RPSBLAST alignment of GI: 254780741 and protein with PDBid: 3n2b
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441
Score = 151 bits (382), Expect = 3e-37
Identities = 65/388 (16%), Positives = 124/388 (31%), Gaps = 30/388 (7%)
Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63
TP Y+ + L + + + A+K + G+ +TL + G S+ E+
Sbjct: 52 TPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGEL 111
Query: 64 MLGHEKFGGETHAYNVAYKDCEID---AVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--I 118
G + E + A+ + +L + A +L K I
Sbjct: 112 ERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPI 171
Query: 119 GLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIK-------NVNGLMFHNNCENKS 171
LRINP V ++ G + +V+G+ H + +
Sbjct: 172 SLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTA 231
Query: 172 FLCFSAMLKNIE------KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRL-KEFSEK 224
F + K G I ++ G ++ + ++ + L
Sbjct: 232 LAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLERH 291
Query: 225 YSVQIYLEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPDYLLYQESATIYP 283
+++ EPG AI N L T V + KN I+D+++ + LYQ I P
Sbjct: 292 RDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPA-LYQAWQDIIP 350
Query: 284 NTG----PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINM 339
T + G C D G+ + ++ GD ++ Y + +N
Sbjct: 351 LRPRQGEAQTYDLVGPVCETSDFLGK-DRDLVLQEGDLLAVRSSGAYGFTMSSNYNTRPR 409
Query: 340 P-TIAVKNVDGTIKAIRE-FSYNDYYNN 365
+ V +R+ + +
Sbjct: 410 VAEVMVD--GNKTYLVRQREELSSLWAL 435