RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] (367 letters) >3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Length = 418 Score = 285 bits (731), Expect = 8e-78 Identities = 139/378 (36%), Positives = 211/378 (55%), Gaps = 18/378 (4%) Query: 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLY 61 I+TP Y++++ KL N + + + +G K+LLALK FA G + +Y+ G T S L+ Sbjct: 42 IQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLW 101 Query: 62 EVMLGHEKFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLR 121 E E E H Y+ A+K+ EI + S I+FN+++Q +KF+ K QK +GLR Sbjct: 102 EAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQSKTQK--NSLGLR 159 Query: 122 INPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKN 181 N S + L +P +SRLG + KD ++ + GL FH CE + A+LK Sbjct: 160 CNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAIEGLHFHALCEESAD-ALEAVLKV 218 Query: 182 IEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNT 241 E++FG +I Q++W++ GGG H T K Y V+ K FS+KY VQ+YLEPGEA+ T Sbjct: 219 FEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQT 278 Query: 242 TTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIY---------------PNTG 286 L +V+DI EN K + I+D+S EAH+PD ++ ++ + Sbjct: 279 GNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKEN 338 Query: 287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKN 346 + ++ G +CLAGD+ GE+ F+K +KIGD+I F D Y I + FNGI +P + + + Sbjct: 339 EFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLD 398 Query: 347 VDGTIKAIREFSYNDYYN 364 ++ IREFSY DY Sbjct: 399 HKNELQMIREFSYKDYSL 416 >3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Length = 365 Score = 272 bits (696), Expect = 8e-74 Identities = 215/367 (58%), Positives = 274/367 (74%), Gaps = 2/367 (0%) Query: 1 MIKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSL 60 MI+TPYYLIDK KL N++ ++R+ +G K LLALKCFA W +FD + YMDGTTSSSL Sbjct: 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSL 60 Query: 61 YEVMLGHEKFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGL 120 +EV LG E+FG ETHAY+VAY D EID V+S+ D IIFN++SQL +F DKA + GL Sbjct: 61 FEVRLGRERFGKETHAYSVAYGDNEIDEVVSHADKIIFNSISQLERFADKAAGI--ARGL 118 Query: 121 RINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLK 180 R+NP VS S F LADP RPFSRLGE K+E + +NG M HNNCENK F F ML Sbjct: 119 RLNPQVSSSSFDLADPARPFSRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLFDRMLG 178 Query: 181 NIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTN 240 IE+ FG I +++W+SLGGGIHFT DYPV F RL+ FS++Y VQIYLEPGEA +T Sbjct: 179 EIEERFGALIARVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQIYLEPGEASITK 238 Query: 241 TTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAG 300 +TTL TVLD N KNL IVDSS+EAH+ D L+Y+E+A + PN G ++ M+CG+SCLAG Sbjct: 239 STTLEVTVLDTLYNGKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAG 298 Query: 301 DIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIREFSYN 360 D+FGEF F + +K+GDRISF+D AGY + +KNWFNG+ MP IA++ +DG+++ +REF+Y Sbjct: 299 DVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYA 358 Query: 361 DYYNNLS 367 DY +LS Sbjct: 359 DYEQSLS 365 >3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Length = 441 Score = 151 bits (382), Expect = 3e-37 Identities = 65/388 (16%), Positives = 124/388 (31%), Gaps = 30/388 (7%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63 TP Y+ + L + + + A+K + G+ +TL + G S+ E+ Sbjct: 52 TPLYVYSRATLERHWHAFDKSVGDYPHLICYAVKANSNLGVLNTLARLGSGFDIVSVGEL 111 Query: 64 MLGHEKFGGETHAYNVAYKDCEID---AVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--I 118 G + E + A+ + +L + A +L K I Sbjct: 112 ERVLAAGGDPSKVVFSGVGKTEAEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPI 171 Query: 119 GLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIK-------NVNGLMFHNNCENKS 171 LRINP V ++ G + +V+G+ H + + Sbjct: 172 SLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPNLDVHGIDCHIGSQLTA 231 Query: 172 FLCFSAMLKNIE------KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRL-KEFSEK 224 F + K G I ++ G ++ + ++ + L Sbjct: 232 LAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRLERH 291 Query: 225 YSVQIYLEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPDYLLYQESATIYP 283 +++ EPG AI N L T V + KN I+D+++ + LYQ I P Sbjct: 292 RDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFAIIDAAMNDLIRPA-LYQAWQDIIP 350 Query: 284 NTG----PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINM 339 T + G C D G+ + ++ GD ++ Y + +N Sbjct: 351 LRPRQGEAQTYDLVGPVCETSDFLGK-DRDLVLQEGDLLAVRSSGAYGFTMSSNYNTRPR 409 Query: 340 P-TIAVKNVDGTIKAIRE-FSYNDYYNN 365 + V +R+ + + Sbjct: 410 VAEVMVD--GNKTYLVRQREELSSLWAL 435 >2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8} Length = 386 Score = 138 bits (347), Expect = 3e-33 Identities = 60/375 (16%), Positives = 121/375 (32%), Gaps = 15/375 (4%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63 TP Y+ ++ L + + + A+K + L + G + E+ Sbjct: 13 TPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLKILREEGFGMDVVTKGEL 72 Query: 64 MLGHEKFGGETHAYNVAY---KDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGL 120 + +D + + + ++ ++ +++ + + + Sbjct: 73 LAAKLAGVPSHTVVWNGNGKSRDQMEHFLREDVRIVNVDSFEEMEIWRELNPE-GVEYFI 131 Query: 121 RINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIK----NVNGLMFHNNCENKSFLCFS 176 R+NP V + G +D + N+ GL H + F Sbjct: 132 RVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFRSMNIRGLHVHIGSQITRVEPFV 191 Query: 177 AMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSV-QIYLEPGE 235 + + + E I++GGG + R K + ++ +E G Sbjct: 192 EAFSKVVRASERY--GFEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFKRVIVEIGR 249 Query: 236 AIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPD--YLLYQESATIYPNTGPYTAMV 292 IV + L V+ + K V+VD + + Y Y + A V Sbjct: 250 YIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNVLIRPALYSAYHRIFVLGKQGKEMRADV 309 Query: 293 CGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIK 352 G C +GD+ V+ GD I+ E+ Y N +N P + +G I Sbjct: 310 VGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVRENGRIS 369 Query: 353 AIRE-FSYNDYYNNL 366 IR + D + ++ Sbjct: 370 LIRRRETEMDIFKDV 384 >1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Length = 425 Score = 135 bits (342), Expect = 1e-32 Identities = 77/387 (19%), Positives = 135/387 (34%), Gaps = 37/387 (9%) Query: 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYE 62 P+++ D ++ +T + + V A+KC W + TL G +S E Sbjct: 37 GDPFFVADLGDIVRKHET--WKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTE 94 Query: 63 VMLGHE-KFGGETHAYNVAYK-DCEID-AVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIG 119 + E Y K I A S D + F+ V +L K K K+ Sbjct: 95 IQRVRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKA--KMV 152 Query: 120 LRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAML 179 LRI+ S ++ L+ ++ + +V G+ FH + F+ + Sbjct: 153 LRISTDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAI 212 Query: 180 KNIEKEFGHFIT---QIEWISLGGGIHFT-DKDYPVKDFCQRLKEFSEKY-----SVQIY 230 + F + + +GGG T D ++ + EK+ + I Sbjct: 213 SDSRFVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIV 272 Query: 231 LEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESA-------TIY- 282 EPG V + TL V+ V + E++ ++ Y +Y Sbjct: 273 AEPGRYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYD 332 Query: 283 -------------PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNIN 329 PN Y + V G +C D E ++ +++G+ + FED+ Y + Sbjct: 333 HAVVRPLPQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVV 392 Query: 330 RKNWFNGINMPTIAVKNVDGTIKAIRE 356 + FNG PTI +RE Sbjct: 393 GTSSFNGFQSPTIYYVVSGLPDHVVRE 419 >2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425 Score = 118 bits (297), Expect = 2e-27 Identities = 68/387 (17%), Positives = 124/387 (32%), Gaps = 25/387 (6%) Query: 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYE 62 KTP+YL D K+ K + ALK + + L G S+ E Sbjct: 32 KTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGADCVSIGE 91 Query: 63 VMLGHEKFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFK-----DKAQKLHKK 117 + + + + I+F V + K ++ + + Sbjct: 92 IQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKAR 151 Query: 118 IGLRINPSVSYSKFILADPNRPFSRLG-------EKCKDKIESEIKNVNGLMFHNNCENK 170 I +RINP++ ++ G E +S + FH + Sbjct: 152 ISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVSVHFHIGSQLL 211 Query: 171 SFLCFS------AMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEK 224 A + G + + G + ++ + D+ Q + + Sbjct: 212 DLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNALQG 271 Query: 225 YSVQIYLEPGEAIVTNTTTLNTTVLDISENI-KNLVIVDSSVEAHVPDYLLYQESATIYP 283 + I EPG +IV + L T VL + K VIVD+ + + L + + A Sbjct: 272 LDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPSLYHAKHAIRVI 331 Query: 284 NTG----PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINM 339 V G C + D F + ++ GD+I+ E V Y + + +N Sbjct: 332 TPSKGREISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSMASQYNSRPK 391 Query: 340 PTIAVKNVDGTIKAIRE-FSYNDYYNN 365 D I+ IR+ + D + Sbjct: 392 LLELALE-DHKIRVIRKREALEDLWRL 417 >2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5} Length = 420 Score = 113 bits (282), Expect = 8e-26 Identities = 69/386 (17%), Positives = 131/386 (33%), Gaps = 27/386 (6%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63 TP Y+ + + Y + + A+K + L + G S E+ Sbjct: 34 TPLYVYSSNFIKERFEA--YRKAFPDALICYAVKANFNPHLVKLLGELGAGADIVSGGEL 91 Query: 64 MLGHEKFGGETH---AYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHK--KI 118 L + A + DAV S + +L+ + A KL K +I Sbjct: 92 YLAKKAGIPPERIVYAGVGKTEKELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARI 151 Query: 119 GLRINPSVSYSKFILADPNRPFSRLGEKCKDKIES-----EIKNVNGLMFHNNCENKSF- 172 +R+NP V S+ G ++ + +++N+ + H + ++ Sbjct: 152 AIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLENLEIVGIHCHIGSQILD 211 Query: 173 --LCFSAMLKNIEKEFGHFITQIEWISLGGGI------HFTDKDYPVKDFCQRLKEFSEK 224 A+ K + + L G DK+ +D LK+ E Sbjct: 212 ISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLEN 271 Query: 225 YSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATIY- 282 +I LEPG +I+ N L T V + + K+ +IVD+ + + + I Sbjct: 272 VKAKIILEPGRSIMGNAGILITQVQFLKDKGSKHFIIVDAGMNDLIRPSIYNAYHHIIPV 331 Query: 283 --PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMP 340 A + G C GD + V+ G+ ++ Y + +N Sbjct: 332 ETKERKKVVADIVGPICETGDFLALDREIEEVQRGEYLAVLSAGAYGFAMSSHYNMRPRA 391 Query: 341 TIAVKNVDGTIKAIREF-SYNDYYNN 365 + +G++K IR+ +Y+ Sbjct: 392 AEVLVE-NGSVKLIRKRENYDYIVEP 416 >1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Length = 425 Score = 110 bits (275), Expect = 5e-25 Identities = 57/402 (14%), Positives = 123/402 (30%), Gaps = 50/402 (12%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63 P ++ D Q + + + A K + + + + S SL E+ Sbjct: 26 CPVWVYDAQIIRRQIAAL-----KQFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEI 80 Query: 64 ML------GHEKFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK 117 + + ++ V + +V L++ + + Sbjct: 81 ERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPVNAGSVDMLDQLGQVSPG--HR 138 Query: 118 IGLRINPSVSYSKFILADPNRPFSRLG------EKCKDKIESEIKNVNGLMFH--NNCEN 169 + LR+NP + + S+ G D I+ + G+ H + + Sbjct: 139 VWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDY 198 Query: 170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHF-------TDKDYPVKDFCQRLKEFS 222 + EFG + I + T+ Y + + + Sbjct: 199 AHLEQVCGAMVRQVIEFGQDLQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARH 258 Query: 223 EKYSVQIYLEPGEAIVTNTTTLNTTVLDISEN-IKNLVIVDSSVEAHVPDYLLYQESATI 281 + V++ +EPG +V + L T V + + ++ V+VD+ + +Y I Sbjct: 259 LGHPVKLEIEPGRFLVAQSGVLITQVRSVKQMGSRHFVLVDAGF-NDLMRPAMYGSYHHI 317 Query: 282 YP---------NTGPYTAMVCGRSCLAGDIFGEFHFEK-------PVKIGDRISFEDVAG 325 + +V G C +GD+F + VK GD + D Sbjct: 318 SALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGA 377 Query: 326 YNINRKNWFNGINMP-TIAVKNVDGTIKAIRE-FSYNDYYNN 365 Y + + +N + + +G + IR + + Sbjct: 378 YGASMSSNYNSRPLLPEVLFD--NGQARLIRRRQTIEELLAL 417 >2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A Length = 467 Score = 105 bits (261), Expect = 2e-23 Identities = 49/408 (12%), Positives = 115/408 (28%), Gaps = 49/408 (12%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63 TP ++ID+ + +G + A K F + +++ + E+ Sbjct: 42 TPLFVIDEDDFRSRCR-ETAAAFGSGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGEL 100 Query: 64 MLGHEKFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRIN 123 + + + + V + + ++ + + G+ + Sbjct: 101 AVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEI-ERLDAIAGEAGIVQD 159 Query: 124 PSVSYSKFILADPNRPFSRLGEKCKDKIESEI---------------KNVNGLMFHNNCE 168 V + + A + S E K + + GL H + Sbjct: 160 VLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQ 219 Query: 169 NKSFLCFSA-----------MLKNIEKEFGHFITQIEWISLGGGIHFTDKDY-------- 209 F ++ E I ++ G + D Sbjct: 220 IFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAA 279 Query: 210 PVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENI------KNLVIVDS 263 + + ++ +EPG AI T V + + + V VD Sbjct: 280 KLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSATAHRRYVSVDG 339 Query: 264 SVEAHVPDYLLYQESATIY----PNTGPYTAMVCGRSCLAGDIFGE-FHFEKPVKIGDRI 318 + ++ L + + P A + G+ C +GDI ++ GD + Sbjct: 340 GMSDNIRTALYGAQYDVRLVSRVSDAPPVPARLVGKHCESGDIIVRDTWVPDDIRPGDLV 399 Query: 319 SFEDVAGYNINRKNWFNGINMPTIAVKNVDGTIKAIRE-FSYNDYYNN 365 + Y + + +N + P + + G + + + +D + Sbjct: 400 AVAATGAYCYSLSSRYNMVGRPAVVAVH-AGNARLVLRRETVDDLLSL 446 >1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Length = 434 Score = 99.7 bits (247), Expect = 9e-22 Identities = 66/397 (16%), Positives = 132/397 (33%), Gaps = 35/397 (8%) Query: 4 TPYYLIDKQKLLNNLDT------ALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTS 57 TP Y++ ++++ N + + A K A + L + G Sbjct: 30 TPLYVMSEEQIKINYNRYIEAFKRWEEETGKEFIVAYAYKANANLAITRLLAKLGCGADV 89 Query: 58 SSLYEVMLGHEKF---GGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKL 114 S E+ + N K+ I + +N +++S+L + A++L Sbjct: 90 VSGGELYIAKLSNVPSKKIVFNGNCKTKEEIIMGIEANIRAFNVDSISELILINETAKEL 149 Query: 115 HKKIGLRINPSVSYS--------------KFILADPNRPFSRLGEKCKDKIESEIKNVNG 160 + + + + + KF L + + + + + V+ Sbjct: 150 GETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVNVVGVHC 209 Query: 161 LMFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGI---------HFTDKDYPV 211 + + F+ + + + E +IE ++LGGG+ T KD Sbjct: 210 HIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQIPTQKDLAD 269 Query: 212 KDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNL-VIVDSSVEAHVP 270 LK + + LEPG ++V L V I E V++D+ + + Sbjct: 270 AIINTMLKYKDKVEMPNLILEPGRSLVATAGYLLGKVHHIKETPVTKWVMIDAGMNDMMR 329 Query: 271 DYLLYQESATIY--PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNI 328 + I + G C + D+FG V++GD ++ DV Y I Sbjct: 330 PAMYEAYHHIINCKVKNEKEVVSIAGGLCESSDVFGRDRELDKVEVGDVLAIFDVGAYGI 389 Query: 329 NRKNWFNGINMPTIAVKNVDGTIKAIREFSYNDYYNN 365 + N +N P + + + G +Y D Sbjct: 390 SMANNYNARGRPRMVLTSKKGVFLIRERETYADLIAK 426 >2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Length = 471 Score = 94.2 bits (233), Expect = 5e-20 Identities = 69/392 (17%), Positives = 124/392 (31%), Gaps = 35/392 (8%) Query: 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYE 62 K +Y+ D +L +++ V A+KC + + TL G +S E Sbjct: 47 KDAFYVADLGDILKKHLR--WLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTE 104 Query: 63 VMLGHE-KFGGETHAYNVAYKD-CEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGL 120 + L E Y K +I +N ++ S++ K K+ L Sbjct: 105 IQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMM-TFDSEVELMKVARAHPKAKLVL 163 Query: 121 RINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLK 180 RI S + L+ R ++ + +V G+ FH F + Sbjct: 164 RIATDDSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAIS 223 Query: 181 NIEKEF------GHFITQIEWISLGGGIHFTDKD---YPVKDFCQRLKEFSEKYSVQIYL 231 + F G + ++ G K F V+I Sbjct: 224 DARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIA 283 Query: 232 EPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESAT----------- 280 EPG V + TL ++ +K D E+ ++ Y Sbjct: 284 EPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDH 343 Query: 281 ----------IYPNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINR 330 P+ Y++ + G +C D E + +GD + FE++ Y + Sbjct: 344 AHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAA 403 Query: 331 KNWFNGINMPTIAVKNVDGTIKAIREFSYNDY 362 + FNG PTI + +++F D+ Sbjct: 404 ASTFNGFQRPTIYYVMSGPAWQLMQQFQNPDF 435 >3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Length = 448 Score = 88.0 bits (217), Expect = 3e-18 Identities = 56/385 (14%), Positives = 115/385 (29%), Gaps = 35/385 (9%) Query: 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYE 62 K +++ D K++ + A +K +KC + + + L G SS E Sbjct: 37 KNAFFVGDLGKIVKKHSQ--WQTVVAQIKPFYTVKCNSTPAVLEILAALGTGFACSSKNE 94 Query: 63 VMLGHE-KFGGETHAYNVAYKDCEI--DAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIG 119 + L E E + K A + + + +L K + K+ Sbjct: 95 MALVQELGVSPENIIFTSPCKQVSQIKYAAKVGVNIMTCDNEIELKKIARNHP--NAKVL 152 Query: 120 LRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAML 179 L I + + + + + G+ FH + K + + L Sbjct: 153 LHIATEDNIGGEDGNMKFGTTLKNCRHLLECAKELDVQIIGVKFHVSSACKEYQVYVHAL 212 Query: 180 KNIE------KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKEFSEKYSVQIYLEP 233 + EFG + ++ G ++ F E +QI EP Sbjct: 213 SDARCVFDMAGEFGFTMNMLDIGGGFTGTEIQLEEVNHVISPLLDIYFPEGSGIQIISEP 272 Query: 234 GEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGP------ 287 G V++ TL ++ + +Y + +Y + Sbjct: 273 GSYYVSSAFTLAVNIIAKKVVENDKFSSGVEKNGSDEPAFVYYMNDGVYGSFASKLSEDL 332 Query: 288 ----------------YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRK 331 +T+ + G SC D E + +GD + F+++ + + Sbjct: 333 NTIPEVHKKYKEDEPLFTSSLWGPSCDELDQIVESCLLPELNVGDWLIFDNMGADSFHEP 392 Query: 332 NWFNGINMPTIAVKNVDGTIKAIRE 356 + FN P I +++ Sbjct: 393 SAFNDFQRPAIYFMMSFSDWYEMQD 417 >7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Length = 424 Score = 84.9 bits (209), Expect = 2e-17 Identities = 66/386 (17%), Positives = 122/386 (31%), Gaps = 35/386 (9%) Query: 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYE 62 K +Y+ D +L +++ V A+KC + + TL G +S E Sbjct: 37 KDAFYVADLGDILKKHLR--WLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTE 94 Query: 63 VMLGHE-KFGGETHAYNVAYK-DCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGL 120 + L E Y K +I SN ++ ++ K K+ L Sbjct: 95 IQLVQGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDS-EIELMKVARAHPKAKLVL 153 Query: 121 RINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLK 180 RI S + L+ + ++ + +V G+ FH F + Sbjct: 154 RIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVS 213 Query: 181 N----IEKEFGHFITQIEWISLGGGIHFTDKDYPVKDF-----CQRLKEFSEKYSVQIYL 231 + + + GG D ++ K F V+I Sbjct: 214 DARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIA 273 Query: 232 EPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESA-------TIY-- 282 EPG V + TL ++ K D E++ ++ Y +Y Sbjct: 274 EPGRYYVASAFTLAVNIIAKKTVWKEQPGSDDEDESNEQTFMYYVNDGVYGSFNCILYDH 333 Query: 283 ------------PNTGPYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINR 330 P+ Y++ + G +C D E + +GD + FE++ Y + Sbjct: 334 AHVKALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAA 393 Query: 331 KNWFNGINMPTIAVKNVDGTIKAIRE 356 + FNG P I + +++ Sbjct: 394 ASTFNGFQRPNIYYVMSRPMWQLMKQ 419 >2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A* Length = 419 Score = 82.7 bits (203), Expect = 1e-16 Identities = 62/366 (16%), Positives = 117/366 (31%), Gaps = 17/366 (4%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63 P L+D + V L ALK + TL ++ EV Sbjct: 55 APLLLLDCDVIRQQY--RALKNALPNVTLHYALKPLPHPVVVRTLLAEGASFDLATTGEV 112 Query: 64 MLGHE-KFGGETHAYNVAYKD--CEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGL 120 L + + K DA+ C+ + + +++L KFK + + L Sbjct: 113 ELVASEGVPADLTIHTHPIKRDADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRL 172 Query: 121 RINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCEN--KSFLCFSAM 178 S +++ P L K + + N K Sbjct: 173 SFRNSEAFADLSKKFGCSPEQALVIIETAKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTC 232 Query: 179 LKNIEKEFGHFITQIEWISLGGG--IHFTDKDYPVKDFCQRLKEFSEKY--SVQIYLEPG 234 +E+ + + + +GGG +++T + P+ FC + E +V + EPG Sbjct: 233 RHVMEQVVERGLPALSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPETVHVLAEPG 292 Query: 235 EAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQES----ATIYPNTGPYTA 290 I T +V+ +E + L++ ++ TI + Sbjct: 293 RFICAPAVTSVASVMGQAEREGQIWYYLDDGIYGSFSGLMFDDARYPLTTIKQGGELIPS 352 Query: 291 MVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMP-TIAVKN-VD 348 ++ G +C + D+ E + GD + + Y FN TIA+ V Sbjct: 353 VLSGPTCDSVDVIAENILLPKLNNGDLVIGRTMGAYTSATATDFNFFKRAQTIALNEFVA 412 Query: 349 GTIKAI 354 + + I Sbjct: 413 SSERMI 418 >2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Length = 428 Score = 81.3 bits (199), Expect = 3e-16 Identities = 49/402 (12%), Positives = 110/402 (27%), Gaps = 43/402 (10%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYEV 63 TP+YL D + + L R N ++ L+LK + Q+ G +S E+ Sbjct: 17 TPFYLYDGDFIEAHYR-QLRSRTNPAIQFYLSLKANNNIHLAKLFRQWGLGVEVASAGEL 75 Query: 64 MLGHEKFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLRIN 123 L G + + + + I+ +++ + ++L +K Sbjct: 76 ALAR-HAGFSAENIIFSGPGKKRSELEIAVQSGIYCIIAESVEELFYIEELAEKENKTAR 134 Query: 124 PSVSY---------------SKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCE 168 ++ + + + ++ ++ N Sbjct: 135 VAIRINPDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSLQFTKFIGIHVYTGTQNLN 194 Query: 169 NKSFLCFSAMLKNIEKEFGHFI-TQIEWISLGGGIHFTDKDYPVKDFCQRLKE------- 220 S + ++ + E I+LGGG + ++ Sbjct: 195 TDSIIESMKYTVDLGRNIYERYGIVCECINLGGGFGVPYFSHEKALDIGKITRTVSDYVQ 254 Query: 221 ---FSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSS------VEAHVPD 271 + +E G ++ T VL + + ++ Sbjct: 255 EARDTRFPQTTFIIESGRYLLAQAAVYVTEVLYRKASKGEVFVIVDGGMHHHAASTFRGR 314 Query: 272 YLLYQESATIYPNTGP------YTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAG 325 + P + G C D G+ + GD + + Sbjct: 315 SMRSNYPMEYIPVREDSGRRELEKVTIAGPLCTPEDCLGKDVHVPALYPGDLVCVLNSGA 374 Query: 326 YNIN-RKNWFNGINMPTIAVKNVDGTIKAIRE-FSYNDYYNN 365 Y ++ F G P +K +G+ + IR + +D Sbjct: 375 YGLSFSPVHFLGHPTPIEILKR-NGSYELIRRKGTADDIVAT 415 >2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Length = 372 Score = 70.0 bits (170), Expect = 7e-13 Identities = 51/356 (14%), Positives = 105/356 (29%), Gaps = 18/356 (5%) Query: 3 KTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQYMDGTTSSSLYE 62 +Y+ + + + +D + V A+KC + T+ +S E Sbjct: 16 TKSFYVSSPKIVEDLIDQ--WTILFPRVTPHYAVKCNNDEVLLKTMCDKNVNFDCASSSE 73 Query: 63 VMLGHE-KFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKKIGLR 121 + + + K + + I S K + K+ LR Sbjct: 74 IKKVIQIGVSPSRIIFAHTMKTIDDLIFAKDQGVDIATFDSSFELDKIHTYHPNCKMILR 133 Query: 122 INPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAML-- 179 I + L + + + V G+ FH +++ + + Sbjct: 134 IRCDDPNATVQLGNKFGANEDEIRHLLEYAKQLDIEVIGISFHVGSGSRNPEAYYRAIKS 193 Query: 180 -KNIEKEFGHFITQIEWISLGGGIH-----FTDKDYPVKDFCQRLKEFSEKYSVQIYLEP 233 K E + + +GGG+H Y +K+F + +V I EP Sbjct: 194 SKEAFNEAISVGHKPYILDIGGGLHADIDEGELSTYMSDYINDAIKDFFPEDTVTIVAEP 253 Query: 234 GEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYP-------NTG 286 G + + L T V+ + +++++S + Sbjct: 254 GRFFAEHYSVLATQVIGKRVRDGLYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVPDDEE 313 Query: 287 PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNINRKNWFNGINMPTI 342 +++ G +C D+ + IGD + F Y FNG + Sbjct: 314 YVPSVLYGCTCDGVDVINHNVALPELHIGDWVYFPSWGAYTNVLTTSFNGFGEYDV 369 >3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.10A {Escherichia coli} Length = 666 Score = 52.7 bits (126), Expect = 1e-07 Identities = 36/299 (12%), Positives = 95/299 (31%), Gaps = 43/299 (14%) Query: 35 ALKCFAAWGMFDTLNQY--MDGTTSSSLYEVMLGHEKFG-GETHAYNVAYKDCE------ 85 +K + ++L G + S E+M G + YKD E Sbjct: 125 PIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLAHAGMTRSVIVCNGYKDREYIRLAL 184 Query: 86 IDAVLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSV---------SYSKFILA 134 I + + ++ +S++ D+A++L+ +G+R + K Sbjct: 185 IGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFG 244 Query: 135 DPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFIT--- 191 +L E ++ + ++ L FH + + + ++ + + Sbjct: 245 LAATQVLQLVETLREA--GRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGV 302 Query: 192 QIEWISLGGGIH--FTDKDYP------------VKDFCQRLKEFSEKYSV---QIYLEPG 234 I+ +GGG+ + + + + E+ + + E G Sbjct: 303 NIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESG 362 Query: 235 EAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVC 293 A+ + T L + ++ + N + + +A +++ ++ + Sbjct: 363 RAVTAHHTVLVSNIIGVERNEYTVPTAPAE-DAPRALQSMWETWQEMHEPGTRRSLREW 420 >3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Length = 619 Score = 46.6 bits (110), Expect = 9e-06 Identities = 48/310 (15%), Positives = 91/310 (29%), Gaps = 48/310 (15%) Query: 2 IKTPYYLIDKQKLLNNLDTA--------LYIRKNAGVKLLLALKCFAAWGMFDTL----N 49 K P L + ++ G + LK G L Sbjct: 43 YKGPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK 102 Query: 50 QYMDGTTSSSLYEVMLGHE-KFGGETHAYNVAYKDCEID-----AVLSNCDTIIFNTVSQ 103 Y G + S E++L G N I+ A + + T+ +++ Sbjct: 103 DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGLNE 162 Query: 104 LNKFKDKAQKLHKK---IGLRINPSVSY------SKFILADPNRPFSRLGEKCKDKIESE 154 L D A++ K IGLR+ + S I + + L E E++ Sbjct: 163 LEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENK 222 Query: 155 -IKNVNGLMFHNNCENKSFLCFSAMLKN----IEKEFGHFITQIEWISLGGG--IHFTDK 207 ++ + FH + L + ++ I+LGGG + ++ Sbjct: 223 LLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQF 282 Query: 208 DYP-------------VKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISEN 254 V + + E + I++E G + N L VL++ Sbjct: 283 KNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQ 342 Query: 255 -IKNLVIVDS 263 ++ Sbjct: 343 EYAENKLILK 352 >3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Length = 648 Score = 46.2 bits (109), Expect = 1e-05 Identities = 27/236 (11%), Positives = 72/236 (30%), Gaps = 34/236 (14%) Query: 89 VLSNCDTIIFNTVSQLNKFKDKAQKLHKK--IGLRINPSVS-YSKFILADPNRPFSRLGE 145 L + I+ +S+L+ +A+ L +G+RI + K+ + S+ G Sbjct: 171 KLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRLASQGAGKWQAS--GGEKSKFGL 228 Query: 146 KCKDKIE--------SEIKNVNGLMFHNNCENKSFLCFSAMLKNIEKEFGHFITQ---IE 194 + +++ + + FH + + + + + T I Sbjct: 229 SASQVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRTLGANIT 288 Query: 195 WISLGGGIH--------------FTDKDYPVKDFCQRLKEFSEKYSV---QIYLEPGEAI 237 + +GGG+ ++ + + + Y I E G ++ Sbjct: 289 YFDVGGGLAIDYDGTRSQSSNSMNYGLVEYARNIVNTVGDVCKDYKQPMPVIISESGRSL 348 Query: 238 VTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIYPNTGPYTAMVC 293 + L + V+ V + + +++ ++ T + Sbjct: 349 TAHHAVLISNVIGTETYKPETVTEPEEDFPLLLNN-MWRSWLNLHNGTDARALIEI 403 >3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Length = 376 Score = 35.3 bits (80), Expect = 0.023 Identities = 35/209 (16%), Positives = 63/209 (30%), Gaps = 9/209 (4%) Query: 4 TPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQY-MDGTTSSSLYE 62 TPY LID+ KL +N++ ++ G L LK L T S+L E Sbjct: 14 TPYLLIDEAKLKSNINYLKQRVESLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAE 73 Query: 63 VMLGHEK-FGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVS---QLNKFKDKAQKLHKKI 118 + + +A +A + A L + + Q D A + + Sbjct: 74 AEAYAKAGYTDLLYAVGIAPAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDF 133 Query: 119 GLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNCEN--KSFLC-F 175 + I + + P+ K + + + G + N E K+F Sbjct: 134 SVFIEIDSDDHRGGI-KPSDSKLLTIAKTLGEHFTGLMTHAGGSYACNTEQGLKNFAKQE 192 Query: 176 SAMLKNIEKEFGHFITQIEWISLGGGIHF 204 ++ S+G Sbjct: 193 CDAVRIARNNLETAGIHCAITSVGSTPTA 221 >3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Length = 426 Score = 31.8 bits (71), Expect = 0.26 Identities = 42/356 (11%), Positives = 98/356 (27%), Gaps = 42/356 (11%) Query: 2 IKTPYYLIDKQKLLNNLDTALYIRKNAGVKLLLALKCFAAWGMFDTLNQY-MDGTTSSSL 60 + P ++ ++ +NL GVKL K A +F + G T ++ Sbjct: 44 VSLPAAVLYADRVEHNLKWMQAFVAEYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATA 103 Query: 61 YEV-MLGHEKFGGETHAYNVAYKDCEIDAVLSNCDTIIFNTVS-----QLNKFKDKAQKL 114 ++V H A + + + D + + + + + Sbjct: 104 HQVRAAYHGGVSRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSV 163 Query: 115 HKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEIKNVNGLMFHNNC-----EN 169 +K++ + + V + + D + + L + + G+ + E Sbjct: 164 NKQLQVLLELGVPGGRTGVRDAAQRNAVL---EAITRYPDTLKLAGVELYEGVLKEEHEV 220 Query: 170 KSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFT--------------------DKDY 209 + FL + + E F +S G + Y Sbjct: 221 REFLQSAVAVTRELVEQERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVLRPGCY 280 Query: 210 PVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHV 269 D K ++ ++ + + L V S + I+ Sbjct: 281 LTHDVGIYRKAQTDIFARNPVAKKMGEGLLPALQLWAYV--QSIPEPDRAIIGLGKRDSA 338 Query: 270 PDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHF-----EKPVKIGDRISF 320 D + + + P + + + + +K+GD I+F Sbjct: 339 FDAGMPEPARHYRPGNEAPRDIAASEGWEIFGLMDQHAYLRIPAGADLKVGDMIAF 394 >1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A Length = 780 Score = 29.9 bits (66), Expect = 0.82 Identities = 11/67 (16%), Positives = 22/67 (32%) Query: 223 EKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAHVPDYLLYQESATIY 282 EKY + + + + T T+ DI + L I V + ++ Sbjct: 4 EKYDLTLDFDIQKRTFNGTETITADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQTVRAP 63 Query: 283 PNTGPYT 289 ++ P Sbjct: 64 GDSQPQK 70 >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} Length = 210 Score = 29.6 bits (66), Expect = 1.0 Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 13/133 (9%) Query: 202 IHFTDKDYPVKDFCQRLKEFSEKYSVQIYL--EPGEAIVTNTTTLNTTVLDISENIKNLV 259 +H + P + L EKY +I N ++ + SE Sbjct: 30 LHLRKPETPAMYSERLLTLIPEKYHRRIVTHEHFYLKEEFNLMGIHLNARNPSEPHDYAG 89 Query: 260 IVDSSV--------EAHVPDYLLYQESATIYPNTGPYTAMVCGRSCLAGDIFGEFHFEKP 311 V S H DY+ S + L + + Sbjct: 90 HVSCSCHSVEEVKNRKHFYDYVFM--SPIYDSISKVNYYSTYTAEELR-EAQKAKIIDSK 146 Query: 312 VKIGDRISFEDVA 324 V I+ +++ Sbjct: 147 VMALGGINEDNLL 159 >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 Length = 433 Score = 28.5 bits (63), Expect = 2.1 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 1/59 (1%) Query: 162 MFHNNCENKSFLCFSAMLKNIEKEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQRLKE 220 K F LK K+ + + L I F ++ V D C +LKE Sbjct: 332 EKLCENAEKLGGPFLENLKRELKDSKI-VRDVRGKGLLCAIEFKNELVNVLDICLKLKE 389 >3kh8_A MAOC-like dehydratase; hot DOG domain, lyase; 2.00A {Phytophthora capsici} Length = 332 Score = 28.2 bits (62), Expect = 2.9 Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 4/41 (9%) Query: 285 TGPYTAMVCGRSCLAGDI--FGEFH--FEKPVKIGDRISFE 321 + + + GD+ F F P G+ I Sbjct: 254 SMGVASRALFKQFCGGDVARFKSIRVRFSSPCFPGETIQTR 294 >2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} Length = 234 Score = 27.6 bits (61), Expect = 4.8 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 37/189 (19%) Query: 96 IIFNTVSQLNKFKDKAQKLHKKIGLRINPSVSYSKFILADPNRPFSRLGEKCKDKIESEI 155 + + +L +FK + K + + S +++F + D + F L E+ + + Sbjct: 66 ALLDDSKELQRFKAVSAKSKEDL-----VSQGFTEFTIEDFHNTFMDLIEQVEKQT---- 116 Query: 156 KNVNGLMFHNNCENKSFLCF-------SAMLKNIEKEFGHFITQIEWISLGGGIHFTDKD 208 +V L+ N ++ S S L+ K F HFI Sbjct: 117 -SVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG---------------G 160 Query: 209 YPVKDFCQRLKEFSEKYSVQIYLEPGEAIVTNTTTLNTTVLDISENIKNLVIVDSSVEAH 268 VK+FCQ+ E K S I++ + +++ V + E Sbjct: 161 RTVKEFCQQEVEPMCKESDHIHI----IALAQALSVSIQVEYMDRGEGGTTNPHIFPEGS 216 Query: 269 VPD-YLLYQ 276 P YLLY+ Sbjct: 217 EPKVYLLYR 225 >1pc6_A Protein NINB; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.51A {Enterobacteria phage lambda} SCOP: d.262.1.1 Length = 146 Score = 27.5 bits (61), Expect = 5.3 Identities = 6/34 (17%), Positives = 14/34 (41%) Query: 184 KEFGHFITQIEWISLGGGIHFTDKDYPVKDFCQR 217 EF + I+ G+ ++D+ ++ R Sbjct: 107 GEFAELLELIQAFGTERGVKWSDEARLALEWKAR 140 >1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A Length = 99 Score = 26.7 bits (59), Expect = 9.1 Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 3/55 (5%) Query: 277 ESATIYPNTG---PYTAMVCGRSCLAGDIFGEFHFEKPVKIGDRISFEDVAGYNI 328 S + P+T P V D GE V GD + + G I Sbjct: 24 ASGLVIPDTAKEKPQEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIYSKYGGTEI 78 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.137 0.409 Gapped Lambda K H 0.267 0.0467 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,226,453 Number of extensions: 148905 Number of successful extensions: 491 Number of sequences better than 10.0: 1 Number of HSP's gapped: 462 Number of HSP's successfully gapped: 41 Length of query: 367 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 273 Effective length of database: 3,414,294 Effective search space: 932102262 Effective search space used: 932102262 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.4 bits)