HHSEARCH alignment of GI: 254780743 and SCOP domain: d1vk2a_

Alignment
>d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=0  Score=357.64  Aligned_cols=184  Identities=19%  Similarity=0.385  Sum_probs=173.9

Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEE
Q ss_conf             69989999999600388520028772236788888489985789830011200120700489999998609862221000
Q gi|254780743|r   74 ACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHIS  153 (261)
Q Consensus        74 ~~~l~~L~~~~~~~~~C~L~~~~~~~v~g~G~~~a~imiVgeaPg~~Ed~~G~pF~G~aG~lL~~mL~aigl~r~~vyit  153 (261)
                      ...+++|++.+.+|+.|+|+.+++++|+|.|+++|+||||||+||.+||++|+||+|+||++|++||.++|++++++|+|
T Consensus         5 ~~~l~~L~~~i~~C~~C~L~~~~~~~V~g~G~~~a~imiVgeaPg~~e~~~g~pf~g~aG~~L~~~l~~~gl~~~~~~it   84 (191)
T d1vk2a_           5 EELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYIC   84 (191)
T ss_dssp             HHHHHHHHHHHHHCCSSGGGGTCSSCCCCEECTTCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCGGGSEEE
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999999999718789798799887579999986789996133566776476541778999999988632020472797


Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCCCCHHCCCEEEEEECCCCCEEEEEEEC
Q ss_conf             00001225666677889999999999986322976799525599999844653310110650576642897378999708
Q gi|254780743|r  154 MISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVH  233 (261)
Q Consensus       154 n~vkcrPp~nr~p~~~ei~~c~p~L~~ei~li~Pk~ii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~~~~~~i~~~pt~H  233 (261)
                      |+++|+||+||.|+..|++.|+|||.+||++++|++||+||++|++++++....++.+.||+|+++.   .+++++||||
T Consensus        85 ~~~kc~pp~~~~p~~~ei~~C~p~L~~ei~~i~Pkiii~lG~~a~~~ll~~~~~~i~~~rG~~~~~~---~~~~~~pt~H  161 (191)
T d1vk2a_          85 NVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVALGATALSFFVDGKKVSITKVRGNPIDWL---GGKKVIPTFH  161 (191)
T ss_dssp             ESCSSCCGGGCCCCHHHHHHHHHHHHHHHHHHCCSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECG---GGCEEEEECC
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCCCEEECC---CCCEEEEEEC
T ss_conf             3331347643345558999999988888765203013432608999986035565332367158868---9987999849


Q ss_pred             HHHHHCCH--HHHHHHHHHHHHHHHHHHC
Q ss_conf             03883365--9899999999999999860
Q gi|254780743|r  234 PQELIQYP--LIKKNTWHALITLKKALKN  260 (261)
Q Consensus       234 Ps~LLr~P--~~K~~aW~DL~~l~~~L~~  260 (261)
                      ||||+|||  ..|+.+|+||+++++.|++
T Consensus       162 Ps~llr~p~~~~k~~~~~Dl~~~k~~l~~  190 (191)
T d1vk2a_         162 PSYLLRNRSNELRRIVLEDIEKAKSFIKK  190 (191)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred             CHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             88986597788899999999999999824


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Uracil-DNA glycosylase-like
superfamily: Uracil-DNA glycosylase-like
family: Mug-like
domain: Thermophilic uracil-DNA glycosylase
species: Thermotoga maritima [TaxId: 2336]