RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR01188
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302
Score = 167 bits (426), Expect = 2e-42
Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 2/213 (0%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
K Y V GV+ V+ GE+ G LGPNGAGKTT M+T L+ SG+ ++ G D+ +
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
P R +GI +PQ AS+ LT EN+ + +Y K + E+ + LL+ F + +
Sbjct: 61 PRKVRRSIGI--VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
SGG RRRL+IA SL+ P + LDEP G+DP I IR L G+ IL
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+T H + E L DR II G ++A GT +E+
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211