HHsearch alignment for GI: 254780743 and conserved domain: TIGR00584
>TIGR00584 mug mismatch-specific thymine-DNA glycosylate (mug); InterPro: IPR003310 G:U mismatches resulting from deamination of cytosine are the most common promutagenic lesions occurring in DNA. Uracil is removed in a base-excision repair pathway by uracil DNA-glycosylase (UDG), which excises uracil from both single- and double-stranded DNA. A biochemically distinct family of DNA repair enzymes which excises both uracil and thymine, but only from mispairs with guanine has been identified . Crystal structures of the mismatch-specific uracil DNA-glycosylase (MUG) from Escherichia coli, and of a DNA complex, reveal structural and functional homology to UDG despite low sequence identity .; GO: 0016798 hydrolase activity acting on glycosyl bonds, 0030983 mismatched DNA binding, 0006298 mismatch repair.
Probab=94.44 E-value=0.13 Score=29.29 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=82.4
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC----------------CCCEEEEEECCCC
Q ss_conf 722367888884899857898300112001207004899999986098622----------------2100000001225
Q gi|254780743|r 98 STICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRT----------------QIHISMISPWHPP 161 (261)
Q Consensus 98 ~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~----------------~vyitn~vkcrPp 161 (261)
T Consensus 136 ~~~PD~l~~N~~~vI~G~NPGl~~~~KGH~y~~P~N-~FWK~L~~S~L~EGn~~l~~l~D~~LPG~~G~G~TNl~~R~~~ 214 (347)
T TIGR00584 136 KTLPDILTFNLDIVIVGLNPGLMAAYKGHAYAGPGN-RFWKCLFKSKLSEGNVELNYLDDKDLPGKYGLGITNLVERTTS 214 (347)
T ss_pred CCCCHHHHCCCCEEEEECCHHHHHHHCCCCCCCCCH-HHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCC
T ss_conf 044123223763799812725675403555798842-5766654235430223543105756874346760000004888
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE-CHHHH
Q ss_conf 66667788999999999998632297679952-55999
Q gi|254780743|r 162 GNRNLSNIEMEICRPIIMRQIELISPKILLFI-GNKTK 198 (261)
Q Consensus 162 ~nr~p~~~ei~~c~p~L~~ei~li~Pk~ii~l-G~~a~ 198 (261)
T Consensus 215 ~~~DL~~~E~~~G~RIL~~K~~~Y~P~~~~F~sGK~Iy 252 (347)
T TIGR00584 215 GSKDLSKKEFREGARILVEKLKKYRPRVAVFISGKCIY 252 (347)
T ss_pred CCCCHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCEEE
T ss_conf 61100056532220567888753188057884483211