>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708

Score = 70.5 bits (173), Expect = 4e-13 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 27/222 (12%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++ + L +K ++G +G+GK+T ++ G A SG I ++G + + + + Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 Query: 100 LGISYLPQEASIFRGLTVE------------ENILAVLEVYE--KDKKKRHEKLDSLLKE 145 I+YLPQE IF G +E + I A E+ E D + + L E Sbjct: 549 F-INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + +SGGQ++R+ +AR+L++ ++LDE + +D + I + +L Sbjct: 608 EGSS---------ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 + I I + H + + D+ ++ G ++ G+ E++D Sbjct: 659 DKTI-IFVA-HRL-SVAKQSDKIIVLDHGKIIEQGSHDELLD 697

RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR01193