RPSBLAST alignment for GI: 254780741 and conserved domain: cd06828
>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Length = 373
Score = 75.6 bits (187), Expect = 2e-14
Identities = 80/370 (21%), Positives = 141/370 (38%), Gaps = 63/370 (17%)
Query: 4 TPYYLIDKQKLLNN---LDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSL 60
TP Y+ D+ + N L A G K+ A+K + + L + G S
Sbjct: 3 TPLYVYDEATIRENYRRLKEAF---SGPGFKICYAVKANSNLAILKLLAEEGLGADVVSG 59
Query: 61 YEVMLGHE-KFGGET---HAYNVAYKDCEIDAVLSNCDTIIFN--TVSQLNKFKDKAQKL 114
E+ + F E + + E++ L + N ++S+L + + A +L
Sbjct: 60 GELYRALKAGFPPERIVFTGNGKSDE--ELELALEL-GILRINVDSLSELERLGEIAPEL 116
Query: 115 HKK--IGLRINPSV------------SYSKF-ILADPNRPFSRLGEKCKDKIESEIKNVN 159
K + LR+NP V SKF I P + E + E +
Sbjct: 117 GKGAPVALRVNPGVDAGTHPYISTGGKDSKFGI------PLEQALEAYRRAKELPGLKLV 170
Query: 160 GLMFH---NNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGG--IHFTDKDYP--VK 212
GL H + + F+ + L ++ E +E++ LGGG I + D+D P ++
Sbjct: 171 GLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIE 230
Query: 213 DFCQRLKEFSEKYS-----VQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSV- 265
++ + + E ++ +++ +EPG IV N L T V + E K V VD+ +
Sbjct: 231 EYAEAIAEALKELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMN 290
Query: 266 --------EAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDR 317
A+ + + T V G C +GD+F + V+ GD
Sbjct: 291 DLIRPALYGAYHEIVPVNKPGE---GETEKVD--VVGPICESGDVFAKDRELPEVEEGDL 345
Query: 318 ISFEDVAGYN 327
++ D Y
Sbjct: 346 LAIHDAGAYG 355