RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(262 letters)
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 359 bits (924), Expect = e-100
Identities = 150/243 (61%), Positives = 181/243 (74%), Gaps = 2/243 (0%)
Query: 22 KDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
S L A +L K Y VV V L V GEIVGLLGPNGAGKTT FYM+ GL+ DSG
Sbjct: 1 DMSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60
Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK--L 139
I +D DITK+PM++RARLGI YLPQEASIFR LTVE+NI+AVLE+ EKD KK K L
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEEL 120
Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
D+LL+EF+IT R A LSGG+RRR+EIAR+L + P +ILLDEPFAGVDP+A+ DI
Sbjct: 121 DALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQR 180
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGDR 259
+I+ L RGIG+LITDHNV E L + DRAYII G VLA G+ +EI++N+DVRR+YLG+
Sbjct: 181 IIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVYLGEN 240
Query: 260 FAF 262
F
Sbjct: 241 FKL 243
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 354 bits (911), Expect = 1e-98
Identities = 149/232 (64%), Positives = 181/232 (78%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L A +L+K+Y VV GV L VK GEIVGLLGPNGAGKTT FYM+ GL+ DSG I +D
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G DITK+PM++RARLGI YLPQEASIFR LTVEENILAVLE+ KK+R EKL+ LL+E
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEE 120
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
F+IT R A LSGG+RRR+EIAR+L + P ++LLDEPFAGVDP+A+ DI +I+ L
Sbjct: 121 FHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK 180
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
RGIG+LITDHNV E L++ DRAYII+ G VLA GT +EI N+ VR++YLG
Sbjct: 181 DRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKVYLG 232
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 214 bits (548), Expect = 2e-56
Identities = 90/236 (38%), Positives = 138/236 (58%), Gaps = 10/236 (4%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L LTK++ + + V V+PGEI GL+GPNGAGKTT F +++G + SGS+ D
Sbjct: 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFD 60
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL----------AVLEVYEKDKKKR 135
G DIT +P + ARLGI Q +F LTV EN++ +L +++++
Sbjct: 61 GEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREA 120
Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
E+ + LL+ + A LS GQ+RRLEIAR+L + P +LLDEP AG++P
Sbjct: 121 RERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE 180
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
++ LIR+L RGI +L+ +H++ +++L DR ++ G V+A GT E+ +N V
Sbjct: 181 ELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPRV 236
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 211 bits (539), Expect = 2e-55
Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 13/248 (5%)
Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82
LL L+K++ + V V L V+PGEIVGL+GPNGAGKTT F ++TG SG++
Sbjct: 2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAV------------LEVYEK 130
G DIT +P +R ARLGI+ Q +F GLTV EN+ K
Sbjct: 62 IFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARK 121
Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
++++ E+ LL+ + + A LS GQ+RRLEIAR+L + P +LLDEP AG++
Sbjct: 122 EEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLN 181
Query: 191 PVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
P ++ LIR+L R G+ IL+ +H++ ++ L DR +++ G V+A GT +E+ +N
Sbjct: 182 PEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
Query: 250 DVRRLYLG 257
V YLG
Sbjct: 242 RVIEAYLG 249
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 203 bits (518), Expect = 4e-53
Identities = 92/237 (38%), Positives = 137/237 (57%), Gaps = 3/237 (1%)
Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82
+L +L+ Y + ++GV L V+ GEIV LLG NGAGKTT + GL+ SG I
Sbjct: 1 APMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
DG DIT +P + RARLGI+Y+P+ IF LTVEEN+L + + L+ +
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE-RDLEEV 119
Query: 143 LKEF-NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
+ F + + R+ A LSGG+++ L IAR+L+S P +LLDEP G+ P + +I I
Sbjct: 120 YELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 179
Query: 202 RDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
++L G+ IL+ + N L + DR Y++ G ++ GT E++ + DVR YLG
Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAYLG 236
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 201 bits (512), Expect = 2e-52
Identities = 88/226 (38%), Positives = 135/226 (59%), Gaps = 4/226 (1%)
Query: 24 SLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82
++ +LTKKY + GV V+PGEI GLLGPNGAGKTT ++ GL+ SG I
Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
+ G D+ K P R R+G Y+PQE S++ LTV EN+ +Y K++ E+++ L
Sbjct: 63 LVLGYDVVKEPAKVRRRIG--YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL 120
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
L+ F + + LSGG ++RL IA +L+ P ++LDEP +G+DP + +I L+R
Sbjct: 121 LELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLR 180
Query: 203 DLASRG-IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+LA G + IL++ H + E L DR I++ G ++A GT +E+ +
Sbjct: 181 ELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 200 bits (510), Expect = 4e-52
Identities = 95/224 (42%), Positives = 132/224 (58%), Gaps = 3/224 (1%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L +L Y ++ GV L V GEIV LLG NGAGKTT + GL+ SGSI+ D
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G DIT +P + RAR GI Y+P+ IF LTVEEN+L L Y + + KR +L+ + +
Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLL--LGAYARRRAKRKARLERVYEL 118
Query: 146 FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
F K R LA LSGG+++ L IAR+L+S P +LLDEP G+ P + +I IR+L
Sbjct: 119 FPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL 178
Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
G+ IL+ + N L + DRAY++ G V+ GT E++ +
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 176 bits (449), Expect = 4e-45
Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%)
Query: 26 LSACSLTKKYNS--VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
L +LTK Y V + L V GEI GLLG NGAGKTT M+TG + SG+
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
I+G I + AR + Y PQ ++F LTV E++ + K + E+++ LL
Sbjct: 61 INGYSIRTDR--KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
+ +T + A LSGG +R+L +A +L+ PS +LLDEP +G+DP + I LI +
Sbjct: 119 RVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ +G I++T H++ E L DR I+ G + G+ QE+
Sbjct: 179 V-RKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 170 bits (432), Expect = 4e-43
Identities = 73/211 (34%), Positives = 110/211 (52%), Gaps = 38/211 (18%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+ +L+K+Y + + L V+ GEI GLLGPNGAGKTT ++ GL+ DSG IK+
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G DI K P + R+G YLP+E S++ LTV EN+
Sbjct: 61 GKDIKKEPEEVKRRIG--YLPEEPSLYENLTVRENL------------------------ 94
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
LSGG ++RL +A++L+ P ++LDEP +G+DP + + L+R+L
Sbjct: 95 ------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
G IL++ H + E L DR I++ G +
Sbjct: 143 KEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 168 bits (426), Expect = 2e-42
Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 11/231 (4%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
LT Y + V++ + L V+ GEI L+GPNGAGK+T + GL+ SG IKI G +
Sbjct: 10 LTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR 69
Query: 91 KMPMYRRARLGISYLPQEASIFRG--LTVEENILAVLE----VYEKDKKKRHEKLDSLLK 144
K RR RL I Y+PQ++S+ R +TV++ +L + + KK EK+D L+
Sbjct: 70 K----RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALE 125
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ R LSGGQ++R+ +AR+L P +LLDEPF GVD +I+ L+++L
Sbjct: 126 RVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185
Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
G +L+ H++ ++ DR I ++A G +E++ +++ + +
Sbjct: 186 RQEGKTVLMVTHDLGLVMAYFDR-VICLNRHLIASGPPEEVLTEENLEKAF 235
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 165 bits (419), Expect = 1e-41
Identities = 87/216 (40%), Positives = 116/216 (53%), Gaps = 3/216 (1%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
L KKY V+GV V+ GEI GLLGPNGAGKTT M+T L+ SG + G+D+
Sbjct: 6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVV 65
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
+ P R R I + Q+ S+ LT EN+ +Y +R E++D LL + +
Sbjct: 66 REP--REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLE 123
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGI 209
L SGG RRRLEIARSLV P + LDEP G+DP + + I L G+
Sbjct: 124 AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
IL+T H + E L DR II G ++A GT +E+
Sbjct: 184 TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 163 bits (414), Expect = 4e-41
Identities = 74/211 (35%), Positives = 116/211 (54%), Gaps = 4/211 (1%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
L+K Y SV + + L V+PGE + LLGP+G GKTT ++ GL DSG I IDG D+T
Sbjct: 6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVT 65
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
+P RR I + Q+ ++F LTV ENI L++ K + ++ LL+ +
Sbjct: 66 GVPPERR---NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEG 122
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGI 209
+ LSGGQ++R+ +AR+L PS +LLDEP + +D ++ +++L GI
Sbjct: 123 LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGI 182
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
+ H+ E L L DR +++ G ++ G
Sbjct: 183 TTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 161 bits (410), Expect = 1e-40
Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
LTK + V+KGVDL V+ GEI+ ++GP+G+GK+T ++ GL+ DSG + IDG DI+
Sbjct: 6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDIS 65
Query: 91 KM--PMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFN 147
+ R R + L Q ++F LTV EN+ + E +++ E + L+
Sbjct: 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVG 125
Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-AS 206
+ + LSGG ++R+ +AR+L P +L DEP AG+DP+A I LIR L
Sbjct: 126 LRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE 185
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
G+ ++ H++ + DR +++ G ++A GT +E+ + D
Sbjct: 186 LGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 159 bits (405), Expect = 5e-40
Identities = 82/249 (32%), Positives = 137/249 (55%), Gaps = 11/249 (4%)
Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79
AS + L+ +TK + ++ GVDL V GEI+ +LG +G+GK+T ++ GL+ D
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK 62
Query: 80 GSIKIDGNDITKMPMYRR--ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
G I IDG DI ++ R + L Q+ ++F LTV EN+ + E K
Sbjct: 63 GEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV--AFPLREHTKLPESL 120
Query: 138 KLDSLLKEFNITKWRHVLAPL----LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
+ +L + + R A L LSGG R+R+ +AR++ P + LDEP +G+DP++
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180
Query: 194 ISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD-- 250
I LIR+L + G+ +++ H++ +LT+ DR ++ G V+A GT +E++ + D
Sbjct: 181 AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPW 240
Query: 251 VRRLYLGDR 259
VR+ + G R
Sbjct: 241 VRQFFNGIR 249
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 157 bits (399), Expect = 3e-39
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 2/197 (1%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
+ + L +K GE V ++GPNG+GK+T ++ GL+ SG + +DG D+TK+ +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELR 74
Query: 99 RLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
R + + Q F G TVEE + LE +++ E+++ L+ + R
Sbjct: 75 RK-VGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF 133
Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217
LSGGQ++R+ IA L P +LLDEP AG+DP ++ L++ L + G I+I H+
Sbjct: 134 TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHD 193
Query: 218 VHEILTLIDRAYIIHAG 234
+ +L L DR ++ G
Sbjct: 194 LDLLLELADRVIVLEDG 210
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 156 bits (395), Expect = 7e-39
Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 5/227 (2%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+TK + V + V PGEI GLLGPNGAGKTT F M+ GL+ G I +G +
Sbjct: 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL 66
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+ + + I YLP+E ++ +TVE+ + + E+ K + +KL + L+ I
Sbjct: 67 S-----QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV 121
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
+ LS G +++++ +++ P ++LDEPF+G+DPV + + I +L G
Sbjct: 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYL 256
I+ + H + + L DR ++ G + +GTV++I + +RL +
Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVI 228
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 155 bits (392), Expect = 1e-38
Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 4/220 (1%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
++ K + S V+K V+L ++ GE V LLGP+G GK+T M+ GL SG I IDG D+
Sbjct: 8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDV 67
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
T +P +R GI+ + Q +++ +TV ENI L++ K + +++ + K +
Sbjct: 68 TDLPPEKR---GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE 124
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV-AISDIHVLIRDLASRG 208
+ LSGGQR+R+ +AR+LV P LLDEP + +D + + + G
Sbjct: 125 HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG 184
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ H+ E +TL DR +++ G + GT E+ +
Sbjct: 185 TTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 154 bits (391), Expect = 2e-38
Identities = 78/216 (36%), Positives = 119/216 (55%), Gaps = 13/216 (6%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
LT Y V++ V VKPGE + ++GPNGAGK+T + GL+ SGSI++ G +
Sbjct: 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE 64
Query: 91 KMPMYRRARLGISYLPQEASIFRG--LTVEENILAVL----EVYEKDKKKRHEKLDSLLK 144
K R I Y+PQ SI R ++V + +L L ++ + K K+D L+
Sbjct: 65 KE------RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALE 118
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+++ LSGGQ++R+ +AR+LV P +LLDEPFAGVDP DI+ L+R+L
Sbjct: 119 RVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
G+ IL+ H++ +L DR ++ V+A G
Sbjct: 179 RREGMTILVVTHDLGLVLEYFDRVLLL-NRTVVASG 213
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 153 bits (389), Expect = 4e-38
Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 5/227 (2%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
L +++K + V + L +K GE V LLGP+G GKTT M+ G SG
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 81 SIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK-RHEKL 139
I +DG DIT +P +R I + Q ++F +TVEEN+ L+V +K KK ++
Sbjct: 61 EILLDGEDITDVPPEKR---PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
+ L+ + + LSGGQ++R+ +AR+LV P +LLDEP + +D +
Sbjct: 118 EEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRK 177
Query: 200 LIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+++L GI + H+ E L + DR +++ G + GT +EI
Sbjct: 178 ELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 151 bits (383), Expect = 2e-37
Identities = 68/237 (28%), Positives = 125/237 (52%), Gaps = 6/237 (2%)
Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
+L +L+ Y ++ + + GEI G+LGPNG+GK+T + GL+ SG +
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKL 139
+DG DI + A+ ++Y+PQ S GLTV E +L L ++ + K+ E +
Sbjct: 61 LDGKDIASLSPKELAKK-LAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
+ L+ + LSGG+R+R+ IAR+L +LLDEP + +D ++
Sbjct: 120 EEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179
Query: 200 LIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
L+RDL +G+ +++ H+++ D ++ G ++A GT +E++ +++R +Y
Sbjct: 180 LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVY 236
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 150 bits (380), Expect = 3e-37
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 1/229 (0%)
Query: 18 NRASKDSLLSACSLTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76
R+S S L +L+K Y V+G+ V PGE GLLG NGAGKTT F M+TG
Sbjct: 557 FRSSYSSALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK 616
Query: 77 ADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRH 136
SG I G+DIT +++ R + Y PQ +++ LT E++ + +
Sbjct: 617 PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIG 676
Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
++ LL+ + + + SGG +RRL A +L+ PS ILLDEP G+DP A
Sbjct: 677 SAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRH 736
Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ +I L G I++T H++ E L R I+ G + G+ QE+
Sbjct: 737 LWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 150 bits (380), Expect = 3e-37
Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 3/222 (1%)
Query: 25 LLSACSLTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
+L LTK Y S V V+ V + GEI GLLG NGAGKTT M+ L+ DSG +
Sbjct: 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
IDG D + P + R ++G+ L E ++ LT EN+ + +K+ ++ L
Sbjct: 61 IDGVDTVRDPSFVRRKIGV--LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
K + ++ S G ++++ IAR+LV PS ++LDEP +G+D H I+
Sbjct: 119 KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
L + G ++ + H + E+ L DR ++H G V+ G+++ +
Sbjct: 179 LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 150 bits (380), Expect = 5e-37
Identities = 75/210 (35%), Positives = 108/210 (51%), Gaps = 7/210 (3%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
LTK Y V+ + L+VK GEI G LGPNGAGKTT ++ GLI DSG I DG
Sbjct: 6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ 65
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
K + R+G L + + LT EN L + + R +++D +L +
Sbjct: 66 K-NIEALRRIGA--LIEAPGFYPNLTAREN----LRLLARLLGIRKKRIDEVLDVVGLKD 118
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
S G ++RL IA +L+ P ++LDEP G+DP I ++ LI L +GI
Sbjct: 119 SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
+LI+ H + EI + DR II+ G ++ G
Sbjct: 179 VLISSHLLSEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 149 bits (378), Expect = 8e-37
Identities = 65/213 (30%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82
+LL ++K + V V++ ++L V+ GE V +LGP+G GK+T ++ GL SG +
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
+DG +T I Y+ QE ++ LTV +N+ LE+ K K + E+ L
Sbjct: 61 LLDGRPVT------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
L+ + + LSGG R+R+ IAR+L + P +LLDEPF +D + ++ +
Sbjct: 115 LELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 203 DLASR-GIGILITDHNVHEILTLIDRAYIIHAG 234
L +L+ H+V E + L DR ++
Sbjct: 175 RLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 148 bits (376), Expect = 1e-36
Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 1/232 (0%)
Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
++ +L+K + V+KG+ L V+ GE+V ++GP+G+GK+T + GL DSGSI
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSL 142
+DG D+ + R + + Q+ ++F LTV EN+ LA ++V + K + EK L
Sbjct: 61 VDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL 120
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
L++ + LSGGQ++R+ IAR+L P +L DEP + +DP + ++ +++
Sbjct: 121 LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK 180
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254
DLA G+ ++I H + + DR + G ++ G +E DN R
Sbjct: 181 DLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERT 232
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 147 bits (372), Expect = 4e-36
Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 4/221 (1%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++K+Y + V V+L ++ GE + L+GP+G+GKTT M+ LI SG I IDG DI+
Sbjct: 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS 66
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI-- 148
+ R I Y+ Q+ +F LTV ENI V ++ DK++ ++ D LL +
Sbjct: 67 DLDPV-ELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR- 207
+++ LSGGQ++R+ +AR+L + P +L+DEPF +DP+ + I++L
Sbjct: 126 SEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL 185
Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
G I+ H++ E L L DR ++ AG ++ + T EI+ N
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 146 bits (370), Expect = 5e-36
Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 5/233 (2%)
Query: 23 DSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
++ A +L+ +Y +K V L ++ GE V L+GPNG+GK+T ++ GL+ SG
Sbjct: 1 LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 82 IKIDGNDITKMPMYRRARLGISYLPQ--EASIFRGLTVEENILAVLEVYEKDKKKRHEKL 139
+ +DG D + R + + Q + +F G TVE+ + LE +++ E++
Sbjct: 61 VLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERV 119
Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
L+ + + LSGGQ++R+ IA L P +LLDEP AG+DP ++
Sbjct: 120 AEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 200 LIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
L++ L G I+I H++ +L DR ++ G +LA G EI ++ ++
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAEL 232
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 145 bits (368), Expect = 9e-36
Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 4/242 (1%)
Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79
S LL ++K + V + GV L V+PGE+ LLG NGAGK+T +++G+ DS
Sbjct: 3 MSTPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS 62
Query: 80 GSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK----DKKKR 135
G I IDG + GI+ + QE S+ L+V ENI E + D+K
Sbjct: 63 GEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122
Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
+ LL + L LS QR+ +EIAR+L ++LDEP A +
Sbjct: 123 RRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE 182
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
+ LIR L ++G+ I+ H + E+ + DR ++ G V+ ++ RL
Sbjct: 183 RLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLM 242
Query: 256 LG 257
+G
Sbjct: 243 VG 244
Score = 120 bits (302), Expect = 5e-28
Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 9/208 (4%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+ V V+ GEI+G+ G GAG+T + G A SG I +DG + +
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 100 LGISYLP---QEASIFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFNI-TK 150
GI+Y+P + + +++ ENI LA L + + D++K + ++ I T
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP 393
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
LSGG ++++ +AR L + P ++LDEP G+D A ++I+ LIR+LA+ G
Sbjct: 394 SPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLA 238
IL+ + E+L L DR ++ G ++
Sbjct: 454 ILMISSELPELLGLSDRILVMREGRIVG 481
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 145 bits (367), Expect = 1e-35
Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 14/248 (5%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
+L ++ + + + V PGE+ L+GPNGAGKTT ++TG G
Sbjct: 1 MNPIILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG 60
Query: 81 SIKIDGN-DITKMPMYRRARLGISYLPQEASIFRGLTVEEN----------ILAVLEVYE 129
+ DG+ D+TK+P +R AR GI Q+ ++F LTV EN + A L
Sbjct: 61 EVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL 120
Query: 130 KDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
+ +++R ++D LL + R LA LLS GQ++ LEI L P +LLDEP AG+
Sbjct: 121 RAEERR--RIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
L++ LA IL+ +H++ + + D+ ++H G VLA G++ E+ ++
Sbjct: 179 TDAETEKTAELLKSLA-GKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
Query: 250 DVRRLYLG 257
V +YLG
Sbjct: 238 KVIEVYLG 245
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 145 bits (366), Expect = 2e-35
Identities = 78/220 (35%), Positives = 116/220 (52%), Gaps = 6/220 (2%)
Query: 25 LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
+++A +LTK++ +V V GV VKPGE+ GLLGPNGAGKTT M+ GL+ D+G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 81 SIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140
+DG D+ K P R RLG + ++ LT EN+ +Y + +L+
Sbjct: 61 FATVDGFDVVKEPAEARRRLGF--VSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLE 118
Query: 141 SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
L + + S G R+++ IAR+LV P +LLDEP G+D +A +
Sbjct: 119 ELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREF 178
Query: 201 IRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
IR L + G IL + H + E+ L DR ++H G V+ G
Sbjct: 179 IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 142 bits (361), Expect = 6e-35
Identities = 80/217 (36%), Positives = 120/217 (55%), Gaps = 8/217 (3%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L +LTK+Y + GV L + PG + GLLGPNGAGKTT ++ L SG+I+ID
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEE--NILAVLEVYEKDKKKRHEKLDSLL 143
G D+ K P R R+G YLPQE ++ TV E + +A L K+ ++D +L
Sbjct: 60 GQDVLKQPQKLRRRIG--YLPQEFGVYPNFTVREFLDYIAWL--KGIPSKEVKARVDEVL 115
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
+ N+ LSGG RRR+ IA++LV PS +++DEP AG+DP L+ +
Sbjct: 116 ELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175
Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
L I IL T H V ++ +L ++ +++ G ++ G
Sbjct: 176 LGEDRIVILST-HIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 143 bits (361), Expect = 7e-35
Identities = 64/215 (29%), Positives = 122/215 (56%), Gaps = 5/215 (2%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L ++TK++ V + + V+ GEI GLLGPNGAGKTT M+ G+I DSG + D
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G P+ AR I YLP+E ++ + V + ++ + ++ K++ ++D L+
Sbjct: 61 GK-----PLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
++++ + LS G +++++ +++ P ++LDEPF+G+DPV + + +IR+LA
Sbjct: 116 LELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
G ++++ H + + L DR +++ G + +G
Sbjct: 176 RAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 142 bits (359), Expect = 1e-34
Identities = 62/228 (27%), Positives = 114/228 (50%), Gaps = 15/228 (6%)
Query: 26 LSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
L +++K Y +V ++ + L V+ GE V L+GP+G GK+T ++ GL SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS 141
+ +DG +T Y+ Q+ ++ LTV +N+ LE+ K + E+ +
Sbjct: 61 VLVDGEPVT------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
LL+ ++ + + LSGG R+R+ +AR+L P +LLDEPF+ +D + + +
Sbjct: 115 LLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
Query: 202 RDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
D+ G +L+ H++ E + L DR ++ A G + ++
Sbjct: 175 LDIWRETGKTVLLVTHDIDEAVFLADRVVVLSAR----PGRIVAEVEV 218
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 141 bits (358), Expect = 2e-34
Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 9/217 (4%)
Query: 26 LSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
+ +L+K Y V +KGV L ++ GE V ++GP+G+GK+T ++ GL SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 82 IKIDGNDITKMPMYRRARL---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
+++DG DI+K+ A I ++ Q ++ LT EN+ L + KK+R E+
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
+ LL+ + + LSGGQ++R+ IAR+L + P IL DEP +D ++
Sbjct: 121 AEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVM 180
Query: 199 VLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAG 234
L+R+L G I++ H+ E+ DR + G
Sbjct: 181 ELLRELNKEAGTTIVVVTHD-PELAEYADRIIELRDG 216
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 140 bits (355), Expect = 3e-34
Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 3/217 (1%)
Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK 91
+V + V L + GEI G++G +GAGK+T ++ L SGS+ +DG D+T
Sbjct: 13 QTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72
Query: 92 MPMY--RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+ R+ R I + Q ++ TV EN+ LE+ K + +++ LL+ ++
Sbjct: 73 LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS 132
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRG 208
LSGGQ++R+ IAR+L + P +L DE + +DP I L++D+ G
Sbjct: 133 DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELG 192
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ I++ H + + + DR ++ G ++ GTV E+
Sbjct: 193 LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 139 bits (352), Expect = 8e-34
Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 4/220 (1%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+++K Y + GV L +K GE LLGP+G GKTT ++ G SG I +DG DI
Sbjct: 5 NVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDI 64
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
T +P ++R ++ + Q ++F LTV ENI L + + K + E++ L +
Sbjct: 65 TNLPPHKR---PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE 121
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
+ + LSGGQ++R+ IAR+LV+ P +LLDEP +D D+ + ++ L G
Sbjct: 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELG 181
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
I + H+ E LT+ DR +++ G + GT +EI +
Sbjct: 182 ITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 139 bits (351), Expect = 1e-33
Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 25 LLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
++ +++K Y V +K V+L ++ GE V ++GP+G+GK+T ++ GL SG
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 81 SIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135
+ I+G D+TK+ RR ++G ++ Q ++ LTV EN+ L + K +R
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIG--FVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 136 HEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
+ LL+ + P LSGGQ++R+ IAR+L++ P IL DEP +D
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 195 SDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
++ L+R+L RG I++ H+ E+ DR + G +
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHD-PELAKYADRVIELKDGKI 220
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 138 bits (349), Expect = 2e-33
Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 7/226 (3%)
Query: 30 SLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+++K + V +K V L V GEI G++G +GAGK+T + GL SGS+ +D
Sbjct: 6 NVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65
Query: 86 GNDITKMP--MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
G D+T + R+AR I + Q ++ TV EN+ LE+ K + E++ LL
Sbjct: 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELL 125
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
+ + LSGGQ++R+ IAR+L + P +L DE + +DP I L+RD
Sbjct: 126 ELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRD 185
Query: 204 L-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ G+ I++ H + + + DR ++ G V+ GTV+E+ N
Sbjct: 186 INRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 137 bits (347), Expect = 2e-33
Identities = 68/206 (33%), Positives = 104/206 (50%), Gaps = 36/206 (17%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++K+Y V+ V L ++ GEIV LLGP+G+GK+T + GL DSGSI IDG D+T
Sbjct: 6 VSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT 65
Query: 91 KMPMYRRA-RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+ R I + Q+ ++F LTV ENI
Sbjct: 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENI---------------------------- 97
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRG 208
A LSGGQ++R+ +AR+L P +LLDEP + +DP+ ++ L++ L A G
Sbjct: 98 ------ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151
Query: 209 IGILITDHNVHEILTLIDRAYIIHAG 234
I +++ H++ E L DR ++ G
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDG 177
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 135 bits (341), Expect = 1e-32
Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 19/229 (8%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKI 84
L Y + +K + L + GEI L+GP+G GK+T ++ L D G + +
Sbjct: 5 DLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64
Query: 85 DGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLD 140
DG DI + + R R+G+ + Q+ + F G ++ +N+ L ++ K K++ E+++
Sbjct: 65 DGKDIYDLDVDVLELRRRVGMVF--QKPNPFPG-SIYDNVAYGLRLHGIKLKEELDERVE 121
Query: 141 SLLKEFNITKWRHVLAPL----LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
L++ + W V L LSGGQ++RL +AR+L + P +LLDEP + +DP++ +
Sbjct: 122 EALRKAAL--WDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
I LI +L I+I HN+ + + DR + G ++ G ++I
Sbjct: 180 IEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 135 bits (341), Expect = 1e-32
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 5/220 (2%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+L+K + + +K V L V+ G+ +LGP G+GK+ + G I DSG I ++G DI
Sbjct: 5 NLSKDWKE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDI 63
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
T +P +R ISY+PQ ++F +TV +NI L+ + DKK+ K+ + + I
Sbjct: 64 TNLPPEKR---DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID 120
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
+ LSGG+++R+ IAR+LV P +LLDEPF+ +D + ++ + G
Sbjct: 121 HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ +L H+ E L D+ I+ G ++ G +E+
Sbjct: 181 VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 132 bits (334), Expect = 9e-32
Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%)
Query: 30 SLTKKYNSVY-VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
++TK+Y V ++L + GE + L+GP+G+GKTT M+ LI SG I IDG D
Sbjct: 5 NVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGED 64
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148
I + R I Y+ Q+ +F +TVEENI V ++ + K+K E+ D LL +
Sbjct: 65 IREQDPVELRR-KIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGL 123
Query: 149 --TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
++ LSGGQ++R+ +AR+L + P +L+DEPF +DP+ + + L
Sbjct: 124 DPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQ 183
Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
G I+ H++ E L DR I+ G ++ GT EI+ +
Sbjct: 184 ELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 132 bits (332), Expect = 1e-31
Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 9/224 (4%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---N 87
+ K++ + + + L +K GE+V LLGP+GAGK+T ++ GL D+G I+++G
Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLF 67
Query: 88 DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLLKE 145
D++ + + R + ++ Q ++F +TV +NI L+V ++ + + +++ LL+
Sbjct: 68 DVSNLAVRDR---KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL 124
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ LSGGQR+R+ +AR+L P +LLDEPF +D ++ +R L
Sbjct: 125 VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184
Query: 206 SR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
R G+ + H+ E L L DR +++ G + G E+ D+
Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 131 bits (331), Expect = 2e-31
Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 3/241 (1%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
L +TK++ V V L VK GEI LLG NGAGK+T ++ GL DSG I++
Sbjct: 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE---KDKKKRHEKLDS 141
DG ++ RLGI + Q + LTV ENI+ LE + D+++ ++
Sbjct: 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKE 123
Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
L + + + LS G+++R+EI ++L ++LDEP A + P ++ ++
Sbjct: 124 LSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEIL 183
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGDRFA 261
R LA+ G I+ H + E++ + DR ++ G V+ +++ L +G
Sbjct: 184 RRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVAETTEEELAELMVGREVV 243
Query: 262 F 262
Sbjct: 244 L 244
Score = 109 bits (274), Expect = 8e-25
Identities = 71/252 (28%), Positives = 121/252 (48%), Gaps = 19/252 (7%)
Query: 10 IEMPEFQENRASKDSLLSACSLT-KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFF 68
+ + + + +L L+ K V VK V V+ GEIVG+ G G G++
Sbjct: 242 VVLRVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 69 YMMTGLICADSGSIKIDGNDI-TKMPMYRRARLGISYLPQEASIFRGL----TVEENILA 123
++GL SG I ++G D+ ++ R RLG++Y+P++ GL ++ EN+
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPED-RHGHGLVLDLSLAENL-- 358
Query: 124 VLEVYEKDKKKRHEKLD---------SLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSL 173
VL ++K R LD L++EF++ A LSGG +++L +AR L
Sbjct: 359 VLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAREL 418
Query: 174 VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHA 233
P ++ +P G+D AI IH + +L G +L+ ++ EIL L DR +I+
Sbjct: 419 ARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYE 478
Query: 234 GGVLAHGTVQEI 245
G ++ +E
Sbjct: 479 GRIVGIVPPEEA 490
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 131 bits (330), Expect = 3e-31
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 12/228 (5%)
Query: 25 LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
LL +L+ + SV + V +K GE +GL+G +G+GK+T + GL+ SG
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 81 SIKIDGNDITKMPMYRRARLG--ISYLPQEA--SIFRGLTVEENILAVLEVYEKDKKKRH 136
SI DG D+ K+ R I + Q+ S+ +T+ E I L ++ K KK
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 137 EKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
K LL + VL LSGGQR+R+ IAR+L P ++ DEP + +D
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180
Query: 194 ISDIHVLIRDLAS-RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
+ I L++ L G+ +L H++ + + DR +++AG ++ G
Sbjct: 181 QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 129 bits (327), Expect = 5e-31
Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 8/223 (3%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++K++ + V L + GE+V LLGP+G+GKTT ++ GL DSG+I G D T
Sbjct: 8 VSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDAT 67
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK----DKKKRHEKLDSLLKEF 146
+P+ R + ++ Q ++FR +TV +N+ L V + + + K+ LLK
Sbjct: 68 DVPVQER---NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV 124
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ LSGGQR+R+ +AR+L P +LLDEPF +D ++ +R L
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ + H+ E L + DR +++ G + GT E+ D+
Sbjct: 185 ELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 130 bits (327), Expect = 5e-31
Identities = 73/214 (34%), Positives = 113/214 (52%), Gaps = 4/214 (1%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
DL V GEIV +LGP+GAGK+T ++ G SG I I+G D T P R +S
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERP---VSM 75
Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164
L QE ++F LTV +NI L K ++ EK+++ + + + L LSGGQR
Sbjct: 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQR 135
Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIGILITDHNVHEILT 223
+R+ +AR LV +LLDEPF+ +DP +++ L+ L R + +L+ H+ +
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAAR 195
Query: 224 LIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
+ DR + G + A G+ QE++ + LG
Sbjct: 196 IADRVVFLDNGRIAAQGSTQELLSGKASAAALLG 229
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 129 bits (326), Expect = 8e-31
Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 36/211 (17%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
L+ Y V+ + L ++ GEIVG+LGPNGAGK+T + GL+ SG I +DG D+
Sbjct: 5 LSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA 64
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
+ AR I+Y+PQ L+ +
Sbjct: 65 SLSPKELARK-IAYVPQ----------------------------------ALELLGLAH 89
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGI 209
LSGG+R+R+ +AR+L P +LLDEP + +D ++ L+R LA RG
Sbjct: 90 LADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGK 149
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
+++ H+++ DR ++ G ++A G
Sbjct: 150 TVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 129 bits (325), Expect = 1e-30
Identities = 60/234 (25%), Positives = 115/234 (49%), Gaps = 6/234 (2%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
SK ++ V V V ++ GE +GL+G +G+GK+T ++ GL+ SG
Sbjct: 287 SKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG 346
Query: 81 SIKIDGNDITKMP---MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRH 136
SI DG D+ R R+ + + +S+ +TV + + L ++ +R
Sbjct: 347 SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERR 406
Query: 137 EKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
++ LL+ + ++ LSGGQR+R+ IAR+L P ++LDEP + +D +
Sbjct: 407 ARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQA 466
Query: 196 DIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ L++DL G+ L H++ + + DR +++ G ++ G +++ +N
Sbjct: 467 QVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
Score = 127 bits (320), Expect = 3e-30
Identities = 65/243 (26%), Positives = 121/243 (49%), Gaps = 17/243 (6%)
Query: 23 DSLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI--- 75
LL +LT ++ + V V+ V V+PGEI+G++G +G+GK+T + GL+
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 76 -CADSGSIKIDGNDITKMP-MYRRARLG--ISYLPQE--ASIFRGLTVEENILAVLEV-Y 128
SG + +DG D+ + R G I+ + Q+ S+ +T+ + I L +
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 129 EKDKKKRHEKLDSLLKEFNI--TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPF 186
+ + + ++ LL++ + + R LSGG R+R+ IA +L P ++ DEP
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182
Query: 187 AGVDPVAISDIHVLIRDLAS-RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+D + I L++DL G+ +L H++ + L DR +++ G ++ G +EI
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242
Query: 246 IDN 248
+ N
Sbjct: 243 LSN 245
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 128 bits (323), Expect = 1e-30
Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 19/245 (7%)
Query: 26 LSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+ +L+K Y N +K V L + PGE V L+GP+GAGK+T + GL+ SGS+ I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 85 DGNDITKMPMY--RRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKD 131
DG DI K+ R+ R I + Q+ ++ L+V EN+L ++ ++ K+
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 132 KKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
+K ++ + L+ + + A LSGGQ++R+ IAR+L+ P IL DEP A +DP
Sbjct: 121 EK---QRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP 177
Query: 192 VAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
+ + L++ + GI ++++ H V DR + G ++ G E + ++
Sbjct: 178 ASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE-LTDEV 236
Query: 251 VRRLY 255
+ +Y
Sbjct: 237 LDEIY 241
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 127 bits (321), Expect = 3e-30
Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 2/209 (0%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
+KY V +KG+ ++ GEIVG +GPNGAGKTT +++GL+ SG +++ G K
Sbjct: 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR 88
Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
R+G+ Q+ ++ L V ++ + +Y+ + ++LD L + ++ +
Sbjct: 89 RKKFLRRIGV-VFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL 147
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGI 211
LS GQR R EIA +L+ P + LDEP G+D VA +I +++ RG +
Sbjct: 148 DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTV 207
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHG 240
L+T H + +I L R +I G +L G
Sbjct: 208 LLTSHYMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 127 bits (320), Expect = 3e-30
Identities = 72/249 (28%), Positives = 125/249 (50%), Gaps = 21/249 (8%)
Query: 23 DSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
+ ++ +L+K Y +K V+L + GE+V ++GP+GAGK+T + GL+ SG
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 82 IKIDGNDITKMP--MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY----------- 128
I +G ITK+ R+ R I + Q+ ++ L+V EN+L Y
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLF 120
Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
++DK + + L+ + I + A LSGGQ++R+ IAR+LV P IL DEP A
Sbjct: 121 SKEDKAQALDALERV----GILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVA 176
Query: 188 GVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+DP + + +++D+ GI +++ H V DR + AG ++ G E +
Sbjct: 177 SLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE-L 235
Query: 247 DNQDVRRLY 255
++ + +Y
Sbjct: 236 TDEALDEIY 244
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 126 bits (319), Expect = 4e-30
Identities = 63/208 (30%), Positives = 92/208 (44%), Gaps = 52/208 (25%)
Query: 27 SACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG 86
+L+ +Y + V L +K GEIV L+GPNG+GK+T + GL+ SG I IDG
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
DI K+P R I Y+PQ
Sbjct: 61 KDIAKLP-LEELRRRIGYVPQ--------------------------------------- 80
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
LSGGQR+R+ +AR+L+ P +LLDEP +G+DP + + L+R+LA
Sbjct: 81 ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE 128
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAG 234
G ++I H+ DR ++ G
Sbjct: 129 EGRTVIIVTHDPELAELAADRVIVLKDG 156
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 126 bits (318), Expect = 5e-30
Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 16/234 (6%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI---CADSGSI 82
L+ S K + ++KGV KPGE++ ++GP+G+GKTT + G + SG I
Sbjct: 31 LTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI 90
Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL--AVLEVYEK-DKKKRHEKL 139
++G + Y+ Q+ + LTV E + A+L + K+++ E++
Sbjct: 91 LLNGRPRDSRSFRKI----SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERV 146
Query: 140 DSLLKEFNITKWRHVLAP-----LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
+ ++ E + K L LSGG+R+R+ IA L++ PS + LDEP +G+D +
Sbjct: 147 EEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSA 206
Query: 195 SDIHVLIRDLASRGIGILITDHNV-HEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+ L++ LA G ++ T H E+ L D+ ++ G V+ G+ +E+++
Sbjct: 207 LQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 123 bits (311), Expect = 4e-29
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 10/210 (4%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGNDITKMPMYRR 97
++KGV+L VK GE+ ++GPNG+GK+T Y + G + G I DG DI ++ R
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR---HEKLDSLLKEFNITK--WR 152
AR GI Q G+T + + A + + ++L + + +
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLE 138
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
+ SGG+++R EI + L+ P +LDEP +G+D A+ + I L G G+L
Sbjct: 139 RYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVL 198
Query: 213 ITDHNVHEILTLI--DRAYIIHAGGVLAHG 240
I H +L I D+ ++++ G ++ G
Sbjct: 199 IITHY-QRLLDYIKPDKVHVLYDGRIVKSG 227
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 122 bits (309), Expect = 6e-29
Identities = 69/208 (33%), Positives = 116/208 (55%), Gaps = 6/208 (2%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
L K + +V+KG+DL VK GE+V ++GP+G+GK+T + L DSG+I IDG +T
Sbjct: 6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLT 65
Query: 91 KMP---MYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEF 146
R ++G+ + Q+ ++F LTV ENI LA ++V K + E+ LL++
Sbjct: 66 DDKKNINELRQKVGMVF--QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKV 123
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ LSGGQ++R+ IAR+L P +L DEP + +DP + ++ +++DLA
Sbjct: 124 GLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAG 234
G+ +++ H + + DR + G
Sbjct: 184 EGMTMVVVTHEMGFAREVADRVIFMDDG 211
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 123 bits (309), Expect = 7e-29
Identities = 60/234 (25%), Positives = 116/234 (49%), Gaps = 10/234 (4%)
Query: 23 DSLLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD 78
+LLS +L+ Y + + + V L ++ GE +G++G +G+GK+T ++ GL
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQ--EASIFRGLTVEENILAVLEVYEKDKKKRH 136
SGSI +DG + + + + Q +S+ TV + L + K ++
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQ- 119
Query: 137 EKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
++ LL + + + LSGGQR+R+ IAR+L+ P ++LDEP + +D +
Sbjct: 120 -RIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQA 178
Query: 196 DIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
I L+ +L RG+ L H++ + + DR ++ G ++ G +E++ +
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 121 bits (306), Expect = 1e-28
Identities = 73/242 (30%), Positives = 117/242 (48%), Gaps = 14/242 (5%)
Query: 13 PEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72
+ SK+ +L KK V V L V+ GEI ++G +G+GK+T +
Sbjct: 18 FKLLAKGKSKEEIL------KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71
Query: 73 GLICADSGSIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEV 127
LI SG + IDG DI M RR ++ + + Q ++ TV EN+ LEV
Sbjct: 72 RLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVF--QSFALLPHRTVLENVAFGLEV 129
Query: 128 YEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
+ +R E+ L+ + W H LSGG ++R+ +AR+L P +L+DE F+
Sbjct: 130 QGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189
Query: 188 GVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+DP+ ++ + L A I+ H++ E L L DR I+ G ++ GT +EI+
Sbjct: 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
Query: 247 DN 248
N
Sbjct: 250 TN 251
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 120 bits (304), Expect = 3e-28
Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 35/198 (17%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+ V V+ GEIVG+ G G G+T + GL SG I +DG +T+ R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 100 LGISYLP---QEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156
GI+Y+P + + L+V ENI L+
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENI--------------------------------ALS 102
Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216
LLSGG ++++ +AR L P ++LDEP GVD A ++I+ LIR+LA G +L+
Sbjct: 103 SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162
Query: 217 NVHEILTLIDRAYIIHAG 234
+ E+L L DR +++ G
Sbjct: 163 ELDELLGLCDRILVMYEG 180
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 119 bits (301), Expect = 6e-28
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 41/199 (20%)
Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
V+K V L +KPGE V ++GP+G+GK+T ++ L SG I IDG D+ + +
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLE 72
Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
+ I+Y+PQ+ +F G T+ ENI
Sbjct: 73 SLRKN-IAYVPQDPFLFSG-TIRENI---------------------------------- 96
Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
LSGGQR+R+ IAR+L+ P ++LDE + +DP + I +R LA I+I
Sbjct: 97 ---LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA- 152
Query: 216 HNVHEILTLIDRAYIIHAG 234
H + I DR ++ G
Sbjct: 153 HRLSTIR-DADRIIVLDDG 170
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 118 bits (296), Expect = 2e-27
Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 15/223 (6%)
Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM-Y 95
V ++KGV L + G+ V L+GP+G+GK+T ++ SG + IDG DI + + +
Sbjct: 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424
Query: 96 RRARLGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKKKR--HEKLDSLLKEFNI 148
R+++G+ + QE +F T+ ENI A E E+ K H+ + L ++
Sbjct: 425 LRSQIGL--VSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDT 481
Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRG 208
LSGGQ++R+ IAR+LV P +LLDE + +D + + + D AS+G
Sbjct: 482 LVGER--GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEAL-DKASKG 538
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
++ H + I D+ ++ G ++ GT E+I +
Sbjct: 539 RTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGGI 580
Score = 82.2 bits (203), Expect = 1e-16
Identities = 61/225 (27%), Positives = 106/225 (47%), Gaps = 31/225 (13%)
Query: 38 VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRR 97
V V+ + L ++ G+ V L+GP+G+GK+T ++ D+G +KIDG DI + + +
Sbjct: 1003 VPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL-KW 1061
Query: 98 ARLGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKKKR-H-------EKLDSLL 143
R I + QE +F G T+ ENI + E+ E K H + D+ +
Sbjct: 1062 LRKQIGLVSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRV 1120
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
E + LSGGQ++R+ IAR+++ P +LLDE + +D + + +
Sbjct: 1121 GERGV---------QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDR 1171
Query: 204 LASRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEII 246
I+I H + T+ D ++ G V+ GT E++
Sbjct: 1172 AMEGRTTIVIA----HRLSTIQNADVIAVLKNGKVVEQGTHDELL 1212
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 117 bits (294), Expect = 3e-27
Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 27/238 (11%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
S + V++ + L + PGE V ++G +G+GK+T ++ GL G I +D
Sbjct: 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR-------HE- 137
G D+ + + R + Y+ Q+ +F G ++ ENI ++ HE
Sbjct: 534 GVDLNDIDLASLRRQ-VGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEF 591
Query: 138 ------KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
D+ + E LSGGQR+RL +AR+L+S P +LLDE + +DP
Sbjct: 592 IENLPMGYDTPVGEGGAN---------LSGGQRQRLALARALLSKPKILLLDEATSALDP 642
Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
+ I + + I+I + DR ++ G ++ G+ +E++
Sbjct: 643 ETEAIILQNLLQILQGRTVIIIAHR--LSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 117 bits (295), Expect = 4e-27
Identities = 61/214 (28%), Positives = 93/214 (43%), Gaps = 36/214 (16%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL--ICADSGSIKIDGND 88
L ++KGV+L +K GE+ L+GPNG+GK+T + G G I G D
Sbjct: 6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGED 65
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148
IT +P RARLGI Q G+ + L+ N
Sbjct: 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNAD----------------------FLRYVNE 103
Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRG 208
SGG+++R EI + L+ P +LDEP +G+D A+ + +I L G
Sbjct: 104 G---------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG 154
Query: 209 IGILITDHNVHEILTLI--DRAYIIHAGGVLAHG 240
+LI H +L I DR ++++ G ++ G
Sbjct: 155 KSVLIITHY-QRLLDYIKPDRVHVLYDGRIVKSG 187
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 117 bits (294), Expect = 4e-27
Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 10/217 (4%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
++TK++ +V + ++L + GE V LLGP+G GKTT M+ GL SG I I G D+
Sbjct: 5 NVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV 64
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
T +P R I+ + Q +++ +TV +NI L++ + K + E++ + + I
Sbjct: 65 TDLPPKDR---DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE 121
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
LSGGQR+R+ + R++V P L+DEP + +D + ++ L R G
Sbjct: 122 HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLG 181
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+ H+ E +T+ DR V+ G +Q+I
Sbjct: 182 TTTIYVTHDQVEAMTMADRI------AVMNDGQIQQI 212
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 116 bits (293), Expect = 5e-27
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 4/197 (2%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
DL GEI ++GP+G+GK+T ++ G SG + I+G D+T P R +S
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP---VSM 74
Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164
L QE ++F LTVE+N+ L K + + ++ L + L LSGG+R
Sbjct: 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGER 134
Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILT 223
+R+ +AR LV +LLDEPFA +DP +++ L+ DL A + +L+ H +
Sbjct: 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194
Query: 224 LIDRAYIIHAGGVLAHG 240
L R + G + A G
Sbjct: 195 LAQRVVFLDNGRIAAQG 211
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 116 bits (292), Expect = 5e-27
Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 8/222 (3%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
KK V V L V+ GEI ++G +G+GK+T ++ LI G I +DG DI K+
Sbjct: 36 KKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKL 95
Query: 93 PM-----YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147
RR ++ + + Q ++ TV EN+ LEV K +R E+ L+
Sbjct: 96 SAAELRELRRKKISMVF--QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVG 153
Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
+ + LSGG ++R+ +AR+L + P +L+DE F+ +DP+ +++ + +L ++
Sbjct: 154 LEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 208 -GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
I+ H++ E L + DR I+ G ++ GT +EI+ N
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLN 255
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 115 bits (291), Expect = 1e-26
Identities = 56/214 (26%), Positives = 93/214 (43%), Gaps = 51/214 (23%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L +TK++ V + GV L V+ GE+ LLG NGAGK+T +++GL DSG I +D
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G +++ R GI+ + Q
Sbjct: 61 GKEVSFASPRDARRAGIAMVYQ-------------------------------------- 82
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
LS G+R+ +EIAR+L ++LDEP A + P + + +IR L
Sbjct: 83 -------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAH 239
++G+ ++ H + E+ + DR ++ G V+
Sbjct: 130 AQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 115 bits (290), Expect = 1e-26
Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 12/217 (5%)
Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD---SGSIKIDGND 88
++ V L+V+ G+++ +LG +G+GKTT ++G + SG I +G
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENIL--AVLEVYEKDKKKRHEKL--DSLLK 144
+ ++Y+ Q+ + GLTV E + A+L + K +K D LL+
Sbjct: 74 RKPDQFQKC----VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLR 129
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ +T+ L +SGG+RRR+ IA L+ P ++LDEP +G+D ++ + L
Sbjct: 130 DLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQL 189
Query: 205 ASRGIGILITDHNVH-EILTLIDRAYIIHAGGVLAHG 240
A R +++T H ++ L DR ++ +G ++ G
Sbjct: 190 ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 115 bits (289), Expect = 1e-26
Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 9/209 (4%)
Query: 32 TKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
+K Y ++ V ++ GE V L GP+GAGK+T ++ G G I ++G+D++
Sbjct: 8 SKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS 67
Query: 91 KM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
++ P RR ++G+ + Q+ + TV EN+ L V K ++ ++ +L
Sbjct: 68 RLKGREIPFLRR-QIGVVF--QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDL 124
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ L LSGG+++R+ IAR++V+ P+ +L DEP +DP +I L ++
Sbjct: 125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG 234
G +L+ H++ + + R + G
Sbjct: 185 RLGTTVLMATHDLELVNRMRHRVLALEDG 213
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 113 bits (285), Expect = 4e-26
Identities = 64/239 (26%), Positives = 120/239 (50%), Gaps = 9/239 (3%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
++ A +L+ ++ GV L ++PGE++ +LGPNGAGK+T ++G + DSG + +
Sbjct: 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSL 142
+G + P AR + LPQ +S+ TV+E + + + ++
Sbjct: 61 NGVPLNSWPPEELARH-RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQA 119
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSL------VSFPSYILLDEPFAGVDPVAISD 196
L +++ LSGG+++R+++AR L V ++ LDEP + +D
Sbjct: 120 LAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHH 179
Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
L R LA G +L H+++ DR ++H G V+A G+ Q+++ ++ + R+Y
Sbjct: 180 TLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVY 238
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 113 bits (284), Expect = 5e-26
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 2/213 (0%)
Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP 93
K S+ V+ + + GEIVG LG NGAGK+T M+TGL+ SG ++++G D +
Sbjct: 33 KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRR 92
Query: 94 MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
+G+ + Q+ ++ L +++ + +YE + E+LD L + ++ +
Sbjct: 93 EEYLRSIGLV-MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK 151
Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGIL 212
LS GQR R E+A +L+ P + LDEP G+D A ++I +++ R +L
Sbjct: 152 WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
+T H +I TL DR +I G ++ GT+ ++
Sbjct: 212 LTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 113 bits (283), Expect = 7e-26
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 7/210 (3%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+S SL+ + ++ V L + GE+V +LGP+G GKTT ++ G + GSI+++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
G I P R G+ + Q ++ L V +N+ L++ +K +R E +L
Sbjct: 66 GRRIEG-PGAER---GVVF--QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLAL 119
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ H LSGG R+R+ IAR+L P +LLDEPF +D + + L+ DL
Sbjct: 120 VGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLW 179
Query: 206 SR-GIGILITDHNVHEILTLIDRAYIIHAG 234
G +L+ H++ E L L R ++ G
Sbjct: 180 QETGKQVLLITHDIEEALFLATRLVVLSPG 209
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 112 bits (283), Expect = 7e-26
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKI 84
S V V GV +K GEI+G++G +G+GK+ + GL+ G I
Sbjct: 10 SFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILF 69
Query: 85 DGNDITKMPMYRRARL---GISYLPQEA--SIFRGLTVEENILAVLEVYEK--DKKKRHE 137
DG D+ + ++ I+ + Q+ S+ +T+ + I VL ++ K KK+ E
Sbjct: 70 DGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE 129
Query: 138 KLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
+ LL+ I L LSGG R+R+ IA +L P ++ DEP +D
Sbjct: 130 RAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 195 SDIHVLIRDLAS-RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ I L+++L +G +++ H++ + + DR +++AG ++ G V+EI N
Sbjct: 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKN 244
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 111 bits (280), Expect = 1e-25
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 12/201 (5%)
Query: 47 YVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRRARL 100
+ E+ G+ G +GAGK+T + GL D G+I ++G D K +P +R
Sbjct: 19 FDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR--- 75
Query: 101 GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLS 160
I + Q+ ++F L V EN+ L+ + + +D LL + + LS
Sbjct: 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDR--ISVDELLDLLGLDHLLNRYPAQLS 133
Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVH 219
GG+++R+ +AR+L + P +LLDEPF+ +D + ++ + I ++ H++
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193
Query: 220 EILTLIDRAYIIHAGGVLAHG 240
E L DR ++ G + G
Sbjct: 194 EAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 111 bits (278), Expect = 3e-25
Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 36/204 (17%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI--CADSGSIKIDGNDITKMPMYRR 97
++K V KPGE+ ++GP+GAGK+T + G SG + I+G + K +
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
I Y+PQ+ + LTV E ++ + L+
Sbjct: 84 ----IGYVPQDDILHPTLTVRETLMFAAK----------------LRG------------ 111
Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217
LSGG+R+R+ IA LVS PS + LDEP +G+D + + L+R LA G I+ + H
Sbjct: 112 -LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170
Query: 218 V-HEILTLIDRAYIIHAGGVLAHG 240
EI L D+ ++ G V+ G
Sbjct: 171 PSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 110 bits (276), Expect = 4e-25
Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 9/198 (4%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++ + L + GEI+ L G NGAGKTT ++ GLI SGSI ++G I +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-- 72
Query: 100 LGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158
I Y+ Q+ +V E +L L K+ +E+ +++LK+ ++ +
Sbjct: 73 --IGYVMQDVDYQLFTDSVREELLLGL----KELDAGNEQAETVLKDLDLYALKERHPLS 126
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218
LSGGQ++RL IA +L+S ++ DEP +G+D + + LIR+LA++G +++ H+
Sbjct: 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY 186
Query: 219 HEILTLIDRAYIIHAGGV 236
+ + DR ++ G +
Sbjct: 187 EFLAKVCDRVLLLANGAI 204
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 109 bits (274), Expect = 8e-25
Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 4/228 (1%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
++K Y + V+ V L + G I ++GPNGAGK+T MM+ L+ DSG I IDG ++T
Sbjct: 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELT 66
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK--KKRHEKLDSLLKEFNI 148
P A+ +S L QE I LTV + + Y + + K+ ++ ++ ++
Sbjct: 67 STPSKELAKK-LSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHL 125
Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR- 207
LSGGQR+R IA L Y+LLDEP +D I ++R LA
Sbjct: 126 EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
G I++ H+++ D + G V+ G+ EII + + +Y
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 107 bits (269), Expect = 4e-24
Identities = 69/256 (26%), Positives = 122/256 (47%), Gaps = 22/256 (8%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI-- 75
K + L Y + +K ++L + ++ L+GP+G GK+T M LI
Sbjct: 3 MKIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG 62
Query: 76 CADSGSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK 132
G + +DG +I + R R+G+ + Q+ + F +++ +N+ L ++
Sbjct: 63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF--QKPNPF-PMSIYDNVAYGLRLHGIKD 119
Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPF 186
K+ E ++S LK+ + W V L LSGGQ++RL IAR+L P +L+DEP
Sbjct: 120 KELDEIVESSLKKAAL--WDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 187 AGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
+ +DP++ I LI +L + I+I HN+ + + D + G ++ G +I
Sbjct: 178 SALDPISTLKIEELITELKKK-YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236
Query: 247 DNQDVRRL--YLGDRF 260
N +R Y+ RF
Sbjct: 237 TNPKHKRTEDYISGRF 252
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 106 bits (267), Expect = 5e-24
Identities = 63/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L L K+Y V+KGV L G+++ ++G +G+GK+TF + L +GSI+++
Sbjct: 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN 66
Query: 86 GNDITKMP------------MYRRARLGISYLPQEASIFRGLTVEENIL-AVLEVYEKDK 132
G +I +R R + + Q +++ +TV EN++ A + V K
Sbjct: 67 GEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSK 126
Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
+ E+ + L + I + LSGGQ++R+ IAR+L P +L DEP + +DP
Sbjct: 127 AEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE 186
Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
+ ++ +++DLA G +++ H + + +H G + G +++ N
Sbjct: 187 LVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSP 246
Query: 253 RL 254
RL
Sbjct: 247 RL 248
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 105 bits (264), Expect = 1e-23
Identities = 53/193 (27%), Positives = 105/193 (54%), Gaps = 9/193 (4%)
Query: 31 LTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
+TK Y N + G+++ + GE V L+GP+GAGK+T ++ SG+I+++G D+
Sbjct: 6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDV 65
Query: 90 TKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
+ + P RR ++G+ + Q+ + V EN+ LEV ++ +++ + L+
Sbjct: 66 SDLRGRAIPYLRR-KIGVVF--QDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALE 122
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
++ L LSGG+++R+ IAR++V+ P+ ++ DEP +DP +I L++ +
Sbjct: 123 LVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI 182
Query: 205 ASRGIGILITDHN 217
G +++ H
Sbjct: 183 NKAGTTVVVATHA 195
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 105 bits (263), Expect = 1e-23
Identities = 60/230 (26%), Positives = 103/230 (44%), Gaps = 9/230 (3%)
Query: 22 KDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
+ L+ +++ + N ++ + V PGE ++GPNGAGKTT ++TG SG
Sbjct: 28 NEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD 87
Query: 82 IKIDGNDITKMPMYR--RARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKD-KKK 134
+ + G K R R+G+ TV + +L A + +Y++D +
Sbjct: 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAE 147
Query: 135 RHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
LL+ LS G++RR+ IAR+LV P ++LDEP G+D +A
Sbjct: 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 195 SDIHVLIRDLASR--GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTV 242
+ + +LA+ +L H+ EI ++ G V+A G +
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 105 bits (263), Expect = 2e-23
Identities = 71/258 (27%), Positives = 125/258 (48%), Gaps = 16/258 (6%)
Query: 11 EMPEFQENRASKDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFF 68
E+ E A+ L +++ Y +K +L + GE V +LG +G+GK+T
Sbjct: 322 EVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL 381
Query: 69 YMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEV 127
++ G GSI ++G +I + + R IS L Q +F G T+ +N+ LA +
Sbjct: 382 QLLAGAWDPQQGSITLNGVEIASLDE-QALRETISVLTQRVHLFSG-TLRDNLRLANPDA 439
Query: 128 YEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181
+++ +++ L++ + + L LSGG+RRRL +AR+L+ L
Sbjct: 440 SDEELWAALQQVG--LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497
Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
LDEP G+DP+ + L+ + A G +L+ H + L +DR ++ G ++ GT
Sbjct: 498 LDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRG-LERMDRIIVLDNGKIIEEGT 555
Query: 242 VQEIIDNQD-VRRLYLGD 258
E++ N +RLY D
Sbjct: 556 HAELLANNGRYKRLYQLD 573
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 104 bits (262), Expect = 2e-23
Identities = 64/220 (29%), Positives = 116/220 (52%), Gaps = 22/220 (10%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
++KG+ ++ GE +G++GP+G+GK+T ++ G+ SGS+++DG D+ + + R
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ---WDRE 406
Query: 99 RLG--ISYLPQEASIFRGLTVEENILAVLE------VYEKDKKKR-HEKLDSLLKEFNIT 149
+LG I YLPQ+ +F G T+ ENI E V E + HE + L + ++
Sbjct: 407 QLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT- 464
Query: 150 KWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
+ LSGGQR+R+ +AR+L P ++LDEP + +D + + I +
Sbjct: 465 ----RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA 520
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
RG +++ H L +D+ ++ G + A G +E++
Sbjct: 521 RGGTVVVIAHRP-SALASVDKILVLQDGRIAAFGPREEVL 559
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 103 bits (259), Expect = 5e-23
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 65 TTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAV 124
+T ++TGL+ SG+I +DG D T + + R I + Q+ +F LTV EN+
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLF-- 58
Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLD 183
+ K+ + + L+ + + LSGGQ++R+ IAR+L+ P +LLD
Sbjct: 59 ---FGLRDKEADARAEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 184 EPFA 187
EP A
Sbjct: 116 EPTA 119
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 103 bits (258), Expect = 6e-23
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 8/221 (3%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+ ++L +K G++ L+G +GAGK+T ++ G + G I+++G D+ + R
Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP-EAWR 394
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL---- 155
IS++ Q +F G T+ ENIL ++ LL+ +
Sbjct: 395 KQISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEG 453
Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
LSGGQ +RL +AR+L+S S +LLDEP A +D I +++LA + ++IT
Sbjct: 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVIT- 512
Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYL 256
H + + DR ++ G ++ GT +E+ + Q + L
Sbjct: 513 HRLEDAADA-DRIVVLDNGRLVEQGTHEELSEKQGLYANLL 552
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 102 bits (256), Expect = 9e-23
Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 47/237 (19%)
Query: 22 KDSLLSACSLTKKYNS---------VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72
+ LL +L K + V V GV +K GE +GL+G +G GK+T ++
Sbjct: 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL 60
Query: 73 GLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK 132
GL SG I +G DITK+ R E +L +LE
Sbjct: 61 GLEEPTSGEILFEGKDITKLSKEER--------------------RERVLELLEKVG--- 97
Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
L E + ++ H LSGGQR+R+ IAR+L P I+ DEP + +D
Sbjct: 98 ----------LPEEFLYRYPH----ELSGGQRQRIGIARALALNPKLIVADEPVSALDVS 143
Query: 193 AISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+ I L++DL G+ L H++ + + DR +++ G ++ G +E+ N
Sbjct: 144 VQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 102 bits (255), Expect = 1e-22
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 15/229 (6%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
L + + + V G+ L ++ G+ +GL+G +G+GK+T + LI G I+ DG DI
Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDID 351
Query: 91 -----KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLL 143
+M RR R+ + + S+ +TV + I L V+E +R +++ L
Sbjct: 352 GLSRKEMRPLRR-RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 144 KEFNI---TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
+E + T+ R+ SGGQR+R+ IAR+L+ P ILLDEP + +D + + L
Sbjct: 411 EEVGLDPATRNRY--PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468
Query: 201 IRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
+RDL G+ L H++ + L R ++ G ++ G + + N
Sbjct: 469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFAN 517
Score = 88.0 bits (218), Expect = 2e-18
Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 19/248 (7%)
Query: 21 SKDSLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI- 75
LLS +L+ ++ V VKG+ ++ GE + L+G +G+GK+ + GL+
Sbjct: 2 MTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP 61
Query: 76 ----CADSGSIKIDGNDITKMPMYRRARLG---ISYLPQEA--SIFRGLTVEENILAVLE 126
SGSI DG D+ + + I + QE S+ T+ + + VL
Sbjct: 62 SPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLR 121
Query: 127 VYEK-DKKKRHEKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILL 182
++ + + LL+ I + L LSGGQR+R+ IA +L + P ++
Sbjct: 122 LHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIA 181
Query: 183 DEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
DEP +D + I L+++L + G+ IL H++ + DR Y++ G ++ GT
Sbjct: 182 DEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241
Query: 242 VQEIIDNQ 249
+ +
Sbjct: 242 TETLFAAP 249
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 102 bits (255), Expect = 1e-22
Identities = 64/215 (29%), Positives = 106/215 (49%), Gaps = 27/215 (12%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+ V L ++ GE V ++G G+GK+T ++ GL SGS+ +DG DI ++ R
Sbjct: 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-ADLR 77
Query: 100 LGISYLPQEASIFRGLTVEENIL---------AVLEVYE----KDKKKRHEK-LDSLLKE 145
I Y+PQ+ ++F G T+ +NI +L E D +H LD + E
Sbjct: 78 RNIGYVPQDVTLFYG-TLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGE 136
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
LSGGQR+ + +AR+L++ P +LLDEP + +D + + +R L
Sbjct: 137 RGRG---------LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL 187
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
I+IT +L L+DR ++ +G ++A G
Sbjct: 188 GDKTLIIITHRPS--LLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 101 bits (254), Expect = 1e-22
Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+L A +L+ + + + + GE + + GPNGAGKTT ++ GL+ D+G +
Sbjct: 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
G I + + YL + I LT EN+ + + L
Sbjct: 62 QGEPIQNVR--ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNA---ATIWEALA 116
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ + + LS GQ+RR+ +AR +S +LDEPF +D ++ + L+
Sbjct: 117 QVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
Query: 205 ASRGIGILITDH 216
A++G +L+T H
Sbjct: 177 AAQGGIVLLTTH 188
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 101 bits (254), Expect = 2e-22
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 44/214 (20%)
Query: 26 LSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
L +++ +Y V++ V ++PGE + ++GP+G+GK+T ++ GL+ SG ++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 84 IDGNDITKM-PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
+DG DI++ P +G YLPQ+ +F G ++ ENI
Sbjct: 61 LDGADISQWDPNELGDHVG--YLPQDDELFSG-SIAENI--------------------- 96
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
LSGGQR+RL +AR+L P ++LDEP + +D ++ I
Sbjct: 97 ----------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
L + G ++ H E L DR ++ G V
Sbjct: 141 ALKAAGATRIVIAHRP-ETLASADRILVLEDGRV 173
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 101 bits (253), Expect = 2e-22
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRRARLGISYLP 106
I L GP+G+GKT+ M+ GL D G I+++G D K +P +R I Y+
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRR---IGYVF 82
Query: 107 QEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRR 166
Q+A +F TV N+ + K + D L+ I LSGG+++R
Sbjct: 83 QDARLFPHYTVRGNLRYGM------WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQR 136
Query: 167 LEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLI 225
+ I R+L++ P +L+DEP A +D +I + L I IL H++ E+L L
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196
Query: 226 DRAYIIHAGGVLAHGTVQEIIDNQDVR 252
DR ++ G V A G ++E+ + D
Sbjct: 197 DRVVVLENGKVKASGPLEEVWGSPDFP 223
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 101 bits (253), Expect = 2e-22
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 12/227 (5%)
Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
V+K + ++PGE V ++GP+G+GK+T ++ L SG I IDG DI +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS-L 398
Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
R I + Q+ +F G T+ ENI ++ + KL + EF
Sbjct: 399 DSLRKRIGIVSQDPLLFSG-TIRENIALGRPDATDEEIEEALKL-ANAHEFIANLPDGYD 456
Query: 156 APL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
+ LSGGQR+RL IAR+L+ P ++LDE + +D + I ++ L
Sbjct: 457 TIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRT 516
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV-RRLY 255
++I H + I DR ++ G ++ GT +E++ + RLY
Sbjct: 517 TLIIA-HRLSTIKNA-DRIIVLDNGRIVERGTHEELLAKGGLYARLY 561
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 99.3 bits (247), Expect = 1e-21
Identities = 53/201 (26%), Positives = 102/201 (50%), Gaps = 8/201 (3%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD---SGS 81
+L +++ + ++ V+ + GEIV L+GP+G GK+T M G + +G
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS 141
+ ++ + +P +R ++GI L Q+A +F L+V +N+L L K +R ++
Sbjct: 62 LWLNEQRLDMLPAAQR-QIGI--LFQDALLFPHLSVGQNLLFALPATLKGNARR-NAANA 117
Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
L+ + H LSGGQR R+ + R+L++ P +LLDEPF+ +D +
Sbjct: 118 ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWV 177
Query: 202 -RDLASRGIGILITDHNVHEI 221
++ + GI + H++ ++
Sbjct: 178 FSEVRAAGIPTVQVTHDLQDV 198
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 98.3 bits (245), Expect = 2e-21
Identities = 62/220 (28%), Positives = 100/220 (45%), Gaps = 23/220 (10%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+K ++ +KPGE V ++GP GAGKTT ++ G I IDG DI + R
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK-SLR 76
Query: 100 LGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKK--KRHEKLDSLLKEFNITKWR 152
I + Q+ +F G T+ ENI A E + K H+ + L ++
Sbjct: 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYD----- 130
Query: 153 HVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
VL LS G+R+ L IAR+++ P ++LDE + +D I + L
Sbjct: 131 TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRT 190
Query: 210 GILITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEIID 247
I+I H + T+ D+ ++ G ++ GT E++
Sbjct: 191 SIIIA----HRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 97.3 bits (242), Expect = 4e-21
Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 28/229 (12%)
Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
N V+KG+ +KPGE VG++G GAGK++ + L+ G I IDG DI+K+ ++
Sbjct: 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLH 1210
Query: 96 R-RARLGISYLPQEASIFRGLTVEENI------------LAVLEVYEKDK-KKRHEKLDS 141
R+RL I +PQ+ +F G TV N+ A+ KD LDS
Sbjct: 1211 DLRSRLSI--IPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDS 1267
Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
+ E + S GQR+ L +AR+L+ ++LDE A VDP + I I
Sbjct: 1268 EVSE-GGENF--------SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 1318
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
R+ + +L H ++ ++ DR ++ AG V+ + E++ ++D
Sbjct: 1319 RE-EFKDCTVLTIAHRLNTVMDS-DRVLVLDAGRVVEFDSPAELLSDKD 1365
Score = 93.8 bits (233), Expect = 5e-20
Identities = 65/268 (24%), Positives = 118/268 (44%), Gaps = 45/268 (16%)
Query: 1 MKSIRNYLGIEMPEFQENRASKDSLLSAC------SLT-KKYNSVYVVKGVDLYVKPGEI 53
+K ++ +L E + S D S + + +K ++ +K G++
Sbjct: 490 LKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQL 549
Query: 54 VGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFR 113
V ++GP G+GK++ + G + SGS+ ++G ++Y+PQ+ I
Sbjct: 550 VAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--------------SVAYVPQQPWIQN 595
Query: 114 GLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------------LSG 161
G TV ENIL Y++++ + K +L K+ I P LSG
Sbjct: 596 G-TVRENILFGSP-YDEERYDKVIKACALKKDLEIL-------PFGDLTEIGERGINLSG 646
Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASRGIGILITDHNVHE 220
GQ++R+ +AR++ LLD+P + VD V IR L IL+T H +
Sbjct: 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVT-HQLQ- 704
Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
L D+ ++ G ++ GT +E++ +
Sbjct: 705 FLPHADQIIVLKDGKIVESGTYEELLKS 732
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 97.1 bits (242), Expect = 4e-21
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 34/229 (14%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
SL + N V+K + +KPGE VG++G G+GK++ + L+ SGSI IDG DI
Sbjct: 9 SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI 68
Query: 90 TKMPMYR-RARLGISYLPQEASIFRGLTVEENI--------LAVLEVYEKDKKKRH---- 136
+K+ ++ R+R+ I +PQ+ +F G T+ N+ + + E+ K
Sbjct: 69 SKIGLHDLRSRISI--IPQDPVLFSG-TIRSNLDPFGEYSDEELWQALERVGLKEFVESL 125
Query: 137 -EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
LD++++E LS GQR+ L +AR+L+ ++LDE A VDP +
Sbjct: 126 PGGLDTVVEEGGEN---------LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
I IR+ A + +L H + T+ID I+ VL G V E
Sbjct: 177 LIQKTIRE-AFKDCTVLTIAHRLD---TIIDSDRIL----VLDKGRVVE 217
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 97.0 bits (241), Expect = 4e-21
Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 12/220 (5%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN--D 88
+ Y + + + L GE + LLGP+GAGK++ ++ L SG++ I GN D
Sbjct: 8 INCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFD 67
Query: 89 ITKMP---MYRRARLGISYLPQEASIFRGLTVEENILA----VLEVYEKDKKKRHEKLDS 141
+K P R R + + Q+ +++ LTV+EN++ VL + + R EKL
Sbjct: 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKL-- 125
Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
LK + + LSGGQ++R+ IAR+L+ P +L DEP A +DP + I +I
Sbjct: 126 -LKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
++LA GI +I H V R + G ++ G
Sbjct: 185 KELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 96.9 bits (241), Expect = 5e-21
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 44/225 (19%)
Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
S+++ +L+ Y +++ V L + PGE +GL+G NGAGK+T ++ G + DSG +
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL--------------AVLEVYE 129
L + YL QE + TV + ++ +
Sbjct: 62 RPKG------------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 130 KDKKKRHEKLDSLLKEFNITKWRH----VLAPL-----------LSGGQRRRLEIARSLV 174
+ +L++LL+E + L L LSGG RRR+ +AR+L+
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 175 SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
P +LLDEP +D +I L L +++ H+ +
Sbjct: 170 EEPDLLLLDEPTNHLDLESIE---WLEDYLKRYPGTVIVVSHDRY 211
Score = 91.5 bits (227), Expect = 2e-19
Identities = 49/237 (20%), Positives = 104/237 (43%), Gaps = 24/237 (10%)
Query: 19 RASKDSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77
+ +L +++K Y ++K + + G+ + ++GPNGAGK+T ++ G +
Sbjct: 315 KRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP 374
Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
SG++K+ + I Y Q L ++ +L L D ++
Sbjct: 375 LSGTVKV------------GETVKIGYFDQHRD---ELDPDKTVLEELSEGFPDGDEQE- 418
Query: 138 KLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
+ + L F T P+ LSGG++ RL +A+ L+ P+ +LLDEP +D ++
Sbjct: 419 -VRAYLGRFGFTG-EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
+ + D +L+ H+ + + + R +++ G ++ ++ + R
Sbjct: 477 ALEEALLDFEG---TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 93.8 bits (233), Expect = 4e-20
Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 12/209 (5%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+ G+ L + G+ V ++G NGAGK+T + G + SG I IDG D+TK + +RA
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80
Query: 100 LGISYLPQ--EASIFRGLTVEENILAVLEVYEKD------KKKRHEKLDSLLKEFNITKW 151
L ++ + Q A LT+EEN+ +K ++R L +
Sbjct: 81 L-LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 152 RHVLAP--LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASRG 208
+ LLSGGQR+ L + + + P +LLDE A +DP A + + + +
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHK 199
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVL 237
+ L+ HN+ + L +R ++H+G ++
Sbjct: 200 LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 92.9 bits (231), Expect = 9e-20
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 25/228 (10%)
Query: 19 RASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD 78
+S L + + +K V V GE +GL+G NGAGK+T ++ G+ D
Sbjct: 16 GSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD 75
Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRG-LTVEENILAVLEVYEKDKKKRHE 137
SG++ + G +S L F LT ENI + +K+ E
Sbjct: 76 SGTVTVRGR--------------VSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDE 121
Query: 138 KLD-----SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
K+D S L +F + S G + RL A + P +L+DE A D
Sbjct: 122 KIDEIIEFSELGDFIDLPVKT-----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
+R+L +G +++ H+ I L DRA ++ G + G
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 92.6 bits (230), Expect = 1e-19
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 13/229 (5%)
Query: 19 RASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD 78
+ K L +K + +K + + GE VG++G NGAGK+T ++ G+
Sbjct: 21 YSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT 80
Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
SG +K+ G + P+ LG + P+ LT ENI + +K+ EK
Sbjct: 81 SGKVKVTG-KVA--PLI---ELGAGFDPE-------LTGRENIYLRGLILGLTRKEIDEK 127
Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
+D +++ + + S G RL + + P +LLDE A D
Sbjct: 128 VDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187
Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
+ +L + I++ H++ I DRA + G + G+ +E+I
Sbjct: 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 91.0 bits (226), Expect = 3e-19
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 17/217 (7%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK--MPMYRR 97
V+K V + G+ V ++GP+G+GK+T ++ SGSI IDG DI + + RR
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 98 ARLGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKKKR-HEKLDSLLKEFNITK 150
A I +PQ+ +F T+ NI EV E K + H+K+ ++
Sbjct: 76 A---IGVVPQDTVLFND-TIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
L LSGG+++R+ IAR+++ P +LLDE + +D +I +RD++
Sbjct: 132 GERGL--KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTT 189
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
I+I H + I+ D+ ++ G ++ GT +E++
Sbjct: 190 IVIA-HRLSTIVN-ADKIIVLKDGRIVERGTHEELLA 224
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 91.0 bits (226), Expect = 3e-19
Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 13/219 (5%)
Query: 38 VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRR 97
V ++KG+ L + PG+ V L+G +G GK+T ++ SG I +DG DI + + R
Sbjct: 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL-RW 74
Query: 98 ARLGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKKKR--HEKLDSLLKEFNITK 150
R I + QE +F G T+ ENI A E E+ KK H+ + SL ++
Sbjct: 75 LRSQIGLVSQEPVLFDG-TIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLV 133
Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
LSGGQ++R+ IAR+L+ P +LLDE + +D + + + D A +G
Sbjct: 134 GER--GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL-DRAMKGRT 190
Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
++ H + I D ++ G V+ GT E++ +
Sbjct: 191 TIVIAHRLSTIRN-ADLIAVLQNGQVVEQGTHDELMAQK 228
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 90.4 bits (224), Expect = 4e-19
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 10/192 (5%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
L A LT + + + G+ + GE + + GPNG+GKTT ++ GL +G + ++
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60
Query: 86 GN-DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
G + R G+ YL I L+V EN L + D E+++ L
Sbjct: 61 GGPLDFQRDSIAR---GLLYLGHAPGIKTTLSVLEN----LRFWHADHSD--EQVEEALA 111
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ + LS GQ+RR+ +AR L+S +LDEP +D ++ +
Sbjct: 112 RVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171
Query: 205 ASRGIGILITDH 216
+RG +++T H
Sbjct: 172 CARGGMVVLTTH 183
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 90.3 bits (224), Expect = 5e-19
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+KGV + GE V ++G NG+GK+T ++ SGSI IDG DI ++ + R
Sbjct: 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-DYSGSILIDGQDIKEVSL-ESLR 424
Query: 100 LGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKK-KRHEKLDSLLKEFNITKWR 152
I +PQ++ +F T+ NI + EV E K+ H+ + L +
Sbjct: 425 QSIGVVPQDSVLFND-TILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGE 483
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
L LSGG+++R+ +AR+ + +LLDE + +D +I +I D+ S I+
Sbjct: 484 RGLM--LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIM 541
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII-DNQDVRRLYLG 257
I H ++L D+ ++ G V +GT E++ ++ L+
Sbjct: 542 IV-HR-LDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 90.4 bits (224), Expect = 5e-19
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 25/227 (11%)
Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMY 95
V V+K + ++PGE+V L+GP+G+GK+T ++ SG I +DG I+ + Y
Sbjct: 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKY 539
Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLLKEFNITKWR 152
R + I + QE +F G ++ ENI L+ ++ + K+ + F +
Sbjct: 540 LRRK--IGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFP-DGYN 595
Query: 153 HVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDLAS 206
V+ LSGGQ++R+ IAR+L+ P ++LDE + +D A S+ V L R +
Sbjct: 596 TVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALD--AESEYLVQEALDRLMQG 653
Query: 207 RGIGILITDHNVHEILTLIDRA---YIIHAGGVLAHGTVQEIIDNQD 250
R + ++I L+ + A +I G V+ GT E++ +
Sbjct: 654 RTV-LVIAHR-----LSTVRHADQIVVIDKGRVVEMGTHDELLSKPN 694
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 87.8 bits (217), Expect = 3e-18
Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 14/215 (6%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
V+ GEI+ L+GPNGAGK+T M G+ SGSI+ G + AR +YL Q
Sbjct: 22 VRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHR-AYLSQ 79
Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRL 167
+ + + V L +++ DK R E L+ + + LSGG+ +R+
Sbjct: 80 QQTPPFAMPV----WHYLTLHQPDKT-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 134
Query: 168 EIARSLVSF-----PS--YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220
+A ++ P+ +LLDEP +D S + L+ L +G+ I+++ H+++
Sbjct: 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH 194
Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
L RA+++ G +LA G +E++ + + Y
Sbjct: 195 TLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY 229
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 87.4 bits (217), Expect = 3e-18
Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 39/217 (17%)
Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK 91
+ + + + +K ++L V GE+V ++GP G+GK++ + G + SGS+ + G
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----- 66
Query: 92 MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW 151
I+Y+ QE I G T+ ENIL + +++++ ++ K +L + I
Sbjct: 67 ---------SIAYVSQEPWIQNG-TIRENIL-FGKPFDEERYEKVIKACALEPDLEIL-- 113
Query: 152 RHVLAPL------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI-- 197
P LSGGQ++R+ +AR++ S LLD+P + VD I
Sbjct: 114 -----PDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFE 168
Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
+ ++ L + IL+T H + +L D+ ++ G
Sbjct: 169 NCILGLLLNNKTRILVT-HQLQ-LLPHADQIVVLDNG 203
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 87.3 bits (216), Expect = 4e-18
Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 4/185 (2%)
Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR 96
+ ++KGV+L VK GE V ++GP+G+GK+T ++ GL SG +++ G + K+
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA 81
Query: 97 RARL---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
RA L + ++ Q + LT EN+ LE+ + +LL+ + K
Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT 141
Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGIL 212
LSGG+++R+ +AR+ P + DEP +D I L+ L RG ++
Sbjct: 142 HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLV 201
Query: 213 ITDHN 217
+ H+
Sbjct: 202 LVTHD 206
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 87.0 bits (215), Expect = 5e-18
Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 19/221 (8%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98
V+ + V+PG+ V L+GP+GAGK+T ++ +SGSI IDG DI + R+
Sbjct: 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRS 612
Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKLDSLLKEFNITKW 151
+G+ +PQ+ +F T+ NI + EVY K + H+++ + +N
Sbjct: 613 SIGV--VPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669
Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
L LSGG+++R+ IAR+++ PS ILLDE + +D I + L + I
Sbjct: 670 ERGLK--LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTI 727
Query: 212 LITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEIIDNQD 250
++ H + T++ D +I G ++ G +E++
Sbjct: 728 VVA----HRLSTIVNADLILVISNGRIVERGRHEELLKRDG 764
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 86.9 bits (215), Expect = 5e-18
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 20/203 (9%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+K V VK GE +G++G GAGK+T + + A+ G I+IDG DI+ +P+ R
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL-EDLR 81
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158
++ +PQ+ ++F G T+ N L+ + E ++ + L N
Sbjct: 82 SSLTIIPQDPTLFSG-TIRSN----LDPFDEYSDEEIYGALRVSEGGLN----------- 125
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218
LS GQR+ L +AR+L+ P ++LDE A +D + I IR+ + IL H +
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT-NSTILTIAHRL 184
Query: 219 HEILTLIDRAYIIHAGGVLAHGT 241
I+ D+ ++ AG V +
Sbjct: 185 RTIIDY-DKILVMDAGEVKEYDH 206
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 86.0 bits (213), Expect = 9e-18
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 35/226 (15%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT--KMPMYRR 97
V++ + L + GE V L+GP+G+GK+T ++ DSG I IDG+D+ + RR
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 98 ARLGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKKKRH---------EKLDSLL 143
I + Q+ +F TV ENI A E E+ + + E D+++
Sbjct: 77 Q---IGLVSQDVFLFND-TVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVI 132
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
E + LSGGQR+R+ IAR+L+ P ++LDE + +D + + +
Sbjct: 133 GERGVK---------LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183
Query: 204 LASRGIGILITDHNVHEILTL--IDRAYIIHAGGVLAHGTVQEIID 247
L +I H + T+ DR ++ G ++ GT +E++
Sbjct: 184 LMKNRTTFVIA----HRLSTIENADRIVVLEDGKIVERGTHEELLA 225
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 84.2 bits (208), Expect = 3e-17
Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGNDITKMPMYRR 97
++ V KPG + L+G +GAGKTT ++ G G I I G + R
Sbjct: 806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARV 865
Query: 98 ARLGISYLPQEASIFRGLTVEENIL--AVL-EVYEKDKKKRHEKLDSLLKEFNITKWRHV 154
Y+ Q+ LTV E++ A L E ++++E ++ +++ + ++
Sbjct: 866 ----SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADA 921
Query: 155 LAPL----LSGGQRRRLEIARSLVSFPSYIL-LDEPFAGVDPVAISDIHVLIRDLASRGI 209
L L LS QR+RL I LV+ PS IL LDEP +G+D A + + +R LA G
Sbjct: 922 LVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQ 981
Query: 210 GILITDHNVH-EILTLIDRAYIIHAGG 235
IL T H +I D ++ GG
Sbjct: 982 TILCTIHQPSIDIFEAFDELLLLKRGG 1008
Score = 78.4 bits (193), Expect = 2e-15
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 26/228 (11%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG-----LICADSGSIKIDGNDITKMPM 94
++K + +KPGE+ +LGP G+GKTT + G L SG I +G+D+ +
Sbjct: 130 ILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKS--SGEITYNGHDLKEF-- 185
Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEV----YEKDKKKRHEKL----DSLLKEF 146
+ ++Y ++ F LTV E + D+ R EKL D LLK
Sbjct: 186 --VPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL 243
Query: 147 NI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
+ T + + +SGG+R+R+ I LV S + DE G+D I +
Sbjct: 244 GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKAL 303
Query: 202 RDLA--SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
R LA + ++ EI L D ++ G + G E++
Sbjct: 304 RQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 83.5 bits (206), Expect = 6e-17
Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
LL + ++ + L V+ GE + + GP+G GK+T ++ LI SG++
Sbjct: 3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLF 62
Query: 85 DGNDIT--KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
+G D++ K YR+ +SY Q ++F G TVE+N+ + ++++ L
Sbjct: 63 EGEDVSTLKPEAYRQQ---VSYCAQTPALF-GDTVEDNL--IFPWQIRNRRPDRAAALDL 116
Query: 143 LKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
L F + + + LSGG+++R+ + R+L P +LLDE + +D +I +
Sbjct: 117 LARFALPD-SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 201 I-RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
I R + + + +L H+ + + D+ + G G +QE
Sbjct: 176 IHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 82.3 bits (203), Expect = 1e-16
Identities = 55/222 (24%), Positives = 112/222 (50%), Gaps = 15/222 (6%)
Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI-TKM 92
K + ++ + L +KPGE+VG++G +G+GK+T ++ ++G + +DG+D+
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALAD 70
Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDK-KKRHEKLDSLLKE 145
P + R ++G + QE +F ++ +NI +++ V E K H+ + L +
Sbjct: 71 PAWLRRQVG--VVLQENVLFNR-SIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEG 127
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
++ LSGGQR+R+ IAR+L+ P ++ DE + +D + I + D+
Sbjct: 128 YDTIVGEQGAG--LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI- 184
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
G ++I H + + DR ++ G ++ G+ E++
Sbjct: 185 CAGRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELLA 225
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 79.7 bits (197), Expect = 8e-16
Identities = 42/210 (20%), Positives = 76/210 (36%), Gaps = 66/210 (31%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+ +L+K Y ++K + L + PG+ +GL+G NGAGK+T ++ G + D G +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
+ I Y Q
Sbjct: 61 ST------------VKIGYFEQ-------------------------------------- 70
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
LSGG++ RL +A+ L+ P+ +LLDEP +D +I L L
Sbjct: 71 -------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIE---ALEEALK 114
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGG 235
+++ H+ + + + + + G
Sbjct: 115 EYPGTVILVSHDRYFLDQVATKIIELEDGK 144
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 78.4 bits (193), Expect = 2e-15
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 19/240 (7%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
LLS L+K Y + V + PGE++G++G +G+GKTT ++G + D+G++
Sbjct: 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65
Query: 85 DGN-----DITKMPMYRRARL-----GISYL-PQEA---SIFRGLTVEENILAVLEVYEK 130
D+ M R RL G + P++ + G + E ++A+ +
Sbjct: 66 RMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG 125
Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
+ R E D L+E I R P SGG ++RL+IAR+LV+ P + +DEP G+
Sbjct: 126 NI--RAEAQD-WLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 182
Query: 190 DPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
D + + L+R L G+ ++I H++ L DR ++ G V+ G ++D+
Sbjct: 183 DVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDD 242
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 77.9 bits (192), Expect = 3e-15
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 43/210 (20%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
S + V+K + L +K GE + LLG +G+GK+T ++TG + G I +DG +
Sbjct: 7 SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV 66
Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+ + + IS L Q +F T+ N
Sbjct: 67 SDLEKALSSL--ISVLNQRPYLFDT-TLRNN----------------------------- 94
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
L SGG+R+RL +AR L+ +LLDEP G+DP+ + LI ++
Sbjct: 95 -----LGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT 149
Query: 210 GILITDH-----NVHEILTLIDRAYIIHAG 234
I IT H ++ +IL ++ II G
Sbjct: 150 LIWITHHLTGIEHMDKIL-FLENGKIIMQG 178
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 76.5 bits (188), Expect = 6e-15
Identities = 51/199 (25%), Positives = 91/199 (45%), Gaps = 16/199 (8%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V++ V + PGE+ L+GP+G+GK+T ++ G + +DG I Y
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI---SQYEHKY 85
Query: 100 L--GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK---LDSLLKEFNITKWRHV 154
L +S + QE +F ++++NI L+ + K + S + E V
Sbjct: 86 LHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEV 144
Query: 155 --LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
LSGGQ++R+ IAR+L+ P ++LDE + +D + + + D R ++
Sbjct: 145 GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLV 204
Query: 213 ITDHNVHEILTLIDRAYII 231
I L+ ++RA I
Sbjct: 205 IAHR-----LSTVERADQI 218
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 76.4 bits (188), Expect = 7e-15
Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 43/202 (21%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGLICADSGSIKIDGNDITKMPM 94
++ + YVKPG + L+G +GAGKTT ++ G+I +G I I+G + K
Sbjct: 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKN-- 76
Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154
++R Y+ Q+ LTV E + +LL+
Sbjct: 77 FQR---STGYVEQQDVHSPNLTVREALR----------------FSALLRG--------- 108
Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214
LS QR+RL I L + PS + LDEP +G+D A +I ++ LA G IL T
Sbjct: 109 ----LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCT 164
Query: 215 DHN-VHEILTLIDRAYIIHAGG 235
H I DR ++ GG
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGG 186
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 74.3 bits (182), Expect = 3e-14
Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 21/234 (8%)
Query: 31 LTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
LT KY V++ + + PG+ VGLLG G+GK+T L+ + G I+IDG
Sbjct: 8 LTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVS 66
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK------LDSL 142
+P+ ++ R +PQ+ IF G T +N L+ Y K + K L S+
Sbjct: 67 WNSVPL-QKWRKAFGVIPQKVFIFSG-TFRKN----LDPYGKWSDEEIWKVAEEVGLKSV 120
Query: 143 LKEFNITKWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
+++F + VL +LS G ++ + +ARS++S +LLDEP A +DP+ I
Sbjct: 121 IEQFP-GQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
++ A +++++H + +L R +I V + ++Q++++ + +
Sbjct: 180 TLKQ-AFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLNEKSHFK 231
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 73.3 bits (180), Expect = 6e-14
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 10 IEMPEFQENRAS-KDSLLSACSLTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTF 67
IE E +D+L+ L K Y V+ ++Y GE++G+LGPNG GKTTF
Sbjct: 326 IEFEEKPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYD--GEVIGILGPNGIGKTTF 383
Query: 68 FYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEV 127
++ G+I D GS + L +SY PQ S TVE+ + + +
Sbjct: 384 VKLLAGVIKPDEGSEE---------------DLKVSYKPQYISPDYDGTVEDLLRSAIRS 428
Query: 128 YEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
+ E ++K N+ LSGG+ +R+ IA +L LLDEP A
Sbjct: 429 AFGSSYFKTE----IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSA 484
Query: 188 GVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDR 227
+D + +IR + L+ DH+++ I + DR
Sbjct: 485 YLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDR 525
Score = 56.0 bits (135), Expect = 1e-08
Identities = 53/213 (24%), Positives = 94/213 (44%), Gaps = 28/213 (13%)
Query: 39 YVVKGVDLY----VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM 94
Y V G LY +PG++VG+LGPNG GK+T ++ G + + G + + +
Sbjct: 84 YGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKR 143
Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDK-------------KKRHE--KL 139
+R L + F+ L E + AV + D KK E K
Sbjct: 144 FRGTELQ--------NYFKKL-YEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKF 194
Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
D +++ + LSGG+ +R+ IA +L+ DEP + +D +
Sbjct: 195 DEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254
Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIH 232
+IR+LA G +++ +H++ + L D +I++
Sbjct: 255 VIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 72.0 bits (176), Expect = 2e-13
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 40/224 (17%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+K ++L ++ GE++ + G G+GKT+ ++ G + G IK G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEV-------------YEKDKKKRHEKLDSLLKEF 146
IS+ Q + I G T++ENI+ + E+D K EK +++L E
Sbjct: 100 --ISFSSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEG 156
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI-HVLIRDLA 205
IT LSGGQR R+ +AR++ LLD PF +D +I + L
Sbjct: 157 GIT---------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM 207
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
+ IL+T H L D+ I+H G +GT E+ +
Sbjct: 208 ANKTRILVTSKMEH--LKKADKILILHEGSSYFYGTFSELQSLR 249
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 71.5 bits (175), Expect = 2e-13
Identities = 51/218 (23%), Positives = 107/218 (49%), Gaps = 10/218 (4%)
Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
+V VK V ++ G+ + ++G NG+GK+T M+ G+I SG I I+ + +
Sbjct: 24 QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83
Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLE-----VYEKDKKKRHEKLDSLLKEFNITK 150
R++ I + Q+ + L I +L+ + + ++R +++ L+ +
Sbjct: 84 FRSKR-IRMIFQDPNT--SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLP 140
Query: 151 WRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
P +L+ GQ++R+ +AR+L+ P I+ DE A +D S + L+ +L + G
Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
I + ++ I + D+ ++H G V+ G+ +++
Sbjct: 201 ISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 70.8 bits (173), Expect = 4e-13
Identities = 48/206 (23%), Positives = 79/206 (38%), Gaps = 26/206 (12%)
Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLG 101
K ++ + V L+GPNGAGK+T ++TG + G + R +
Sbjct: 407 KKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS------------RHSHNK 454
Query: 102 ISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLLKEFNITKWRHVLAPL- 158
+ Q + L + LE +K E++ S+L F +T + P+
Sbjct: 455 LPRYNQHLAEQLDLD-----KSSLEFMMPKFPDEKELEEMRSILGRFGLTG-DAQVVPMS 508
Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI----LI 213
LS GQRRR+ AR V P +LLDEP +D I + I + + + +
Sbjct: 509 QLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRL 568
Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAH 239
EI + G + +
Sbjct: 569 ISQVAEEIWVCENGTVTKWDGDIEIY 594
Score = 70.4 bits (172), Expect = 5e-13
Identities = 46/181 (25%), Positives = 71/181 (39%), Gaps = 17/181 (9%)
Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI----- 84
SL+ ++ V ++K V L + G GL+GPNG+GK+TF + G I
Sbjct: 80 SLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR 139
Query: 85 -----DGNDITKMPMYR-RARLGISYLPQEASIFR-GLTVEENILAVLEVYEKDKKKRHE 137
+ + + M R + YL ++ + +E + E D
Sbjct: 140 EIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEA 199
Query: 138 KLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
K +L + LSGG R R +AR+L P +LLDEP +D AI
Sbjct: 200 KAAKILHGLGFLS--EMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAI 257
Query: 195 S 195
Sbjct: 258 V 258
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 69.9 bits (171), Expect = 6e-13
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 16/204 (7%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT--------- 90
V++ V L V GE V L GP+G+GK+T + D G I +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
++ RR +G Y+ Q + ++ + + L ++ K LL N+ +
Sbjct: 86 EVLEVRRTTIG--YVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPE 143
Query: 151 WRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
LAP SGG+++R+ IAR + +LLDEP A +D + + LIR+ +RG
Sbjct: 144 RLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGA 203
Query: 210 GIL--ITDHNVHEILTLIDRAYII 231
++ D V E + DR +
Sbjct: 204 ALVGIFHDEEVRE--AVADRLLDV 225
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 69.8 bits (171), Expect = 7e-13
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 32/214 (14%)
Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG----ND 88
K + + ++K VKPGE+V +LG G+G +T + G++ ++G N
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT---EGNVSVEGDIHYNG 71
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148
I + I Y+ +E F LTV E + L K +E +
Sbjct: 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC------KGNEFVRG------- 118
Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA--S 206
+SGG+R+R+ IA +LVS S + D G+D +I IR +A
Sbjct: 119 ----------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
+ + EI L D+ +++ G + +G
Sbjct: 169 KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 69.1 bits (169), Expect = 1e-12
Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 19/213 (8%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
++ G+ + G+ V ++G +GAGK+T ++ +SGSI IDG DI + +
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI-RDVTQQSL 335
Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKK-KRHEKLDSLLKEFNITKW 151
R I +PQ+ +F T+ NI EV + + H+ + SL + ++
Sbjct: 336 RRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394
Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
L LSGG+++R+ IAR+++ P ++LDE + +D I +R++++ +
Sbjct: 395 ERGL--KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTL 452
Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
+I H + T+ID II VL +G + E
Sbjct: 453 VIA----HRLSTIIDADEII----VLDNGRIVE 477
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 68.8 bits (168), Expect = 1e-12
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 34/189 (17%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
+ E++G+LGPNG GKTTF M+ G++ D G I+I+ + +SY PQ
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT-------------VSYKPQ 68
Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRL 167
TV + + ++ + + + E + K I + P LSGG+ +R+
Sbjct: 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTE----IAKPLQIEQILDREVPELSGGELQRV 124
Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI---------GILITDHNV 218
IA L LLDEP A +D V R +AS+ I + +H++
Sbjct: 125 AIAACLSKDADIYLLDEPSAYLD--------VEQRLMASKVIRRFAENNEKTAFVVEHDI 176
Query: 219 HEILTLIDR 227
I L DR
Sbjct: 177 IMIDYLADR 185
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 65.1 bits (158), Expect = 2e-11
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 34/228 (14%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98
V+K V Y+KPG+ VG+ G G+GK++ ++ G I IDG DI+K+P++ R+
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158
RL I + Q+ +F G ++ N+ D + + D L + I + ++++ L
Sbjct: 96 RLSI--ILQDPILFSG-SIRFNL---------DPECKCTD-DRLWEALEIAQLKNMVKSL 142
Query: 159 LSG--------------GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI--HVLIR 202
G GQR+ +AR+ V S +++DE A +D +A +I V++
Sbjct: 143 PGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASID-MATENILQKVVMT 201
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
A R ++ H V IL D ++ G ++ T + ++ +D
Sbjct: 202 AFADR--TVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQED 246
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 61.4 bits (149), Expect = 2e-10
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 21/169 (12%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI-DGNDITKMP----M 94
++ ++ V+PGE + + G +GAGKT+ + GL SG I + + + +P +
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYL 467
Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154
+ P A F + ++AVL K L L E +W V
Sbjct: 468 PQGTLREALCYPNAAPDFS----DAELVAVL------HKVGLGDLAERLDE--EDRWDRV 515
Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
L SGG+++RL AR L+ P ++ LDE + +D ++ L+++
Sbjct: 516 L----SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 61.5 bits (149), Expect = 2e-10
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
++L +K GE+V L+G NG+GK+T ++TGL SG I +DG ++
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS------------- 388
Query: 104 YLPQEASIFRGL--TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT-----KWRHVLA 156
++ +R L V + ++ + K + ++ L+ +
Sbjct: 389 --AEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSN 446
Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI-HVLIRDLASRGIGILITD 215
LS GQ++RL + +L+ ++LDE A DP + VL+ L +G I
Sbjct: 447 LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506
Query: 216 HNVHEILTLIDRAYIIHA 233
H D Y IHA
Sbjct: 507 H---------DDHYFIHA 515
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 61.3 bits (149), Expect = 2e-10
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 46/177 (25%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++K + +KPG+ + + GP+G GK++ F + GL SG I MP
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG--------MP----EG 63
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159
+ +LPQ + G L+E I W VL
Sbjct: 64 EDLLFLPQRPYLPLGT---------------------------LREQLIYPWDDVL---- 92
Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216
SGG+++RL AR L+ P ++ LDE + +D + ++ L+++ GI ++ H
Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE---LGITVISVGH 146
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 57.3 bits (138), Expect = 4e-09
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 33/187 (17%)
Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI--------CADSGSIKIDGNDIT 90
YV++ ++L +KPG++V ++G +GAGKTT M+ G DSG +++ N ++
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 91 KMPMYRRARLGISYLPQE-ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
+ +P E F +T+ E++ + ++ L +
Sbjct: 457 AL------------IPGEYEPEFGEVTILEHL-------RSKTGDLNAAVEILNRAGLSD 497
Query: 150 KWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI----SDIHVLIRDL 204
+ LS GQ+ R ++A+ L P+ +L+DE A +D + I L R+
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 205 ASRGIGI 211
I +
Sbjct: 558 GITLIVV 564
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 56.2 bits (136), Expect = 9e-09
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 23/213 (10%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG-----LI 75
+L +L N ++KG++L + GEI ++GPNG+GK+T ++ G ++
Sbjct: 3 KNKPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL 62
Query: 76 CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135
G I G I + RA LGI Q G++ + + K K +
Sbjct: 63 ---EGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYN--SKRKFQG 117
Query: 136 HEKLDSLLKEFNITKWRHVLAPL------------LSGGQRRRLEIARSLVSFPSYILLD 183
+LD L+ I + L + SGG+++R EI + + +LD
Sbjct: 118 LPELDP-LEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILD 176
Query: 184 EPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216
E +G+D A+ I I L + I++ H
Sbjct: 177 ETDSGLDIDALKIIAEGINKLMTSENSIILITH 209
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 54.2 bits (130), Expect = 4e-08
Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 38/225 (16%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++ +L + G GL+G NG GK+T + +G + + A
Sbjct: 95 LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIA------NGQVSGFHVEQEVRGDDTEAL 148
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA-PL 158
S L + L E+ +LA L E D +L T +
Sbjct: 149 --QSVLESDTERLDFLAEEKELLAGLT--------LEEIYDKILAGLGFTPEMQLQPTKS 198
Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218
LSGG R RL +AR+L + P +LLDEP +D VA++ L L + I LI H
Sbjct: 199 LSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVA---WLENYLQTWKITSLIVSH-- 253
Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR-RLYLGDRFAF 262
DR ++ +II ++++ Y G+ F
Sbjct: 254 -------DRNFLNT--------VCTDIIHLENLKLDYYKGNYSQF 283
Score = 46.9 bits (111), Expect = 6e-06
Identities = 46/214 (21%), Positives = 83/214 (38%), Gaps = 24/214 (11%)
Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
+S + + K + L + + +G NG GK+T ++ G + G +
Sbjct: 365 ISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV--- 421
Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR-HEKLDSLLK 144
R RL I Y Q F V ++ EK + E++ L
Sbjct: 422 ---------GRHPRLRIKYFAQHHVDFLDKNV-----NAVDFMEKSFPGKTEEEIRRHLG 467
Query: 145 EFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
F ++ L + LSGGQ+ R+ A + P ++LDEP +D + L +
Sbjct: 468 SFGLSG-ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD---RDSLGALAK 523
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
L + G+++ H+ I +L +++ G V
Sbjct: 524 ALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKV 557
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 52.8 bits (126), Expect = 1e-07
Identities = 40/177 (22%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLG 101
K +D + + ++GPNG GK+T ++ G + + G ++ + RL
Sbjct: 604 KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELR------------KNHRLR 651
Query: 102 ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA-PLLS 160
I + Q A+ L EE +E ++ +++ L F + H + LS
Sbjct: 652 IGWFDQHAN--EALNGEE---TPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLS 706
Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217
GGQ+ R+ +A + P ++LDEP +D +I + I + G+++ H+
Sbjct: 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNG---GVIMVSHD 760
Score = 43.2 bits (101), Expect = 8e-05
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 25/170 (14%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI-------KIDGNDITKMPMYRR 97
L + G GL+GPNG GKTT + A +I ++ + + + +
Sbjct: 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLK 343
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
A L +E + E + A + K+ ++L ++ + + R +LA
Sbjct: 344 ADKKRLALLEEEAKLMSQIEEGDTTAAERL-----KEVADELRAIGADSAEARARRILAG 398
Query: 158 L-------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
L SGG R R+ +AR+L P+ ++LDEP +D A+
Sbjct: 399 LGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAV 448
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 52.3 bits (125), Expect = 1e-07
Identities = 55/249 (22%), Positives = 109/249 (43%), Gaps = 29/249 (11%)
Query: 25 LLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
LL +LT ++ + V V V + + GEI GL+G +G+GK+ + G + D+
Sbjct: 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICG-VNKDNW 61
Query: 81 SI-----KIDGNDITKMPMYRRARL---GISYLPQEA------SIFRGLTVEENILAVLE 126
+ + D D+ ++ R +L +S + QE S G + +NI A
Sbjct: 62 RVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPA--W 119
Query: 127 VYEKDKKK----RHEKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSY 179
Y+ + R + LL I + ++ L+ G+ +++ IA +L + P
Sbjct: 120 TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRL 179
Query: 180 ILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
++ DEP ++P + I L+ L + IL+ H++ I D+ +++ G +
Sbjct: 180 LIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239
Query: 239 HGTVQEIID 247
+E++
Sbjct: 240 SAPSEELVT 248
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 52.0 bits (124), Expect = 2e-07
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 23/206 (11%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI---KIDGNDITKMPMYRRARL 100
+++ + G++ ++G G GK++ + G + G + + ++ + R R
Sbjct: 20 INIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79
Query: 101 GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW--------R 152
++Y Q+ + TVEENI + K + K SL + ++ + R
Sbjct: 80 SVAYAAQKPWLLNA-TVEENIT-FGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGER 137
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
+ LSGGQR+R+ +AR+L + + LD+PF+ +D + +SD L GI
Sbjct: 138 GIN---LSGGQRQRICVARALYQNTNIVFLDDPFSALD-IHLSD------HLMQEGILKF 187
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLA 238
+ D +L Y+ HA ++A
Sbjct: 188 LQDDKRTLVLVTHKLQYLPHADWIIA 213
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 51.9 bits (124), Expect = 2e-07
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 26/187 (13%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+V + ++PG + + GPNG GK++ F ++ GL +G + + R
Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNG----------LLSIPRPNN 546
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNI-------TKW 151
I Y+PQ + G T+ + I+ + K K + L+++L ++ W
Sbjct: 547 --IFYIPQRPYMSGG-TLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGW 603
Query: 152 RHVL--APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
V +LSGG+++R+ +AR P Y LLDE + V I +D GI
Sbjct: 604 DAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA---GI 660
Query: 210 GILITDH 216
+L H
Sbjct: 661 SLLSITH 667
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 49.9 bits (119), Expect = 7e-07
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 26/187 (13%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI----- 102
+ G+++GL+GPNG GK+T ++ G + + G + + +R + L
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 103 -----------SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW 151
Y+ +G V E + KK KLD L+ + +
Sbjct: 83 LEGDVKVIVKPQYVDLIPKAVKG-KVGELL---------KKKDERGKLDELVDQLELRHV 132
Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
LSGG+ +R+ IA +L + DEP + +D + LIR+LA +
Sbjct: 133 LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 212 LITDHNV 218
L+ +H++
Sbjct: 193 LVVEHDL 199
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 48.1 bits (114), Expect = 2e-06
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 62/186 (33%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
VK GE++G++GPNG GKTT ++ G + + + + D + Y PQ
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD-------------GITPVYKPQ 68
Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRL 167
LSGG+ +R+
Sbjct: 69 YID------------------------------------------------LSGGELQRV 80
Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI-GILITDHNVHEILTLID 226
IA +L+ ++ L DEP A +D + IR L+ G L+ +H++ + L D
Sbjct: 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD 140
Query: 227 RAYIIH 232
R ++
Sbjct: 141 RIHVFE 146
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 46.8 bits (111), Expect = 7e-06
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 26/180 (14%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
SL+ N +++ + L V G+ + + GP+G GKT+ ++ GL + G +
Sbjct: 435 EFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTK 494
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
+ K + +LPQ + G T+ + ++ L+ + D K + + +L+
Sbjct: 495 PTDGGPK---------DLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASD--EDILR 542
Query: 145 EFNITKWRHVLAPL--------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
+ H+L LS G+++RL AR P + +LDE + V
Sbjct: 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT 602
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 45.8 bits (108), Expect = 1e-05
Identities = 47/173 (27%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 56 LLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL----GISYLPQE--- 108
L+G NGAGKTT +++G G +++ G + L +SYL E
Sbjct: 45 LVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS-----AFHDTSLESSGDLSYLGGEWSK 99
Query: 109 ASIFRGLTVEENILAVLEV---YEKDKKKRHEKLDSLLKEFNITKWR-HVLAPLLSGGQR 164
G + ++ + D +R EKL +L + ++ +WR H + S GQR
Sbjct: 100 TVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDIL-DIDL-RWRMHKV----SDGQR 153
Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISD-IHVLIRDLASRGIGILITDH 216
RR++I L+ +LLDE +D +A +D + L + RG I+ H
Sbjct: 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATH 206
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 42.9 bits (101), Expect = 8e-05
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 156 APLLSGGQRRRLEIARSLVS--FPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILI 213
LSGG+ +R+++A L S + +LDEP G+ I+ + +I+ L G +++
Sbjct: 85 LSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVIL 144
Query: 214 TDHNVHEILTLIDRA-YIIHAG 234
+HN L ++ A +II G
Sbjct: 145 IEHN----LDVLSSADWIIDFG 162
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 42.5 bits (100), Expect = 1e-04
Identities = 49/198 (24%), Positives = 86/198 (43%), Gaps = 34/198 (17%)
Query: 76 CADSGSIKIDGN---------DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLE 126
C G IKI+ + ++ Y R L + Y + + +TVEE LE
Sbjct: 736 CQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKGKNIADVLDMTVEE----ALE 791
Query: 127 VYEKDKKKRHEKLDSLLKEFNITKWRHVL---APLLSGGQRRRLEIARSL---VSFPSYI 180
+E K KL L + + + L A LSGG+ +R+++A+ L + +
Sbjct: 792 FFE-AIPKIARKLQ-TLVDVGLGYIK--LGQPATTLSGGEAQRVKLAKELSKRSTGKTLY 847
Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII-------HA 233
+LDEP G+ I + ++ L +G +++ +HN+ I T +II
Sbjct: 848 ILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKT---ADWIIDLGPEGGDG 904
Query: 234 GG-VLAHGTVQEIIDNQD 250
GG ++A GT +E+ +
Sbjct: 905 GGEIVASGTPEEVAKVKA 922
Score = 40.5 bits (95), Expect = 4e-04
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 156 APLLSGGQRRRLEIARSLVSFPSYIL--LDEPFAGVDPVAISDIHVLI---RDLASRGIG 210
A LSGG+ +R+ +A + S + +L LDEP G+ D LI + L G
Sbjct: 479 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ---RDNERLIETLKRLRDLGNT 535
Query: 211 ILITDHNVHEILT---LIDRAYI-----IHAGGVLAHGTVQEIIDNQD 250
+++ +H+ I +ID I H G ++A GT +E++ N +
Sbjct: 536 VIVVEHDEDTIRAADHIID---IGPGAGEHGGEIVAEGTPEELLANPE 580
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 41.8 bits (98), Expect = 2e-04
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 42/151 (27%)
Query: 52 EIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI 111
EI+ +LG NG GKTTF M+ G + D G +I + +SY PQ+ S
Sbjct: 368 EIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVLN--------VSYKPQKISP 413
Query: 112 FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------------L 159
R TV + + K R + V+ PL L
Sbjct: 414 KREGTVRQLLH---------TKIRDAYMHPQFVN-------DVMKPLQIENIIDQEVQGL 457
Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
SGG+ +R+ +A L L+DEP A +D
Sbjct: 458 SGGELQRVALALCLGKPADVYLIDEPSAYLD 488
Score = 37.2 bits (86), Expect = 0.004
Identities = 38/186 (20%), Positives = 74/186 (39%), Gaps = 26/186 (13%)
Query: 49 KPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR------------ 96
+PG+++GL+G NG GK+T ++ G + G + + +R
Sbjct: 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKIL 157
Query: 97 ----RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
+A + Y+ Q +G TV + D+K + + + + ++
Sbjct: 158 EDNLKAIIKPQYVDQIPRAVKG-TVGSLL---------DRKDERDNKEEVCDQLDLNNLL 207
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
LSGG+ +R IA V + DEP + +D + IR L + I+
Sbjct: 208 DREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYII 267
Query: 213 ITDHNV 218
+ +H++
Sbjct: 268 VVEHDL 273
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 41.0 bits (96), Expect = 3e-04
Identities = 40/185 (21%), Positives = 68/185 (36%), Gaps = 29/185 (15%)
Query: 58 GPNGAGKTTFF----YMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFR 113
G NGAGKTT Y +TG + +S D I + L E + +
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-----GEVRAQVKLAFENANGK 83
Query: 114 GLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRR------RL 167
T+ + L + E + + L + + SGG++ RL
Sbjct: 84 KYTITRS----LAILENVIFCHQGESNWPLLD---------MRGRCSGGEKVLASLIIRL 130
Query: 168 EIARSLVSFPSYILLDEPFAGVDPVAISD-IHVLIRDLASRGIGILITDHNVHEILTLID 226
+A + S + LDEP +D I + + +I + S+ LI + E++ D
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAAD 190
Query: 227 RAYII 231
Y +
Sbjct: 191 HIYRV 195
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 38.6 bits (90), Expect = 0.002
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 156 APLLSGGQRRRLEIARSLVSFPS-----YILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
A LSGG+ +R+++A+ L S S YIL DEP G+ + + +++ L +G
Sbjct: 167 ATTLSGGEAQRIKLAKEL-SKRSTGKTLYIL-DEPTTGLHFHDVKKLLEVLQRLVDKGNT 224
Query: 211 ILITDHNVHEILTLIDRAYII--------HAGGVLAHGT 241
+++ +HN+ I +II G V+A GT
Sbjct: 225 VVVIEHNLDVIKCA---DWIIDLGPEGGDGGGQVVASGT 260
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 35.3 bits (81), Expect = 0.016
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 152 RHVLAPLLSGGQRRRLEIARSL----VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
LSGG++ +A L + +LDE G+DP + I + +
Sbjct: 71 LIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130
Query: 208 GIGILITDHNVHEILTLIDRAYII 231
G +++ H E+ L D+ I
Sbjct: 131 GAQVIVITHL-PELAELADKLIHI 153
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 35.0 bits (80), Expect = 0.022
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 159 LSGGQRR------RLEIARSLVSFPS--YILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
LSGG+R RL ++ L + LDEPF +D + + ++ +L S G
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875
Query: 211 ILITDHNVHEILTLIDRAYIIHAGG 235
I+I H V E+ D + G
Sbjct: 876 IIIISH-VEELKERADVRIRVKKDG 899
Score = 27.3 bits (60), Expect = 4.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 50 PGEIVGLLGPNGAGKTTFFYMMT 72
I ++GPNGAGK++ +T
Sbjct: 24 DSGIFLIVGPNGAGKSSILDAIT 46
>gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the
MutS family also possess a conserved ATPase activity
that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 202
Score = 33.3 bits (76), Expect = 0.071
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTF---------FYMMTGLICADSGSIKIDGNDITKMPMY 95
D+ + G ++ + GPN GK+T+ + + A+S SI + T++
Sbjct: 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAE 82
Query: 96 RRARLGISYLPQE 108
G S E
Sbjct: 83 DSISDGRSTFMAE 95
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 32.8 bits (75), Expect = 0.11
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 156 APLLSGGQRRRLEIARSLVSFPSYIL--LDEPFAGVDPVAISDIHVLIRDLASRGIGILI 213
AP LSGG+ +R+ +A + S + +L LDEP G+ P + ++ L G +L+
Sbjct: 135 APTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLV 194
Query: 214 TDHNVHEILTLIDRAYII--------HAGGVLAHG 240
+H+ + + D ++I H G ++A G
Sbjct: 195 VEHD-EDTIRAAD--HVIDIGPGAGVHGGEIVAQG 226
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 30.7 bits (69), Expect = 0.42
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTT 66
+L V+ ++ L+GP G GKTT
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTT 218
>gnl|CDD|133255 cd00879, Sar1, Sar1 subfamily. Sar1 is an essential component of
COPII vesicle coats involved in export of cargo from
the ER. The GTPase activity of Sar1 functions as a
molecular switch to control protein-protein and
protein-lipid interactions that direct vesicle budding
from the ER. Activation of the GDP to the GTP-bound
form of Sar1 involves the membrane-associated guanine
nucleotide exchange factor (GEF) Sec12. Sar1 is unlike
all Ras superfamily GTPases that use either myristoyl
or prenyl groups to direct membrane association and
function, in that Sar1 lacks such modification.
Instead, Sar1 contains a unique nine-amino-acid
N-terminal extension. This extension contains an
evolutionarily conserved cluster of bulky hydrophobic
amino acids, referred to as the Sar1-N-terminal
activation recruitment (STAR) motif. The STAR motif
mediates the recruitment of Sar1 to ER membranes and
facilitates its interaction with mammalian Sec12 GEF
leading to activation.
Length = 190
Score = 30.3 bits (69), Expect = 0.52
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71
V+ + LY K +I+ LG + AGKTT +M+
Sbjct: 9 VLSSLGLYNKEAKIL-FLGLDNAGKTTLLHML 39
>gnl|CDD|111276 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.
This uncharacterized family contains a P-loop.
Length = 123
Score = 30.3 bits (69), Expect = 0.60
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 49 KPGEIVGLLGPNGAGKTTF 67
K G++V L G GAGKTTF
Sbjct: 13 KAGDVVLLSGDLGAGKTTF 31
>gnl|CDD|37584 KOG2373, KOG2373, KOG2373, Predicted mitochondrial DNA helicase
twinkle [Replication, recombination and repair].
Length = 514
Score = 30.0 bits (67), Expect = 0.61
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 49 KPGEIVGLLGPNGAGKTTF 67
+PGE+ L GP G+GKTTF
Sbjct: 271 RPGELTVLTGPTGSGKTTF 289
>gnl|CDD|73039 cd03280, ABC_MutS2, MutS2 homologs in bacteria and eukaryotes. The
MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family also
possess a conserved ATPase activity that belongs to the
ATP binding cassette (ABC) superfamily. MutS homologs
(MSH) have been identified in most prokaryotic and all
eukaryotic organisms examined. Prokaryotes have two
homologs (MutS1 and MutS2), whereas seven MSH proteins
(MSH1 to MSH7) have been identified in eukaryotes. The
homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6
are primarily involved in mitotic mismatch repair,
whereas MSH4-MSH5 is involved in resolution of Holliday
junctions during meiosis. All members of the MutS
family contain the highly conserved Walker A/B ATPase
domain, and many share a common mechanism of action.
MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to
form sliding clamps, and recognition of specific DNA
structures or lesions results in ADP/ATP exchange..
Length = 200
Score = 30.2 bits (68), Expect = 0.63
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 174 VSFPSYILLDEPFAGVDPVAISDIHV-LIRDLASRGIGILITDH 216
S +LLDE +G DPV + + + ++ +L RG ++ T H
Sbjct: 106 ADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTH 149
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the
development of this type of cancer.
Length = 203
Score = 30.0 bits (68), Expect = 0.65
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 56 LLGPNGAGKTTFFY 69
LLGP+ +GKT F
Sbjct: 5 LLGPSDSGKTALFT 18
>gnl|CDD|35463 KOG0242, KOG0242, KOG0242, Kinesin-like protein [Cytoskeleton].
Length = 675
Score = 30.1 bits (67), Expect = 0.70
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 57 LGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR---LGISYLP--QEASI 111
G G+GKT Y M+G D G I + DI + R + +SYL E I
Sbjct: 93 YGQTGSGKT---YTMSG-SEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNER-I 147
Query: 112 FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLE 168
L + L + E + + L E ++ +L L G + R
Sbjct: 148 RDLLNPDGGDLRLRE--DSEGGIVVPGL----TEETVSSREELLELLQKGNKNRTTG 198
>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 47 YVKPGEIVGLLGPNGAGKTTF 67
+K G++V L G GAGKTT
Sbjct: 21 ALKAGDVVLLSGDLGAGKTTL 41
>gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction
only].
Length = 733
Score = 28.5 bits (63), Expect = 1.7
Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 19/140 (13%)
Query: 49 KPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-------MYRRAR-- 99
K +V L P G GKT ++ + + IK+ I +P MYRRA+
Sbjct: 212 KRSLLVVLEAPTGYGKTEASLILALALLDE--KIKLKSRVIYVLPFRTIIEDMYRRAKEI 269
Query: 100 ---LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156
+ +S L +E + +L + D K+ LL +T + ++
Sbjct: 270 FGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKK-----LLLALIVVTPIQILIF 324
Query: 157 PLLSGGQRRRLEIARSLVSF 176
+ + SLV
Sbjct: 325 SVKGFKFEFLALLLTSLVIL 344
>gnl|CDD|30199 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis..
Length = 273
Score = 28.7 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIF 112
I+G+ G +G GK+TF +T L +D ++ I +D + R GI+ L A+ F
Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTV-ICLDDYHSLDRKGRKETGITALDPRANNF 59
>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands..
Length = 271
Score = 28.3 bits (63), Expect = 2.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 49 KPGEIVGLLGPNGAGKTTF 67
+ GE++ L G GKTTF
Sbjct: 28 RKGELIILTAGTGVGKTTF 46
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 28.3 bits (63), Expect = 2.3
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 13/105 (12%)
Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS--------Y 104
I+ ++G +G+GK+T + + G+ IDG+D+ + GI +
Sbjct: 1 IIVVMGVSGSGKST----VGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPW 56
Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
L V+ K+ + L +
Sbjct: 57 LQALTDALLAKLASAGEGVVVAC-SALKRIYRDILRGGAANPRVR 100
>gnl|CDD|147288 pfam05028, PARG_cat, Poly (ADP-ribose) glycohydrolase (PARG).
Poly(ADP-ribose) glycohydrolase (PARG), is a
ubiquitously expressed exo- and endoglycohydrolase which
mediates oxidative and excitotoxic neuronal death.
Length = 339
Score = 28.0 bits (63), Expect = 3.0
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 173 LVSF--PSYILLDEPFAGVDPVAISDIHV----LIRDLASRGIGILITDHNVHEILTLID 226
VSF S LD P + + V LI D +G G L +D
Sbjct: 118 CVSFERKSLSYLDAPLWKKSTTPLCPVEVFTDGLIED---QGQGALQ-----------VD 163
Query: 227 RA--YIIHAGGVLAHGTVQEII 246
A Y+ GGVL HG VQE I
Sbjct: 164 FANKYL--GGGVLGHGCVQEEI 183
>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 28.0 bits (62), Expect = 3.0
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYI--IHAGGV 236
+LDEP A + P ++ ++RDLA G I+I H+ IL I A I I G+
Sbjct: 151 ILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS--PILLAIPGAEIYEISESGI 206
>gnl|CDD|35300 KOG0077, KOG0077, KOG0077, Vesicle coat complex COPII, GTPase
subunit SAR1 [Intracellular trafficking, secretion, and
vesicular transport].
Length = 193
Score = 27.6 bits (61), Expect = 3.2
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71
V++ + LY K G+++ LG + AGKTT +M+
Sbjct: 10 VLQFLGLYKKFGKLL-FLGLDNAGKTTLLHML 40
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G
in the GTP form binds to the ribosome, primarily
through the interaction of its EF-Tu-like domain with
the 50S subunit. The binding of EF-G to the ribosome
in this manner stimulates the GTPase activity of EF-G.
On GTP hydrolysis, EF-G undergoes a conformational
change that forces its arm deeper into the A site on
the 30S subunit. To accommodate this domain, the
peptidyl-tRNA in the A site moves to the P site,
carrying the mRNA and the deacylated tRNA with it. The
ribosome may be prepared for these rearrangements by
the initial binding of EF-G as well. The dissociation
of EF-G leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 27.9 bits (63), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 54 VGLLGPNGAGKTTFFYMM---TGLI 75
+ L+G +G+GKTT + TG I
Sbjct: 2 IALVGHSGSGKTTLAEALLYATGAI 26
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 27.5 bits (61), Expect = 3.3
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 56 LLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGL 115
+LGP GAGK+T + G +D DI + + R LG + I +G
Sbjct: 5 ILGPPGAGKSTL----AKKLAKKLGLPHLDTGDILRAAIAERTELGEE---IKKYIDKGE 57
Query: 116 TVEENIL 122
V + I+
Sbjct: 58 LVPDEIV 64
>gnl|CDD|133254 cd00878, Arf_Arl, Arf (ADP-ribosylation factor)/Arl (Arf-like)
small GTPases. Arf proteins are activators of
phospholipase D isoforms. Unlike Ras proteins they
lack cysteine residues at their C-termini and therefore
are unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are
regulators of vesicle formation in intracellular
traffic that interact reversibly with membranes of the
secretory and endocytic compartments in a GTP-dependent
manner. They depart from other small GTP-binding
proteins by a unique structural device, interswitch
toggle, that implements front-back communication from
N-terminus to the nucleotide binding site. Arf-like
(Arl) proteins are close relatives of the Arf, but only
Arl1 has been shown to function in membrane traffic
like the Arf proteins. Arl2 has an unrelated function
in the folding of native tubulin, and Arl4 may function
in the nucleus. Most other Arf family proteins are so
far relatively poorly characterized. Thus, despite
their significant sequence homologies, Arf family
proteins may regulate unrelated functions.
Length = 158
Score = 27.5 bits (62), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 3/19 (15%)
Query: 53 IVGLLGPNGAGKTTFFYMM 71
I+GL +GAGKTT Y +
Sbjct: 4 ILGL---DGAGKTTILYKL 19
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes
are implicated in the metabolism of DNA ends. They
cleave ends sealed by hairpin structures and are
thought to play a role in removing protein bound to DNA
termini..
Length = 213
Score = 27.5 bits (61), Expect = 3.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMT 72
+ + + GP GAGK+T +T
Sbjct: 25 LDNNGLFLICGPTGAGKSTILDAIT 49
>gnl|CDD|143957 pfam00199, Catalase, Catalase.
Length = 383
Score = 27.6 bits (62), Expect = 3.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 206 SRGIGILITDHNVHEILTLIDRAYI----IHAGGVLAHGT 241
RG +L+ D ++ E L DR I +HA G A GT
Sbjct: 19 PRG-PLLLQDFHLIEKLAHFDRERIPERVVHAKGAGAFGT 57
>gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 27.3 bits (60), Expect = 3.9
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 173 LVSFPSY-ILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEI--LTLIDRAY 229
L+ Y I+++ P A + P S + L+ +LA+RG+ +++ H+ H I L LI
Sbjct: 256 LIVKKKYLIIIENPEAHLHPEGQSKLGDLLAELAARGVQVVVETHSDHIINGLRLIVLEG 315
Query: 230 IIHAGGVLAHGTVQEIIDNQDVRRLYLGDRFAF 262
I LA + + V+++ +
Sbjct: 316 KILTRNKLAVYLFKREGNGTIVKKIKINKEGIP 348
>gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK)..
Length = 179
Score = 27.6 bits (61), Expect = 3.9
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 53 IVGLLGPNGAGKTTF 67
+VG+ GP+G+GKTTF
Sbjct: 1 VVGIAGPSGSGKTTF 15
>gnl|CDD|35104 COG5545, COG5545, Predicted P-loop ATPase and inactivated
derivatives [General function prediction only].
Length = 517
Score = 27.4 bits (60), Expect = 4.2
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73
+ DS L+ +K + V + + K ++ L GP G+ K+TF + G
Sbjct: 173 ASDSTLAR-QASKCFMVGAVARVLWPGAKVDFMLVLEGPQGSHKSTFLSELFG 224
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 27.3 bits (60), Expect = 4.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTT 66
D+ E ++GPNG+GKTT
Sbjct: 18 DITFGESETTIIVGPNGSGKTT 39
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.3 bits (60), Expect = 4.5
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 158 LLSGGQRRRLEIA-----RSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
LLSGG++ +A + P Y+L DE A +D + + LI++++ I+
Sbjct: 1066 LLSGGEKSLTALALLFAIQKYRPAPFYVL-DEVDAALDDANVERVARLIKEMSKETQFIV 1124
Query: 213 IT 214
IT
Sbjct: 1125 IT 1126
>gnl|CDD|144151 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 27.1 bits (61), Expect = 4.7
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 10/36 (27%)
Query: 53 IVGLLGPNGAGKTT------FFYMM----TGLICAD 78
++ L+G G+GKTT + L+ AD
Sbjct: 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAAD 38
>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
[Function unknown].
Length = 491
Score = 27.4 bits (60), Expect = 4.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 53 IVGLLGPNGAGKTTFFYMMTG 73
++G+LG G+GK+T ++
Sbjct: 190 VIGVLGGQGSGKSTLLSLLAA 210
>gnl|CDD|30004 cd01394, radB, RadB. The archaeal protein radB shares similarity
radA, the archaeal functional homologue to the
bacterial RecA. The precise function of radB is
unclear..
Length = 218
Score = 26.4 bits (58), Expect = 7.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
V+ G + + GP G GKT + + A G
Sbjct: 16 VERGTVTQVYGPPGTGKTN-IAIQLAVETAGQG 47
>gnl|CDD|36564 KOG1350, KOG1350, KOG1350, F0F1-type ATP synthase, beta subunit
[Energy production and conversion].
Length = 521
Score = 26.5 bits (58), Expect = 8.1
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 25/91 (27%)
Query: 11 EMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDL---YVKPGEIVGLLGPNGAGKTTF 67
E PEF E ++ L++ +K VDL Y K G+I GL G G GKT
Sbjct: 161 EAPEFVEMSVEQEILVTG------------IKVVDLLAPYAKGGKI-GLFGGAGVGKTVL 207
Query: 68 FYMMTGLICADSGSIKI---------DGNDI 89
+ I G + +GND+
Sbjct: 208 IMELINNIAKAHGGYSVFAGVGERTREGNDL 238
>gnl|CDD|30719 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 26.3 bits (58), Expect = 8.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 54 VGLLGPNGAGKTTFFYMMTG 73
V L+G GKTT F +TG
Sbjct: 6 VALVGNPNVGKTTLFNALTG 25
>gnl|CDD|34251 COG4632, EpsL, Exopolysaccharide biosynthesis protein related to
N-acetylglucosamine-1-phosphodiester
alpha-N-acetylglucosaminidase [Carbohydrate transport
and metabolism].
Length = 320
Score = 26.1 bits (57), Expect = 9.0
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNG 61
+++ +LS + K+Y +V + + G+++G +G
Sbjct: 121 TAREGVLSESEMAKRYRAVAAINASGFRMSNGKVMGFQISDG 162
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life..
Length = 349
Score = 26.4 bits (59), Expect = 9.5
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
Query: 29 CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71
L KKY ++ L+V VG+ GP+G G F +
Sbjct: 155 VDLAKKYGAI-------LFVDEAHSVGVYGPHGRGVEEFGGLT 190
>gnl|CDD|176167 cd08478, PBP2_CrgA, The C-terminal substrate binding domain of
LysR-type transcriptional regulator CrgA, contains the
type 2 periplasmic binding domain. This CD represents
the substrate binding domain of LysR-type
transcriptional regulator (LTTR) CrgA. The LTTRs are
acting as both auto-repressors and activators of target
promoters, controlling operons involved in a wide
variety of cellular processes such as amino acid
biosynthesis, CO2 fixation, antibiotic resistance,
degradation of aromatic compounds, nodule formation of
nitrogen-fixing bacteria, and synthesis of virulence
factors, to name a few. In contrast to the tetrameric
form of other LTTRs, CrgA from Neisseria meningitides
assembles into an octameric ring, which can bind up to
four 63-bp DNA oligonucleotides. Phylogenetic cluster
analysis further showed that the CrgA-like regulators
form a subclass of the LTTRs that function as octamers.
The CrgA is an auto-repressor of its own gene and
activates the expression of the mdaB gene which coding
for an NADPH-quinone reductase and that its action is
increased by MBL (alpha-methylene-gamma-butyrolactone),
an inducer of NADPH-quinone oxidoreductase. The
structural topology of this substrate-binding domain is
most similar to that of the type 2 periplasmic binding
proteins (PBP2), which are responsible for the uptake of
a variety of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation
across the cytoplasmic membrane energized by ATP
hydrolysis.
Length = 199
Score = 26.1 bits (58), Expect = 9.9
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
H+LAPL++ + R +I LVS I L E D+A R IG L
Sbjct: 16 HLLAPLIAKFRERYPDIELELVSNEGIIDLIERKT---------------DVAIR-IGEL 59
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLA-HGTVQEIID 247
TD +H R I+ + LA HGT Q I D
Sbjct: 60 -TDSTLHARPLGKSRLRILASPDYLARHGTPQSIED 94
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.141 0.406
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,213,772
Number of extensions: 175018
Number of successful extensions: 1171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 945
Number of HSP's successfully gapped: 254
Length of query: 262
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,275,709
Effective search space: 726870530
Effective search space used: 726870530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)