HHsearch results for GI: 254780743 and protein with PDBid: 1oe4_A
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=98.85 E-value=1.5e-08 Score=67.60 Aligned_cols=130 Identities=15% Similarity=0.284 Sum_probs=90.4
Q ss_pred CCCCCCEEEEECCCCCCC-CCCCCCCCC-----------------------------------CCHHHHHHHHHHCCCCC
Q ss_conf 888884899857898300-112001207-----------------------------------00489999998609862
Q gi|254780743|r 104 QTEGQDLMIIGYTPSDSD-NISGKPFSG-----------------------------------KTGNMLDKMLQSIEIMR 147 (261)
Q Consensus 104 G~~~a~imiVgeaPg~~E-d~~G~pF~G-----------------------------------~aG~lL~~mL~aigl~r 147 (261)
++...+++|+|..||... -.+|.||.. .||..|-.+++..--+.
T Consensus 50 ~~~~~~vl~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~i~~~v~~P~~~HPKRpi~G~~c~r~EvSg~rlW~l~~~~~g~p 129 (247)
T 1oe4_A 50 CKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQP 129 (247)
T ss_dssp CSSCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSSH
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 18999889983289877786418685887999878516674678854476776546576655653988999999883999
Q ss_pred ----CCCCEEEEEECCC--CC--CCCCC---HHH----HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHC
Q ss_conf ----2210000000122--56--66677---889----999999999986322976799525599999844653310110
Q gi|254780743|r 148 ----TQIHISMISPWHP--PG--NRNLS---NIE----MEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQN 212 (261)
Q Consensus 148 ----~~vyitn~vkcrP--p~--nr~p~---~~e----i~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~ 212 (261)
+++|+.|.++--+ .. |++|. ..| ...|-.+|.+.|++.+|++||.+|+.|.+.+-. .+ ..
T Consensus 130 e~ff~~~fv~N~CPL~f~~~~GkN~TP~~l~~~e~~~l~~~Cd~~L~~~v~~L~p~~VVgVG~~Ae~ra~~----al-~~ 204 (247)
T 1oe4_A 130 ETFFKHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTLLEICDEALCQAVRVLGVKLVIGVGRFSEQRARK----AL-MA 204 (247)
T ss_dssp HHHHTTEEEEESCCCEEECTTCCEECGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHH----HH-HH
T ss_pred HHHHHHHEEEECCCCEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH----HH-CC
T ss_conf 89865342572377333188998688000588899999999999999999861972899977899999999----86-04
Q ss_pred CCEEEEEECCCCCEEEEEEECHHHHHCCHHHHHHHHHH
Q ss_conf 65057664289737899970803883365989999999
Q gi|254780743|r 213 LGKWSNLCTPHSIIPTLATVHPQELIQYPLIKKNTWHA 250 (261)
Q Consensus 213 rG~~~~~~~~~~~i~~~pt~HPs~LLr~P~~K~~aW~D 250 (261)
. +..+++.-..|||- ++|...+. |..
T Consensus 205 ~---------g~~V~v~~i~HPSP--asp~aN~~-W~~ 230 (247)
T 1oe4_A 205 E---------GIDVTVKGIMHPSP--RNPQANKG-WEG 230 (247)
T ss_dssp T---------TCSCEEEEECCCCT--TCGGGTTT-HHH
T ss_pred C---------CCCCEEEECCCCCC--CCCHHCCC-CHH
T ss_conf 6---------99855864579999--88000058-489