HHsearch alignment for GI: 254780742 and conserved domain: cd01065

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.90  E-value=2e-08  Score=75.71  Aligned_cols=127  Identities=27%  Similarity=0.338  Sum_probs=90.1

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf             73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r    2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN   81 (419)
Q Consensus         2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~   81 (419)
T Consensus        19 ~k~vlIlGaGGaarai~~aL~~~g~--~~I~i~nR~~~r~~~l~~~~~~~~~-------~~~---~~~---~~~~~~--~   81 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGA--AKIVIVNRTLEKAKALAERFGELGI-------AIA---YLD---LEELLA--E   81 (155)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCC-------CEE---ECC---HHHHHC--C
T ss_conf             9999998675899999999997199--8228860899999999998501366-------401---045---344315--6


Q ss_pred             CCEEEECCCCCC----CHHHHHHHHHCCCCEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf             729997376100----3278999986288689603664200001442000035775108888518869953750111488
Q gi|254780742|r   82 SQIIINVGSSFL----NMSVLRACIDSNVAYIDTAIHESPLKICESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVN  157 (419)
Q Consensus        82 ~dvVin~~~p~~----~~~v~~a~i~~g~hyvD~s~~~~~~~~~~~~~~~~~~~~~l~~~a~~ag~~~i~~~G~~PGl~~  157 (419)
T Consensus        82 ~dliIN~tp~G~~~~~~~p~~~~~~~~~~~~~D~iY~P~~T--------------~ll~~a~~~g~~~i~Gl-------~  140 (155)
T cd01065          82 ADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET--------------PLLKEARALGAKTIDGL-------E  140 (155)
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC--------------HHHHHHHHCCCEEECCH-------H
T ss_conf             88798767787778776767887759986898653178788--------------99999999839587739-------9


Q ss_pred             HHHHHHHHH
Q ss_conf             999999997
Q gi|254780742|r  158 AFARLAQDE  166 (419)
Q Consensus       158 lla~~~~~~  166 (419)
T Consensus       141 Mli~Qa~~~  149 (155)
T cd01065         141 MLVYQAAEA  149 (155)
T ss_pred             HHHHHHHHH
T ss_conf             999999999