HHsearch alignment for GI: 254780742 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=97.71 E-value=0.0002 Score=48.59 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=59.3
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 319998-4987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r 3 KNVLII-GAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN 81 (419)
Q Consensus 3 k~ilv~-GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~ 81 (419)
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~Dk----LT-YAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~ 74 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDK----LT-YAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQ 74 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCC-CEEEEEEC----CC-CCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCC
T ss_conf 93799657515778999999960997-52899752----33-15778788864069971588545547999999997448
Q ss_pred CCEEEECCC
Q ss_conf 729997376
Q gi|254780742|r 82 SQIIINVGS 90 (419)
Q Consensus 82 ~dvVin~~~ 90 (419)
T Consensus 75 ~D~VvhfAA 83 (340)
T COG1088 75 PDAVVHFAA 83 (340)
T ss_pred CCEEEEECH
T ss_conf 875998110