HHsearch alignment for GI: 254780742 and conserved domain: pfam03447
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=98.00 E-value=4.2e-05 Score=53.18 Aligned_cols=113 Identities=12% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCHHHHHHHHHHHHCCCC--CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEE
Q ss_conf 4987799999999960898--72599963999999999987343024555557308994378989999999753972999
Q gi|254780742|r 9 GAGGVAHVVAHKCAQNNDI--LGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIHQVDALNIKAVVELIKKTNSQIII 86 (419)
Q Consensus 9 GaG~vG~~~~~~L~~~~~~--~~~i~va~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~~~dvVi 86 (419)
T Consensus 1 G~G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~~~~----------~~~~~~----~~d~~---~ll~~~~iDvVV 63 (116)
T pfam03447 1 GCGAIGSGLLELLLRQQEEIPLELVAVADRDLLSKARAAL----------LGDEPV----TLDLD---DLVADPRPDVVV 63 (116)
T ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCC----------CCCCEE----ECCHH---HHHCCCCCCEEE
T ss_conf 9870289999999949203567999998478343232124----------666715----77999---996188998999
Q ss_pred ECCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 7376100327899998628868960366420000144200003577510888851886995
Q gi|254780742|r 87 NVGSSFLNMSVLRACIDSNVAYIDTAIHESPLKICESPPWYNNYEWSLLDECRTKSITAIL 147 (419)
Q Consensus 87 n~~~p~~~~~v~~a~i~~g~hyvD~s~~~~~~~~~~~~~~~~~~~~~l~~~a~~ag~~~i~ 147 (419)
T Consensus 64 E~~g~~~~~~~~~~aL~~GkhVVTaNK~~--lA-------~~~~~~eL~~~A~~~g~~~~f 115 (116)
T pfam03447 64 ECASSEAVAEYVLKALKAGKHVVTASKGA--LA-------DLALRERLREAAEASGVRVYF 115 (116)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEECHHH--HC-------CHHHHHHHHHHHHHCCCEEEE
T ss_conf 88994899999999998799899907889--67-------857999999999983996972