HHsearch alignment for GI: 254780742 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=98.32 E-value=8.6e-06 Score=57.87 Aligned_cols=93 Identities=17% Similarity=0.303 Sum_probs=69.1
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCC
Q ss_conf 1999849-877999999999608987259996399999999998734302455555730899437898999999975397
Q gi|254780742|r 4 NVLIIGA-GGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNS 82 (419)
Q Consensus 4 ~ilv~Ga-G~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~ 82 (419)
T Consensus 2 riLVTGgtGfiG~~l~~~L~~~G~---~V~~l~r~~~~~~~~~-----------~~~~~~~~gDl~d~~~~~~~~~--~~ 65 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLERGE---EVRVLVRPTSDRRNLE-----------GLDVEIVEGDLRDPASLRKALA--GC 65 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC---EEEEEECCCCCHHHHC-----------CCCCEEEEEECCCHHHHHHHHH--CC
T ss_conf 499986777999999999997849---8999989998655652-----------1797799820799999999971--78
Q ss_pred CEEEECCCCC----------CC------HHHHHHHHHCCCC-EEEEC
Q ss_conf 2999737610----------03------2789999862886-89603
Q gi|254780742|r 83 QIIINVGSSF----------LN------MSVLRACIDSNVA-YIDTA 112 (419)
Q Consensus 83 dvVin~~~p~----------~~------~~v~~a~i~~g~h-yvD~s 112 (419)
T Consensus 66 d~ViH~Aa~~~~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~S 112 (328)
T TIGR03466 66 RALFHVAADYRLWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTS 112 (328)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 58976134234467998999999999999999999972987431563