BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780742|ref|YP_003065155.1| hypothetical protein
CLIBASIA_03145 [Candidatus Liberibacter asiaticus str. psy62]
(419 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780742|ref|YP_003065155.1| hypothetical protein CLIBASIA_03145 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 419
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/419 (100%), Positives = 419/419 (100%)
Query: 1 MKKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKL 60
MKKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKL
Sbjct: 1 MKKNVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKL 60
Query: 61 AIHQVDALNIKAVVELIKKTNSQIIINVGSSFLNMSVLRACIDSNVAYIDTAIHESPLKI 120
AIHQVDALNIKAVVELIKKTNSQIIINVGSSFLNMSVLRACIDSNVAYIDTAIHESPLKI
Sbjct: 61 AIHQVDALNIKAVVELIKKTNSQIIINVGSSFLNMSVLRACIDSNVAYIDTAIHESPLKI 120
Query: 121 CESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVNAFARLAQDEYFDKITDIDIIDVN 180
CESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVNAFARLAQDEYFDKITDIDIIDVN
Sbjct: 121 CESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVNAFARLAQDEYFDKITDIDIIDVN 180
Query: 181 AGKHDKYFATNFDAEINLREFTGVVYSWQKNQWCVNKMFEISRTYDLPTVGQHKVYLSGH 240
AGKHDKYFATNFDAEINLREFTGVVYSWQKNQWCVNKMFEISRTYDLPTVGQHKVYLSGH
Sbjct: 181 AGKHDKYFATNFDAEINLREFTGVVYSWQKNQWCVNKMFEISRTYDLPTVGQHKVYLSGH 240
Query: 241 DEIHSLFKNIQGADIRFWMGFSDHYINVFTVLKNIGLLSEQPIRTAENIEIAPLKIVKAV 300
DEIHSLFKNIQGADIRFWMGFSDHYINVFTVLKNIGLLSEQPIRTAENIEIAPLKIVKAV
Sbjct: 241 DEIHSLFKNIQGADIRFWMGFSDHYINVFTVLKNIGLLSEQPIRTAENIEIAPLKIVKAV 300
Query: 301 LPDPSSLAPNYQGKTCIGCLINGIYHGETREIFLYNICDHQNAYQEIASQGISYTAGTPP 360
LPDPSSLAPNYQGKTCIGCLINGIYHGETREIFLYNICDHQNAYQEIASQGISYTAGTPP
Sbjct: 301 LPDPSSLAPNYQGKTCIGCLINGIYHGETREIFLYNICDHQNAYQEIASQGISYTAGTPP 360
Query: 361 VATAILIAQGIWDIGKMVNIEELPPKPFLGTLQRMGLATSLRTNHKEHQLQFDEKLINQ 419
VATAILIAQGIWDIGKMVNIEELPPKPFLGTLQRMGLATSLRTNHKEHQLQFDEKLINQ
Sbjct: 361 VATAILIAQGIWDIGKMVNIEELPPKPFLGTLQRMGLATSLRTNHKEHQLQFDEKLINQ 419
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 30.8 bits (68), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 100 ACIDSNVAYIDTAI--HESPLKICESPPWYNNYEWSLLDECRTKSITAILGAGFDPGVVN 157
+ N Y +AI ++ PLK C PWY N ++ + + + A D +V
Sbjct: 119 VVVPQNEGYSISAISRYKIPLKFCTFIPWYTNSRHIVMPITSSVKVNSQTDARLDMMIVL 178
Query: 158 AFARLAQDEYFD-KITDIDI 176
+R + + +FD IT ID+
Sbjct: 179 DVSR-SMESFFDSSITKIDM 197
>gi|254780157|ref|YP_003064570.1| phosphoribosylaminoimidazole carboxylase catalytic subunit protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 165
Score = 28.5 bits (62), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 4 NVLIIGAGGVAHVVAHKCAQNNDILGDINIASRTLQKCSKIIDSIYKKKSLKIDGKLAIH 63
++I GAGG AH+ A + + + I S+TL ++ + + + G +AI
Sbjct: 61 KLIIAGAGGAAHLPGMIAAMTSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPV-GTMAIG 119
Query: 64 QVDALN 69
Q A+N
Sbjct: 120 QSGAIN 125
>gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 316
Score = 26.9 bits (58), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 211 NQWCV--NKMFEISRTYDLPTVGQHKVYLSGHDEIHSLFKNIQGADIRFWM 259
N WC N + SR + + G +KV +E+ SL ++GA +RF++
Sbjct: 226 NAWCFDENNTYNPSRGFSILN-GYNKVRKISENELQSLPTLLRGAALRFFL 275
>gi|254780532|ref|YP_003064945.1| aminodeoxychorismate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 325
Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 150 GFDPGVVNAFARLAQDEYFDKITDIDIIDVNAGKHDKYFATNF-DAEINLREF 201
G P ++ RL+ + + D+ V GK +F+TNF D IN++++
Sbjct: 264 GLPPTAISNPGRLSLEAVAKPLHTEDLYFVGDGKGGHFFSTNFKDHTINVQKW 316
>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 424
Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 5 VLIIGAGGVAHVVAHKCAQN 24
VL+IG+GG H +A K AQ+
Sbjct: 3 VLLIGSGGREHALAWKIAQS 22
>gi|254780298|ref|YP_003064711.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 118
Score = 23.9 bits (50), Expect = 4.9, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 257 FWMGFSDHYINVFTVLKNIGLLSEQPIRTAENIEIAPLKIVKAVL 301
FW+GF + I+ FT + + S +R A+ + + + I+ L
Sbjct: 45 FWLGFFFYAISFFTYIMVVAHFS---VRIAQTVVTSAIIIIATCL 86
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,239
Number of Sequences: 1233
Number of extensions: 11550
Number of successful extensions: 44
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 9
length of query: 419
length of database: 328,796
effective HSP length: 76
effective length of query: 343
effective length of database: 235,088
effective search space: 80635184
effective search space used: 80635184
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)