HHsearch alignment for GI: 254780743 and conserved domain: PRK10201
>PRK10201 G/U mismatch-specific DNA glycosylase; Provisional.
Probab=98.67 E-value=9.5e-07 Score=58.52 Aligned_cols=140 Identities=16% Similarity=0.228 Sum_probs=101.6
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC-------------CCCEEEEEECCC-CCCCCCCHHH
Q ss_conf 88884899857898300112001207004899999986098622-------------210000000122-5666677889
Q gi|254780743|r 105 TEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRT-------------QIHISMISPWHP-PGNRNLSNIE 170 (261)
Q Consensus 105 ~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~-------------~vyitn~vkcrP-p~nr~p~~~e 170 (261)
T Consensus 7 ~p~L~vlF~GiNPgl~Sa~~g~~fA~pgN-rFW~~L~~aGlt~r~l~p~ed~~Ll~~giG~TnlV~-R~T~~a~eL~~~E 84 (168)
T PRK10201 7 APGLRVVFCGINPGLSSAGTGFPFAHPAN-RFWKVIHQAGFTDRQLKPEEAQHLLDYRCGVTKLVD-RPTVQANEVSKQE 84 (168)
T ss_pred CCCCEEEEEEECCCHHHHHCCCCCCCCCC-CHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCEEECC-CCCCCHHHCCHHH
T ss_conf 89984899974978888853987789986-348999986898866686664138871977203456-7788936669999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHCCH-HHHHHHHH
Q ss_conf 99999999998632297679952559999984465331011065057664289737899970803883365-98999999
Q gi|254780743|r 171 MEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYP-LIKKNTWH 249 (261)
Q Consensus 171 i~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr~P-~~K~~aW~ 249 (261)
T Consensus 85 ~~~g~~~L~~ki~~~~P~~vaf~Gk~ay~~~fg~~~~~~----G~-Q~~~ig--~t~vwVlPspSGln~~~~~~l~~~yr 157 (168)
T PRK10201 85 LRSGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQW----GK-QTLTIG--STQIWVLPNPSGLNRVSLEKLVEAYR 157 (168)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCCCCC----CC-CCCCCC--CCEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 998899999999986997899977999999968998845----45-877778--81289931885002237999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780743|r 250 ALIT 253 (261)
Q Consensus 250 DL~~ 253 (261)
T Consensus 158 eL~~ 161 (168)
T PRK10201 158 ELDQ 161 (168)
T ss_pred HHHH
T ss_conf 9999