HHsearch results for GI: 254780743 and protein with PDBid: 1oe4_A

>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=98.85  E-value=1.5e-08  Score=67.60  Aligned_cols=130  Identities=15%  Similarity=0.284  Sum_probs=90.4

Q ss_pred             CCCCCCEEEEECCCCCCC-CCCCCCCCC-----------------------------------CCHHHHHHHHHHCCCCC
Q ss_conf             888884899857898300-112001207-----------------------------------00489999998609862
Q gi|254780743|r  104 QTEGQDLMIIGYTPSDSD-NISGKPFSG-----------------------------------KTGNMLDKMLQSIEIMR  147 (261)
Q Consensus       104 G~~~a~imiVgeaPg~~E-d~~G~pF~G-----------------------------------~aG~lL~~mL~aigl~r  147 (261)
                      ++...+++|+|..||... -.+|.||..                                   .||..|-.+++..--+.
T Consensus        50 ~~~~~~vl~lGmNPGp~Gm~qTGVPFgd~~~vr~~l~i~~~v~~P~~~HPKRpi~G~~c~r~EvSg~rlW~l~~~~~g~p  129 (247)
T 1oe4_A           50 CKSKKEVLFLGMNPGPFGMAQTGVPFGEVNHVRDWLQIEGPVSKPEVEHPKRRIRGFECPQSEVSGARFWSLFKSLCGQP  129 (247)
T ss_dssp             CSSCCSEEEEESSCCTTTHHHHSSTTCCHHHHHHTTCCCCCCCCCSSCCTTSCCCGGGCCSCCHHHHHHHHHHHHHHSSH
T ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf             18999889983289877786418685887999878516674678854476776546576655653988999999883999


Q ss_pred             ----CCCCEEEEEECCC--CC--CCCCC---HHH----HHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHC
Q ss_conf             ----2210000000122--56--66677---889----999999999986322976799525599999844653310110
Q gi|254780743|r  148 ----TQIHISMISPWHP--PG--NRNLS---NIE----MEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQN  212 (261)
Q Consensus       148 ----~~vyitn~vkcrP--p~--nr~p~---~~e----i~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~  212 (261)
                          +++|+.|.++--+  ..  |++|.   ..|    ...|-.+|.+.|++.+|++||.+|+.|.+.+-.    .+ ..
T Consensus       130 e~ff~~~fv~N~CPL~f~~~~GkN~TP~~l~~~e~~~l~~~Cd~~L~~~v~~L~p~~VVgVG~~Ae~ra~~----al-~~  204 (247)
T 1oe4_A          130 ETFFKHCFVHNHCPLIFMNHSGKNLTPTDLPKAQRDTLLEICDEALCQAVRVLGVKLVIGVGRFSEQRARK----AL-MA  204 (247)
T ss_dssp             HHHHTTEEEEESCCCEEECTTCCEECGGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHH----HH-HH
T ss_pred             HHHHHHHEEEECCCCEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH----HH-CC
T ss_conf             89865342572377333188998688000588899999999999999999861972899977899999999----86-04


Q ss_pred             CCEEEEEECCCCCEEEEEEECHHHHHCCHHHHHHHHHH
Q ss_conf             65057664289737899970803883365989999999
Q gi|254780743|r  213 LGKWSNLCTPHSIIPTLATVHPQELIQYPLIKKNTWHA  250 (261)
Q Consensus       213 rG~~~~~~~~~~~i~~~pt~HPs~LLr~P~~K~~aW~D  250 (261)
                      .         +..+++.-..|||-  ++|...+. |..
T Consensus       205 ~---------g~~V~v~~i~HPSP--asp~aN~~-W~~  230 (247)
T 1oe4_A          205 E---------GIDVTVKGIMHPSP--RNPQANKG-WEG  230 (247)
T ss_dssp             T---------TCSCEEEEECCCCT--TCGGGTTT-HHH
T ss_pred             C---------CCCCEEEECCCCCC--CCCHHCCC-CHH
T ss_conf             6---------99855864579999--88000058-489