensus       299 ~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~  345 (367)
                      ++|+|+++..+|++++||+|+|.||||||++|+|+||++|+|.++++
T Consensus       326 ~~D~l~~~~~lP~l~~GD~l~~~~~GAY~~s~~s~fN~~~~p~v~~~  372 (372)
T 2nva_A          326 GVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDVYYI  372 (372)
T ss_dssp             TTCEEEEEEEEECCCTTCEEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred             CCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf             47588866317999999999885945234845387889899817969


No 17 
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=100.00  E-value=0  Score=432.84  Aligned_cols=363  Identities=19%  Similarity=0.224  Sum_probs=282.7

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH--------CCCEEEEEEECCCCHHHHHHHHHHC----CEEEEECHHHHHHHHC-
Q ss_conf             88856897799999999999998533--------6986999541059999999998518----7489807999989873-
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN--------AGVKLLLALKCFAAWGMFDTLNQYM----DGTTSSSLYEVMLGHE-   68 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~--------~~~~i~yA~KaN~~~~il~~l~~~g----~g~dv~S~~E~~la~~-   68 (367)
                      .+||+||+|++.|++|+++++.+|..        .+++.+||+||||++.|++.+...|    +|+||+|.+|+.+|++ 
T Consensus        43 ~gtPl~v~~~dil~~ri~~l~~aF~~A~~~~~y~g~y~~~YAvKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~  122 (619)
T 3nzp_A           43 YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAY  122 (619)
T ss_dssp             CCSCEEEECHHHHHHHHHHHHHHHHHHHHHTTCCSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHH
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHC
T ss_conf             99988997089999999999999999999808788818998862489999999999837425881899799999999967


Q ss_pred             CCCCCCEEECCCCCHHHHHH-----HHCCCCEEEECCCHHHHHHHHHHHCC---CCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             68801088537778034788-----61388689856720599999986123---45614899635774431012455786
Q gi|254780741|r   69 KFGGETHAYNVAYKDCEIDA-----VLSNCDTIIFNTVSQLNKFKDKAQKL---HKKIGLRINPSVSYSKFILADPNRPF  140 (367)
Q Consensus        69 g~~~~~i~~~~~~~~~el~~-----a~~~~~~i~iDs~~El~~i~~~a~~~---~~~I~lRinP~~~~~~~~~~~~~~~~  140 (367)
                      |+++++|++||.++++.++.     .+..+.+|++||++||+++.+++++.   ..+|++|+||.. .+++....+|+..
T Consensus       123 g~~~~~Ii~nG~kk~e~~~~a~l~~~l~~~v~ivvDs~~EL~~I~~~a~~~~~~~~~IglRi~~~~-~~~~~~~~tgg~~  201 (619)
T 3nzp_A          123 NNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHS-AGVGIWAKSGGIN  201 (619)
T ss_dssp             SCTTSEEEECSCCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTSCSCCCEEEEEBCCTT-C------------
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEECCCC-CCCCCCCCCCCCC
T ss_conf             989897998997885999999998611888488879999999999999985499876521323675-5667422468875


Q ss_pred             CCCCCCHHHHHHHH--------HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC----CCCCEEEEECCCCCCCCC-
Q ss_conf             43574278888743--------14960665305656661478999999999898650----887508753377666445-
Q gi|254780741|r  141 SRLGEKCKDKIESE--------IKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHF----ITQIEWISLGGGIHFTDK-  207 (367)
Q Consensus       141 skfG~~~~~~~~~~--------~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~----~~~l~~idiGGG~~~~~~-  207 (367)
                      ||||++..++.+..        ..++.|+|||+|||+.+.+.|+++++.+.+++.++    ++++++|||||||+++|. 
T Consensus       202 SKFGl~~~ei~~~i~~l~~~~~l~~l~GlHfHiGSQi~d~~~~~~al~~~~~l~~el~~~g~~~l~~LDIGGGlgV~Y~~  281 (619)
T 3nzp_A          202 SKFGLTSTELIEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQ  281 (619)
T ss_dssp             -CCSBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHHTTCTTCCEEEEESCBCCCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf             65786378899999999865776706899982587756489999999999999999887489776187504876757864


Q ss_pred             -------CCCCHHHHHH----HHHHHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCC
Q ss_conf             -------5680789999----99875421---65045300220145741888788786304-433343333565656640
Q gi|254780741|r  208 -------DYPVKDFCQR----LKEFSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDY  272 (367)
Q Consensus       208 -------~~~~~~~~~~----i~~~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~-~~~~v~vd~g~~~~~~~~  272 (367)
                             +++++++++.    ++++++++   +++|++||||||||+||++|++|+++|++ +.+++++|+|++++++|.
T Consensus       282 ~~~~~s~~y~l~eya~~Iv~~~~~~~~~~~~~~p~Ii~EPGRalVA~agvLVt~Vi~vK~~~~~~~~~vd~g~~~~lrp~  361 (619)
T 3nzp_A          282 FKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDE  361 (619)
T ss_dssp             SSSCCSCSSCHHHHHHHHHHHHHHHHHHTTCCCCEEEECCCHHHHGGGEEEEEEEEEEECCCCCGGGSCCCSSCCHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCEEEEEEEEEEEECCCCCEEEECCCCCCHHHHH
T ss_conf             22234454329999999999999999980899973999257888630428999999997248875246327777167799


Q ss_pred             CCCCCCC-------------------------------------------------------------------------
Q ss_conf             0134553-------------------------------------------------------------------------
Q gi|254780741|r  273 LLYQESA-------------------------------------------------------------------------  279 (367)
Q Consensus       273 ~~~~~~~-------------------------------------------------------------------------  279 (367)
                      ++..++.                                                                         
T Consensus       362 Ly~~~h~i~~~~~~E~~~da~~~~~~~~~~f~~g~l~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~  441 (619)
T 3nzp_A          362 LYDLYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYL  441 (619)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC-------------CCSBEEE
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHE
T ss_conf             99988734866147899999999999999996488789999999999999999998750356793777777777776624


Q ss_pred             -------------------CCCC----C-CCCEEEEEECCCCCCCCEEEEC----CCCCCCCCCC---EEEEECCCCHHH
Q ss_conf             -------------------0002----4-7864599862333666455213----5667788798---999968870223
Q gi|254780741|r  280 -------------------TIYP----N-TGPYTAMVCGRSCLAGDIFGEF----HFEKPVKIGD---RISFEDVAGYNI  328 (367)
Q Consensus       280 -------------------~~~~----~-~~~~~~~v~G~~C~~~D~l~~~----~~~~~l~~GD---~l~i~~~GAY~~  328 (367)
                                         .++|    + +......+++-||+|.+.+-..    ..++++..++   +|.|..+|||+.
T Consensus       442 ~NfS~fqslpD~Wai~Q~fpi~Pi~rl~e~p~~~~~l~diTCDSDg~i~~~~~~~l~lh~~~~~~e~y~lg~Fl~GAYQe  521 (619)
T 3nzp_A          442 VNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQE  521 (619)
T ss_dssp             ESSCTTTTCHHHHHSSCCCCEEESSCTTSCCCCBBCCEESCSCTTSBCCCCSSSCCBCCCCCTTTSCCEEEECSCSSSTT
T ss_pred             ECHHHHCCCCCHHHHCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHH
T ss_conf             12034305740565446442624523688863479981577389996444566775578878899860899984448679


Q ss_pred             HHCCCCCCCCCCEEEEE--ECCCCEEEE---EECCHHHHHHHC
Q ss_conf             24347689988779999--679909999---738989998742
Q gi|254780741|r  329 NRKNWFNGINMPTIAVK--NVDGTIKAI---REFSYNDYYNNL  366 (367)
Q Consensus       329 ~~~~~Fn~~~~P~~v~~--~~~g~~~~~---r~e~~~d~~~~~  366 (367)
                      .|+...|-++.|.+|.+  +++| ..+.   +.+|.+|+++-+
T Consensus       522 ~lg~~HnLfg~~~~v~v~~~~~g-~~~~~~~~g~~~~~vl~~~  563 (619)
T 3nzp_A          522 VLGMKHNLFTHPTEAIISINEKG-YEVEGIIEAQSILDTLEDL  563 (619)
T ss_dssp             TTCCCTTSCCCCEEEEEEECSSC-EEEEEEECCCCHHHHHHHT
T ss_pred             HHHHCCCCCCCCCEEEEEECCCC-CEEEEEECCCCHHHHHHHC
T ss_conf             87435366899988999977997-4898852688899999873


No 18 
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.10A {Escherichia coli}
Probab=100.00  E-value=0  Score=409.10  Aligned_cols=364  Identities=14%  Similarity=0.122  Sum_probs=277.6

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH-------C-CCEEEEEEECCCCHHHHHHHHHHC--CEEEEECHHHHHHHHC-CC
Q ss_conf             88856897799999999999998533-------6-986999541059999999998518--7489807999989873-68
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN-------A-GVKLLLALKCFAAWGMFDTLNQYM--DGTTSSSLYEVMLGHE-KF   70 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~-------~-~~~i~yA~KaN~~~~il~~l~~~g--~g~dv~S~~E~~la~~-g~   70 (367)
                      ++||++|++++.|+++++++..+|..       + .++++||+||||++.|++.+.+.|  +|+||+|.+|+.+|++ ++
T Consensus        84 ~~~P~~irf~diL~~rir~l~~aF~~Ai~~~~Y~g~y~~~YAvKAN~~~~VL~~l~~~G~~~GlDvaS~gEL~~AL~~g~  163 (666)
T 3nzq_A           84 QRLPALFCFPQILQHRLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAG  163 (666)
T ss_dssp             CCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEGGGCCCHHHHHHHHTSSSCEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCC
T ss_conf             99998996479999999999999999999809998779999964589899999999859980189818999999997289


Q ss_pred             CCCCEEE-CCCCCHHHHHHHHC-----CCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             8010885-37778034788613-----8868985672059999998612345--61489963577443101245578643
Q gi|254780741|r   71 GGETHAY-NVAYKDCEIDAVLS-----NCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSR  142 (367)
Q Consensus        71 ~~~~i~~-~~~~~~~el~~a~~-----~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~sk  142 (367)
                      ++++|+| ||.|++++++.|+.     ....+++||++||+++.+.+++.+.  +|++|+||.. .+.+....+|+..||
T Consensus       164 ~p~~II~~n~~K~~e~I~~Al~~~~~~~~v~iviDsl~EL~~I~~~a~~l~v~~rIglRi~l~~-~~~~~~~~Tgg~~SK  242 (666)
T 3nzq_A          164 MTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLAS-QGSGKWQSSGGEKSK  242 (666)
T ss_dssp             TSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTCCCCEEEEBCCSS-SCSSTTCSSSSSCCC
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCC-CCCCCCCCCCCCCCC
T ss_conf             9871998899779899999998288771013441889999999999997298861677614665-677776555887677


Q ss_pred             CCCCHHHHHHHH-------H-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCCCC---
Q ss_conf             574278888743-------1-49606653056566614789999999998986---508875087533776664455---
Q gi|254780741|r  143 LGEKCKDKIESE-------I-KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTDKD---  208 (367)
Q Consensus       143 fG~~~~~~~~~~-------~-~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~~~---  208 (367)
                      ||++.+++.+..       . ..+.|+|||+|||+.+...|.++++.+.+++.   +.+..+++|||||||+++|.+   
T Consensus       243 FGi~~~ei~~~i~~lk~~~~l~~L~GLHfHIGSQi~d~~~~~~al~~~~~l~~el~~~G~~l~~IDIGGGfgV~Y~~~~~  322 (666)
T 3nzq_A          243 FGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRS  322 (666)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCCCCEEECCSCCCCCSSSSCS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCC
T ss_conf             87788999999999986587775468998668764426999999999999999986539775288617745646676444


Q ss_pred             -------CCCHHHHHH----HHHHHHHC---CCEEEEEHHHHCCCCCEEEEEEEEEEECCC-CCCCCCCCCCCCC-----
Q ss_conf             -------680789999----99875421---650453002201457418887887863044-3334333356565-----
Q gi|254780741|r  209 -------YPVKDFCQR----LKEFSEKY---SVQIYLEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAH-----  268 (367)
Q Consensus       209 -------~~~~~~~~~----i~~~~~~~---~~~l~iEPGR~lv~~ag~lv~~V~~~K~~~-~~~v~vd~g~~~~-----  268 (367)
                             ++++++++.    +++.++++   +++|++||||||||+||++|++|+++|++. ......+..++..     
T Consensus       323 ~~~~s~ny~leeya~~Iv~~l~~~~~~~~v~~p~Li~EPGRaLVA~agvLVt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~  402 (666)
T 3nzq_A          323 QSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMW  402 (666)
T ss_dssp             SSTTCCSSCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHTTSEEEEEEEEEEECCCCCCCCCCCTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHCCEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHH
T ss_conf             33210343399999999999999999639999869987877775212589999999723788888888543647789999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780741|r  269 --------------------------------------------------------------------------------  268 (367)
Q Consensus       269 --------------------------------------------------------------------------------  268 (367)
                                                                                                      
T Consensus       403 ~~~~~i~~~~~~~~~~E~~~da~~~~~~~~~~f~~G~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~  482 (666)
T 3nzq_A          403 ETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQERMA  482 (666)
T ss_dssp             HHHHHHSSSSCSTTHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCTTSGGGHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             99999765404304899999999999999998744866489999999999999999998742112458588999998765


Q ss_pred             ------------CCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCEEE---E------CCCCCCCCCCC--EEEE
Q ss_conf             ------------664001-3455300----02478645998623336664552---1------35667788798--9999
Q gi|254780741|r  269 ------------VPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDIFG---E------FHFEKPVKIGD--RISF  320 (367)
Q Consensus       269 ------------~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~l~---~------~~~~~~l~~GD--~l~i  320 (367)
                                  +|+.|- .+..|++    +..+......+++-||+|.+.+-   .      ...+++++.|+  +|.|
T Consensus       483 ~~y~~NfS~fqslPD~WaI~Q~Fpi~Pi~rl~e~p~~~~~l~diTCDSDG~i~~f~~~~~~~~~l~lh~~~~~e~yylg~  562 (666)
T 3nzq_A          483 DKMYVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGF  562 (666)
T ss_dssp             EEEEESSCHHHHCTHHHHSCCCCCEEESSCTTSCCCEEEEEEESCSSTTCBCCCEEETTEEESSEEECSCCTTSCCEEEE
T ss_pred             HHEEEEHHHHCCCCHHHHHCCCCEEEEHHHCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf             66155025630474066544545162243448986257899445648999720111776665775688789899767999


Q ss_pred             ECCCCHHHHHCCCCCCCCCCEEEE--EECCCCEEEE---EECCHHHHHHHC
Q ss_conf             688702232434768998877999--9679909999---738989998742
Q gi|254780741|r  321 EDVAGYNINRKNWFNGINMPTIAV--KNVDGTIKAI---REFSYNDYYNNL  366 (367)
Q Consensus       321 ~~~GAY~~~~~~~Fn~~~~P~~v~--~~~~g~~~~~---r~e~~~d~~~~~  366 (367)
                      ..+|||+.+|+...|-++.|.+|.  .++||.+.+.   +..|.+|+++-+
T Consensus       563 Fl~GAYQe~lG~~HNLfg~~~~v~v~~~~~g~~~~~~~~~g~t~~~vL~~v  613 (666)
T 3nzq_A          563 FMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYV  613 (666)
T ss_dssp             CSCCSSCGGGCCCTTSCCCCEEEEEEECTTSCEEEEEEECCCBHHHHHHHT
T ss_pred             EECCHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHC
T ss_conf             863473687710535789997799998699988999963689899999874


No 19 
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=100.00  E-value=0  Score=401.35  Aligned_cols=364  Identities=14%  Similarity=0.123  Sum_probs=272.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHH-------C-CCEEEEEEECCCCHHHHHHHHHH-------CCEEEEECHHHHHHH
Q ss_conf             88856897799999999999998533-------6-98699954105999999999851-------874898079999898
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKN-------A-GVKLLLALKCFAAWGMFDTLNQY-------MDGTTSSSLYEVMLG   66 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~-------~-~~~i~yA~KaN~~~~il~~l~~~-------g~g~dv~S~~E~~la   66 (367)
                      ++||++|++++.|+++++++..+|..       + ..+.+||+||||++.|++.+.+.       +.|+||+|.+|+.+|
T Consensus        62 ~~~P~lirf~diL~~ri~~l~~aF~~Ai~~~~Y~g~y~~~YavKaN~~~~Vle~l~~~G~~~e~~~~GlDv~S~~EL~~a  141 (648)
T 3n2o_A           62 LNVPVLVRFPQILHQRVHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAV  141 (648)
T ss_dssp             CCSSEEEECHHHHHHHHHHHHHHHHHHHHHHTCSSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHH
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHH
T ss_conf             99988996449999999999999999999739998637998873579999999999759974345664287489999999


Q ss_pred             HC-CCCCCCEEEC-CCCCHHHHHHHHC-----CCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCC
Q ss_conf             73-6880108853-7778034788613-----8868985672059999998612345--614899635774431012455
Q gi|254780741|r   67 HE-KFGGETHAYN-VAYKDCEIDAVLS-----NCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPN  137 (367)
Q Consensus        67 ~~-g~~~~~i~~~-~~~~~~el~~a~~-----~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~  137 (367)
                      ++ |+++++|+|+ |.|++++++.|+.     .+..+++||++||++|.+++++.+.  +|++||||.....++ ...+|
T Consensus       142 L~~g~~~~~II~~n~~K~~e~I~~Al~~~~~~~~viiviDs~~EL~~I~~ia~~~~~~~~IglRIn~~~~~~~~-~~~tg  220 (648)
T 3n2o_A          142 LAMAQHASSVIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRLASQGAGK-WQASG  220 (648)
T ss_dssp             HHHTSSSCCEEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTCCCEEEEEBCCSTTSTTT-TCSSS
T ss_pred             HHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-CCCCC
T ss_conf             96599976178789969999999999808876572787489999999999999709985599998568667887-52337


Q ss_pred             CCCCCCCCCHHHHHHHHH--------CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCCC
Q ss_conf             786435742788887431--------49606653056566614789999999998986---5088750875337766644
Q gi|254780741|r  138 RPFSRLGEKCKDKIESEI--------KNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG---HFITQIEWISLGGGIHFTD  206 (367)
Q Consensus       138 ~~~skfG~~~~~~~~~~~--------~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~---~~~~~l~~idiGGG~~~~~  206 (367)
                      +..||||++.+++.+...        ..+.|+|||+|||+.+...|+++++.+.+++.   +.+..+++|||||||+++|
T Consensus       221 g~~SKFGl~~~ei~~~l~~l~~~~~l~~l~gLHfHiGSQI~d~~~~~~al~e~~~l~~eL~k~G~~l~~IDIGGGlgV~Y  300 (648)
T 3n2o_A          221 GEKSKFGLSASQVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDY  300 (648)
T ss_dssp             SCCCCCCBCHHHHHHHHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCBCCCT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf             87677799989999999997655665504579997587523289999999999999999996199986898688546567


Q ss_pred             CC----------CCCHHHHH----HHHHHHHHCC---CEEEEEHHHHCCCCCEEEEEEEEEEECCCCCCC----------
Q ss_conf             55----------68078999----9998754216---504530022014574188878878630443334----------
Q gi|254780741|r  207 KD----------YPVKDFCQ----RLKEFSEKYS---VQIYLEPGEAIVTNTTTLNTTVLDISENIKNLV----------  259 (367)
Q Consensus       207 ~~----------~~~~~~~~----~i~~~~~~~~---~~l~iEPGR~lv~~ag~lv~~V~~~K~~~~~~v----------  259 (367)
                      .+          ++++++++    .+++.+++++   ++|++||||||||+||++|++|+++|+.....+          
T Consensus       301 ~~~~~~~~~s~~y~~eeya~~Iv~~i~~~~~~~~~~~p~Ii~EpGRalVA~agvLVt~VidvK~~~~~~~~~~~~~~~~~  380 (648)
T 3n2o_A          301 DGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISNVIGTETYKPETVTEPEEDFPLL  380 (648)
T ss_dssp             TSCCCSSTTSCSCCHHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHGGGEEEEEEEEEEECCCCCCCCCCCTTCCHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf             65456676310356999999999999999997299998799937789955875378998886226866678665542056


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q gi|254780741|r  260 --------------------------------------------------------------------------------  259 (367)
Q Consensus       260 --------------------------------------------------------------------------------  259 (367)
                                                                                                      
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~l~l~~ra~~e~~~~~i~~~~~~~~~~~~~~~~~~~~~l  460 (648)
T 3n2o_A          381 LNNMWRSWLNLHNGTDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDEL  460 (648)
T ss_dssp             HHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             89999999998632557789999999999999999986148878899999999999999999998653034681889999


Q ss_pred             --------CCCCCCCCCCCCCCC-CCCCCCC----CCCCCCEEEEEECCCCCCCCEE---EE------CCCCCCCCCC--
Q ss_conf             --------333356565664001-3455300----0247864599862333666455---21------3566778879--
Q gi|254780741|r  260 --------IVDSSVEAHVPDYLL-YQESATI----YPNTGPYTAMVCGRSCLAGDIF---GE------FHFEKPVKIG--  315 (367)
Q Consensus       260 --------~vd~g~~~~~~~~~~-~~~~~~~----~~~~~~~~~~v~G~~C~~~D~l---~~------~~~~~~l~~G--  315 (367)
                              .++-|+..-+|+.|- .+..|++    +.........+++-||+|.+.+   ..      ...+++++.|  
T Consensus       461 ~~~l~~~y~~NfS~FqslPD~Wai~Q~Fpi~Pl~rl~e~p~~~~~l~diTCDSDG~i~~fi~~~~~~~~l~lh~~~~~e~  540 (648)
T 3n2o_A          461 SERLADKFFVNFSLFQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNEDEP  540 (648)
T ss_dssp             HHHTCEEEEESSCHHHHCHHHHHHCCCCCEEESSCGGGTTSEEEEEEESSSCTTCBCCCEEETTEEESSEEECCCCTTSC
T ss_pred             HHHHHHHHCCCHHHHHCCCHHHHHCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             98876787014023200752776555462230423688760489974577179997002458776645757888899997


Q ss_pred             CEEEEECCCCHHHHHCCCCCCCCCCEEEEE--ECCCCEEEE---EECCHHHHHHHC
Q ss_conf             899996887022324347689988779999--679909999---738989998742
Q gi|254780741|r  316 DRISFEDVAGYNINRKNWFNGINMPTIAVK--NVDGTIKAI---REFSYNDYYNNL  366 (367)
Q Consensus       316 D~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~--~~~g~~~~~---r~e~~~d~~~~~  366 (367)
                      =+|.|..+|||+-+++..-|-++.|.+|.+  ++||.+.+.   +..|.+|+++-+
T Consensus       541 yylG~Fl~GAYQe~lG~~HnLfg~~~~v~v~~~~~g~~~~~~~~~g~t~~~vL~~v  596 (648)
T 3n2o_A          541 YLMGFFLVGAYQEILGDMHNLFGDTHSVVVNVGDQGEINIDFINEGDTVEDMMRYV  596 (648)
T ss_dssp             CEEEEESCCSSHHHHCCCGGGCCCCEEEEEEECTTSCEEEEEEECCCBHHHHHHHT
T ss_pred             CEEEEEECCHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHC
T ss_conf             77999853572687622533589998799998799988999852689899999873


No 20 
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.85  E-value=6.4e-17  Score=129.64  Aligned_cols=317  Identities=16%  Similarity=0.112  Sum_probs=185.0

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHHHH-CCCCCCCEEECC
Q ss_conf             8885689779999999999999853369869995410599999999985187-48980799998987-368801088537
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVMLGH-EKFGGETHAYNV   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~la~-~g~~~~~i~~~~   79 (367)
                      |+||+.|+|++.|++|++.++......++++.--+||+..+.|++.+-+.|. |+.|+++.|++..+ +|+. ..++.+|
T Consensus        44 l~tP~lvid~~~l~~Ni~~m~~~~~~~gv~lrph~Kth~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~Gi~-~illa~~  122 (426)
T 3gwq_A           44 VSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHGGVS-RVLMANQ  122 (426)
T ss_dssp             BCSSEEEEEHHHHHHHHHHHHHHHHHHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHTTCC-EEEECSC
T ss_pred             CCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCC-CEEEECC
T ss_conf             899739984999999999999988756974999811146499999999779987998609999999976999-8799467


Q ss_pred             CCCHHHHHHH---HCC---CCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH-HHHH-
Q ss_conf             7780347886---138---8689856720599999986123456148996357744310124557864357427-8888-
Q gi|254780741|r   80 AYKDCEIDAV---LSN---CDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKC-KDKI-  151 (367)
Q Consensus        80 ~~~~~el~~a---~~~---~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~-~~~~-  151 (367)
                      ...++.++.+   ...   ...+.+||.++++.+.+.+++.+.++.+.|..+.+            .+|.|+.. ++.. 
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDtG------------~~R~G~~~~e~~~~  190 (426)
T 3gwq_A          123 LVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP------------GGRTGVRDAAQRNA  190 (426)
T ss_dssp             CCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT------------TSSSSBCSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCCC------------CCCCCCCCHHHHHH
T ss_conf             789799999999863557405999878999999999887568068987650567------------76566666589999


Q ss_pred             --HHH-----HCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             --743-----14960665305656661478----999999999898650--88750875337766644556807899999
Q gi|254780741|r  152 --ESE-----IKNVNGLMFHNNCENKSFLC----FSAMLKNIEKEFGHF--ITQIEWISLGGGIHFTDKDYPVKDFCQRL  218 (367)
Q Consensus       152 --~~~-----~~~i~Gih~H~gs~~~~~~~----~~~~l~~~~~~~~~~--~~~l~~idiGGG~~~~~~~~~~~~~~~~i  218 (367)
                        +..     ...+.|++.|.|+.. +...    .++....+.++.++.  ......+.-||..+       ....++.+
T Consensus       191 l~~~i~~~~~~l~l~Gi~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~-------~~~~~~~~  262 (426)
T 3gwq_A          191 VLEAITRYPDTLKLAGVELYEGVLK-EEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAW-------YDVVAEEF  262 (426)
T ss_dssp             HHHHHHTSTTTEEEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTT-------HHHHHHHT
T ss_pred             HHHHHHHCCCCCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCC-------HHHHCCCC
T ss_conf             9999985778865669985153347-734399999999999999999853278870464468854-------01003310


Q ss_pred             HHHHHHCCCEEEEEHHHHCCC---------------------------CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             987542165045300220145---------------------------74188878878630443334333356565664
Q gi|254780741|r  219 KEFSEKYSVQIYLEPGEAIVT---------------------------NTTTLNTTVLDISENIKNLVIVDSSVEAHVPD  271 (367)
Q Consensus       219 ~~~~~~~~~~l~iEPGR~lv~---------------------------~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~  271 (367)
                      ............+.||.|+..                           .+...+++|..+++  ..++++|.|......+
T Consensus       263 ~~~~~~~~~~~~vrpG~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~v~s~~~--~~~~~v~~G~~~~~~d  340 (426)
T 3gwq_A          263 VKASETGKVEVVLRPGCYLTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYVQSIPE--PDRAIIGLGKRDSAFD  340 (426)
T ss_dssp             HHHHHSSSEEEEECCCCSSSSCSHHHHHHHHHHC----------CCCCCCEEEEEEEEEEEE--TTEEEESCCTTTSCGG
T ss_pred             CCCCCCCCCEEEECCEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECC--CCEEEECCCCEEEEEC
T ss_conf             02556764026973447997046311102332001351002333123201688778976556--8759981654687504


Q ss_pred             CCCCCCCCCCC--CC------CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEE
Q ss_conf             00134553000--24------78645998623336664552135667788798999968870223243476899887799
Q gi|254780741|r  272 YLLYQESATIY--PN------TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIA  343 (367)
Q Consensus       272 ~~~~~~~~~~~--~~------~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v  343 (367)
                      ... ++.....  ..      .....+.|.|  |...-.+.+....+++++||.|.|..-=+ |    ..||.+  +..+
T Consensus       341 ~g~-~~~~~~~~~g~~~~~~~~~~~~~~i~g--~~dqH~~i~~~~~~~l~vGD~V~~~p~H~-c----~t~~~~--~~~~  410 (426)
T 3gwq_A          341 AGM-PEPARHYRPGNEAPRDIAASEGWEIFG--LMDQHAYLRIPAGADLKVGDMIAFDISHP-C----LTFDKW--RQVL  410 (426)
T ss_dssp             GCC-CEEEEEECTTSSSCEECCGGGCCEEEE--ECSSCEEEECCTTCSCCTTCEEEEECSSG-G----GGGGGC--SEEE
T ss_pred             CCC-CCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCCEEEECCCCCCCCCCCEEEEECCCC-C----CCHHHC--CEEE
T ss_conf             677-756210235666763013799827989--84772089878999899999999982878-8----155519--8899


Q ss_pred             EEECCCCE
Q ss_conf             99679909
Q gi|254780741|r  344 VKNVDGTI  351 (367)
Q Consensus       344 ~~~~~g~~  351 (367)
                      ++++++.+
T Consensus       411 ~vd~~~~v  418 (426)
T 3gwq_A          411 VVDPAYRV  418 (426)
T ss_dssp             EECTTSBE
T ss_pred             EEECCCEE
T ss_conf             99799969


No 21 
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.74  E-value=7.7e-15  Score=115.95  Aligned_cols=311  Identities=18%  Similarity=0.111  Sum_probs=180.7

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCC-EEEEECHHHHHHHH-CCCCCCCEEECC
Q ss_conf             8885689779999999999999853369869995410599999999985187-48980799998987-368801088537
Q gi|254780741|r    2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMD-GTTSSSLYEVMLGH-EKFGGETHAYNV   79 (367)
Q Consensus         2 i~TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~~~~il~~l~~~g~-g~dv~S~~E~~la~-~g~~~~~i~~~~   79 (367)
                      ++||++++|++.|++|++.++......++++...+||+..+.|++.+.+.|. ++.|+++.|++..+ .|++.-.+.+..
T Consensus        12 ~dTP~lviDl~~l~~N~~~~~~~~~~~~~~l~~~vK~h~~~~ia~~l~~~G~~~~~va~~~Ea~~l~~~g~~~~l~~~~~   91 (376)
T 3llx_A           12 PDTPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYTDLLYAVGI   91 (376)
T ss_dssp             SCSSEEEEEHHHHHHHHHHHHHHHHHTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCCEEEEEEEC
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCEEEECCC
T ss_conf             79966998699999999999986535598399996413799999999978999899805999999996799866981467


Q ss_pred             CC-CHHHHHHHHCCC--CEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH-----HH
Q ss_conf             77-803478861388--68985672059999998612345614899635774431012455786435742788-----88
Q gi|254780741|r   80 AY-KDCEIDAVLSNC--DTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD-----KI  151 (367)
Q Consensus        80 ~~-~~~el~~a~~~~--~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~-----~~  151 (367)
                      .. +..++.++....  ..+.+||.+.++.+.+.+++.+.++.+.|..+.+            ..|.|+..++     +.
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~vds~~~~~~l~~~a~~~~~~~~v~l~iD~G------------~~R~G~~~~~~~~~~~~  159 (376)
T 3llx_A           92 APAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSD------------DHRGGIKPSDSKLLTIA  159 (376)
T ss_dssp             CGGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS------------SSSSCBCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECC------------CCCCCCCHHHHHHHHHC
T ss_conf             805679999987348748999777999999999998749825899875058------------87577890599999730


Q ss_pred             HHHHCCCEEEEECCCCC--CCCHHH----HH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CC-CCHHHHHHHHH
Q ss_conf             74314960665305656--661478----99---9999999898650887508753377666445-56-80789999998
Q gi|254780741|r  152 ESEIKNVNGLMFHNNCE--NKSFLC----FS---AMLKNIEKEFGHFITQIEWISLGGGIHFTDK-DY-PVKDFCQRLKE  220 (367)
Q Consensus       152 ~~~~~~i~Gih~H~gs~--~~~~~~----~~---~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~-~~-~~~~~~~~i~~  220 (367)
                      +....++.|++.|-|..  ..+.+.    ..   +.+..+.+.+.+.+..+.+++.||....... +. .+.        
T Consensus       160 ~~~~l~~~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~g~t~~~~~~~~~~~i~--------  231 (376)
T 3llx_A          160 KTLGEHFTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDIS--------  231 (376)
T ss_dssp             HHHGGGEEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCSCCTTCS--------
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCCCCCCE--------
T ss_conf             121100033102333124569878999999999999999875576449985189817970465640378853--------


Q ss_pred             HHHHCCCEEEEEHHHHCC--------------CCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCC----CCCC
Q ss_conf             754216504530022014--------------574188878878630443334333356565664001-345----5300
Q gi|254780741|r  221 FSEKYSVQIYLEPGEAIV--------------TNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLL-YQE----SATI  281 (367)
Q Consensus       221 ~~~~~~~~l~iEPGR~lv--------------~~ag~lv~~V~~~K~~~~~~v~vd~g~~~~~~~~~~-~~~----~~~~  281 (367)
                               .+.||.|+.              ..+...+++|+.++. ..+++++|+|......+... ...    +...
T Consensus       232 ---------~lr~G~~~~~d~~~~~~~~~~~~~~a~~v~~~vv~~~~-~~~~~~~~~G~~a~~~d~g~~~~~~~~~~g~~  301 (376)
T 3llx_A          232 ---------EVRAGVYTTFDLVMKNIGVCDFSHIAMSVVTTVIGHNK-EKNWLLTDSGWMALSRDSGTAGQNRDFGYGQV  301 (376)
T ss_dssp             ---------EECCCGGGTCCHHHHHHTSCCGGGCCEEEEEEEEEEET-TTTEEEESCCHHHHCSCCGGGGSSSCCBTCEE
T ss_pred             ---------EECCCCCCCCCHHHHCCCCCCCCCCCEEEEEEEEEECC-CCCEEEECCCCEEEECCCCCCCCCEECCCCCC
T ss_conf             ---------75654402368666324658612111389999995237-88767743653010024677666400126722


Q ss_pred             CCCCCC-EEEEEECCCCCCCCEEEE-C-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCC
Q ss_conf             024786-459986233366645521-3-5667788798999968870223243476899887799996799
Q gi|254780741|r  282 YPNTGP-YTAMVCGRSCLAGDIFGE-F-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDG  349 (367)
Q Consensus       282 ~~~~~~-~~~~v~G~~C~~~D~l~~-~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g  349 (367)
                      .+..+. .+....+.+++++=++-- + ...+++++||.|.|...=+ |.    .+|.+  +..++++++.
T Consensus       302 ~~~~g~~~~~~~~~~~s~EH~iv~~~~~~~~~~l~VGD~v~l~p~H~-c~----t~~~~--~~~~vv~~~~  365 (376)
T 3llx_A          302 CKIDGSVLDGLCVNSTSQEHGVIELSDAYQLEDFPVGHQLRIMPNHA-CA----TAAMH--PVYHVLMSDG  365 (376)
T ss_dssp             ECTTSCEEEEEEBCEECSSCEEEECCTTCCGGGSCTTCEEEEECSCH-HH----HHTTC--SEEEEECTTS
T ss_pred             CCCCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCEEEEECCCC-CH----HHHCC--CEEEEEECCE
T ss_conf             36778878982894104764279778987667899998999974863-75----67708--8799999998


No 22 
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.59  E-value=1.6e-11  Score=94.05  Aligned_cols=292  Identities=13%  Similarity=0.091  Sum_probs=167.7

Q ss_pred             CCCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCE
Q ss_conf             88568-97799999999999998533698699954105----9999999998518-7489807999989873-6880108
Q gi|254780741|r    3 KTPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETH   75 (367)
Q Consensus         3 ~TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i   75 (367)
                      +++.| -.|.+.|+.|++.+++..  ++.+++--+|||    -...|.+.+.+.| .+|-|+++.|+...++ |.....+
T Consensus         5 ~~r~w~EIdl~ai~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~il   82 (386)
T 1vfs_A            5 PTRVYAEIDLDAVRANVRALRARA--PRSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGIQGRIM   82 (386)
T ss_dssp             CSSEEEEEEHHHHHHHHHHHHTTS--TTSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSEEE
T ss_pred             CCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCEE
T ss_conf             871799986999999999999768--998399999250463879999999998698999981399999999718999858


Q ss_pred             EECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             853777803478861388689856720599999986123456--148996357744310124557864357427888874
Q gi|254780741|r   76 AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES  153 (367)
Q Consensus        76 ~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~  153 (367)
                      ++++. .++++..+.+....+++.|..+++.+.+.++..+.+  |-|.|+            ||  .+|+|+..+++.+.
T Consensus        83 il~~~-~~~~~~~~~~~~~~~~i~s~~~l~~~~~~a~~~~~~~~vhlkiD------------TG--M~RlG~~~~e~~~~  147 (386)
T 1vfs_A           83 CWLWT-PGGPWREAIETDIDVSVSGMWALDEVRAAARAAGRTARIQLKAD------------TG--LGRNGCQPADWAEL  147 (386)
T ss_dssp             ECCCC-TTCCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBC------------SS--CCSSSBCHHHHHHH
T ss_pred             EEECC-CCHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEEC------------CC--CCCCCCCHHHHHHH
T ss_conf             99448-70589999860731354759999999999986499824999951------------67--78678583788999


Q ss_pred             H----------HCCCEEEEECCCCCC-CCHHHHHHHHHHHH---HHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHH
Q ss_conf             3----------149606653056566-61478999999999---89865088750875337766---6445568078999
Q gi|254780741|r  154 E----------IKNVNGLMFHNNCEN-KSFLCFSAMLKNIE---KEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQ  216 (367)
Q Consensus       154 ~----------~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~---~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~  216 (367)
                      .          ...+.|+..|..+.. .+.+.....++...   +.+.+.+....++.++..-+   .+...++.     
T Consensus       148 ~~~~~~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~l~~~~~~~d~-----  222 (386)
T 1vfs_A          148 VGAAVAAQAEGTVQVTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDL-----  222 (386)
T ss_dssp             HHHHHHHHHTTSEEEEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSE-----
T ss_pred             HHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCCC-----
T ss_conf             999998621796427999864455577530678999999999999999717886156515863201784014874-----


Q ss_pred             HHHHHHHHCCCEEE---EEHHHHCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99987542165045---30022014574188878878630-------44-3--------334333356565664001345
Q gi|254780741|r  217 RLKEFSEKYSVQIY---LEPGEAIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYLLYQE  277 (367)
Q Consensus       217 ~i~~~~~~~~~~l~---iEPGR~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~~~~~  277 (367)
                       ++-=..-|+..-.   ..|-..=..++..+.++|+.++.       ++ .        .++++..|..+-++-.+.. .
T Consensus       223 -vR~Gi~lYG~~p~~~~~~~~~~~lkpv~~l~a~ii~v~~l~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~-~  300 (386)
T 1vfs_A          223 -VRTGLAVYGVSPSPELGTPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASG-R  300 (386)
T ss_dssp             -EEECGGGGTCCSCGGGCCTTTTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSSEEEEEECCCTTTTCCGGGTT-T
T ss_pred             -CCCCEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCEEECCCCEEEEEECCHHCCCCCCCCC-C
T ss_conf             -25531546677674447643457325579988988999878999657777454047856888703142076634579-7


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECC
Q ss_conf             5300024786459986233366645521356677887989999688
Q gi|254780741|r  278 SATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDV  323 (367)
Q Consensus       278 ~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~  323 (367)
                      -++.   -....+.|.|..|+  |.+.-+...++.++||.+.+..-
T Consensus       301 ~~vl---i~g~~~pivG~vsM--D~~~vDvtd~~~~~GD~V~l~G~  341 (386)
T 1vfs_A          301 GPVL---VAGKIRRAAGRIAM--DQFVVDLGEDLAEAGDEAVILGD  341 (386)
T ss_dssp             CEEE---ETTEEEEBCSCCCS--SCEEEEEETCCCCTTCEEEEECC
T ss_pred             EEEE---ECCEEEEEEEEECC--CEEEEECCCCCCCCCCEEEEEEC
T ss_conf             0699---99999289649623--43899878987898999999978


No 23 
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.43  E-value=2.6e-10  Score=86.10  Aligned_cols=290  Identities=14%  Similarity=0.082  Sum_probs=163.3

Q ss_pred             EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHCCEEEEECHHHHHHHHC-CCCCCCEEECCC
Q ss_conf             68977999999999999985336986999541059----9999999985187489807999989873-688010885377
Q gi|254780741|r    6 YYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYMDGTTSSSLYEVMLGHE-KFGGETHAYNVA   80 (367)
Q Consensus         6 ~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g~g~dv~S~~E~~la~~-g~~~~~i~~~~~   80 (367)
                      .-..|.+.|++|++.++..   ++.+++--+|||.    ...|.+.|.+..++|-|++..|....++ |.....+++.+.
T Consensus         5 ~~eIdl~al~~N~~~lr~~---~~~ki~aVVKanAYGhG~~~ia~~L~~g~~~faVa~~~Ea~~LR~~g~~~~il~l~~~   81 (357)
T 1rcq_A            5 RALIDLQALRHNYRLAREA---TGARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIRQPILLLEGF   81 (357)
T ss_dssp             EEEEEHHHHHHHHHHHHHH---HCSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCCSCEEETTCC
T ss_pred             EEEEEHHHHHHHHHHHHCC---CCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCCCCEECCCCC
T ss_conf             9998499999999999706---6994999996653538799999999956997999899999999970996420110013


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH------
Q ss_conf             78034788613886898567205999999861234561489963577443101245578643574278888743------
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE------  154 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~------  154 (367)
                      ..+++++.+.++...+++.|..+++.+.......+.+|-|-|            +||  .+|+|+..+++.+..      
T Consensus        82 ~~~~~~~~~~~~~i~~~i~s~~~~~~l~~~~~~~~~~vhLkv------------DTG--M~RlG~~~~e~~~~~~~~~~~  147 (357)
T 1rcq_A           82 FEASELELIVAHDFWCVVHCAWQLEAIERASLARPLNVWLKM------------DSG--MHRVGFFPEDFRAAHERLRAS  147 (357)
T ss_dssp             SSGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSCEEEEEEB------------CSS--SCSSSBCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHHC
T ss_conf             557788988863146565879999999974636643699997------------267--643356837888889998641


Q ss_pred             -HCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE--EE
Q ss_conf             -149606653056566-61478999999999898650887508753377666445568078999999875421650--45
Q gi|254780741|r  155 -IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ--IY  230 (367)
Q Consensus       155 -~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~--l~  230 (367)
                       ...+.|+..|..+-. .+.....+.++...+...........-|=+|=+..+...++.      ++-=..-|+..  -.
T Consensus       148 ~~~~~~gi~tH~a~ad~~~~~~~~~q~~~f~~~~~~~~~~~h~aNS~~~l~~~~~~~d~------vR~Gi~lYG~~p~~~  221 (357)
T 1rcq_A          148 GKVAKIVMMSHFSRADELDCPRTEEQLAAFSAASQGLEGEISLRNSPAVLGWPKVPSDW------VRPGILLYGATPFER  221 (357)
T ss_dssp             TCEEEEEEECCCSSTTCTTCTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCTTSCCSE------ECCCGGGGTCCSSSS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCE------ECCCCCCCCCCCCCC
T ss_conf             45440345653033556203679999999999875113321146839885484024862------466720145678743


Q ss_pred             EEHHHHCCCCCEEEEEEEEEEEC-C-C------CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             30022014574188878878630-4-4------33--------3433335656566400134553000247864599862
Q gi|254780741|r  231 LEPGEAIVTNTTTLNTTVLDISE-N-I------KN--------LVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCG  294 (367)
Q Consensus       231 iEPGR~lv~~ag~lv~~V~~~K~-~-~------~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G  294 (367)
                      ..+-..-.-++..+-++|+.+|+ . |      ..        ..++..|-.+-++-.+. ..-.+.   -....+.|.|
T Consensus       222 ~~~~~~~lkpv~~l~a~i~~ik~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~-~~~~v~---i~G~~~pivG  297 (357)
T 1rcq_A          222 AHPLADRLRPVMTLESKVISVRDLPAGEPVGYGARYSTERRQRIGVVAMGYADGYPRHAA-DGTLVF---IDGKPGRLVG  297 (357)
T ss_dssp             CCTTGGGCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCTTCC-TTCEEE---ETTEEEEBCS
T ss_pred             CCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCC-CCCEEE---ECCEEEEEEC
T ss_conf             445443465128998666898985899987654320025760799861200157541046-882999---9999937857


Q ss_pred             CCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             3336664552135-66778879899996887
Q gi|254780741|r  295 RSCLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       295 ~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      ..|+  |.+.-+. ..|+.++||.+.+..-.
T Consensus       298 risM--D~~~vdvt~~~~~~~Gd~v~l~G~~  326 (357)
T 1rcq_A          298 RVSM--DMLTVDLTDHPQAGLGSRVELWGPN  326 (357)
T ss_dssp             CCCS--SCEEEECTTCTTCCTTCEEEEESSS
T ss_pred             EECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             6340--4389988899778999999997899


No 24 
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A*
Probab=99.43  E-value=8.5e-10  Score=82.71  Aligned_cols=304  Identities=12%  Similarity=0.129  Sum_probs=175.2

Q ss_pred             CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEE
Q ss_conf             568-97799999999999998533698699954105----9999999998518-748980799998987-3688010885
Q gi|254780741|r    5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAY   77 (367)
Q Consensus         5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~   77 (367)
                      |.| =.|.+.|+.|++.+++... ++.+++--+|||    -...|.+.+.+.| ++|-|+++.|+...+ .|......++
T Consensus         7 ~tw~eIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~ILvl   85 (388)
T 1bd0_A            7 DTWAEVDLDAIYDNVENLRRLLP-DDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVL   85 (388)
T ss_dssp             SEEEEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTCCSCEEEC
T ss_pred             CEEEEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf             78999969999999999997489-98979999915026488899999999869899998679999999970899858996


Q ss_pred             CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH---
Q ss_conf             377780347886138868985672059999998612345--614899635774431012455786435742788887---
Q gi|254780741|r   78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE---  152 (367)
Q Consensus        78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~---  152 (367)
                      ++.. ++++..+.+....+++.+.+.+..+...++ .+.  +|-|-|            +||  .+|+|+...+..+   
T Consensus        86 ~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~vhLki------------DTG--M~RlG~~~~e~~~~~~  149 (388)
T 1bd0_A           86 GASR-PADAALAAQQRIALTVFRSDWLEEASALYS-GPFPIHFHLKM------------DTG--MGRLGVKDEEETKRIV  149 (388)
T ss_dssp             SCCC-GGGHHHHHHTTEEEEECCHHHHHHHHHHCC-CSSCEEEEEEB------------CSS--SCSSSBCSHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-CCCCEEEEEEE------------ECC--CCCCCCCCHHHHHHHH
T ss_conf             1788-689999873266642062999998888761-58863899998------------168--8867878278999999


Q ss_pred             -H----HHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---CCCCCCCCHHHHHHHHHHHH
Q ss_conf             -4----3149606653056566-6147899999999989865088750875337766---64455680789999998754
Q gi|254780741|r  153 -S----EIKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIH---FTDKDYPVKDFCQRLKEFSE  223 (367)
Q Consensus       153 -~----~~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~---~~~~~~~~~~~~~~i~~~~~  223 (367)
                       .    ....+.|+..|..+-. .+.+...+.+....+...+.+.....+-++..-.   .+...++             
T Consensus       150 ~~i~~~~~l~~~Gi~tH~a~ad~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~anS~~~l~~~~~~~d-------------  216 (388)
T 1bd0_A          150 ALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFN-------------  216 (388)
T ss_dssp             HHHHHSTTEEEEEEECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTT-------------
T ss_pred             HHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCC-------------
T ss_conf             9998589961678970246732235288999999999999975324540666256777539502376-------------


Q ss_pred             HCCCEEEEEHHHHC----------------CCCCEEEEEEEEEEEC-------C-CCCC--------CCCCCCCCCCCCC
Q ss_conf             21650453002201----------------4574188878878630-------4-4333--------4333356565664
Q gi|254780741|r  224 KYSVQIYLEPGEAI----------------VTNTTTLNTTVLDISE-------N-IKNL--------VIVDSSVEAHVPD  271 (367)
Q Consensus       224 ~~~~~l~iEPGR~l----------------v~~ag~lv~~V~~~K~-------~-~~~~--------v~vd~g~~~~~~~  271 (367)
                            ++=||..+                .-++..+.++|+.+|+       + +..|        +++..|..+-++-
T Consensus       217 ------~vR~Gi~lyG~~p~~~~~~~~~~~Lkpv~~l~a~ii~i~~~~~G~~VgYg~~~~a~~~~~ia~v~iGYaDG~~r  290 (388)
T 1bd0_A          217 ------MVRFGIAMYGLAPSPGIKPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLR  290 (388)
T ss_dssp             ------EEEECGGGGTCCSCGGGGGGCSSCCCCCEEEEEECSEEEEECTTCEESGGGCEECCSSEEEEEESCCGGGTCCG
T ss_pred             ------CEECCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
T ss_conf             ------04133688843777665544445750579999973367775799845557520157783599982140256320


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCC------HHHHHC---------CCCCC
Q ss_conf             001345530002478645998623336664552135667788798999968870------223243---------47689
Q gi|254780741|r  272 YLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAG------YNINRK---------NWFNG  336 (367)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GA------Y~~~~~---------~~Fn~  336 (367)
                      .+..  -.+..   ....+.|.|..|+  |.+.-+... ++++||.+.+....+      -.++..         +.. +
T Consensus       291 ~~~~--~~V~i---~g~~~pivGrvsM--D~~~vDv~~-~~~vGD~V~l~G~~~~~~i~~~~~a~~~~ti~yEil~~l-~  361 (388)
T 1bd0_A          291 RLQH--FHVLV---DGQKAPIVGRICM--DQCMIRLPG-PLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTI-S  361 (388)
T ss_dssp             GGGG--CEEEE---TTEEEEEESCCCS--SCEEEECSS-CCCTTCEEEEEEEETTEEECHHHHHHHHTSCTTHHHHHS-C
T ss_pred             CCCC--CEEEE---CCEEEEEEEEEEC--CEEEEECCC-CCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-C
T ss_conf             1479--88999---9998058628713--718998899-999999999986899876189999998689713475087-8


Q ss_pred             CCCCEEEEEECCCCEEEEE
Q ss_conf             9887799996799099997
Q gi|254780741|r  337 INMPTIAVKNVDGTIKAIR  355 (367)
Q Consensus       337 ~~~P~~v~~~~~g~~~~~r  355 (367)
                      ...|.+|+.  +|++.-++
T Consensus       362 ~Rv~R~Y~~--~~~~~~~~  378 (388)
T 1bd0_A          362 YRVPRIFFR--HKRIMEVR  378 (388)
T ss_dssp             TTSCEEEEE--TTEEEEEE
T ss_pred             CCCCEEEEE--CCEEEEEE
T ss_conf             878749948--99798874


No 25 
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.42  E-value=6.3e-10  Score=83.59  Aligned_cols=277  Identities=13%  Similarity=0.113  Sum_probs=164.0

Q ss_pred             CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEE
Q ss_conf             568-97799999999999998533698699954105----9999999998518-7489807999989873-688010885
Q gi|254780741|r    5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAY   77 (367)
Q Consensus         5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~   77 (367)
                      |.+ ..|.+.|++|++.+++.. .++.+++--+|||    -...|.+.+.+.| ++|-|+++.|+...++ |......++
T Consensus         8 ~~~l~Idl~al~~N~~~i~~~~-~~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~i~Ea~~LR~~g~~~~ilvl   86 (371)
T 3e5p_A            8 PTRLHIDTQAITENVQKECQRL-PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAGVQDPILIL   86 (371)
T ss_dssp             SCEEEECHHHHHHHHHHHHHSS-CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTTCCSCEEEE
T ss_pred             CEEEEEEHHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf             9899996999999999999747-998979999945346477899999999879699999099999999972999947864


Q ss_pred             CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHH-HHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCC-HHHHH--
Q ss_conf             37778034788613886898567205999999-8612345--614899635774431012455786435742-78888--
Q gi|254780741|r   78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKD-KAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEK-CKDKI--  151 (367)
Q Consensus        78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~-~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~-~~~~~--  151 (367)
                      ++. .++|+..+.+....+++.|..++.++.+ .++..+.  +|-|.|+            ||  .+|+|+. .+++.  
T Consensus        87 ~~~-~~~~~~~~~~~~l~~~i~s~~~~~~~l~~~a~~~~~~~~vhLkiD------------TG--M~RlG~~~~ee~~~~  151 (371)
T 3e5p_A           87 SVV-DLAYVPLLIQYDLSVTVATQEWLEAALQQLTPESNTPLRVHLKVD------------TG--MGRIGFLTPEETKQA  151 (371)
T ss_dssp             EEC-CGGGHHHHHHHTCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBC------------SS--SCSSSBCSSHHHHHH
T ss_pred             CCC-CCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEE------------CC--CCCCCCCCHHHHHHH
T ss_conf             156-820578997379669964099999999999874277647999993------------89--986798747899999


Q ss_pred             -H----HHHCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CCCCCCCHHHHHHHHHHHHH
Q ss_conf             -7----431496066530565666-1478999999999898650887508753377666-44556807899999987542
Q gi|254780741|r  152 -E----SEIKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHF-TDKDYPVKDFCQRLKEFSEK  224 (367)
Q Consensus       152 -~----~~~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~-~~~~~~~~~~~~~i~~~~~~  224 (367)
                       +    .....+.|+..|..|... +.+...+.++...+....+.....++-++..-.. .+++..              
T Consensus       152 ~~~~~~~~~l~~~gi~tH~~~a~~~~~~~~~~q~~~f~~~~~~~~~~~~~~h~~nS~~~l~~~~~~--------------  217 (371)
T 3e5p_A          152 VRFVQSHKEFLWEGIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVP--------------  217 (371)
T ss_dssp             HHHHHHSTTBCCCEEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSCCCSEEECBCHHHHHHCTTSS--------------
T ss_pred             HHHHHHCCCEEEECCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCC--------------
T ss_conf             999874126333020210013456663789999999999998631366336641766764585335--------------


Q ss_pred             CCCEEEEEHHHHC---------------CCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCC
Q ss_conf             1650453002201---------------4574188878878630-------44-3--------33433335656566400
Q gi|254780741|r  225 YSVQIYLEPGEAI---------------VTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYL  273 (367)
Q Consensus       225 ~~~~l~iEPGR~l---------------v~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~  273 (367)
                      ++   ++-||..+               .-++..+.++|+.+|.       ++ .        +.+++..|-.+-.+-.+
T Consensus       218 ~d---~vR~Gi~lYG~~p~~~~~~~~~~lkpv~~l~a~Ii~v~~~~~G~~vGYg~~~~a~~~~~iaiv~iGYaDG~~r~~  294 (371)
T 3e5p_A          218 GN---MIRYGVAMYGLNPSGNKLAPSYALKPALRLTSELIHVKRLAAGEGIGYGETYVTEAEEWIGTVPIGYADGWLRHL  294 (371)
T ss_dssp             CS---EEEECGGGGTCCTTTTSSCCSSCCCCCEEEEEECCCEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGG
T ss_pred             CC---CCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCEEECCCCCCC
T ss_conf             77---451597431889877655643254151464895338899348986676762025778579998136205601004


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEC
Q ss_conf             1345530002478645998623336664552135667788798999968
Q gi|254780741|r  274 LYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFED  322 (367)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~  322 (367)
                      ..  ..+..   ....+.|.|..|+  |.+.-+... +.++||.+.+..
T Consensus       295 ~~--~~v~i---~G~~~pivG~isM--D~~~vDvt~-~~~vGD~v~l~G  335 (371)
T 3e5p_A          295 QG--FTVLV---NGKRCEIVGRVCM--DQCMIRLAE-EVPVGPVVTLVG  335 (371)
T ss_dssp             TT--CEEES---SSCEEEEESCCCS--SCEEEEESS-CCCSCCEEEEEE
T ss_pred             CC--CEEEE---CCEEEEEEEEECC--CEEEEECCC-CCCCCCEEEEEE
T ss_conf             69--76999---9998468648534--437998889-999999999985


No 26 
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.41  E-value=1.6e-09  Score=80.82  Aligned_cols=291  Identities=15%  Similarity=0.088  Sum_probs=162.0

Q ss_pred             EEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECC
Q ss_conf             68977999999999999985336986999541059----999999998518-7489807999989873-68801088537
Q gi|254780741|r    6 YYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNV   79 (367)
Q Consensus         6 ~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~   79 (367)
                      .-..|.+.|++|++.+++...  +.+++--+|||.    ...|.+.+.+.| +++-|+++.|....++ +.....++..+
T Consensus        22 ~a~Idl~ai~~N~~~i~~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~~~il~l~~   99 (376)
T 3kw3_A           22 IATIDVRAIVANYRTLAQHVA--PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPENVMIALLN   99 (376)
T ss_dssp             EEEECHHHHHHHHHHHHHHHT--TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCSSCEEEETT
T ss_pred             EEEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHC
T ss_conf             999829999999999997579--982999997741416599999999986969999938899999997288542556306


Q ss_pred             CCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf             778034788613886898567205999999861234561489963577443101245578643574278888743-----
Q gi|254780741|r   80 AYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-----  154 (367)
Q Consensus        80 ~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-----  154 (367)
                      ....++.+.+.++....++.|+++++.+.+.++..+.++-+-+.          ++||  .+|+|+..+++.+..     
T Consensus       100 ~~~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~vhlk----------vDTG--M~RlG~~~~e~~~~i~~i~~  167 (376)
T 3kw3_A          100 GFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQ----------VDTN--MSRLGLDKKELQKLIKNPTI  167 (376)
T ss_dssp             CCCTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEE----------BCSS--CCSSSBCHHHHHHHHHCCTH
T ss_pred             CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE----------EECC--CCCCCCCHHHHHHHHHHHHH
T ss_conf             79778999987412344006599999999889863887149999----------8489--98478886899999887664


Q ss_pred             --HCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf             --1496066530565666-147899999999989865088-750875337766644556807899999987542165045
Q gi|254780741|r  155 --IKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFIT-QIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIY  230 (367)
Q Consensus       155 --~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~-~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~l~  230 (367)
                        ..++.|+..|..+-.. +.....+......+...+... .....|=+|=+..+...++.      ++-=..-|+..- 
T Consensus       168 ~~~l~i~Gi~THfa~ad~~~~~~~~~q~~~~~~~~~~~~~~~~h~~NSag~~~~~~~~~d~------vR~Gi~lYG~~p-  240 (376)
T 3kw3_A          168 FEKAEIKYILSHLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDL------VRPGIALYGVDP-  240 (376)
T ss_dssp             HHHSEEEEEECCCSSTTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTE------ECCSGGGGTCCT-
T ss_pred             CCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCC------EECCEEEECCCC-
T ss_conf             0474377898776135567828899999999999751775465554769986392321464------203402525776-


Q ss_pred             EEHHHHCCCCCEEEEEEEEEEECC--C------CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf             300220145741888788786304--4------33--------3433335656566400134553000247864599862
Q gi|254780741|r  231 LEPGEAIVTNTTTLNTTVLDISEN--I------KN--------LVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCG  294 (367)
Q Consensus       231 iEPGR~lv~~ag~lv~~V~~~K~~--~------~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G  294 (367)
                      ......-.-++..+-++|+.+|.-  +      ..        .+++..|-.+-++-.+. ..-.+.   -....+.|.|
T Consensus       241 ~~~~~~~l~pv~~l~s~i~~vk~v~~G~~VgYg~~~~a~~~~~ia~v~vGYaDG~~R~~~-~~~~V~---i~g~~~~ivG  316 (376)
T 3kw3_A          241 HGKHPTPLKAVVKVEAQVLQSRFIDAGIPVGYRESFMTRRPSTLATISIGYADGWPRILS-NKGTVY---FNGHKLPIVG  316 (376)
T ss_dssp             TCCSSCSCCCCEEEEEEEEEEEEC----------------CCEEEEESCCGGGTCCGGGT-TTCEEE---ETTEEEEBCS
T ss_pred             CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCC-CCCEEE---ECCEEEEEEE
T ss_conf             434222356550699998654454489866668723337874998504534677552347-885799---9999827962


Q ss_pred             CCCCCCCEEEECCC--CCCCCCCCEEEEECC
Q ss_conf             33366645521356--677887989999688
Q gi|254780741|r  295 RSCLAGDIFGEFHF--EKPVKIGDRISFEDV  323 (367)
Q Consensus       295 ~~C~~~D~l~~~~~--~~~l~~GD~l~i~~~  323 (367)
                      ..|+  |.+.-+..  +.+.++||.+.+..-
T Consensus       317 risM--D~~~vDvt~~~~~~~vGD~V~l~G~  345 (376)
T 3kw3_A          317 HISM--DSIIVDATDLDKKPQRGDWVELIGP  345 (376)
T ss_dssp             CCCS--SCEEEECTTCSSCCCTTCEEEEEBT
T ss_pred             EECC--CEEEEECCCCCCCCCCCCEEEEEEC
T ss_conf             8635--3489987788777999999999819


No 27 
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1}
Probab=99.39  E-value=1.4e-09  Score=81.33  Aligned_cols=289  Identities=13%  Similarity=0.077  Sum_probs=160.8

Q ss_pred             CCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEE
Q ss_conf             8568-97799999999999998533698699954105----9999999998518-748980799998987-368801088
Q gi|254780741|r    4 TPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHA   76 (367)
Q Consensus         4 TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~   76 (367)
                      -|.+ -.|.+.|+.|++.+++...  +.+++-.+|||    -...|.+.+.+.| ++|-|+++.|....+ .|.....++
T Consensus         8 r~t~leIdl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~Ilv   85 (380)
T 3co8_A            8 RSTRIEFSKSSLAYNVQYTKQVSG--AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAGIDDFILI   85 (380)
T ss_dssp             SSCEEEECHHHHHHHHHHHHHHHC--CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTTCCCCEEE
T ss_pred             CCEEEEEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEE
T ss_conf             987999839999999999985579--984999997434647899999999986979999919999999997399983899


Q ss_pred             ECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HH---HH
Q ss_conf             537778034788613886898567205999999861234561489963577443101245578643574278-88---87
Q gi|254780741|r   77 YNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DK---IE  152 (367)
Q Consensus        77 ~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~---~~  152 (367)
                      ++|. .++|+..+.+.....++.|.++++.+.+.+++.+.+|-|-|            +||  .+|+|+..+ ++   .+
T Consensus        86 l~~~-~~~~~~~~~~~~l~~~i~s~~~l~~l~~~~~~~~~~VhLki------------DTG--M~RlG~~~~~~~~~~~~  150 (380)
T 3co8_A           86 LGPI-DVKYAPIASKYHFLTTVSSLDWLKSADKILGKEKLSVNLAV------------DTG--MNRIGVRSKKDLKDEIE  150 (380)
T ss_dssp             CSCC-CGGGHHHHHHTTCEEEECCHHHHHHHHHHCTTCCEEEEEEB------------CSS--SCSSSBCSHHHHHHHHH
T ss_pred             EECC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE------------ECC--CCCCCCCCHHHHHHHHH
T ss_conf             7254-21233688872531000249999999997346884389998------------268--98677773467899999


Q ss_pred             HH-----HCCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             43-----1496066530565666-1478999999999898650887-508753377666445568078999999875421
Q gi|254780741|r  153 SE-----IKNVNGLMFHNNCENK-SFLCFSAMLKNIEKEFGHFITQ-IEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKY  225 (367)
Q Consensus       153 ~~-----~~~i~Gih~H~gs~~~-~~~~~~~~l~~~~~~~~~~~~~-l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~  225 (367)
                      ..     ...+.|+-.|..+-.. +.......++...+..+.+... +..+--.++.-.....++  ...+.+     +-
T Consensus       151 ~l~~~~~~l~~~Gi~SHfa~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~d~v-----R~  223 (380)
T 3co8_A          151 FLQEHSDHFSYDGIFTHFASSDNPDDHYFQRQKNRWYELIDGLIMPRYVHVMNSGAAMYHSKELP--GCNSIA-----RV  223 (380)
T ss_dssp             HHHHCTTTEEEEEEECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGGGCT--TSCSEE-----EE
T ss_pred             HHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCHHCC--CCCCCC-----CC
T ss_conf             97641135440026620236677764788999999999997435753145533165635811156--432234-----67


Q ss_pred             CCEEE-EEHHH------HCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65045-30022------014574188878878630-------44-3--------33433335656566400134553000
Q gi|254780741|r  226 SVQIY-LEPGE------AIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYLLYQESATIY  282 (367)
Q Consensus       226 ~~~l~-iEPGR------~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~~~~~~~~~~  282 (367)
                      ++-++ ..|..      .-.-++..+.++|+.+|+       ++ .        +.+++..|..+-++..+..  -.+..
T Consensus       224 Gi~lYG~~p~~~~~~~~~~lkpv~~l~a~i~~ik~v~~G~~VgYg~~~~~~~~~~iavv~iGYaDG~~r~~~~--~~v~i  301 (380)
T 3co8_A          224 GTVVYGVEPSEGVLGPIDKLKPVFELKSALTFVKKIPAGEGISYGSKFVTSRDTWIGTLPIGYGDGWLAEYQD--FQLLI  301 (380)
T ss_dssp             STTTTTCCTTTTSSSCGGGSCCCEEEEEECSEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CEEEE
T ss_pred             CCEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCC--CEEEE
T ss_conf             7222456787444451003773189975211314648998666666310378728999801613551520479--87999


Q ss_pred             CCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf             247864599862333666455213566778879899996887
Q gi|254780741|r  283 PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA  324 (367)
Q Consensus       283 ~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G  324 (367)
                         ....+.|+|..|+  |.+.-+.. .+.++||.+++..-.
T Consensus       302 ---~G~~~pivGrisM--D~~~vdv~-~~~~vGD~V~l~G~~  337 (380)
T 3co8_A          302 ---DGQKCRQVGQIAM--DQMMVALP-HEYPIGTEVTLIGKS  337 (380)
T ss_dssp             ---TTEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEE
T ss_pred             ---CCEEEEECCEECC--CEEEEECC-CCCCCCCEEEEEECC
T ss_conf             ---9999027157334--60699899-999999999998489


No 28 
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.38  E-value=1.5e-09  Score=81.14  Aligned_cols=292  Identities=12%  Similarity=0.087  Sum_probs=165.4

Q ss_pred             CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHCCEEEEECHHHHHHHH-CCCCCCCEEEC
Q ss_conf             8568977999999999999985336986999541059----999999998518748980799998987-36880108853
Q gi|254780741|r    4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYMDGTTSSSLYEVMLGH-EKFGGETHAYN   78 (367)
Q Consensus         4 TP~yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g~g~dv~S~~E~~la~-~g~~~~~i~~~   78 (367)
                      +...+.|.+.|+.|++.+++..  ++.+++--+|||.    ...+.+.+.+ .+.|-|+++.|....+ +|.....++++
T Consensus        23 ~a~~~Idl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~-~~~faVa~~~EA~~LR~~gi~~~ilil~   99 (379)
T 2rjg_A           23 AATVVINRRALRHNLQRLRELA--PASKMVAVVKANAYGHGLLETARTLPD-ADAFGVARLEEALRLRAGGITKPVLLLE   99 (379)
T ss_dssp             CSEEEEEHHHHHHHHHHHHHHS--TTSEEEEECHHHHHTTCHHHHHHHCTT-CSEEEESSHHHHHHHHHTTCCSCEEETT
T ss_pred             CEEEEECHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHC-CCEEEEEEHHHHHHHHHHCCCCCEECCC
T ss_conf             6599995999999999999668--998699999645263878999999960-9989993999999999748998621034


Q ss_pred             CCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----
Q ss_conf             7778034788613886898567205999999861234561489963577443101245578643574278888743----
Q gi|254780741|r   79 VAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE----  154 (367)
Q Consensus        79 ~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~----  154 (367)
                      +...++++..+.++....++.|.++++.+.+.....+.+|-|-|            +||  .+|+|+..+++.+..    
T Consensus       100 ~~~~~~~~~~~~~~~i~~~i~s~~~l~~~~~~~~~~~~~vhlki------------DTG--M~RlG~~~~e~~~~~~~~~  165 (379)
T 2rjg_A          100 GFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKL------------DTG--MHRLGVRPEQAEAFYHRLT  165 (379)
T ss_dssp             CCSCGGGHHHHHHTTEEEEECSHHHHHHHHHCCCSSCBCEEEEB------------CSS--CCSSSBCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHH
T ss_conf             68998999999970666356979999999987348981799998------------178--8888978056788899998


Q ss_pred             ----HCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCE-
Q ss_conf             ----149606653056566-61478999999999898650887508753377666445568078999999875421650-
Q gi|254780741|r  155 ----IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQ-  228 (367)
Q Consensus       155 ----~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~~~~~~~~~~~~i~~~~~~~~~~-  228 (367)
                          ...+.|+-.|..+.. .+.....+.++...+..+.........|=+|=+..+...++.      ++-=..-|+.. 
T Consensus       166 ~~~~~l~~~Gi~THfa~ad~~d~~~~~~Q~~~F~~~~~~~~~~~h~anS~a~l~~~~~~~d~------vR~Gi~lYG~~p  239 (379)
T 2rjg_A          166 QCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDW------VRPGIILYGVSP  239 (379)
T ss_dssp             TCSSBCSSCEEECCCSSTTCTTSTHHHHHHHHHHHHHTTCCSCEECCCHHHHHHCGGGCSSE------ECCCGGGGTCCS
T ss_pred             HHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCCCCC------CCCCCCEECCCC
T ss_conf             74044410358825577654451999999999999975223201001787775787234765------467861563665


Q ss_pred             --EEEEHHHHCCCCCEEEEEEEEEEEC-------C-CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             --4530022014574188878878630-------4-43--------3343333565656640013455300024786459
Q gi|254780741|r  229 --IYLEPGEAIVTNTTTLNTTVLDISE-------N-IK--------NLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTA  290 (367)
Q Consensus       229 --l~iEPGR~lv~~ag~lv~~V~~~K~-------~-~~--------~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (367)
                        -.-.+...=.-++..+-++|..+|.       + +.        +.+++..|..+-++-.+.. ...+..   ....+
T Consensus       240 ~~~~~~~~~~~Lkpv~sl~a~i~~v~~l~~G~~VgYg~~~~a~~~~~ia~ipiGYaDG~~R~~~~-~~~V~i---~G~~~  315 (379)
T 2rjg_A          240 LEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGDGYPRAAPS-GTPVLV---NGREV  315 (379)
T ss_dssp             SSSSCCGGGGTCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSCEEEEEESCCTTTTCCTTCCT-TCEEEE---TTEEE
T ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCCCEEECCCCEEEEEECCEECCCCCCCCCC-CCEEEE---CCEEE
T ss_conf             43445433457631278689823679967998556776155269839999744411672555679-958999---99991


Q ss_pred             EEECCCCCCCCEEEECC-CCCCCCCCCEEEEECCC
Q ss_conf             98623336664552135-66778879899996887
Q gi|254780741|r  291 MVCGRSCLAGDIFGEFH-FEKPVKIGDRISFEDVA  324 (367)
Q Consensus       291 ~v~G~~C~~~D~l~~~~-~~~~l~~GD~l~i~~~G  324 (367)
                      .|.|..|+  |.+.-+. ..++.++||.+.+..-+
T Consensus       316 pivGrv~M--D~~~vDlt~~~~~~~GD~V~L~G~~  348 (379)
T 2rjg_A          316 PIVGRVAM--DMICVDLGPQAQDKAGDPVILWGEG  348 (379)
T ss_dssp             EBCSCCCS--SCEEEECCTTCCCCTTCEEEEEBTT
T ss_pred             EEEEEECC--CEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             57779725--4289988898889999999997899


No 29 
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.37  E-value=1.6e-08  Score=74.32  Aligned_cols=316  Identities=12%  Similarity=0.115  Sum_probs=171.6

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCC
Q ss_conf             8977999999999999985336986999541059----999999998518-748980799998987-3688010885377
Q gi|254780741|r    7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVA   80 (367)
Q Consensus         7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~   80 (367)
                      -=.|.+.|++|++.+++... ++++++--+|||.    ...|.+.+.+.| ++|-|+++.|....+ .|......+++| 
T Consensus        14 ~EIdl~al~~N~~~i~~~~~-~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~gi~~~Ilvl~~-   91 (391)
T 2vd8_A           14 VEVDLDAIYNNVTHIXEFIP-SDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAGITAPILVLGP-   91 (391)
T ss_dssp             EEEEHHHHHHHHHHHHHHSC-TTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSCEEECSC-
T ss_pred             EEEEHHHHHHHHHHHHHHCC-CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEEEC-
T ss_conf             99859999999999997479-9987999991502647889999999986989999916999999997199997799748-


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHH-HHHHH------
Q ss_conf             78034788613886898567205999999861234561489963577443101245578643574278-88874------
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCK-DKIES------  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~-~~~~~------  153 (367)
                      ..++++..+.++....++.|.+++..+.+.++ .+.++-+-|+          ++||  .+|+|+... ++.+.      
T Consensus        92 ~~~~~~~~~~~~~~~~~i~s~~~l~~~~~~~~-~~~~~~vhlk----------iDTG--M~RlG~~~~~e~~~~~~~i~~  158 (391)
T 2vd8_A           92 SPPRDINVAAENDVALTVFQXEWVDEAIXLWD-GSSTMXYHIN----------FDSG--MGRIGIRERXELXGFLXSLEG  158 (391)
T ss_dssp             CCGGGHHHHHHTTEEEECCCHHHHHHHHHHCC-SSCCEEEEEE----------BCSS--CCSSSBCCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCEEECHHHHHHHHHHHHH-CCCCEEEEEE----------ECCC--CCCCCCCCHHHHHHHHHHHHH
T ss_conf             88256556542053203405999999999860-4686489999----------6379--886788741468999999972


Q ss_pred             -HHCCCEEEEECCCCC-CCCHHHHHHHHHHHHHH---HHHCCCCCEEEEECC---CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             -314960665305656-66147899999999989---865088750875337---7666445568078999999875421
Q gi|254780741|r  154 -EIKNVNGLMFHNNCE-NKSFLCFSAMLKNIEKE---FGHFITQIEWISLGG---GIHFTDKDYPVKDFCQRLKEFSEKY  225 (367)
Q Consensus       154 -~~~~i~Gih~H~gs~-~~~~~~~~~~l~~~~~~---~~~~~~~l~~idiGG---G~~~~~~~~~~~~~~~~i~~~~~~~  225 (367)
                       ...++.|+-.|..+- ..+.+...+.++...+.   +.+.+.+...+.+..   -+..+...++.      ++-=..-|
T Consensus       159 ~~~l~i~Gi~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~------VR~Gi~lY  232 (391)
T 2vd8_A          159 APFLELEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNA------VRIGIAMY  232 (391)
T ss_dssp             CTTEEEEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTE------EEESTTTT
T ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCC------EECCCCEE
T ss_conf             899650367612276776540567899999999999998628983205522767664675235773------40682014


Q ss_pred             CCEEEE--EHHHH-CCCCCEEEEEEEEEEEC-------C-CCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             650453--00220-14574188878878630-------4-433--------34333356565664001345530002478
Q gi|254780741|r  226 SVQIYL--EPGEA-IVTNTTTLNTTVLDISE-------N-IKN--------LVIVDSSVEAHVPDYLLYQESATIYPNTG  286 (367)
Q Consensus       226 ~~~l~i--EPGR~-lv~~ag~lv~~V~~~K~-------~-~~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~~  286 (367)
                      +..-..  .+..- =.-+++.+.++|+.+|+       + +..        .+++..|-.+-++-.+..  ..+..   .
T Consensus       233 G~~p~~~~~~~~~~~Lkpv~~l~s~v~~i~~~~~G~~VgYg~~~~a~~~~~iavv~iGYaDG~~r~~~~--~~v~i---~  307 (391)
T 2vd8_A          233 GLSPSVEIRPFLPFXLEPALSLHTXVAHIKQVIXGDGISYNVTYRTXTEEWIATVAIGYADGWLRRLQG--FEVLV---N  307 (391)
T ss_dssp             TCCSCTTTGGGCSSCCCCCEEEEEEEEEEEEECTTCEESGGGCEECSSSEEEEEESCCGGGTCCGGGTT--CEEEE---T
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCCCCEEECCCCEEEEEECEEECCCCCCCCCC--CEEEE---C
T ss_conf             777763324455534322166541001069846999778676275136648988441806862304679--88999---9


Q ss_pred             CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC------CH---------HHHHCCCCCCCCCCEEEEEECCCCE
Q ss_conf             64599862333666455213566778879899996887------02---------2324347689988779999679909
Q gi|254780741|r  287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA------GY---------NINRKNWFNGINMPTIAVKNVDGTI  351 (367)
Q Consensus       287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G------AY---------~~~~~~~Fn~~~~P~~v~~~~~g~~  351 (367)
                      ...+-|+|..|+  |.+.-+.. .+.++||.+++....      +-         .+.+-+.. +...|.+|+.  +|.+
T Consensus       308 G~~~pivGri~M--D~~~VDv~-~~v~~GD~v~l~G~~~~~~i~~~~~a~~~gti~yEil~~l-~~Rv~R~yv~--~g~~  381 (391)
T 2vd8_A          308 GXRVPIVGRVTM--DQFMIHLP-CEVPLGTXVTLIGRQGDEYISATEVAEYSGTINYEIITTI-SFRVPRIFIR--NGXV  381 (391)
T ss_dssp             TEEEEEESCCCS--SCEEEEES-SCCCTTCEEEEEEEETTEEECHHHHHHHTTSCHHHHHHTS-CTTSCEEEEE--TTEE
T ss_pred             CEECCEEEEECC--CEEEEECC-CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHCC-CCCCCEEEEE--CCEE
T ss_conf             988747457546--43799899-9999999899977999878899999998789613686087-8888759997--9979


Q ss_pred             EEE
Q ss_conf             999
Q gi|254780741|r  352 KAI  354 (367)
Q Consensus       352 ~~~  354 (367)
                      .-+
T Consensus       382 ~~~  384 (391)
T 2vd8_A          382 VEV  384 (391)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999


No 30 
>3oo2_A Alanine racemase 1; infectious diseases, center for structural of infectious diseases (csgid); 2.37A {Staphylococcus aureus subsp}
Probab=99.36  E-value=3.8e-09  Score=78.42  Aligned_cols=290  Identities=15%  Similarity=0.108  Sum_probs=158.8

Q ss_pred             CEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEE
Q ss_conf             568-97799999999999998533698699954105----9999999998518-7489807999989873-688010885
Q gi|254780741|r    5 PYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAY   77 (367)
Q Consensus         5 P~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~   77 (367)
                      |.| -.|.+.|++|++.+++..  ++.+++--+|||    -...|.+.+.+.| ++|-|+++.|....++ |.....+++
T Consensus        11 ~t~leIdl~al~~N~~~ir~~~--~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~gi~~~Ilvl   88 (385)
T 3oo2_A           11 SAYMNVDLNAVASNFKVFSTLH--PNKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILVL   88 (385)
T ss_dssp             SEEEEEEHHHHHHHHHHHHHHS--TTSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTTTCCSEEEEC
T ss_pred             CEEEEECHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEE
T ss_conf             8899994999999999999558--99859999966036488999999999869799999089999999966999855761


Q ss_pred             CCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHH-HCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH----HHH
Q ss_conf             3777803478861388689856720599999986-12345614899635774431012455786435742788----887
Q gi|254780741|r   78 NVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKA-QKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKD----KIE  152 (367)
Q Consensus        78 ~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a-~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~----~~~  152 (367)
                      ++. .+.|+..+.++....++-|.+++..+.+.+ +..+.++-+-++          ++||  .+|+|+...+    +.+
T Consensus        89 ~~~-~~~e~~~~~~~~l~~~i~~~~~l~~~~~~~~~~~~~~~~vhLk----------iDTG--M~RlG~~~~e~~~~~~~  155 (385)
T 3oo2_A           89 GVL-PAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIK----------LDTG--MGRLGIKDTKTYQEVIE  155 (385)
T ss_dssp             SCC-CGGGHHHHHHTTEEEEECCHHHHHHHHHTCCSSCCSCEEEEEE----------BCCS--SCCSSBCSHHHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHCEEEHHHHHHHHHHHHHHHCCCCEEEEEE----------ECCC--CCCCCCCCHHHHHHHHH
T ss_conf             566-6266999997310014414666678999987634896379999----------7578--87678883678999999


Q ss_pred             H----HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             4----314960665305656661478999999999898650887508753---377666445568078999999875421
Q gi|254780741|r  153 S----EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISL---GGGIHFTDKDYPVKDFCQRLKEFSEKY  225 (367)
Q Consensus       153 ~----~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idi---GGG~~~~~~~~~~~~~~~~i~~~~~~~  225 (367)
                      .    ....+.|+..|..+-........+.+....+.... .....++.+   +|.+..+...++.-      +-=..-|
T Consensus       156 ~~~~~~~l~i~Gi~SH~a~ad~~~~~~~~q~~~f~~~~~~-~~~~~~~h~anS~~~~~~~~~~~d~v------R~Gi~ly  228 (385)
T 3oo2_A          156 IIQQYEQLVFEGVFTHFACADEPGDMTTEQYQRFKDMVNE-AIKPEYIHCQNSAGSLLMDCQFCNAI------RPGISLY  228 (385)
T ss_dssp             HHTTCTTEEEEEEECCCSSTTSSSSHHHHHHHHHHHHHHT-SCCCSEEEEECHHHHHHCCCTTCCEE------CCCGGGG
T ss_pred             HHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCEECCCCHHHHCCCHHHCCEE------CCCEEEE
T ss_conf             9753574578889860133443320448999999887652-26865200124375655827655602------3427998


Q ss_pred             CCEEE---EEHHHHCCCCCEEEEEEEEEEEC--CC------C--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             65045---30022014574188878878630--44------3--------334333356565664001345530002478
Q gi|254780741|r  226 SVQIY---LEPGEAIVTNTTTLNTTVLDISE--NI------K--------NLVIVDSSVEAHVPDYLLYQESATIYPNTG  286 (367)
Q Consensus       226 ~~~l~---iEPGR~lv~~ag~lv~~V~~~K~--~~------~--------~~v~vd~g~~~~~~~~~~~~~~~~~~~~~~  286 (367)
                      +..-.   ..+-+.-+-++..+.++|+.+|+  .|      .        +.+++..|-.+-++-.+..  -.+..   .
T Consensus       229 G~~p~~~~~~~~~~~lkpv~~l~a~ii~i~~l~~G~~vgYg~~~~a~~~~~ia~v~iGYaDG~~r~~~~--~~v~i---~  303 (385)
T 3oo2_A          229 GYYPSEYVQQKVKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQG--SFVNV---N  303 (385)
T ss_dssp             TCCSSHHHHHHCCCCCCCCEEEEEECCEEEEECTTCBCCCC--CBCSSCEEEEEESCCGGGTCCGGGTT--CEEEE---T
T ss_pred             CCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEECCCCCCEEEEEEEEECCCCCCCCC--CEEEE---C
T ss_conf             656753213322235565078777778899834998656686045067742899962300560523689--88999---9


Q ss_pred             CEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf             64599862333666455213566778879899996887
Q gi|254780741|r  287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA  324 (367)
Q Consensus       287 ~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G  324 (367)
                      ...+.|.|..|+  |.+.-+... ++++||.+.+..-.
T Consensus       304 G~~~pivGri~M--D~~~vDv~~-~~~~GD~V~l~G~~  338 (385)
T 3oo2_A          304 GHQCEVIGRVCM--DQTIVKVPD-QVKAGDSVILIDNH  338 (385)
T ss_dssp             TEEEEEESCCCS--SCEEEEECT-TCCTTCEEEEECSC
T ss_pred             CEEEEEEEEECC--CCEEEECCC-CCCCCCEEEEEECC
T ss_conf             999258708656--716998899-99999999997289


No 31 
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.32  E-value=8.5e-09  Score=76.11  Aligned_cols=289  Identities=12%  Similarity=0.077  Sum_probs=157.4

Q ss_pred             EEEEHHHHHHHHHHHHHHHHHCCCEEEEEEECC----CCHHHHHHHHHHC-CEEEEECHHHHHHHH-CCCCCCCEEECCC
Q ss_conf             897799999999999998533698699954105----9999999998518-748980799998987-3688010885377
Q gi|254780741|r    7 YLIDKQKLLNNLDTALYIRKNAGVKLLLALKCF----AAWGMFDTLNQYM-DGTTSSSLYEVMLGH-EKFGGETHAYNVA   80 (367)
Q Consensus         7 yv~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN----~~~~il~~l~~~g-~g~dv~S~~E~~la~-~g~~~~~i~~~~~   80 (367)
                      -+.|.+.|++|++.++....  +.+++--+|||    -...|.+.+.+.| .+|-|+++.|+...+ .|.....+++.+.
T Consensus        14 a~Idl~al~~N~~~ir~~~~--~~~i~aVVKanAYGhG~~~ia~~l~~~Gi~~faVa~i~EA~~LR~~g~~~~Il~l~~~   91 (384)
T 1xfc_A           14 AMVDLGAIEHNVRVLREHAG--HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGITAPVLAWLHP   91 (384)
T ss_dssp             EEEEHHHHHHHHHHHHHHHT--TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTCCSCEEECCCC
T ss_pred             EEECHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCCEEEECCC
T ss_conf             99939999999999997689--9839999925245378999999999779798999389999999982898866997079


Q ss_pred             CCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-----
Q ss_conf             7803478861388689856720599999986123456--148996357744310124557864357427888874-----
Q gi|254780741|r   81 YKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-----  153 (367)
Q Consensus        81 ~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~--I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-----  153 (367)
                       ..+++..+.+.....++.|.++++.+.+.++..+..  |-|-|+            ||  .+|+|+..+++.+.     
T Consensus        92 -~~~~~~~~~~~~~~~~i~s~~~l~~l~~~~~~~~~~~~vhLkvD------------TG--M~RlG~~~~~~~~~~~~~~  156 (384)
T 1xfc_A           92 -PGIDFGPALLADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVD------------TG--LNRNGVGPAQFPAMLTALR  156 (384)
T ss_dssp             -TTCCCHHHHHTTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBC------------SS--CCSSSBCTTTHHHHHHHHH
T ss_pred             -CHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEE------------CC--CCCCCCCCHHHHHHHHHHH
T ss_conf             -87889999755854663669999999999997399835999980------------79--8878878056799999998


Q ss_pred             -----HHCCCEEEEECCCCCCC-CHHHHHHHHH---HHHHHHHHCCCCCEEEEECC--C-CCCCCCCCCCHHHHHHHHHH
Q ss_conf             -----31496066530565666-1478999999---99989865088750875337--7-66644556807899999987
Q gi|254780741|r  154 -----EIKNVNGLMFHNNCENK-SFLCFSAMLK---NIEKEFGHFITQIEWISLGG--G-IHFTDKDYPVKDFCQRLKEF  221 (367)
Q Consensus       154 -----~~~~i~Gih~H~gs~~~-~~~~~~~~l~---~~~~~~~~~~~~l~~idiGG--G-~~~~~~~~~~~~~~~~i~~~  221 (367)
                           ...++.|+-.|..+... +.+.....++   .+.+.+.+.+....++.+..  | +..+...++.      ++-=
T Consensus       157 ~~~~~~~l~~~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~~~~nS~~~~~~~~~~~d~------vR~G  230 (384)
T 1xfc_A          157 QAMAEDAVRLRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDL------VRPG  230 (384)
T ss_dssp             HHHHTTSEEEEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGGGCCSE------ECCS
T ss_pred             HHHHCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCC------EECC
T ss_conf             6653472667457876772378874267999999999998777508982044554136665094220365------3158


Q ss_pred             HHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-------CC-CC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             54216504530022014574188878878630-------44-33--------3433335656566400134553000247
Q gi|254780741|r  222 SEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE-------NI-KN--------LVIVDSSVEAHVPDYLLYQESATIYPNT  285 (367)
Q Consensus       222 ~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-------~~-~~--------~v~vd~g~~~~~~~~~~~~~~~~~~~~~  285 (367)
                      ..-|+..-.-+.-..=.-++..+.++|+.+|+       ++ ..        .+++..|-.+-++-.+.. .-. +.  -
T Consensus       231 i~lYG~~p~~~~~~~~l~pv~~l~a~i~~v~~~~~G~~vgYg~~~~~~~~~~ia~v~iGYaDG~~r~~~~-~~~-v~--i  306 (384)
T 1xfc_A          231 IAVYGLSPVPALGDMGLVPAMTVKCAVALVKSIRAGEGVSYGHTWIAPRDTNLALLPIGYADGVFRSLGG-RLE-VL--I  306 (384)
T ss_dssp             GGGGTCCSSGGGCCTTCCCCEEEEEECCEEEEECTTCEESGGGCEECSSCEEEEEECCCGGGTCCGGGTT-TCE-EE--E
T ss_pred             CCEECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHCCC-CCE-EE--E
T ss_conf             2013566776310004676403543578888868999656676231567865999950110565521079-867-99--8


Q ss_pred             CCEEEEEECCCCCCCCEEEECC-CCC-CCCCCCEEEEECCC
Q ss_conf             8645998623336664552135-667-78879899996887
Q gi|254780741|r  286 GPYTAMVCGRSCLAGDIFGEFH-FEK-PVKIGDRISFEDVA  324 (367)
Q Consensus       286 ~~~~~~v~G~~C~~~D~l~~~~-~~~-~l~~GD~l~i~~~G  324 (367)
                      ....+-|.|..|+  |.+.-+. ..| +.++||.+.+..-.
T Consensus       307 ~G~~~piiG~isM--D~~~vDvt~~~~~v~vGD~V~l~G~~  345 (384)
T 1xfc_A          307 NGRRCPGVGRICM--DQFMVDLGPGPLDVAEGDEAILFGPG  345 (384)
T ss_dssp             TTEEEEEESCCCS--SCEEEEEESSSCCCCTTCEEEEECSS
T ss_pred             CCEEEEEECEECC--CCEEEEECCCCCCCCCCCEEEEECCC
T ss_conf             9999788257556--61799925887779999999997189


No 32 
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.31  E-value=3e-09  Score=79.08  Aligned_cols=291  Identities=13%  Similarity=0.115  Sum_probs=156.9

Q ss_pred             CCCCEE-EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC--CEEEEECHHHHHHHHC-CCCCC
Q ss_conf             888568-977999999999999985336986999541059----999999998518--7489807999989873-68801
Q gi|254780741|r    2 IKTPYY-LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM--DGTTSSSLYEVMLGHE-KFGGE   73 (367)
Q Consensus         2 i~TP~y-v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g--~g~dv~S~~E~~la~~-g~~~~   73 (367)
                      +.-|.| -.|.+.|+.|++.+++..  ++.+++-.+|||.    ...|.+.+.+.+  ++|-|++..|+...++ |....
T Consensus         6 ~~R~t~~eIdl~al~~N~~~ir~~~--~~~~i~aVVKanAYGhG~~~va~~l~e~~g~d~faVa~ieEa~~LR~~g~~~~   83 (395)
T 3hur_A            6 IHRPTWVSVDLDAAAHNLQEIREWT--KAKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQADLTLP   83 (395)
T ss_dssp             CSCCEEEEEEHHHHHHHHHHHHHHH--TCSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCCSC
T ss_pred             CCCCEEEEEEHHHHHHHHHHHHHHC--CCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCE
T ss_conf             8999899984999999999999668--99859999966226488899999999878999999929999999996699983


Q ss_pred             CEEECCCCCHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH-
Q ss_conf             0885377780347886138868985672059999998612345614899635774431012455786435742788887-
Q gi|254780741|r   74 THAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIE-  152 (367)
Q Consensus        74 ~i~~~~~~~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~-  152 (367)
                      .+++++ ..++|+..+.+...+.++.|+++++.+.+    ...++-+-+          .++||  .+|+|+...+..+ 
T Consensus        84 Ilvl~~-~~~~e~~~~~~~~l~~~i~s~~~l~~~~~----~~~~~~vhl----------kiDTG--M~RlG~~~~d~~~~  146 (395)
T 3hur_A           84 IWVLGA-WDYSDLKLFIDHDIVITIPSLAWLQNLPD----FEGTLKVSL----------AIDTG--MTRIGFDKADEISA  146 (395)
T ss_dssp             EEESSC-CCGGGHHHHHHTTEEEEECCHHHHHTCCC----CSSCEEEEE----------EBCCS--SCSSSBCCHHHHHH
T ss_pred             EEEECC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHH----HCCCCEEEE----------EECCC--CCCCCCCCHHHHHH
T ss_conf             999668-89799999998432343006888866675----168735999----------98178--88789880678999


Q ss_pred             -------HHHCCCEEEEECCCCCCC-CHHH---HHHHHHHHHHHHHHCCCCCEEEEECC---CCCC-CCCCCCCHHHHHH
Q ss_conf             -------431496066530565666-1478---99999999989865088750875337---7666-4455680789999
Q gi|254780741|r  153 -------SEIKNVNGLMFHNNCENK-SFLC---FSAMLKNIEKEFGHFITQIEWISLGG---GIHF-TDKDYPVKDFCQR  217 (367)
Q Consensus       153 -------~~~~~i~Gih~H~gs~~~-~~~~---~~~~l~~~~~~~~~~~~~l~~idiGG---G~~~-~~~~~~~~~~~~~  217 (367)
                             .....+.|+..|..+-.. +...   ..+.++.+.+.....+.+..++-+..   -+.. ..++..++.    
T Consensus       147 ~~~~~~~~~~l~l~Gi~SHla~ad~~~~~~~~~~~~q~~~f~~~~~~~~~~~~~~h~~nSa~~l~~~~~p~~~~d~----  222 (395)
T 3hur_A          147 AKKIIDKNPQLDLFSVYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAA----  222 (395)
T ss_dssp             HHHHHHHCTTEEEEEEECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSCCCGGGEECCCHHHHHHTTTCTTSCCSE----
T ss_pred             HHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCCCCE----
T ss_conf             9999985688627999761146663342116899999999999998459984266512404466325770104634----


Q ss_pred             HHHHHHHCCC-----EEEEEHHHHCCCCCEEEEEEEEEEECC--C------C--------CCCCCCCCCCCCCCCCCCCC
Q ss_conf             9987542165-----045300220145741888788786304--4------3--------33433335656566400134
Q gi|254780741|r  218 LKEFSEKYSV-----QIYLEPGEAIVTNTTTLNTTVLDISEN--I------K--------NLVIVDSSVEAHVPDYLLYQ  276 (367)
Q Consensus       218 i~~~~~~~~~-----~l~iEPGR~lv~~ag~lv~~V~~~K~~--~------~--------~~v~vd~g~~~~~~~~~~~~  276 (367)
                      ++-=..-|+.     +.-. |-..-..++..+.++|+.+|+-  +      .        +.+++..|..+-++..+.. 
T Consensus       223 vR~Gi~lYG~~p~~~~~~~-~~~~~l~pv~sl~a~Ii~vr~~~~G~~vGYg~~~~a~~~~~iavv~iGYaDG~~r~~~~-  300 (395)
T 3hur_A          223 IRPGQLISGVNVSNGELKM-PPNLHLERIFSVCSEIADVRFVKKDQSLSYGASERMPEDGYVATLPFGYNDGWLRRMQK-  300 (395)
T ss_dssp             ECCCGGGGTCCTTTTSSCC-CTTCCCCCCEEEEEECCEEEEECTTCBSSTTCSCBCSSSEEEEEESCCTTCGGGGGEEE-
T ss_pred             EEECCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHCCEEEEECCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCC-
T ss_conf             7511201366677543345-65434453133201001147715897262155412577725997226656883300479-


Q ss_pred             CCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCC
Q ss_conf             553000247864599862333666455213566778879899996887
Q gi|254780741|r  277 ESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVA  324 (367)
Q Consensus       277 ~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~G  324 (367)
                       -.+..   ....+.|.|..|+  |.+.-+.. .+.++||.+.+....
T Consensus       301 -~~vli---~G~~~pivG~isM--D~~~vdv~-~~~~vGD~V~l~G~~  341 (395)
T 3hur_A          301 -SSVII---NGKRMPIIGRITM--DQTMVKLD-RKYPIGTRVTLIGKD  341 (395)
T ss_dssp             -EEEEE---TTEEEEBCSCCCS--SCEEEECS-SCCCTTCEEEEEESS
T ss_pred             -CEEEE---CCEEEEEEEEECC--CEEEEECC-CCCCCCCEEEEEECC
T ss_conf             -87999---9999898618834--52899898-999999999999589


No 33 
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.06  E-value=4.9e-07  Score=64.51  Aligned_cols=271  Identities=13%  Similarity=0.091  Sum_probs=150.4

Q ss_pred             EEEHHHHHHHHHHHHHHHHHCCCEEEEEEECCC----CHHHHHHHHHHC-CEEEEECHHHHHHHHC-CCCCCCEEECCCC
Q ss_conf             977999999999999985336986999541059----999999998518-7489807999989873-6880108853777
Q gi|254780741|r    8 LIDKQKLLNNLDTALYIRKNAGVKLLLALKCFA----AWGMFDTLNQYM-DGTTSSSLYEVMLGHE-KFGGETHAYNVAY   81 (367)
Q Consensus         8 v~d~~~i~~n~~~~~~~~~~~~~~i~yA~KaN~----~~~il~~l~~~g-~g~dv~S~~E~~la~~-g~~~~~i~~~~~~   81 (367)
                      -.|.+.|++|++.++....  +.+++--+|||.    ...|.+.+.+.| +.|-|+++.|....++ |.....+++++..
T Consensus         7 ~IdL~al~~N~~~i~~~~~--~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~Ea~~LR~~g~~~~Ilil~~~~   84 (361)
T 2dy3_A            7 KIDLDAIAHNTRVLKQMAG--PAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGISQEVLCWIWTP   84 (361)
T ss_dssp             EECHHHHHHHHHHHHHHHT--TSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTCCSEEEECCCCT
T ss_pred             EEEHHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCCCEEEECCCC
T ss_conf             9859999999999985679--98499999455463789999999998694999983299999999738999768755887


Q ss_pred             CHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----
Q ss_conf             80347886138868985672059999998612345--61489963577443101245578643574278888743-----
Q gi|254780741|r   82 KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESE-----  154 (367)
Q Consensus        82 ~~~el~~a~~~~~~i~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~~-----  154 (367)
                       +++++.+.+....+.+-|..++..+..   ..+.  +|-|-|            +||  .+|+|+..+++.+..     
T Consensus        85 -~~~~~~~~~~~~~~~v~s~~~~~~~~~---~~~~~~~vhLkv------------DTG--M~RlG~~~~e~~~~~~~~~~  146 (361)
T 2dy3_A           85 -EQDFRAAIDRNIDLAVISPAHAKALIE---TDAEHIRVSIKI------------DSG--LHRSGVDEQEWEGVFSALAA  146 (361)
T ss_dssp             -TSCHHHHHTTTCEEEECSHHHHHHHHT---SCCSCEEEEEEB------------CCS--SCSSSBCHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHCCCEEECCHHHHHHHHH---HHCCCCEEEEEE------------CCC--CCCCCCCHHHHHHHHHHHHH
T ss_conf             -488999997277415502899899999---727886499998------------789--97679897999998999874


Q ss_pred             --HCCCEEEEECCCCCC-CCHHHHHHHHHHHHH---HHHHCCCCC-------------------EEEEECCCCCCCCCCC
Q ss_conf             --149606653056566-614789999999998---986508875-------------------0875337766644556
Q gi|254780741|r  155 --IKNVNGLMFHNNCEN-KSFLCFSAMLKNIEK---EFGHFITQI-------------------EWISLGGGIHFTDKDY  209 (367)
Q Consensus       155 --~~~i~Gih~H~gs~~-~~~~~~~~~l~~~~~---~~~~~~~~l-------------------~~idiGGG~~~~~~~~  209 (367)
                        ...+.|+..|..+-. .+.....+.++...+   .+.+.+...                   +++-.|-+++.-.+..
T Consensus       147 ~~~l~~~gi~tH~a~ad~~d~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~Gi~lYG~~~~~  226 (361)
T 2dy3_A          147 APHIEVTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVA  226 (361)
T ss_dssp             CTTEEEEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGGGCTTEECCCGGGGTCCSST
T ss_pred             CCCCCEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCHHCCCEEECCEEEECCCCCC
T ss_conf             35611320123540468765526899999999999998752786405565153666539410166230140476667775


Q ss_pred             CCHHHHHHHHHHHHHCCCEEEEEHHHHCCCCCEEEEEEEEEEEC-------CC-C--------CCCCCCCCCCCCCCCCC
Q ss_conf             80789999998754216504530022014574188878878630-------44-3--------33433335656566400
Q gi|254780741|r  210 PVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISE-------NI-K--------NLVIVDSSVEAHVPDYL  273 (367)
Q Consensus       210 ~~~~~~~~i~~~~~~~~~~l~iEPGR~lv~~ag~lv~~V~~~K~-------~~-~--------~~v~vd~g~~~~~~~~~  273 (367)
                                      +..       .-.-++..+-++|+.+|+       ++ .        ..+++..|-.+-++-.+
T Consensus       227 ----------------~~~-------~~l~pv~~l~a~i~~vr~~~~G~~vgYg~~~~~~~~~~ia~i~iGYaDG~~r~~  283 (361)
T 2dy3_A          227 ----------------GLE-------HGLKPAMTWEAKVSVVKQIEAGQGTSYGLTWRAEDRGFVAVVPAGYADGMPRHA  283 (361)
T ss_dssp             ----------------TCC-------CSCCCCEEEEEECCEEEECC---------------CCEEEEESCCTTTTCCGGG
T ss_pred             ----------------CCC-------CCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf             ----------------423-------467853133321136799348986664543114777159997020346654213


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECC-CC-CCCCCCCEEEEECCCCHH
Q ss_conf             1345530002478645998623336664552135-66-778879899996887022
Q gi|254780741|r  274 LYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFH-FE-KPVKIGDRISFEDVAGYN  327 (367)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~~~-~~-~~l~~GD~l~i~~~GAY~  327 (367)
                      .. ...+..   ....+-|.|..|+  |.+.-+. .. ..+++||.+.+..--+.+
T Consensus       284 ~~-~~~v~i---~g~~~pivGrvsM--D~~~vdvt~~~~~~~~Gd~V~l~G~~~~~  333 (361)
T 2dy3_A          284 QG-KFSVTI---DGLDYPQVGRVCM--DQFVISLGDNPHGVEAGAKAVIFGENGHD  333 (361)
T ss_dssp             TT-TCEEEE---TTEEEEEESCCCS--SCEEEEEETCTTCCCTTCEEEEESTTSCC
T ss_pred             CC-CCEEEE---CCEEEEEEEEECC--CEEEEECCCCCCCCCCCCEEEEECCCCCC
T ss_conf             79-837998---9999117648537--61799866884558999999997899999


No 34 
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=95.32  E-value=0.15  Score=28.41  Aligned_cols=159  Identities=14%  Similarity=0.120  Sum_probs=93.5

Q ss_pred             CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HH--H-C-CCCCCCEEE-CCCCCHHHHHHHHCCCCEE-EECC
Q ss_conf             6986999541059999999998518748980799998-98--7-3-688010885-3777803478861388689-8567
Q gi|254780741|r   28 AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LG--H-E-KFGGETHAY-NVAYKDCEIDAVLSNCDTI-IFNT  100 (367)
Q Consensus        28 ~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la--~-~-g~~~~~i~~-~~~~~~~el~~a~~~~~~i-~iDs  100 (367)
                      ..+++.=..|.-|...|........-.|-=.=..|+. .+  . + ..+.-+-.| ++ .-..-+..++.....| ++||
T Consensus        27 ~~V~LiaVsK~~~~e~I~~a~~~G~r~fGENrvQE~~~K~~~l~~~~~~~i~WHfIG~-LQsNKvk~iv~~~~~IhSVDs  105 (234)
T 1w8g_A           27 EEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGP-LQSNKSRLVAEHFDWCHTIDR  105 (234)
T ss_dssp             GGCEEEEECTTSCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEECSC-CCGGGHHHHHHHCSEEEEECS
T ss_pred             CCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHCCCCCEEHHHHH
T ss_conf             8769999989989999999998699714687418999999998751588806998257-410127661332110103102


Q ss_pred             CHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH-------HHCCCEEEEECCCCCCCC
Q ss_conf             2059999998612345--6148996357744310124557864357427888874-------314960665305656661
Q gi|254780741|r  101 VSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-------EIKNVNGLMFHNNCENKS  171 (367)
Q Consensus       101 ~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~~~-------~~~~i~Gih~H~gs~~~~  171 (367)
                      +.-.++|...+...+.  +|+|-||.            +...+|.|+..+++.+.       ...++.||.+- ++...+
T Consensus       106 ~kla~~l~~~~~~~~~~~~vliQVNi------------s~E~~K~G~~p~e~~~~~~~~~~~~~l~~~GLMti-~~~~~d  172 (234)
T 1w8g_A          106 LRIATRLNDQRPAELPPLNVLIQINI------------SDENSKSGIQLAELDELAAAVAELPRLRLRGLMAI-PAPESE  172 (234)
T ss_dssp             HHHHHHHHHHSCTTSCCEEEEEEECC------------SCTTCCCSBCGGGHHHHHHHHHTCTTEEEEEEEEC-CCCCCC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE-CCCCCC
T ss_conf             77999998543542687518999813------------77656678527779999999986799756788643-798402


Q ss_pred             HHHHHHHHHHHHHHHHH---CCCCCEEEEECC
Q ss_conf             47899999999989865---088750875337
Q gi|254780741|r  172 FLCFSAMLKNIEKEFGH---FITQIEWISLGG  200 (367)
Q Consensus       172 ~~~~~~~l~~~~~~~~~---~~~~l~~idiGG  200 (367)
                      .......+..+.+++.+   ....+..|..|=
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~LSMGM  204 (234)
T 1w8g_A          173 YVRQFEVARQMAVAFAGLKTRYPHIDTLSLGM  204 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC
T ss_conf             78999999999999999873279989667720


No 35 
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=95.24  E-value=0.16  Score=28.24  Aligned_cols=176  Identities=16%  Similarity=0.125  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHH----HH-----CCCEEEEEEECCCCHHHHHHHHHHCCEEEEECHHHHH-HHHC--------CC--
Q ss_conf             999999999999985----33-----6986999541059999999998518748980799998-9873--------68--
Q gi|254780741|r   11 KQKLLNNLDTALYIR----KN-----AGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEVM-LGHE--------KF--   70 (367)
Q Consensus        11 ~~~i~~n~~~~~~~~----~~-----~~~~i~yA~KaN~~~~il~~l~~~g~g~dv~S~~E~~-la~~--------g~--   70 (367)
                      .+.|++|+++++.-.    ..     ..+++.=..|.-|...|..++....-.|-=.=..|+. .+.+        ++  
T Consensus        22 ~~~i~~nl~~V~~rI~~A~~~agR~p~~V~LiAVSK~~p~e~I~~a~~~G~r~FGENrvQE~~~K~~~l~~~~~~~~~~~  101 (282)
T 3cpg_A           22 AREITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSL  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99999999999999999999829893665999998998999999999869970368708999999999876410001222


Q ss_pred             ---------C-CC-CEEECCCCCHHHHHHHHCCCCEE-EECCCHHHHHHHHHHHCCCC--CCEEEEEECCCCCCCCCCCC
Q ss_conf             ---------8-01-08853777803478861388689-85672059999998612345--61489963577443101245
Q gi|254780741|r   71 ---------G-GE-THAYNVAYKDCEIDAVLSNCDTI-IFNTVSQLNKFKDKAQKLHK--KIGLRINPSVSYSKFILADP  136 (367)
Q Consensus        71 ---------~-~~-~i~~~~~~~~~el~~a~~~~~~i-~iDs~~El~~i~~~a~~~~~--~I~lRinP~~~~~~~~~~~~  136 (367)
                               . ++ +--|=|..-..-++.++.....| ++||+..+++|...+...+.  +|+|-||-            
T Consensus       102 ~~~~~~~~~~~~~I~WHfIG~LQsNKvk~iv~~~~~IhSVDs~kla~~l~~~a~~~~~~~~vlIQVNi------------  169 (282)
T 3cpg_A          102 GVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNE------------  169 (282)
T ss_dssp             CCC------CCEEECEEECSCCCGGGHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCC------------
T ss_pred             CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECC------------
T ss_conf             22234444567772699944642000777651064665425643058899887624766169999625------------


Q ss_pred             CCCCCCCCCCHHHHHHH-------HHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHH----HCC---CCCEEEEEC
Q ss_conf             57864357427888874-------3149606653056566614789999999998986----508---875087533
Q gi|254780741|r  137 NRPFSRLGEKCKDKIES-------EIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFG----HFI---TQIEWISLG  199 (367)
Q Consensus       137 ~~~~skfG~~~~~~~~~-------~~~~i~Gih~H~gs~~~~~~~~~~~l~~~~~~~~----~~~---~~l~~idiG  199 (367)
                      ++..+|.|+..+++.+.       ...++.||.+- +....+..........+.++++    ...   ..+..|..|
T Consensus       170 s~E~sK~G~~p~e~~~l~~~i~~~~~l~l~GLMti-~p~~~d~~~~r~~F~~l~~l~d~l~~~~~~~~~~~~~LSMG  245 (282)
T 3cpg_A          170 SGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTI-GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMG  245 (282)
T ss_dssp             SSCTTSSSBCGGGHHHHHHHHHTCTTEEEEEEECC-CCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCHHCCEEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECH
T ss_conf             87756688787779999999865100102217863-68888877899999999999999998568877998988170


No 36 
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=90.35  E-value=0.86  Score=23.38  Aligned_cols=67  Identities=18%  Similarity=0.132  Sum_probs=46.2

Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             786459986233366645521356677887989999688702232434768998877999967990999973
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE  356 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~  356 (367)
                      +.-+||.+-|+-. |+.+-..-.--...++||.++|..-+-+.......|    .|.++++++++.+.-+|+
T Consensus        29 ~Rf~TYvI~g~~g-Sg~I~lNGaAAr~~~~GD~vII~sya~~~~~e~~~~----~P~vv~vde~N~i~~i~~   95 (96)
T 1vc3_B           29 ARLTTYALPGERG-SGVIGINGAAAHLVKPGDLVILVAYGVFDEEEARNL----KPTVVLVDERNRILEVRK   95 (96)
T ss_dssp             CEEEEECEEECTT-TTCEEEEGGGGGTCCTTCEEEEEEEEEECHHHHTTC----CCEEEEECTTCCEEEEEE
T ss_pred             CEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEEEC
T ss_conf             5888999972488-764874678873479999999998773798896268----777999999998998526


No 37 
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 1aw8_B 1aw8_E 1pyu_A 1aw8_A
Probab=81.80  E-value=2.4  Score=20.44  Aligned_cols=67  Identities=12%  Similarity=0.029  Sum_probs=44.3

Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             786459986233366645521356677887989999688702232434768998877999967990999973
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE  356 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~  356 (367)
                      +.-++|.|-|+-= |+.+-..-.--...++||.|+|..-+-+.......|    .|.++++++++.+.-++.
T Consensus        70 ~Rf~TYvI~g~~g-Sg~I~lNGAAAr~~~~GD~vII~sYa~~~~~e~~~~----~P~vv~vde~N~i~~~~~  136 (143)
T 1pqh_A           70 KRFSTYAIAAERG-SRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTW----RPNVAYFEGDNEMKRTAK  136 (143)
T ss_dssp             CEEEEEEEEECTT-CCCEECCGGGGGTCCTTCEEEEEEEEEEEHHHHTTC----CCEEEEEETTTEECC---
T ss_pred             CEEEEEEEECCCC-CCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEECC
T ss_conf             7799999963588-875874688885479999999998865896685278----766999999998868336


No 38 
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=81.68  E-value=2.4  Score=20.41  Aligned_cols=67  Identities=16%  Similarity=0.061  Sum_probs=46.2

Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf             786459986233366645521356677887989999688702232434768998877999967990999973
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE  356 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~  356 (367)
                      +.-++|.+-|+- -|+.+-..-.--...++||.++|..-+-+.......|    .|.++++++++.+.-+++
T Consensus        53 ~Rf~TYvI~g~~-gSg~I~lNGaAA~~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i~~~~~  119 (139)
T 2c45_A           53 ARLVTYAITGER-GSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTY----QPRIVFVDAYNKPIDMGH  119 (139)
T ss_dssp             CEEEECEEEECT-TTTCEEEESSTTTTSCTTCEEEEEECCEEEHHHHHSC----CCEEEECCTTCC------
T ss_pred             CEEEEEEEECCC-CCCEEEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEECC
T ss_conf             588999987688-8852763667874469999999998774798897268----777999899998878467


No 39 
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=81.24  E-value=2.5  Score=20.31  Aligned_cols=64  Identities=20%  Similarity=0.209  Sum_probs=43.2

Q ss_pred             CCCCEEEEEECCCCCCCCEEEEC-CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEE
Q ss_conf             47864599862333666455213-566778879899996887022324347689988779999679909999
Q gi|254780741|r  284 NTGPYTAMVCGRSCLAGDIFGEF-HFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAI  354 (367)
Q Consensus       284 ~~~~~~~~v~G~~C~~~D~l~~~-~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~  354 (367)
                      .+.-+||.+-|+-  |+. ++-+ .--...++||.++|..-+-+.......|    .|.++++++++.+.-.
T Consensus        27 G~Rf~TYvI~g~~--sg~-I~lNGaAAr~~~~GD~vII~sy~~~~~~e~~~~----~P~vv~vd~~N~i~~~   91 (97)
T 1uhe_A           27 GERFSTYVILGKK--RGE-ICVNGAAARKVAIGDVVIILAYASMNEDEINAH----KPSIVLVDEKNEILEK   91 (97)
T ss_dssp             CCEEEEECEEECS--TTC-EEEEGGGGGGCCTTCEEEEEEEEEECHHHHHHC----CCEEEEECTTSCEEEE
T ss_pred             CCEEEEEEEECCC--CCE-EEECCHHHHCCCCCCEEEEEECCCCCHHHHHCC----CCEEEEECCCCCEEEC
T ss_conf             9588989983278--887-987878983479999999998764798898348----8779998999967141


No 40 
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=66.47  E-value=5.1  Score=18.27  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=22.2

Q ss_pred             EEEEHHHHHHHHHHHHHH---HHH-----CCCEEEEEEECC--CCHHHHHHHHHHC
Q ss_conf             897799999999999998---533-----698699954105--9999999998518
Q gi|254780741|r    7 YLIDKQKLLNNLDTALYI---RKN-----AGVKLLLALKCF--AAWGMFDTLNQYM   52 (367)
Q Consensus         7 yv~d~~~i~~n~~~~~~~---~~~-----~~~~i~yA~KaN--~~~~il~~l~~~g   52 (367)
                      .||+...|.+++.....-   ++.     ....+.|++|-.  ....+|+.+.+.+
T Consensus         4 ~~~~~~vla~~i~D~~~~~~~i~~~~~~~~ktSiiFSLkd~vGsLaraLkvFe~~~   59 (429)
T 1phz_A            4 VVLENGVLSRKLSDFGQETSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEEND   59 (429)
T ss_dssp             ---------------CCCCSCCCCCCCSSCCEEEEEEEECCTTHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             44222256666765136777216787878608999996876158999999999869


No 41 
>1toh_A Tyroh, tyrosine hydroxylase; neurotransmitter biosynthesis, non-heme iron, pterin CO-substrate; 2.30A {Rattus norvegicus} SCOP: d.178.1.1 PDB: 2toh_A*
Probab=57.98  E-value=8.2  Score=16.93  Aligned_cols=10  Identities=20%  Similarity=0.518  Sum_probs=3.2

Q ss_pred             CCCHHHHHHH
Q ss_conf             6720599999
Q gi|254780741|r   99 NTVSQLNKFK  108 (367)
Q Consensus        99 Ds~~El~~i~  108 (367)
                      |++-+|+.+.
T Consensus       113 d~IPql~dvs  122 (343)
T 1toh_A          113 DSIPQLEDVS  122 (343)
T ss_dssp             TBCCCHHHHH
T ss_pred             CCCCCHHHHH
T ss_conf             6799989999


No 42 
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583}
Probab=48.09  E-value=10  Score=16.28  Aligned_cols=33  Identities=9%  Similarity=-0.000  Sum_probs=20.5

Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEEC
Q ss_conf             78645998623336664552135667788798999968
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFED  322 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~  322 (367)
                      +......|+|..+++.     -.+++-+++|+..-|..
T Consensus       327 p~d~r~NVVG~I~~ed-----~~LLd~I~p~~~Fk~i~  359 (372)
T 2p0o_A          327 PKDEKVNTITRIIDKD-----QTILPLIKAGNQFTLVT  359 (372)
T ss_dssp             CCCTTEEEEEEBCGGG-----GGGGGGCCTTCEEEEEE
T ss_pred             CCCCCEEEEEEECHHH-----HHHHHHCCCCCEEEEEE
T ss_conf             8999755679988888-----87998558998289998


No 43 
>2prv_A Uncharacterized protein YOBK; NP_389780.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1
Probab=42.45  E-value=14  Score=15.35  Aligned_cols=52  Identities=10%  Similarity=-0.051  Sum_probs=31.9

Q ss_pred             CCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECCCCEEEEEECCHHHHHHHC
Q ss_conf             9899996887022324347689988779999679909999738989998742
Q gi|254780741|r  315 GDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNNL  366 (367)
Q Consensus       315 GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~g~~~~~r~e~~~d~~~~~  366 (367)
                      ..+++|.+.|...+.+-..-.....+.++++..+.........||.+++.++
T Consensus        86 ~~~i~i~~~~g~~~~~d~~~~~~~e~~V~~~d~~~~~~~~va~sF~efL~~~  137 (153)
T 2prv_A           86 DGLVVIEDVDYFAYCLDTNKMKDGECPVVEWDRVIGYQDTVADSFIEFFYNK  137 (153)
T ss_dssp             TTEEEEEECSSEEEEEETTSCBTTBCCEEEEETTTEEEEEEESSHHHHHHHH
T ss_pred             CCEEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCCEEEEHHCHHHHHHHH
T ss_conf             7638997189977998713576787757999758980777101899999999


No 44 
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=42.24  E-value=14  Score=15.32  Aligned_cols=15  Identities=40%  Similarity=0.592  Sum_probs=9.1

Q ss_pred             HHHHHHCCCEEEEEH
Q ss_conf             987542165045300
Q gi|254780741|r  219 KEFSEKYSVQIYLEP  233 (367)
Q Consensus       219 ~~~~~~~~~~l~iEP  233 (367)
                      .+..+++++++.+||
T Consensus       129 ~~~a~~~gv~l~iE~  143 (278)
T 1i60_A          129 SDIAEPYGVKIALEF  143 (278)
T ss_dssp             HHHHGGGTCEEEEEC
T ss_pred             HHHHHHHCCCEEEEE
T ss_conf             999986198448984


No 45 
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp}
Probab=37.39  E-value=17  Score=14.84  Aligned_cols=58  Identities=16%  Similarity=0.124  Sum_probs=36.5

Q ss_pred             CCCEEEEEECCCCCCCCEEEECCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEEEEECC
Q ss_conf             7864599862333666455213566778879899996887022324347689988779999679
Q gi|254780741|r  285 TGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVD  348 (367)
Q Consensus       285 ~~~~~~~v~G~~C~~~D~l~~~~~~~~l~~GD~l~i~~~GAY~~~~~~~Fn~~~~P~~v~~~~~  348 (367)
                      +.-++|.+-|+- -|+++-..-.--...++||.|+|.   +|+..-... -.+ .|.+++++++
T Consensus        56 ~Rf~TYvI~g~~-gSg~I~lNGaAArl~~~GD~vII~---sya~~~~~~-~~~-~P~vv~~de~  113 (114)
T 3oug_A           56 ERLETYVIKGEP-NSKTIALNGPAARRCEIGDQLFII---SYTQVDPTR-ENI-KPKLVDLKTG  113 (114)
T ss_dssp             CEEEEEEEEECT-TSCCEEEEGGGGGGCCTTCEEEEE---EEEEECTTS-CCC-CCEEEECC--
T ss_pred             CEEEEEEEECCC-CCCEEEECCHHHHCCCCCCEEEEE---ECCCCCHHH-HCC-CCEEEEECCC
T ss_conf             389989997479-975686276786206999999999---874178479-679-8769996899


No 46 
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=34.61  E-value=19  Score=14.55  Aligned_cols=116  Identities=14%  Similarity=0.224  Sum_probs=47.7

Q ss_pred             CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHH--HHHHCCCEEE-EECCC-CCCCCHHH
Q ss_conf             67205999999861234561489963577443101245578643574278888--7431496066-53056-56661478
Q gi|254780741|r   99 NTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKI--ESEIKNVNGL-MFHNN-CENKSFLC  174 (367)
Q Consensus        99 Ds~~El~~i~~~a~~~~~~I~lRinP~~~~~~~~~~~~~~~~skfG~~~~~~~--~~~~~~i~Gi-h~H~g-s~~~~~~~  174 (367)
                      =|.+|+..|.+.|+..    +|||-|.+..++|...        +.-...+..  ........+. .-++. +.....+.
T Consensus        92 YT~~di~eiv~yA~~r----gI~VIPEiD~PGH~~~--------~l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f  159 (367)
T 1yht_A           92 LSYRQLDDIKAYAKAK----GIELIPELDSPNHMTA--------IFKLVQKDRGVKYLQGLKSRQVDDEIDITNADSITF  159 (367)
T ss_dssp             BCHHHHHHHHHHHHHT----TCEEEEEEEESSSCHH--------HHHHHHHHHCHHHHHHHBCSSCTTSBCTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC----CCEEEECCCCHHHHHH--------HHHHCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             4899999999999986----9889754776057999--------998470530787655677777786457788889999


Q ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCC-CCCC-CCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             999999999898650887508753377-6664-455680789999998754216504
Q gi|254780741|r  175 FSAMLKNIEKEFGHFITQIEWISLGGG-IHFT-DKDYPVKDFCQRLKEFSEKYSVQI  229 (367)
Q Consensus       175 ~~~~l~~~~~~~~~~~~~l~~idiGGG-~~~~-~~~~~~~~~~~~i~~~~~~~~~~l  229 (367)
                      +..+++.+.++|.   ...++++|||- .... ....+...+.+.+.++.++++.+.
T Consensus       160 i~~v~~e~~~~F~---~~s~~iHiGgDE~~~~~~~~~~~~~~~~~~~~~v~~~gk~~  213 (367)
T 1yht_A          160 MQSLMSEVIDIFG---DTSQHFHIGGDEFGYSVESNHEFITYANKLSYFLEKKGLKT  213 (367)
T ss_dssp             HHHHHHHHHHHHG---GGCSEEEEECCSCCTTSCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHCC---CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf             9999999998637---86554784355455453654189999999999999779989


No 47 
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomics, PSI, protein structure initiative; 1.57A {Enterococcus faecalis V583} SCOP: b.161.1.1
Probab=33.70  E-value=19  Score=14.46  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=20.5

Q ss_pred             CCCCEEEECCCCCCCCCCCEEEEECCCC
Q ss_conf             6664552135667788798999968870
Q gi|254780741|r  298 LAGDIFGEFHFEKPVKIGDRISFEDVAG  325 (367)
Q Consensus       298 ~~~D~l~~~~~~~~l~~GD~l~i~~~GA  325 (367)
                      .++.+..+...+|++++||.+.|.--||
T Consensus       102 LPG~I~v~~~~~P~i~vG~~I~~i~~~~  129 (129)
T 2f9h_A          102 IRNGVYLTPHQLPKITIGTTIDYLVNGA  129 (129)
T ss_dssp             CTTEEEEESCSCCCCCTTCEEEEEC---
T ss_pred             CCCEEEECCCCCCCCCCCCEEEEEECCC
T ss_conf             8986998878899788999999986689


No 48 
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri}
Probab=31.00  E-value=21  Score=14.17  Aligned_cols=12  Identities=25%  Similarity=0.479  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             789999999998
Q gi|254780741|r  173 LCFSAMLKNIEK  184 (367)
Q Consensus       173 ~~~~~~l~~~~~  184 (367)
                      +.+.+.++.+.+
T Consensus       176 ~~~~~ll~~~~~  187 (354)
T 3cyv_A          176 QALHALLDKLAK  187 (354)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999999


No 49 
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=27.88  E-value=24  Score=13.82  Aligned_cols=26  Identities=12%  Similarity=0.111  Sum_probs=15.4

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             66530565666147899999999989
Q gi|254780741|r  160 GLMFHNNCENKSFLCFSAMLKNIEKE  185 (367)
Q Consensus       160 Gih~H~gs~~~~~~~~~~~l~~~~~~  185 (367)
                      .+-+-.|---+..+.|.+.++.+.++
T Consensus       207 ~~DLI~GlPgqt~e~~~~tl~~~~~l  232 (457)
T 1olt_A          207 NIDLIYGLPKQTPESFAFTLKRVAEL  232 (457)
T ss_dssp             EEEEEESCTTCCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             23315779983377888899888840


No 50 
>2vef_A Dihydropteroate synthase; antibiotic resistance, folic acid, transferase, biosynthesis, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=27.32  E-value=25  Score=13.76  Aligned_cols=19  Identities=11%  Similarity=0.050  Sum_probs=12.0

Q ss_pred             CCCCEEEEEEEEEEECCCC
Q ss_conf             4574188878878630443
Q gi|254780741|r  238 VTNTTTLNTTVLDISENIK  256 (367)
Q Consensus       238 v~~ag~lv~~V~~~K~~~~  256 (367)
                      ....|.-+.||-|+|++..
T Consensus       273 a~~~Ga~iiRVHDV~e~~~  291 (314)
T 2vef_A          273 AARQGVEVVRVHDVASHRM  291 (314)
T ss_dssp             HHHTTCSEEEESCHHHHHH
T ss_pred             HHHCCCCEEEECCHHHHHH
T ss_conf             9987998999389799999


No 51 
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=25.73  E-value=26  Score=13.61  Aligned_cols=15  Identities=7%  Similarity=0.096  Sum_probs=10.1

Q ss_pred             CCCCCCCCCEEEEEC
Q ss_conf             667788798999968
Q gi|254780741|r  308 FEKPVKIGDRISFED  322 (367)
Q Consensus       308 ~~~~l~~GD~l~i~~  322 (367)
                      ..|++++|||++++-
T Consensus        38 ~~~~~~vGDyVLVH~   52 (90)
T 2ot2_A           38 ENGQPRVGQWVLVHV   52 (90)
T ss_dssp             TTSCBCTTCEEEEET
T ss_pred             CCCCCCCCCEEEEEC
T ss_conf             776467788999961


No 52 
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=24.00  E-value=28  Score=13.36  Aligned_cols=30  Identities=13%  Similarity=0.112  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             478999999999898650887508753377
Q gi|254780741|r  172 FLCFSAMLKNIEKEFGHFITQIEWISLGGG  201 (367)
Q Consensus       172 ~~~~~~~l~~~~~~~~~~~~~l~~idiGGG  201 (367)
                      +..+.++++.+.+++.+-+...++++|||-
T Consensus       483 ~~Fl~~Vi~Ev~~lF~~a~~p~~~iHiGGD  512 (858)
T 1c7s_A          483 QRFVDKVIGEIAQMHKEAGQPIKTWHFGGA  512 (858)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCEEEECC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             889999999999860002688876997875


No 53 
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=21.85  E-value=31  Score=13.09  Aligned_cols=44  Identities=9%  Similarity=0.084  Sum_probs=17.2

Q ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
Q ss_conf             66530565666147899999999989865088750875337766644
Q gi|254780741|r  160 GLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTD  206 (367)
Q Consensus       160 Gih~H~gs~~~~~~~~~~~l~~~~~~~~~~~~~l~~idiGGG~~~~~  206 (367)
                      ++++|.++|.  ....+..+..+..+-.+ ...+..-++||||+...
T Consensus       759 ~l~V~~sTQ~--p~~~r~~vA~~Lgip~~-~V~V~~~~vGGgFG~K~  802 (1332)
T 1v97_A          759 EMELFVSTQN--AMKTQSFVAKMLGVPVN-RILVRVKRMGGGFGGKE  802 (1332)
T ss_dssp             CEEEEECCSC--HHHHHHHHHHHHTSCGG-GEEEEECCCSCCTTTTS
T ss_pred             EEEEEECCCC--HHHHHHHHHHHHCCCHH-HEEEEECCCCCCCCCCC
T ss_conf             5999989968--99999999999789889-98999188886988888


No 54 
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=21.64  E-value=32  Score=13.06  Aligned_cols=16  Identities=19%  Similarity=0.235  Sum_probs=11.5

Q ss_pred             CCCCCCCCCCEEEEEC
Q ss_conf             5667788798999968
Q gi|254780741|r  307 HFEKPVKIGDRISFED  322 (367)
Q Consensus       307 ~~~~~l~~GD~l~i~~  322 (367)
                      .+.|++++|||++++-
T Consensus        31 ~lv~~~~vGDyVLVH~   46 (75)
T 2z1c_A           31 DLMPDTKPGDWVIVHT   46 (75)
T ss_dssp             TTSTTCCTTCEEEEET
T ss_pred             EEECCCCCCCEEEEEE
T ss_conf             8608999998999940


Done!