RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] (261 letters) >d1ui0a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermus thermophilus [TaxId: 274]} Length = 192 Score = 78.3 bits (192), Expect = 6e-16 Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 11/192 (5%) Query: 76 SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNM 135 +L L++ ++ C L + LMI+G P + ++ +G+PF GK G + Sbjct: 1 TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQL 60 Query: 136 LDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICR-PIIMRQIELISPKILLFIG 194 L+++L++ I R +++I+ I PP NR E +IC +++QIELI+P+I++ +G Sbjct: 61 LNRILEAAGIPREEVYITNIVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLG 120 Query: 195 NKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYP-----LIKKNTWH 249 FF T GKW I HP L++ P K TW Sbjct: 121 AVAAEFFLGEKVSITKVR-GKWYEWHG----IKVFPMFHPAYLLRNPSRAPGSPKHLTWL 175 Query: 250 ALITLKKALKNL 261 + +K+AL L Sbjct: 176 DIQEVKRALDAL 187 >d1vk2a_ c.18.1.2 (A:) Thermophilic uracil-DNA glycosylase {Thermotoga maritima [TaxId: 2336]} Length = 191 Score = 74.6 bits (182), Expect = 7e-15 Identities = 35/190 (18%), Positives = 79/190 (41%), Gaps = 5/190 (2%) Query: 73 KACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKT 132 + + + ++ C L + + ++ +G P + ++ +G+PF G+ Sbjct: 4 REELMEIVSERVKKCTACPLHLNRTNVVVGEGNLDTRIVFVGEGPGEEEDKTGRPFVGRA 63 Query: 133 GNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLF 192 G +L ++L+ I R ++I + PP NR + E C ++ QIE+I+P +++ Sbjct: 64 GMLLTELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIINPDVIVA 123 Query: 193 IGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQYP--LIKKNTWHA 250 +G +FF + + G + + T HP L++ +++ Sbjct: 124 LGATALSFFVDGKKVSITKVRGNPIDW---LGGKKVIPTFHPSYLLRNRSNELRRIVLED 180 Query: 251 LITLKKALKN 260 + K +K Sbjct: 181 IEKAKSFIKK 190 >d1muga_ c.18.1.2 (A:) G:T/U mismatch-specific DNA glycosylase, Mug {Escherichia coli [TaxId: 562]} Length = 165 Score = 72.0 bits (176), Expect = 4e-14 Identities = 23/168 (13%), Positives = 50/168 (29%), Gaps = 25/168 (14%) Query: 105 TEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEI-------------MRTQIH 151 G ++ G P S +G PF+ N K++ + + Sbjct: 7 APGLRVVFCGINPGLSSAGTGFPFAHP-ANRFWKVIYQAGFTDRQLKPQEAQHLLDYRCG 65 Query: 152 ISMISPWHPPGNRNLSNIEMEICRPIIMRQIELISPKILLFIGNKTKNFFFNNDAQKTYQ 211 ++ + +S E+ ++ +IE P+ L +G + F+ + + Sbjct: 66 VTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQALAILGKQAYEQGFSQRGAQWGK 125 Query: 212 NLGKWSNLCTPHSIIPTLATVHPQELIQYPL-IKKNTWHALITLKKAL 258 + +P L + L + L +AL Sbjct: 126 QTLTIGS-------TQIWVLPNPSGLSRVSLEKLVEAYRE---LDQAL 163 >d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 196 Score = 25.8 bits (56), Expect = 3.5 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 50 IQPITNIRHIHSPLVQQADSIAQKACSLHELKSLLRSFHDCHL 92 I+ I ++ + PL + +A L E S+LRS + CHL Sbjct: 91 IRVIPDVYGVAVPLTPAVNPSTNRAVDLTE--SILRSAYHCHL 131 >d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Length = 192 Score = 25.4 bits (55), Expect = 4.6 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%) Query: 50 IQPITNIRHIHSPLVQQADSIAQKACSLHELKSLLRSFHDCHL 92 I+ I ++ + + + ++ L S+LRS H Sbjct: 91 IRLIADVAYTPMRVFPALNPETNESFDLSY--SVLRSVSPIHC 131 >d2q7sa1 c.56.5.9 (A:10-289) N-formylglutamate amidohydrolase {Ralstonia eutropha [TaxId: 106590]} Length = 280 Score = 25.6 bits (55), Expect = 4.8 Identities = 13/134 (9%), Positives = 32/134 (23%), Gaps = 7/134 (5%) Query: 48 SAIQPITNIRHIHSPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEG 107 + + I + P A + +H + + Sbjct: 123 TVAEVQRRINRYYRPYHA-----ALTEAVEGAYQRFGAVWHLNLHSMPNNAYERLKIQSP 177 Query: 108 QDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLS 167 + L D D + +P + + + Sbjct: 178 RPLADFVL--GDRDGTTCEPGLVDLVERELREKGYTVARNDPYKGVQLIAQIGRPAERRN 235 Query: 168 NIEMEICRPIIMRQ 181 ++++EI RP+ M + Sbjct: 236 SLQIEIRRPLYMEE 249 >d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 296 Score = 25.2 bits (54), Expect = 5.5 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Query: 76 SLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNM 135 +++ L++ + T L +I + +G++L ++ ++ G P NM Sbjct: 7 RQEGMEAFLKTVAQNYSSVTHLHSIGKS-VKGRNLWVLVVGRFPKEHRIGIPEFKYVANM 65 Query: 136 LDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPII 178 E++ I + S P NL N P + Sbjct: 66 HGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSM 108 >d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 354 Score = 24.7 bits (53), Expect = 7.2 Identities = 7/76 (9%), Positives = 22/76 (28%), Gaps = 1/76 (1%) Query: 111 MIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQ-IHISMISPWHPPGNRNLSNI 169 + + ++ G+P ++ ++ + ++ + P LS Sbjct: 108 LKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGY 167 Query: 170 EMEICRPIIMRQIELI 185 + Q + I Sbjct: 168 PFQCLGFTPEHQRDFI 183 >d2ey4a2 d.265.1.2 (A:8-252) Pseudouridine synthase II TruB {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 245 Score = 24.7 bits (53), Expect = 8.1 Identities = 7/40 (17%), Positives = 11/40 (27%) Query: 191 LFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLA 230 + + T+ A K Y L II + Sbjct: 87 VALEKATRVVQALLPAGKEYVALMHLHGDVPEDKIIQVMK 126 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.133 0.397 Gapped Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 943,106 Number of extensions: 41073 Number of successful extensions: 96 Number of sequences better than 10.0: 1 Number of HSP's gapped: 94 Number of HSP's successfully gapped: 16 Length of query: 261 Length of database: 2,407,596 Length adjustment: 84 Effective length of query: 177 Effective length of database: 1,254,276 Effective search space: 222006852 Effective search space used: 222006852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.2 bits)