RPSBLAST alignment for GI: 254780741 and conserved domain: cd06828

>gnl|CDD|143501 cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Length = 373
 Score = 75.6 bits (187), Expect = 2e-14
 Identities = 80/370 (21%), Positives = 141/370 (38%), Gaps = 63/370 (17%)

Query: 4   TPYYLIDKQKLLNN---LDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSL 60
           TP Y+ D+  +  N   L  A       G K+  A+K  +   +   L +   G    S 
Sbjct: 3   TPLYVYDEATIRENYRRLKEAF---SGPGFKICYAVKANSNLAILKLLAEEGLGADVVSG 59

Query: 61  YEVMLGHE-KFGGET---HAYNVAYKDCEIDAVLSNCDTIIFN--TVSQLNKFKDKAQKL 114
            E+    +  F  E         + +  E++  L     +  N  ++S+L +  + A +L
Sbjct: 60  GELYRALKAGFPPERIVFTGNGKSDE--ELELALEL-GILRINVDSLSELERLGEIAPEL 116

Query: 115 HKK--IGLRINPSV------------SYSKF-ILADPNRPFSRLGEKCKDKIESEIKNVN 159
            K   + LR+NP V              SKF I      P  +  E  +   E     + 
Sbjct: 117 GKGAPVALRVNPGVDAGTHPYISTGGKDSKFGI------PLEQALEAYRRAKELPGLKLV 170

Query: 160 GLMFH---NNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGG--IHFTDKDYP--VK 212
           GL  H      + + F+  +  L ++  E       +E++ LGGG  I + D+D P  ++
Sbjct: 171 GLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIE 230

Query: 213 DFCQRLKEFSEKYS-----VQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSV- 265
           ++ + + E  ++       +++ +EPG  IV N   L T V  + E   K  V VD+ + 
Sbjct: 231 EYAEAIAEALKELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMN 290

Query: 266 --------EAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDR 317
                    A+     + +        T      V G  C +GD+F +      V+ GD 
Sbjct: 291 DLIRPALYGAYHEIVPVNKPGE---GETEKVD--VVGPICESGDVFAKDRELPEVEEGDL 345

Query: 318 ISFEDVAGYN 327
           ++  D   Y 
Sbjct: 346 LAIHDAGAYG 355