RPSBLAST alignment for GI: 254780744 and conserved domain: TIGR01257

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272

 Score = 96.2 bits (239), Expect = 7e-21
 Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%)

Query: 20   ASKDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77
             +K  +L    LTK Y   S   V  + + V+PGE  GLLG NGAGKTT F M+TG    
Sbjct: 1932 GNKTDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV 1991

Query: 78   DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
             SG   + G  I  +         + Y PQ  +I   LT  E+    L +Y + +    E
Sbjct: 1992 TSGDATVAGKSI--LTNISDVHQNMGYCPQFDAIDDLLTGREH----LYLYARLRGVPAE 2045

Query: 138  KLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
            +++ +    ++   ++ +   LA   SGG +R+L  A +L+  P  +LLDEP  G+DP A
Sbjct: 2046 EIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105

Query: 194  ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
               +   I  +   G  +++T H++ E   L  R  I+  G     GT+Q +
Sbjct: 2106 RRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157