HHsearch alignment for GI: 254780742 and conserved domain: cd05293
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.72 E-value=0.00015 Score=49.46 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=56.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCC
Q ss_conf 73199984987799999999960898725999639999999999873430245555573089943789899999997539
Q gi|254780742|r 2 KKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTN 81 (419)
Q Consensus 2 ~k~ilv~GaG~vG~~~~~~L~~~~~~~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~ 81 (419)
T Consensus 3 r~Kv~IIGaG~VG~~~A~~l~~~~l-~~el~L~Di~~~~a~g~a~Dl~h~~~~~~~~--~v--~~~~d~~~~----~--~ 71 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL-ADELVLVDVVEDKLKGEAMDLQHGSAFLKNP--KI--EADKDYSVT----A--N 71 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHHHCCCCCCCC--EE--EECCCHHHH----C--C
T ss_conf 8869998978889999999996699-8879999388983326888866040127985--59--937999996----8--9
Q ss_pred CCEEEECCCCC
Q ss_conf 72999737610
Q gi|254780742|r 82 SQIIINVGSSF 92 (419)
Q Consensus 82 ~dvVin~~~p~ 92 (419)
T Consensus 72 aDvVVitAG~~ 82 (312)
T cd05293 72 SKVVIVTAGAR 82 (312)
T ss_pred CCEEEECCCCC
T ss_conf 99999889999