HHsearch alignment for GI: 254780742 and conserved domain: cd01065
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.90 E-value=2e-08 Score=75.71 Aligned_cols=127 Identities=27% Similarity=0.338 Sum_probs=90.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r 2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN 81 (419)
Q Consensus 2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~ 81 (419)
T Consensus 19 ~k~vlIlGaGGaarai~~aL~~~g~--~~I~i~nR~~~r~~~l~~~~~~~~~-------~~~---~~~---~~~~~~--~ 81 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGA--AKIVIVNRTLEKAKALAERFGELGI-------AIA---YLD---LEELLA--E 81 (155)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHCCC-------CEE---ECC---HHHHHC--C
T ss_conf 9999998675899999999997199--8228860899999999998501366-------401---045---344315--6
Q ss_pred CCEEEECCCCCC----CHHHHHHHHHCCCCEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHH
Q ss_conf 729997376100----3278999986288689603664200001442000035775108888518869953750111488
Q gi|254780742|r 82 SQIIINVGSSFL----NMSVLRACIDSNVAYIDTAIHESPLKICESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVN 157 (419)
Q Consensus 82 ~dvVin~~~p~~----~~~v~~a~i~~g~hyvD~s~~~~~~~~~~~~~~~~~~~~~l~~~a~~ag~~~i~~~G~~PGl~~ 157 (419)
T Consensus 82 ~dliIN~tp~G~~~~~~~p~~~~~~~~~~~~~D~iY~P~~T--------------~ll~~a~~~g~~~i~Gl-------~ 140 (155)
T cd01065 82 ADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET--------------PLLKEARALGAKTIDGL-------E 140 (155)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC--------------HHHHHHHHCCCEEECCH-------H
T ss_conf 88798767787778776767887759986898653178788--------------99999999839587739-------9
Q ss_pred HHHHHHHHH
Q ss_conf 999999997
Q gi|254780742|r 158 AFARLAQDE 166 (419)
Q Consensus 158 lla~~~~~~ 166 (419)
T Consensus 141 Mli~Qa~~~ 149 (155)
T cd01065 141 MLVYQAAEA 149 (155)
T ss_pred HHHHHHHHH
T ss_conf 999999999