BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] (261 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780743|ref|YP_003065156.1| putative uracil-DNA glycosylase [Candidatus Liberibacter asiaticus str. psy62] Length = 261 Score = 541 bits (1394), Expect = e-156, Method: Compositional matrix adjust. Identities = 261/261 (100%), Positives = 261/261 (100%) Query: 1 MTSKRILSQEQILTIALFYADSGVYWVFDEPNNEATYESQRKEKSIDSAIQPITNIRHIH 60 MTSKRILSQEQILTIALFYADSGVYWVFDEPNNEATYESQRKEKSIDSAIQPITNIRHIH Sbjct: 1 MTSKRILSQEQILTIALFYADSGVYWVFDEPNNEATYESQRKEKSIDSAIQPITNIRHIH 60 Query: 61 SPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS 120 SPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS Sbjct: 61 SPLVQQADSIAQKACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMIIGYTPSDS 120 Query: 121 DNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMR 180 DNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMR Sbjct: 121 DNISGKPFSGKTGNMLDKMLQSIEIMRTQIHISMISPWHPPGNRNLSNIEMEICRPIIMR 180 Query: 181 QIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY 240 QIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY Sbjct: 181 QIELISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLATVHPQELIQY 240 Query: 241 PLIKKNTWHALITLKKALKNL 261 PLIKKNTWHALITLKKALKNL Sbjct: 241 PLIKKNTWHALITLKKALKNL 261 >gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 26.6 bits (57), Expect = 0.50, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 23/40 (57%) Query: 74 ACSLHELKSLLRSFHDCHLCSTSLSTICATQTEGQDLMII 113 A S+ +L +LRS D + S+ S + Q EG+++ II Sbjct: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249 >gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 25.4 bits (54), Expect = 1.1, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 16/23 (69%) Query: 145 IMRTQIHISMISPWHPPGNRNLS 167 ++++QI I +PW PGNR ++ Sbjct: 231 LIKSQIVIWTTTPWTIPGNRAIA 253 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 24.6 bits (52), Expect = 1.6, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 19/29 (65%) Query: 27 VFDEPNNEATYESQRKEKSIDSAIQPITN 55 +F EP++ ATY Q +E ++ A+ I++ Sbjct: 114 LFSEPDSHATYFLQEQEMTLYDAVNFISH 142 >gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 24.6 bits (52), Expect = 1.8, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Query: 177 IIMRQIELISP-KILLFIGNKTKNFFFNN 204 II+ Q L +P K L+++G K +NF F + Sbjct: 105 IIVEQKVLFTPQKPLIYLGGKPRNFHFED 133 >gi|254780663|ref|YP_003065076.1| carbonate dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 207 Score = 23.9 bits (50), Expect = 2.6, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Query: 7 LSQEQILTI--ALFYADSGVYWVFDEPNNEATYESQ 40 L +E +L I A F SG W+ D +NE T +++ Sbjct: 172 LEKEHMLQIHGAWFDISSGKLWILDPTSNEFTCDTR 207 >gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter asiaticus str. psy62] Length = 480 Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Query: 33 NEATYESQRKEKSIDSAIQ-PITNIRHIHSPLVQQADSIAQKACSLHELKSLL 84 N + E Q+ D I+ I+N+R S L D+I K S H+ L Sbjct: 139 NTSAREVQKIRADADKEIELEISNLRRFLSELTVVNDAIKFKTASKHDAHDFL 191 >gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 562 Score = 23.9 bits (50), Expect = 3.0, Method: Compositional matrix adjust. Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 12/92 (13%) Query: 93 CSTSLSTICATQTEGQDLMIIGYTPSDSDNISGKPFSGKTGNMLDKMLQSIEIMRTQIHI 152 CS+++ T+ + +G +++G+ D + + GN++ +R +I++ Sbjct: 66 CSSAIDTLKSDTHDGGAGIVVGFPRQDQEGVLNSVVILDAGNII--------AVRDKINL 117 Query: 153 SMISPWHPPGNRNLSNIEMEICRPIIMRQIEL 184 S +H + I PI+ R I L Sbjct: 118 PNYSEFH----EKRTFISGYSNDPIVFRDIRL 145 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust. Identities = 13/47 (27%), Positives = 23/47 (48%) Query: 185 ISPKILLFIGNKTKNFFFNNDAQKTYQNLGKWSNLCTPHSIIPTLAT 231 +S + I NK +NF ++ ++K + + LCT +I L T Sbjct: 1 MSENMSFIISNKNENFLLSDWSKKKMKIVAGLILLCTVFAITLALGT 47 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 23.1 bits (48), Expect = 4.6, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%) Query: 26 WVFDEPNNEATYESQRKEKSIDSAIQPIT 54 W+ D P YE +EK ID A P T Sbjct: 436 WIMDFP----FYEWNEEEKKIDFAHNPFT 460 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.133 0.397 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 165,946 Number of Sequences: 1233 Number of extensions: 6775 Number of successful extensions: 26 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 13 length of query: 261 length of database: 328,796 effective HSP length: 72 effective length of query: 189 effective length of database: 240,020 effective search space: 45363780 effective search space used: 45363780 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 37 (18.9 bits)