HHSEARCH alignment of GI: 254780743 and SCOP domain: d1muga_

Alignment
>d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]}
Probab=99.95  E-value=1.2e-27  Score=175.02  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=119.1

Q ss_pred             CCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC-------------CCCCEEEEEECCCCCCCCCCHHHH
Q ss_conf             8888489985789830011200120700489999998609862-------------221000000012256666778899
Q gi|254780743|r  105 TEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMR-------------TQIHISMISPWHPPGNRNLSNIEM  171 (261)
Q Consensus       105 ~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r-------------~~vyitn~vkcrPp~nr~p~~~ei  171 (261)
                      .++++|||||++||..++++|+||+| +|..|.++|..+|+..             ..+|+||+++|+++.++.|+.+|+
T Consensus         7 ~p~~~vlivG~~PG~~s~~~g~~f~~-p~n~fw~~l~~~g~~~~~~~~~~~~~l~~~~i~~~d~~~~~~~~~~~~s~~Ei   85 (165)
T d1muga_           7 APGLRVVFCGINPGLSSAGTGFPFAH-PANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQEL   85 (165)
T ss_dssp             CTTCSEEEEESSCCHHHHHHSSTTCS-TTCCHHHHHHHTTSSSSCCCGGGGGGGGGGTEEEEESCCCCCSSGGGSCHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHCCCCCCC-CHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHH
T ss_conf             99998899807989778855998268-48899999999737876677767644310446884376677888899999999


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEECHHHHHC-CHHHHHHHHHH
Q ss_conf             99999999986322976799525599999844653310110650576642897378999708038833-65989999999
Q gi|254780743|r  172 EICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQ-YPLIKKNTWHA  250 (261)
Q Consensus       172 ~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~HPs~LLr-~P~~K~~aW~D  250 (261)
                      ..|.+++.++|+.++|++|+++|+.|.+++++....    ..|.....   ..++++++++|||.+.+ +.+.|..+|.+
T Consensus        86 ~~~~~~l~~~i~~~~Pkii~~~G~~a~~~~~~~~~~----~~g~q~~~---~~~~~~~vlPspSp~~~~~~~~~~~~w~e  158 (165)
T d1muga_          86 HAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGA----QWGKQTLT---IGSTQIWVLPNPSGLSRVSLEKLVEAYRE  158 (165)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECHHHHHHHHTCCSC----CSEEEEEE---ETTEEEEEECCCSTTSCCCHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCEEEECCHHHHHHHHCCCCC----CCCCCCCC---CCCCCEEEEECCCHHHHCCHHHHHHHHHH
T ss_conf             865500899999849948998287999998467764----44542322---49967899707986785899999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780743|r  251 LIT  253 (261)
Q Consensus       251 L~~  253 (261)
                      |.+
T Consensus       159 l~~  161 (165)
T d1muga_         159 LDQ  161 (165)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Mug-like
domain: G:T/U mismatch-specific DNA glycosylase, Mug
species: Escherichia coli [TaxId: 562]