HHsearch alignment for GI: 254780742 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.74 E-value=0.018 Score=35.44 Aligned_cols=91 Identities=8% Similarity=0.063 Sum_probs=51.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEE-CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHC
Q ss_conf 7319998498779999999996089872599963-999999999987343024555557308994378989999999753
Q gi|254780742|r 2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIAS-RTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKT 80 (419)
Q Consensus 2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~-r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~ 80 (419)
T Consensus 14 gk~v~V~GlG~sG~s~a~~L~~~G~---~v~~~D~~~~~~~~~~~~~l~~~-------g~~~~~g--~~~~~---~~~-- 76 (481)
T PRK01438 14 GLRVVVAGLGVSGFPAADALHELGA---SVTVVADGDDDRSRERAALLEVL-------GATVRLG--DGETT---LPE-- 76 (481)
T ss_pred CCEEEEEEECHHHHHHHHHHHHCCC---EEEEEECCCCCCCHHHHHHHHHC-------CCEEEEC--CCHHH---HHC--
T ss_conf 9989999575889999999996799---89999799874486899988854-------9889968--87566---624--
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 97299973761003278999986288689
Q gi|254780742|r 81 NSQIIINVGSSFLNMSVLRACIDSNVAYI 109 (419)
Q Consensus 81 ~~dvVin~~~p~~~~~v~~a~i~~g~hyv 109 (419)
T Consensus 77 ~~d~vV~SPGI~~~~p~~~~a~~~gi~i~ 105 (481)
T PRK01438 77 GTELVVTSPGWRPTHPLLAAAAEAGIPVW 105 (481)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCEE
T ss_conf 89999989978998999999998699386