RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] (262 letters) >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 264 bits (676), Expect = 2e-71 Identities = 122/238 (51%), Positives = 173/238 (72%), Gaps = 1/238 (0%) Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 + L+A +L K Y VV+ V L V GEIVGLLGPNGAGKTT FYM+ G++ D+G+I Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61 Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSL 142 ID DI+ +P++ RAR GI YLPQEASIFR L+V +N++AVL++ + ++R ++ + L Sbjct: 62 IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 ++EF+I R + LSGG+RRR+EIAR+L + P +ILLDEPFAGVDP+++ DI +I Sbjct: 122 MEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181 Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGDRF 260 L G+G+LITDHNV E L + +RAYI+ G ++AHGT EI+ ++ V+R+YLG+ F Sbjct: 182 HLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDF 239 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 176 bits (448), Expect = 6e-45 Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 10/219 (4%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 +++GV L V GE+ +LG NG GKTT + GL+ SGSI++DG DITK+P + RAR Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL---LKEFNITKWRHVLA 156 GI+Y+PQ IF LTVEEN+L L + +K +++ L LKE Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM-----LGRRG 129 Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITD 215 LSGGQ+++L IAR+LV+ P +LLDEP G+ P I DI +IR L + G+ IL+ + Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189 Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254 + L DR Y++ G V+A G E +D VRR Sbjct: 190 QYLDFARELADRYYVMERGRVVASGAGDE-LDEDKVRRY 227 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 167 bits (426), Expect = 2e-42 Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 2/213 (0%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92 K Y V GV+ V+ GE+ G LGPNGAGKTT M+T L+ SG+ ++ G D+ + Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60 Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152 P R +GI +PQ AS+ LT EN+ + +Y K + E+ + LL+ F + + Sbjct: 61 PRKVRRSIGI--VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 SGG RRRL+IA SL+ P + LDEP G+DP I IR L G+ IL Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 +T H + E L DR II G ++A GT +E+ Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 148 bits (377), Expect = 9e-37 Identities = 86/250 (34%), Positives = 138/250 (55%), Gaps = 16/250 (6%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 LLS L ++ + V V+L V+ EIV L+GPNGAGKTT F +TG G+I + Sbjct: 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD------------K 132 G I +P ++ AR+G+ Q +FR +TV EN+L K + Sbjct: 65 RGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR 124 Query: 133 KKRHEKLDSL---LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 + E LD L+ + + + A L+ GQ+RRLEIAR +V+ P ++LDEP AG+ Sbjct: 125 RAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184 Query: 190 DPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 +P ++ LI +L + + +L+ +H++ ++ + DR Y+++ G LA+GT +EI +N Sbjct: 185 NPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNN 244 Query: 249 QDVRRLYLGD 258 DV + YLG+ Sbjct: 245 PDVIKAYLGE 254 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 148 bits (376), Expect = 1e-36 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 4/231 (1%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L L+ Y + + V V+PGE V LLGPNGAGK+T F ++T L A G I + Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G+D+ + P ARLG+ + Q+ ++ L+V +N+ ++ + + E++ +LL Sbjct: 62 GHDLRRAPRAALARLGVVF--QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLAR 119 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + + L+GG RRR+EIAR+L+ P+ +LLDEP G+DP + + I +R L Sbjct: 120 LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179 Query: 206 -SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 +G+ +L H V EI DR ++H G VLA G E+ L Sbjct: 180 RDQGLSVLWATHLVDEI-EADDRLVVLHRGRVLADGAAAELRGALGGADLE 229 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 148 bits (375), Expect = 2e-36 Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 17/246 (6%) Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 +L L+ ++ + + LYV PGE+ ++GPNGAGKTT ++TG D GS+ Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60 Query: 84 IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEV-YEKDK--------KK 134 G D+T +P ++ AR GI Q+ ++F LTV EN LE+ +DK + Sbjct: 61 FGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFEN----LELALPRDKSVFASLFFRL 116 Query: 135 RHE---KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 E +++ +L+ + LA LLS GQ++ LEI L+ P +LLDEP AG+ Sbjct: 117 SAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTD 176 Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 L++ LA +++ +H++ + ++ D+ ++H G VLA G++ ++ + V Sbjct: 177 EETEKTAELLKSLA-GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADPRV 235 Query: 252 RRLYLG 257 +YLG Sbjct: 236 IEVYLG 241 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 138 bits (349), Expect = 1e-33 Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 3/234 (1%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 +LS ++ Y + + V L++ GEIV L+G NGAGKTT + G A SG I Sbjct: 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 DG DIT + R ++ +P+ +F +TVEEN+ + + ++ + E++ + + Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL--AMGGFFAERDQFQERIKWVYE 122 Query: 145 EF-NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 F + + R A +SGG+++ L I R+L+S P +LLDEP G+ P+ I I I Sbjct: 123 LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182 Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257 L +G+ I + + N ++ L L DR Y++ G V+ T ++ N+ VR YLG Sbjct: 183 LREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 136 bits (345), Expect = 5e-33 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 4/234 (1%) Query: 16 QENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI 75 Q + + LL A S++K+Y+ V V+KG+D + GE+ LLG NGAGK+T ++ G++ Sbjct: 2 QTSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 Query: 76 CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135 DSG+++I GN ++ + +LGI +PQE +F L+V+ENIL L + + Sbjct: 62 PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQ-- 119 Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 K+ LL A L R+ +EI R L+ ++LDEP A + P Sbjct: 120 --KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177 Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 + IR+L ++G+GI+ H + EI L DR ++ G + G ++ + Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231 Score = 102 bits (257), Expect = 8e-23 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 10/223 (4%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103 + L V+ GEI+GL G GAG+T + GL A G I ++G +I + +R G+ Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 Query: 104 YLP---QEASIFRGLTVEENILAVLE---VYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 YLP Q + ++ + N+ A+ + + + L+ + NI K+ H Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-KFNHAEQA 400 Query: 158 L--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215 LSGG ++++ IA+ L + P +++DEP GVD A +DI+ LIR +A++ + +L Sbjct: 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460 Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGD 258 ++ EI + DR ++H G ++ I+ + RL G+ Sbjct: 461 SDLEEIEQMADRVLVMH-QGEISGALTGAAINVDTIMRLAFGE 502 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 133 bits (337), Expect = 4e-32 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 4/219 (1%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++K++ S + V+L V G +V LLGP+G+GK+T ++ GL DSG I+++G D T Sbjct: 6 ISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 ++ R I ++ Q ++F+ LTV +NI LE+ + K K +++ LL+ + Sbjct: 66 RVHARDR---KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG 122 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GI 209 LSGGQR+R+ +AR+L P +LLDEPF +D ++ +R L + Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182 Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + H+ E + + DR ++ G + G+ E+ D+ Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 133 bits (335), Expect = 6e-32 Identities = 83/235 (35%), Positives = 120/235 (51%), Gaps = 11/235 (4%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 ++K Y VV G+ V GE GLLGPNGAGK+T M+ G+ D+G I + G Sbjct: 46 GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG--- 102 Query: 90 TKMPMYRRARL---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146 +P+ RARL I +PQ ++ TV EN+L + ++ + SLL+ Sbjct: 103 --VPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA 160 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + LSGG +RRL +AR+L++ P ++LDEP G+DP A I +R L + Sbjct: 161 RLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 220 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGD 258 RG IL+T H + E L DR ++ AG +A G +ID V +Y GD Sbjct: 221 RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGD 275 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 131 bits (332), Expect = 1e-31 Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 + K+Y VV G+ +V+ GE GLLGPNGAGKTT M+ GL D+GSI + G + Sbjct: 13 VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 + R R+G+ +PQ ++ TV EN+L + + LL+ + Sbjct: 73 SRARHARQRVGV--VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 LSGG +RRL +AR+LV+ P ++LDEP G+DP A + +R L +RG Sbjct: 131 KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKT 190 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGDRFA 261 IL+T H + E L DR +I G +A G +I+++ DV +Y D A Sbjct: 191 ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVA 244 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 127 bits (322), Expect = 2e-30 Identities = 65/216 (30%), Positives = 118/216 (54%), Gaps = 3/216 (1%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 SLTK Y + + V + G IVG LGPNGAGK+T ++TG + DSGS+++ G D+ Sbjct: 7 SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 + P + I YLP+ ++ + V E + + +Y + ++++ +++ + Sbjct: 67 LQNPK--EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 +H LS G R+R+ +A++L+ P ++LDEP G+DP + +I +I+++ Sbjct: 125 PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184 Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 IL T H + E+ + DR II+ G ++A + E+ Sbjct: 185 IILST-HIMQEVEAICDRVIIINKGKIVADKKLDEL 219 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 127 bits (320), Expect = 4e-30 Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92 KK V DL + GEI ++G +G+GK+T M+ LI +G I IDG +I K Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60 Query: 93 P---MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 + R I + Q+ ++F +T+ +N E+ +++R EK LLK + Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRG 208 ++ H LSGG ++R+ +AR+L + P +L+DE F+ +DP+ + ++ L A+ Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 I+ H++ E + + DR I+ AG ++ GT EI+ N Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 123 bits (310), Expect = 4e-29 Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++K Y VV + + GE GLLGPNGAGK+T M+ G+I D G I + G + Sbjct: 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 R +G+ +PQ ++ TV EN+L + ++ + SLL+ + Sbjct: 70 SRARLARVAIGV--VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 127 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 V LLSGG +RRL +AR+L++ P ++LDEP G+DP A I +R L +RG Sbjct: 128 KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGD 258 IL+T H + E L DR ++ +G +A G +ID Q +V +Y GD Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGD 238 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 122 bits (307), Expect = 9e-29 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 11/224 (4%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGN 87 L Y + V+ + L ++ GE++ L+G +G GKTT + G + A +G I I Sbjct: 10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69 Query: 88 DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147 D+T P ++R G++ L Q ++F L VE+N+ L + K E++ LK Sbjct: 70 DLTHAPPHKR---GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVG 126 Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP----VAISDIHVLIRD 203 + L LSGG ++R+ IAR++ P +LLDEP + +D +I L + Sbjct: 127 LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186 Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 L + IL H+ + LTL D+A I+ G + AHG Q + D Sbjct: 187 LPE--LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 122 bits (308), Expect = 9e-29 Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%) Query: 31 LTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 L+K Y + +K ++L + PGE V ++GP+GAGK+T + L+ SGSI ++G DI Sbjct: 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI 66 Query: 90 TKM--PMYRRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKDKKKRH 136 TK+ R+ R I + Q ++ LTV EN+L ++L + ++ K+R Sbjct: 67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERA 126 Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 S L+ + + A LSGGQ++R+ IAR+L P IL DEP A +DP Sbjct: 127 L---SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183 Query: 197 IHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 + ++ + GI ++I H V DR + AG ++ G E +D++ +R +Y Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE-LDDEVLRHIY 242 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 122 bits (307), Expect = 1e-28 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 LS ++ K++ + +K + L VK GE V LLGP+G GKTT ++ GL +G+I Sbjct: 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G DIT++P +R GI + Q ++F LTV +NI L+ + + E++ LL Sbjct: 65 GRDITRLPPQKRD-YGIVF--QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDL 121 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + LSGGQ++R+ +AR+L + P +LLDEP + +D + IR L Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181 Query: 206 SR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 R G+ ++ H+ E L++ DR +++ G + GT QEI + Sbjct: 182 RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 120 bits (304), Expect = 2e-28 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 12/225 (5%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 L+K++ V + L V + GLLGPNGAGK+T M+TG++ SG I DG+ Sbjct: 6 LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH--- 62 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 P R+ I L + ++ LT EN+ + ++D +L ++T Sbjct: 63 --PWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVDLTN 116 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 A S G ++RL IA +L++ P ++LDEP G+DP+ I ++ LIR +GI Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 ++++ H + E+ L D II GVL G +I ++++ +L+ Sbjct: 177 VILSSHILSEVQQLADHIGIIS-EGVL--GYQGKINKSENLEKLF 218 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 120 bits (303), Expect = 4e-28 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 11/236 (4%) Query: 25 LLSACSLTKKYNSVYVV-KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 +L L Y KG++ + GE+V LLGPNGAGK+T F G++ SG + Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60 Query: 84 IDGNDIT---KMPMYRRARLGISYLPQEASIFRGLTVEENIL---AVLEVYEKDKKKRHE 137 I G I K + R +GI + + +F TVEE++ L + +++ +KR Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKR-- 117 Query: 138 KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197 + LK + + + LSGGQ++R+ IA L P I+LDEP +G+DP+ S I Sbjct: 118 -VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQI 176 Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 L+ DL GI I+I+ H+V + D+ Y++ G ++ GT +E+ + + R Sbjct: 177 MKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 116 bits (291), Expect = 7e-27 Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 20/221 (9%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR--RARLG 101 + L V G+I ++GP+G GKTT ++ G I D G I DG +I M R R Sbjct: 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 Query: 102 ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL-DSLLKEFNITKWRHV------ 154 +S L Q ++F + V +N+ L + H +L LL + K V Sbjct: 86 MSMLFQSGALFTDMNVFDNVAYPL--------REHTQLPAPLLHSTVMMKLEAVGLRGAA 137 Query: 155 -LAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211 L P LSGG RR +AR++ P I+ DEPF G DP+ + + LI +L S G+ Sbjct: 138 KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC 197 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252 ++ H+V E+L++ D AYI+ ++AHG+ Q + N D R Sbjct: 198 VVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR 238 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 115 bits (290), Expect = 1e-26 Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 4/193 (2%) Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104 DL V GEIV ++GP+GAGK+T ++ G I SGSIK++ T + Y+R +S Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRP---VSM 74 Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164 L QE ++F LTV +NI L K ++ EK+ ++ I + L LSGGQR Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQR 134 Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIGILITDHNVHEILT 223 +R+ +AR LV +LLDEPF+ +DP+ ++ L++ L S R +L+ H++ + Sbjct: 135 QRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194 Query: 224 LIDRAYIIHAGGV 236 + + ++ G + Sbjct: 195 IASQIAVVSQGKI 207 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 113 bits (285), Expect = 4e-26 Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L ++ +V GVD+ PG + GLLGPNG+GK+T ++ G + D+G++ + Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKLDS 141 G D+ + RAR ++ + Q++ LTV + + ++ D +D Sbjct: 62 GVDLHGLSRRARARR-VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120 Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 L ++ LSGG+R+R+ +AR+L P +LLDEP +D A + L+ Sbjct: 121 ALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV 180 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 R+LA+ G+ ++ H+++ + D ++ G V+A G +E++ +R +Y Sbjct: 181 RELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVY 234 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 113 bits (285), Expect = 4e-26 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 8/240 (3%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 +S + K + V+ +K V+L V PGEI LLG NGAGK+T +++G+ G+I I Sbjct: 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL-------AVLEVYEKDKKKRHE 137 + + K+ A+LGI + QE S+ LTV EN+ V V D ++ Sbjct: 65 NNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV 124 Query: 138 KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197 + +L + LS ++ LEIA++L+ I++DEP + + + + Sbjct: 125 RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184 Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257 +++ L G I+ H + EI + DR ++ G + G V + + N D+ RL +G Sbjct: 185 FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD-VSNDDIVRLMVG 243 Score = 82.9 bits (205), Expect = 8e-17 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 37/232 (15%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100 V+ + V GEI+G G G+G+T + G+ G I+++G DI+ + Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 Query: 101 GISYLPQ---EASIFRGLTVEENILAVLE-------------VYEKDKKKRHEKLDSLLK 144 G++Y+ + + F ++ +N+ A+ +E D+++ E LL Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNM-AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397 Query: 145 ------EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 NIT+ LSGG ++++ I++ L P I+ DEP G+D A ++I+ Sbjct: 398 LKCHSVNQNITE--------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY 449 Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 ++R LA G IL+ + EI+T+ DR I V G + +I+ N+D Sbjct: 450 KVMRQLADDGKVILMVSSELPEIITVCDR--IA----VFCEGRLTQILTNRD 495 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 113 bits (284), Expect = 5e-26 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 13/210 (6%) Query: 46 LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYL 105 L GE++GLLGPNGAGKTT + GLI G++K+ G + I Y+ Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS------PGKGWRHIGYV 54 Query: 106 PQ--EASIFRGLTVEENILA----VLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159 PQ E + ++V +++ + + + L+ +T+ L Sbjct: 55 PQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL 114 Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219 SGGQR+R+ +AR+L + PS +LLDEPF G+D + L +LA G IL+T H++ Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174 Query: 220 EILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 + + DR +++ G V+A GT Q++ D Sbjct: 175 QAMATCDRVVLLN-GRVIADGTPQQLQDPA 203 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 111 bits (281), Expect = 1e-25 Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 4/204 (1%) Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104 DL V+ GE V +LGP+GAGK+T ++ G + SGS+ ++G D T P RR +S Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP---VSM 75 Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164 L QE ++F LTV +NI L K + EKL ++ ++ I L LSGGQR Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQR 135 Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILT 223 +R+ +AR LV +LLDEPF+ +DP ++ L+ + R + +L+ H++ + Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAAR 195 Query: 224 LIDRAYIIHAGGVLAHGTVQEIID 247 + R+ ++ G + G E++ Sbjct: 196 IAPRSLVVADGRIAWDGPTDELLS 219 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 110 bits (277), Expect = 4e-25 Identities = 72/245 (29%), Positives = 127/245 (51%), Gaps = 22/245 (8%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 +L A +L+ + ++ V L ++PGE+V +LGPNGAGK+T ++G + DSG +++ Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 Query: 85 DGNDITKMPMYRRA-RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 +G + A R + LPQ +S+ TVEE + + + + + + L Sbjct: 62 NGRPLADWSPAELARRRAV--LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLV------SFPSYILLDEPFAGVDPVAISDI 197 + ++ P LSGG+++R+++AR L P ++LLDEP + +D Sbjct: 120 AQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA--HQH 177 Query: 198 HVL--IRDLA-SRGIGILITDHNVHEILTLI----DRAYIIHAGGVLAHGTVQEIIDNQD 250 HVL R LA RG+ +++ H+ L L DR ++H G ++A GT E++ + Sbjct: 178 HVLRLARQLAHERGLAVIVVLHD----LNLAARYADRIVLLHQGRLVADGTPAEVLTPET 233 Query: 251 VRRLY 255 +RR+Y Sbjct: 234 LRRVY 238 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 109 bits (275), Expect = 6e-25 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 10/232 (4%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 LL +LTK ++ + V V L + GEI LLG +G GK+T M+ G +G I + Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE---KLDS 141 DG D++ +P Y+R I+ + Q ++F +TVE+NI L ++DK + E +++ Sbjct: 79 DGVDLSHVPPYQRP---INMMFQSYALFPHMTVEQNIAFGL---KQDKLPKAEIASRVNE 132 Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 +L ++ ++ LSGGQR+R+ +ARSL P +LLDEP +D + + + Sbjct: 133 MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 Query: 202 RDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252 D+ R G+ ++ H+ E +T+ R I++ G + G +EI ++ R Sbjct: 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 108 bits (271), Expect = 2e-24 Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 9/211 (4%) Query: 31 LTKKYN-SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 ++K Y V + V L+++ GE + L GP+GAGKTT ++ G + G ++I G D+ Sbjct: 7 VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66 Query: 90 TKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 ++ P+ RR R+G+ + Q+ + TV EN+ LEV K +++ ++ + L+ Sbjct: 67 NRLRGRQLPLLRR-RIGVVF--QDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 + + LSGG+++R+ IAR++V+ P +L DEP +DP I L++ L Sbjct: 124 QVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183 Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGG 235 RG +++ H++ + + R I+ G Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 108 bits (271), Expect = 2e-24 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 22/220 (10%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98 ++G+ ++ GE + ++GP+G+GK+T ++ G+ SGS+++DG D+ + + R Sbjct: 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ---WDRE 388 Query: 99 RLG--ISYLPQEASIFRGLTVEENILAVLEVYEKDK-------KKRHEKLDSLLKEFNIT 149 G I YLPQ+ +F G TV ENI E + +K HE + L ++ Sbjct: 389 TFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT- 446 Query: 150 KWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 V+ P LSGGQR+R+ +AR+L P ++LDEP + +D + I+ L + Sbjct: 447 ----VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA 502 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 RGI +++ H +L +D+ ++ G + G E++ Sbjct: 503 RGITVVVITHRP-SLLGCVDKILVLQDGRIARFGERDEVL 541 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 107 bits (270), Expect = 2e-24 Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 4/191 (2%) Query: 56 LLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGL 115 LLGP+G GKTT ++ G DSGSI +DG D+T +P + R I+ + Q ++F + Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR---HINMVFQSYALFPHM 57 Query: 116 TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVS 175 TVEEN+ L++ + + + ++ L+ + ++ LSGGQ++R+ +AR+LV Sbjct: 58 TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117 Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAG 234 P +LLDEP + +D + + ++ + + GI + H+ E +T+ DR I+ G Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177 Query: 235 GVLAHGTVQEI 245 + GT +EI Sbjct: 178 KIAQIGTPEEI 188 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 107 bits (268), Expect = 4e-24 Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 7/197 (3%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRR-- 97 V+ ++L + PGEIV L GP+G+GKTT ++ GL GS+K+ G ++ Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKEFNITKWRHVLA 156 R I Y+ Q ++ LT +N+ LE+ ++ E+ ++L+ + Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139 Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITD 215 LSGGQ++R+ IAR+LV P +L DEP A +D + D+ L++ LA +G ILI Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199 Query: 216 HNVHEILTLIDRAYIIH 232 H+ + IL + DR I+H Sbjct: 200 HD-NRILDVADR--IVH 213 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 106 bits (267), Expect = 4e-24 Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%) Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM--PM 94 ++ + V L+V G+I G++G +GAGK+T + L SGS+ +DG D+T + Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76 Query: 95 YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154 +AR I + Q ++ TV N+ LE+ K + K+ LL + Sbjct: 77 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS 136 Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILI 213 LSGGQ++R+ IAR+L S P +L DE + +DP I L++++ R G+ IL+ Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196 Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 H + + + D +I G ++ GTV EI + Sbjct: 197 ITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 105 bits (263), Expect = 1e-23 Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 25 LLSACSLTKKYN-SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 L+ L Y+ S + ++ + ++GPNGAGK+T F G++ SGS+ Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62 Query: 84 IDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 I G ITK + R +G+ + + IF TVE++I D++ ++ S Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSA 121 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 L + + R + LSGG+++R+ IA + P ++LDEP AG+DP + ++ + Sbjct: 122 LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181 Query: 203 DLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 DL G+ ++ + H + + + D Y++ G ++A+GTV+EI D+ Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 104 bits (262), Expect = 2e-23 Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 24/245 (9%) Query: 12 MPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71 + + +S L+ ++K ++ V+ +DL + GE + LLGP+G GKTT ++ Sbjct: 1 SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60 Query: 72 TGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVY 128 G DSG I +DG DIT +P R ++ + Q ++F +TV EN+ L + + Sbjct: 61 AGFETPDSGRIMLDGQDITHVPAENRH---VNTVFQSYALFPHMTVFENVAFGLRMQKTP 117 Query: 129 EKDKKKRHEKLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDE 184 + R +++L L+EF K LSGGQ++R+ IAR++V+ P +LLDE Sbjct: 118 AAEITPR--VMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDE 170 Query: 185 PFAGVD----PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 + +D +++ L R L GI + H+ E LT+ DR ++ G + G Sbjct: 171 SLSALDYKLRKQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 Query: 241 TVQEI 245 T +EI Sbjct: 228 TPREI 232 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 104 bits (261), Expect = 3e-23 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 29/237 (12%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 S + V L ++PGE V ++G G+GK+T ++ GL GS+ +D Sbjct: 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL---------AVLEVYEK----DK 132 G DI ++ R I Y+PQ+ +F G T+ +NI +L E + Sbjct: 526 GVDIRQIDPADL-RRNIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEF 583 Query: 133 KKRHEK-LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 +RH LD + E + LSGGQR+ + +AR+L+ P +LLDEP + +D Sbjct: 584 VRRHPDGLDMQIGERGRS---------LSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 Query: 192 VAISD-IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 + L R LA + + +L+T H +L L+DR ++ G ++A G ++++ Sbjct: 635 RSEERFKDRLKRWLAGKTL-VLVT-HRTS-LLDLVDRIIVMDNGRIVADGPKDQVLE 688 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 104 bits (260), Expect = 3e-23 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 15/243 (6%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +L KK++ V+ G+DL VKPGE+V ++GP+G+GKTT + L ++G+I++ DI Sbjct: 8 NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV--GDI 65 Query: 90 T---------KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140 T + + R+ R + ++ Q ++F TV ENI+ + + + K+ Sbjct: 66 TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA 125 Query: 141 -SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 LL + + LSGGQ++R+ IAR+L P IL DEP + +DP + ++ Sbjct: 126 RELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN 185 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLG 257 IR LA ++I H + + DRA + G ++ G + + + Q R +L Sbjct: 186 TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL- 244 Query: 258 DRF 260 ++F Sbjct: 245 EKF 247 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 103 bits (259), Expect = 4e-23 Identities = 65/236 (27%), Positives = 122/236 (51%), Gaps = 6/236 (2%) Query: 23 DSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81 D +L L Y + + +KG+++ +K GE+ +LG NGAGK+T F + G++ SG Sbjct: 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62 Query: 82 IKIDGNDI---TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138 I DG I K M R +G+ + + +F ++ + + + + + ++ Sbjct: 63 ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKR 121 Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 +D+ LK I + LS GQ++R+ IA LV P ++LDEP AG+DP+ +S+I Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 Query: 199 VLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 L+ ++ G+ I+I H++ + D +++ G V+ G +E+ +++ R Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLR 237 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 102 bits (256), Expect = 1e-22 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 8/192 (4%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L+A +L + +G+ + GE + + GPNG GKTT ++ GL+ DSG ++ + Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60 Query: 86 GNDITKM-PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 G + + R I YL + L+ EN L + ++ L Sbjct: 61 GTALAEQRDEPHR---NILYLGHLPGLKPELSALEN----LHFWAAIHGGAQRTIEDALA 113 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 +T + + A LS GQ+RRL +AR +S +LDEP +D ++ + L+R Sbjct: 114 AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173 Query: 205 ASRGIGILITDH 216 +RG +L+T H Sbjct: 174 LARGGIVLLTTH 185 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 101 bits (254), Expect = 2e-22 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 4/186 (2%) Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT---KM 92 V+KG++ + GE++ LLG NGAGK+T + GL+ SG++ IDG + K Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62 Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152 + RR R+G+ + + +F V++++ + + ++ L + R Sbjct: 63 LLERRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 LSGG+++R+ IA ++ P +LLDEP AG+DP + ++R L + G+ ++ Sbjct: 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVV 181 Query: 213 ITDHNV 218 I+ H+V Sbjct: 182 ISTHDV 187 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 101 bits (253), Expect = 2e-22 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 18/212 (8%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRR 97 D + + + G +G+GKTT ++ GL D G I ++G D K +P +R Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 I Y+ QEA +F L+V N+ + +R + +++ I H+L Sbjct: 76 R---IGYVFQEARLFPHLSVRGNL--RYGMKRARPSERRISFERVIELLGIG---HLLGR 127 Query: 158 L---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILI 213 L LSGG+++R+ I R+L+S P +L+DEP A +D +I + L A GI IL Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187 Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 H++ E+L L DR ++ G V A G + E+ Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 101 bits (253), Expect = 2e-22 Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 22/254 (8%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADS 79 LLSA + Y VK V+L V+ G + L+GP+G GKTTF + + + Sbjct: 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63 Query: 80 GSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKR 135 G I +DG DI P+ R R+G+ + Q+ + F ++V +N++A L++ +D+ Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVF--QKPNPFPTMSVFDNVVAGLKLAGIRDRDHL 121 Query: 136 HEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 E + L+ W V L LSGGQ++RL IAR+L P +L+DEP + + Sbjct: 122 MEVAERSLR--GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSAL 179 Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN- 248 DP + + I L+ DL + I+I HN+H+ + D G ++ HG ++ N Sbjct: 180 DPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238 Query: 249 QDVR-RLYLGDRFA 261 +D R Y+ RF Sbjct: 239 RDERTEAYVSGRFG 252 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 101 bits (253), Expect = 2e-22 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+ GV L + PGE V +LGP+G+GK+T ++TGL+ G + +DG ++ + R R Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409 Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKK--RHEKLDSLLKEF--NITKWRHV 154 IS Q+A +F TV +N+ L + +++ L L+ + Sbjct: 410 --ISVFAQDAHLF-DTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGE 466 Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214 LSGG+R+RL +AR+L++ +LLDEP +D S++ + S ++IT Sbjct: 467 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 Query: 215 DH 216 H Sbjct: 527 HH 528 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 99.7 bits (249), Expect = 7e-22 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 12/203 (5%) Query: 25 LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 LL +L K+Y V+KGV L + GEIV ++G +G+GK+T +++ GL SG Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 Query: 81 SIKIDGNDITKMPMYRRARL-----GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135 + +G ++K+ RA+L G Y Q + T EN+ L + +K K+ Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIY--QFHHLLPDFTALENVAMPLLIGKKSVKEA 118 Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 E+ +L++ + + LSGG+R+R+ IAR+LV+ PS +L DEP +D Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178 Query: 196 DIHVLIRDLAS-RGIGILITDHN 217 I L+ +L L+ H+ Sbjct: 179 IIFDLMLELNRELNTSFLVVTHD 201 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 98.9 bits (246), Expect = 1e-21 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 23/244 (9%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS---IKIDGN 87 L K +N + VDL + GE+V LLGP+G+GK+T ++GLI D + I++ G Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69 Query: 88 DITKMPMY----RRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKDK 132 + + R++R Y+ Q+ ++ L+V EN+L + +++ Sbjct: 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ 129 Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 K+R + L + + H LSGGQ++R+ IAR+L+ IL DEP A +DP Sbjct: 130 KQRALQ---ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186 Query: 193 AISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 + + +RD+ + GI +++T H V L +R + G V G+ Q+ DN+ Sbjct: 187 SARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ-FDNERF 245 Query: 252 RRLY 255 LY Sbjct: 246 DHLY 249 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 98.5 bits (245), Expect = 2e-21 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 10/227 (4%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 +L+ L +Y V+KG++L + GL+G NG GK+T F ++GL+ G++ Sbjct: 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 Query: 85 DGN--DITKMPMYR-RARLGISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEK 138 G D +K + R ++ + E IF ++ +I L L V E + +R Sbjct: 61 QGKPLDYSKRGLLALRQQVATVFQDPEQQIFY-TDIDSDIAFSLRNLGVPEAEITRR--- 116 Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 +D L + +RH LS GQ++R+ IA +LV Y+LLDEP AG+DP + + Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176 Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 +IR + ++G ++I+ H++ I + D Y++ G +L HG E+ Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 98.5 bits (246), Expect = 2e-21 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%) Query: 31 LTKKYN--SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88 ++ Y +K V + GE V +LG NG+GK+T ++TGL+ SG IKIDG Sbjct: 13 VSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT 72 Query: 89 ITKMPM-YRRARLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146 I+K + R ++GI + Q + F G TVE++I LE + KK + +D L K+ Sbjct: 73 ISKENLKEIRKKIGIIF--QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV 130 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + + LSGGQ++R+ IA L P I+ DE + +DP +I ++ DL Sbjct: 131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK 190 Query: 207 RGIGILIT-DHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 LI+ H++ E + L D+ + G ++A G +EI++N+++ Sbjct: 191 TRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEI 235 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 98.2 bits (244), Expect = 2e-21 Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 3/190 (1%) Query: 52 EIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI 111 +I LG NGAGKTT ++TGL+ SG++ + G DI R LG+ PQ + Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC--PQHNIL 1014 Query: 112 FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIAR 171 F LTV E+IL ++ + ++ +++++L++ + R+ A LSGG +R+L +A Sbjct: 1015 FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAI 1074 Query: 172 SLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII 231 + V ++LDEP +GVDP + I L+ S G I+++ H++ E L DR II Sbjct: 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAII 1133 Query: 232 HAGGVLAHGT 241 G + GT Sbjct: 1134 SQGRLYCSGT 1143 Score = 96.2 bits (239), Expect = 7e-21 Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%) Query: 20 ASKDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77 +K +L LTK Y S V + + V+PGE GLLG NGAGKTT F M+TG Sbjct: 1932 GNKTDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV 1991 Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137 SG + G I + + Y PQ +I LT E+ L +Y + + E Sbjct: 1992 TSGDATVAGKSI--LTNISDVHQNMGYCPQFDAIDDLLTGREH----LYLYARLRGVPAE 2045 Query: 138 KLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 +++ + ++ ++ + LA SGG +R+L A +L+ P +LLDEP G+DP A Sbjct: 2046 EIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105 Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + I + G +++T H++ E L R I+ G GT+Q + Sbjct: 2106 RRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 98.1 bits (245), Expect = 2e-21 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 31/208 (14%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++ V V PGE V L+GP+GAGK+T ++ G + GSI ++G + R Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW-R 395 Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEK--LDSLLKEFNITKWRHVLA 156 I+++PQ +F G T+ ENI LA + + + ++ E+ LD + Sbjct: 396 DQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAA----------L 444 Query: 157 PL------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 P LSGGQ +RL +AR+ + +LLDEP A +D + + +R L Sbjct: 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL 504 Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIH 232 A +L+T H + I+ Sbjct: 505 AQGRTVLLVT----HRLALAERADRIVV 528 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 96.8 bits (241), Expect = 5e-21 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 26/243 (10%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89 Y S ++ ++L + E+ +GP+G GK+TF F M + C G + IDG D+ Sbjct: 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 Query: 90 TKMPM---YRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 + RA++G+ + P SI+ + L K+KKK E ++ L Sbjct: 75 YSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK----LHGLAKNKKKLDEIVEKSL 130 Query: 144 KEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197 + W + L LSGGQ++RL IAR++ P+ +L+DEP + +DPVA + I Sbjct: 131 TSVGL--WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188 Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLY 255 LI++L I++T H++ + + DR +G ++ + T QEI N + Y Sbjct: 189 ENLIQELKKNFTIIVVT-HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKRY 247 Query: 256 LGD 258 + D Sbjct: 248 IVD 250 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 96.6 bits (241), Expect = 6e-21 Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 8/231 (3%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 LL + K + V + G L V PG ++ L+G NGAGK+T ++TG+ D+GSI Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63 Query: 85 DGNDIT-KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK----DKKKRHEKL 139 G ++T P + GI + QE ++ LT+ ENI E + D KK + + Sbjct: 64 LGKEVTFNGPKSSQEA-GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA 122 Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPS-YILLDEPFAGVDPVAISDIH 198 D LL N+ L LS G+++ +EIA+ L SF S I++DEP + + Sbjct: 123 DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL-SFESKVIIMDEPTDALTDTETESLF 181 Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 +IR+L S+G GI+ H + EI + D + G +A V ++ ++ Sbjct: 182 RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS 232 Score = 78.9 bits (195), Expect = 1e-15 Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 10/204 (4%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100 V V ++ GEI+G+ G GAG+T ++ G + SG + +DG+++ Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 Query: 101 GISYLPQEAS---IFRGLTVEENI-LAVLEVYEK-----DKKKRHEKLDSLLKEFNI-TK 150 GI Y+ ++ + G++V+EN+ L L + + + + ++ FNI T Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387 Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 LLSGG ++++ IAR L++ P ++LDEP GVD A +I+ LI + G+ Sbjct: 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS 447 Query: 211 ILITDHNVHEILTLIDRAYIIHAG 234 I++ + E+L + DR ++H G Sbjct: 448 IILVSSEMPEVLGMSDRILVMHEG 471 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 95.8 bits (239), Expect = 9e-21 Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 28/237 (11%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG----LICADSGS 81 L L ++KGV+L VK GEI ++GPNG+GK+T + G + SG+ Sbjct: 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT--SGT 58 Query: 82 IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS 141 I G D+ ++ RAR G+ Q G++ E + + L + + L Sbjct: 59 ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD 118 Query: 142 LLKEFNITKWRHVLAPL--------------LSGGQRRRLEIARSLVSFPSYILLDEPFA 187 LK + LA L SGG+++R EI + + P +LDE + Sbjct: 119 FLKLL-----KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173 Query: 188 GVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTV 242 G+D A+ + I L LI H +L I D +++ G ++ G V Sbjct: 174 GLDIDALKIVAEGINRLREPDRSFLIITHY-QRLLNYIKPDYVHVLLDGRIVKSGDV 229 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 95.8 bits (239), Expect = 1e-20 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 17/231 (7%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKID 85 L Y +K ++L + ++ L+GP+G GK+T M L+ G + D Sbjct: 7 LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFD 66 Query: 86 GNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDS 141 G DI + R R+G+ + Q+ + F +++ +NI ++ KDKK+ E ++ Sbjct: 67 GQDIYDKKIDVVELRRRVGMVF--QKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEE 123 Query: 142 LLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197 LK+ ++ K R H A LSGGQ++RL IAR+L P +LLDEP + +DP+A I Sbjct: 124 SLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI 183 Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 LI++L + I+I HN+ + + DR + G ++ +G ++I N Sbjct: 184 EELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 94.3 bits (235), Expect = 3e-20 Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 23/222 (10%) Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTF-----FYMMTGLICADSGSIKIDGNDITKMPMYR 96 K V KPGE++ ++G +GAGKTT F G+ SGS+ ++G I M Sbjct: 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKG--SGSVLLNGMPIDAKEMRA 99 Query: 97 RARLGISYLPQEASIFRGLTVEE--NILAVLEVYEK-DKKKRHEKLDSLLKEFNITKWRH 153 + +Y+ Q+ LTV E A L + + KK++ E++D +L+ + K + Sbjct: 100 IS----AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155 Query: 154 VL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLAS 206 LSGG+R+RL A L++ P + DEP +G+D +A S + VL + LA Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL-KGLAQ 214 Query: 207 RGIGILITDHN-VHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 +G I+ T H E+ L D+ ++ G V G+ + + Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 93.4 bits (233), Expect = 5e-20 Identities = 53/192 (27%), Positives = 103/192 (53%), Gaps = 7/192 (3%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++KK+ ++ ++L ++ G++ ++G +G+GK+T ++ L DSG + ++G + Sbjct: 4 ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63 Query: 91 KMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 + +RR +LG YL Q ++ TVEEN+ L+ + KK++ EK L++ Sbjct: 64 PLNSKKASKFRREKLG--YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEK 121 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + LSGG+++R+ +AR+++ P IL DEP +DP ++ L+ +L Sbjct: 122 VGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELN 181 Query: 206 SRGIGILITDHN 217 G I+I H+ Sbjct: 182 DEGKTIIIVTHD 193 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 93.3 bits (232), Expect = 6e-20 Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 3/212 (1%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RAR 99 +KG+ L + G LLGPNGAGK+T + G+ G +K+ G ++ R++ Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159 +G+ + + +F TV +++ DK + +++ LK + +R L Sbjct: 81 VGLVFQDPDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219 S GQ++R+ IA L P I+LDEP A +DP + ++ L ++G +++ H+V Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199 Query: 220 EILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 D+ ++ G VLA G ++ ++D+ Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK-SLLTDEDI 230 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 92.0 bits (228), Expect = 1e-19 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 19/241 (7%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICAD--SGSIKIDGNDI 89 Y + +KG+ + ++ +V +GP+G GK+TF F M LI A G I+IDG +I Sbjct: 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72 Query: 90 -TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFN 147 K R + + Q + F ++ EN+ L V KD ++++ LK Sbjct: 73 YDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKG-- 129 Query: 148 ITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 W V L LSGGQ++RL IAR++ PS +L+DEP + +DP++ + + LI Sbjct: 130 AALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLGDR 259 +L + I+I HN+ + + D+ + G ++ + ++I N ++ + Y+ R Sbjct: 190 HEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYITGR 248 Query: 260 F 260 F Sbjct: 249 F 249 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 91.8 bits (228), Expect = 2e-19 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 11/219 (5%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-CAD-SGSI 82 LL + K + V + G+DL V+PGE VGL G NGAGK+T +++G+ G I Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60 Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK-------KR 135 G+ + + R GI + QE ++ L+V ENI E+ + R Sbjct: 61 YWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR 120 Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 + L L+ R V GGQ++ +EIA++L ++LDEP + + Sbjct: 121 AKNLLRELQLDADNVTRPVGD--YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178 Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234 + +IRDL + G+ + H ++E+ + D +I G Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217 Score = 79.5 bits (196), Expect = 8e-16 Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 22/224 (9%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA----DSGSIKIDGNDITKMPMYR 96 V V ++ GEI+G+ G GAG+T ++ L A G++ I+G + + Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTE---LVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332 Query: 97 RARLGISYLPQEAS---IFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFNI 148 R GI+ +P++ I L V +NI L+VL+ + D + + S ++ + Sbjct: 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392 Query: 149 TKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 K P+ LSGG +++ +A+ L++ P ++LDEP GVD A +I+ LI LA Sbjct: 393 -KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLA----HGTVQEII 246 G+ I++ + E+L L DR +I G + H QE + Sbjct: 452 EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQV 495 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 91.7 bits (228), Expect = 2e-19 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 19/219 (8%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT----KMPMYRRAR 99 V++ ++ GE VGL+G G+GK+T + GL+ SG I IDG DIT K+ R+ + Sbjct: 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK-K 84 Query: 100 LGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153 +G+ + E +F T+E++I L + E +++ KR + L E K Sbjct: 85 VGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK--- 140 Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211 +P LSGGQ+RR+ IA + P ++LDEP AG+DP +I I++L + I Sbjct: 141 --SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 ++ H++ ++ L DR +++ G GT +E+ + Sbjct: 199 ILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 91.9 bits (228), Expect = 2e-19 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 13/217 (5%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLG-ISYLP 106 V G I L+G NG+GK+T F + G + SG I I G P + + ++Y+P Sbjct: 30 VPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG-----QPTRQALQKNLVAYVP 84 Query: 107 QEASIFRGLTVEENILAVLEVY------EKDKKKRHEKLDSLLKEFNITKWRHVLAPLLS 160 Q + V + ++ Y + KK+ + + + L ++ ++RH LS Sbjct: 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELS 144 Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220 GGQ++R+ +AR++ ILLDEPF GVD + I L+R+L G +L++ HN+ Sbjct: 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257 + D ++ G VLA G + +++ + G Sbjct: 205 VTEFCDYTVMVK-GTVLASGPTETTFTAENLELAFSG 240 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 91.6 bits (227), Expect = 2e-19 Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 4/212 (1%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP---MYRR 97 VK L ++ GEI ++G +G+GK+T ++ LI G + IDG DI K+ + Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 R I+ + Q ++ +TV +N +E+ + ++R EK L++ + + H Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163 Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGILITDH 216 LSGG R+R+ +AR+L P +L+DE F+ +DP+ +++ L++ A I+ H Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223 Query: 217 NVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 ++ E + + DR I+ G V+ GT EI++N Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 91.7 bits (228), Expect = 2e-19 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 2/227 (0%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +++K + V+ +DL + GE+V ++GP+G+GK+T + L SG + +DG + Sbjct: 6 NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV 65 Query: 90 TKMPMYRRA-RLGISYLPQEASIFRGLTVEENIL-AVLEVYEKDKKKRHEKLDSLLKEFN 147 + R R + Q+ +F LT EN++ L V K++ ++ LL + Sbjct: 66 NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG 125 Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207 + + H LSGGQ++R+ IAR+L P +L DEP + +DP ++ +++DLA Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185 Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254 G+ ++I H + + R I G + G Q +I N +RL Sbjct: 186 GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRL 232 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 91.3 bits (227), Expect = 2e-19 Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 4/226 (1%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80 ++ + + ++TK++ S V+ ++L +K G +V LLGP+G GKTT ++ GL G Sbjct: 2 TQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61 Query: 81 SIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140 I IDG D+T + +R I + Q ++F +++ EN+ L++ K++R +++ Sbjct: 62 QIFIDGEDVTHRSIQQR---DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK 118 Query: 141 SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200 L+ ++ + +SGGQ++R+ +AR+L+ P +L DEP + +D + Sbjct: 119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK 178 Query: 201 IRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 IR+L + I L H+ E + D +++ G ++ G+ QE+ Sbjct: 179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 91.5 bits (228), Expect = 2e-19 Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 8/192 (4%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L L + G+ + GE + L GPNG+GKTT ++ GL+ +G+IK+D Sbjct: 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD 62 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 G DI YL ++ LTV EN LE + + + L+ Sbjct: 63 GGDID----DPDVAEACHYLGHRNAMKPALTVAEN----LEFWAAFLGGEELDIAAALEA 114 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + H+ LS GQ+RR+ +AR LVS +LDEP A +D A++ LIR Sbjct: 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174 Query: 206 SRGIGILITDHN 217 ++G ++ H Sbjct: 175 AQGGIVIAATHI 186 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 90.9 bits (226), Expect = 3e-19 Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 31/223 (13%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRA 98 + G++L V+PGE V L+GP+GAGK+T F ++ SG I +DG D+ ++ P RA Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414 Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKL-------DSLLK 144 R+ + +PQ+ +F +V ENI EV + HE + D+ L Sbjct: 415 RMAL--VPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRD 203 E +T LSGGQR+R+ IAR+++ +LLDE + +D A S+ V + Sbjct: 472 ERGVT---------LSGGQRQRIAIARAILKDAPILLLDEATSALD--AESEQLVQQALE 520 Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 +G LI H + +L DR ++ G ++A GT E+I Sbjct: 521 TLMKGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELI 562 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 91.0 bits (227), Expect = 3e-19 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 15/227 (6%) Query: 30 SLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 +++K + +++ + V L++ GEI G++G +GAGK+T + L SG + +D Sbjct: 6 NISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVD 65 Query: 86 GNDITKM--PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 G D+T + R+AR I + Q ++ TV +N+ LE+ K + ++ LL Sbjct: 66 GQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELL 125 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 + ++ LSGGQ++R+ IAR+L S P +L DE + +DP I L++D Sbjct: 126 ELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185 Query: 204 LASR-GIGI-LITDHNVHE---ILTLIDRAYIIHAGGVLAHGTVQEI 245 + G+ I LIT HE + + DR +I AG ++ GTV E+ Sbjct: 186 INRELGLTIVLIT----HEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 91.0 bits (226), Expect = 3e-19 Identities = 53/197 (26%), Positives = 104/197 (52%), Gaps = 8/197 (4%) Query: 31 LTKKYNSVY--VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88 ++K Y + + ++ ++ GE+V L+G +GAGK+TF ++ G+ G I+ +G D Sbjct: 7 VSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQD 66 Query: 89 ITKMPMYR----RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 +T++ R +G+ + Q+ + TV +N+ L + + +E++ + L+ Sbjct: 67 LTRLRGREIPFLRRHIGMVF--QDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALE 124 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 + + H L LSGG+++R+ IAR++V P +L DEP +DP DI L + Sbjct: 125 KVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF 184 Query: 205 ASRGIGILITDHNVHEI 221 RG +L+ H+++ + Sbjct: 185 NRRGTTVLVATHDINLV 201 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 90.5 bits (225), Expect = 3e-19 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 + K + V+ + L + G++V LLGP+G+GKTT ++ GL SG I+ G D++ Sbjct: 8 IKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS 67 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVYEK-DKKKRHEKLDSLLKEF 146 ++ R ++G + Q ++FR +TV +NI L VL E+ + K+ LL+ Sbjct: 68 RLHARDR-KVGFVF--QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV 124 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + LSGGQ++R+ +AR+L P +LLDEPF +D ++ +R L Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184 Query: 207 --RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + + +T H+ E + + DR ++ G + GT ++ Sbjct: 185 ELKFTSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 89.8 bits (223), Expect = 6e-19 Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 19/213 (8%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMY 95 +KGV+L ++ GE + L+G +G GK+T +++GL SG + ++G IT +M ++ Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60 Query: 96 RRARLGISYLPQEASIFRGLTVEENI-LAVLEV-YEKDKKKRHEKLDSLLKEFNITKWRH 153 Q S+ LTV ENI LAV V + K +R ++ + +T+ Sbjct: 61 -----------QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD 109 Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGIL 212 LSGG ++R+ IAR+L P +LLDEPF +D + ++ L++ + +L Sbjct: 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + H+V E L L DR ++ G G + E+ Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 88.9 bits (221), Expect = 1e-18 Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 6/195 (3%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-- 87 + Y + + + L GE + LLGP+GAGK++ ++ L SG++ I GN Sbjct: 7 GINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 Query: 88 DITKMP---MYRRARLGISYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLL 143 D +K P R R + + Q+ +++ LTV++N I A V K + + + LL Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLL 126 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 + + + LSGGQ++R+ IAR+L+ P +L DEP A +DP + I +IR+ Sbjct: 127 ERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 Query: 204 LASRGIGILITDHNV 218 LA GI +I H V Sbjct: 187 LAETGITQVIVTHEV 201 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 89.0 bits (221), Expect = 1e-18 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 23/243 (9%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89 Y +K ++L ++ ++ L+GP+G GK+TF M LI G + +DG DI Sbjct: 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 Query: 90 TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145 K + R R+G+ + Q+ + F +++ +N+ + KDKKK E ++ LK Sbjct: 73 YKSDIDVNQLRKRVGMVF--QQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG 129 Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 + W V L LSGGQ++RL IAR+L P +L+DEP + +DP++ I Sbjct: 130 AAL--WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE 187 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257 LI++L + I+I HN+ + + D+ G ++ G ++ N +R Y+ Sbjct: 188 LIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKRTEDYIT 246 Query: 258 DRF 260 RF Sbjct: 247 GRF 249 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 88.1 bits (218), Expect = 2e-18 Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 18/245 (7%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 L+ L K+Y V+KGV L G+++ ++G +G+GK+TF + L GSI ++ Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 Query: 86 GNDIT--------------KMPMYRRARLGISYLPQEASIFRGLTVEENIL-AVLEVYEK 130 G I R RL + + Q +++ +TV EN++ A ++V Sbjct: 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF--QHFNLWSHMTVLENVMEAPIQVLGL 123 Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 K++ E+ L + I + P+ LSGGQ++R+ IAR+L P +L DEP + + Sbjct: 124 SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183 Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 DP + ++ +++ LA G +++ H + + +H G + G +++ N Sbjct: 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNP 243 Query: 250 DVRRL 254 RL Sbjct: 244 QSPRL 248 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 88.0 bits (218), Expect = 2e-18 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 25/235 (10%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 + L+ ++ V+ GVDL V+ G +VGL+GPNGAGKTT + G + +G++ + Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63 Query: 86 GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS---- 141 G+D+ + +R ++ +PQ+ S+ V V+E+ + R + Sbjct: 64 GDDVEALSARAASRR-VASVPQDTSLSFEFDVR----QVVEMGRTPHRSRFDTWTETDRA 118 Query: 142 ----LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197 ++ + ++ LSGG+R+R+ +AR+L +LLDEP A + DI Sbjct: 119 AVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL------DI 172 Query: 198 H------VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 + L+R L G + H++ D ++ G V A G +++ Sbjct: 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 87.9 bits (218), Expect = 3e-18 Identities = 61/223 (27%), Positives = 116/223 (52%), Gaps = 12/223 (5%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-R 97 ++K + + + G I ++GP+GAGK+T ++ LI GSI IDG DI + + R Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK-WRHVLA 156 ++G+ + Q+ +F G TV++NI E K +++ ++ L + K + Sbjct: 77 RKIGMVF--QQPHLFEG-TVKDNI----EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDV 129 Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITD 215 LSGG+ +R+ IAR+L + P +LLDEP + +DP + I LI L ++ + ++ Sbjct: 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189 Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYL 256 HN+ + + D ++ G ++ + + N +V +L++ Sbjct: 190 HNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 87.6 bits (218), Expect = 3e-18 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 18/192 (9%) Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRARLG 101 G+ + GE+V + GPNGAGKT+ ++ GL D+G + G I + Y + L Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL- 77 Query: 102 ISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158 YL + I LT EN+ + + + L L + + + V Sbjct: 78 --YLGHQPGIKTELTALENLRFYQRLHGPGDDE------ALWEALAQVGLAGFEDVPVRQ 129 Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHN 217 LS GQ+RR+ +AR ++ +LDEPF +D ++ + L+ A + G+ IL T Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT--- 186 Query: 218 VHEILTLIDRAY 229 H+ L + Sbjct: 187 -HQDLPVASDKV 197 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 87.4 bits (217), Expect = 3e-18 Identities = 64/246 (26%), Positives = 129/246 (52%), Gaps = 7/246 (2%) Query: 22 KDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79 K+ ++ ++ +Y + Y +K V V GE V ++G NG+GK+T ++ GL+ ++ Sbjct: 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61 Query: 80 GSIKIDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138 G+I + G +++ ++ R ++G+ + + F G TV++++ LE +++ E+ Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQ-FVGATVQDDVAFGLENIGVPREEMVER 120 Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 +D L++ + + + LSGGQ++R+ IA L P I+LDE + +DP ++ Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180 Query: 199 VLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID-NQDVRRLYL 256 +R L +GI +L H++ E DR +++ G +L GT +EI ++ + L Sbjct: 181 ETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGL 239 Query: 257 GDRFAF 262 F+ Sbjct: 240 DVPFSV 245 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 87.2 bits (216), Expect = 4e-18 Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 29/261 (11%) Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI- 75 + + +LS +L Y + + + + + + L+GP+G GK+T F M LI Sbjct: 1 MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60 Query: 76 -CADSGSIKIDGNDITKM---PMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVY 128 C +G I +G +I + R ++G+ + P SI+ EN+ ++ Sbjct: 61 GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIY------ENVAYGPRIH 114 Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181 EK+KK ++ LK + W V L LSGGQ++RL IAR+L P IL Sbjct: 115 GEKNKKTLDTIVEKSLKGAAL--WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL 172 Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241 +DEP + +DP+A + I LI DL I++T HN+ + + D ++ G ++ Sbjct: 173 MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT-HNMQQAARVSDYTGFMYLGKLIEFDK 231 Query: 242 VQEIIDN--QDVRRLYLGDRF 260 +I +N +++ Y+ RF Sbjct: 232 TTQIFENPHEELTENYITGRF 252 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 86.4 bits (215), Expect = 6e-18 Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 26/224 (11%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+KG+ L +K GE V LLG G GK+T ++T G I ++G I Y A Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD---YSEAA 411 Query: 100 L--GISYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156 L IS + Q +F T+ +N +LA E L +L++ + K Sbjct: 412 LRQAISVVSQRVHLFSA-TLRDNLLLA-------APNASDEALIEVLQQVGLEKLLEDDK 463 Query: 157 PL----------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 L LSGG++RRL IAR+L+ +LLDEP G+D I L+ + A Sbjct: 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ 523 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 ++IT H + L DR ++ G ++ GT QE++ Q Sbjct: 524 NKTVLMIT-HRLTG-LEQFDRICVMDNGQIIEQGTHQELLAQQG 565 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 86.4 bits (214), Expect = 7e-18 Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 7/192 (3%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 LL+A +L N V +D +V GE + + G NGAGKTT ++ GL+ +SG I+I Sbjct: 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 DG T+ R+R ++YL + L+ EN+ + ++ + K+ S L Sbjct: 71 DGKTATRG---DRSRF-MAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP---GSALA 123 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204 + + L LS GQ++RL +AR +S LLDEP+A +D I+ ++ +I Sbjct: 124 IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183 Query: 205 ASRGIGILITDH 216 G L+T H Sbjct: 184 LRGGGAALVTTH 195 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 86.4 bits (214), Expect = 7e-18 Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 8/216 (3%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI-DGN---DITKMP--M 94 V L ++ GEI L+G +G+GK++ + GL GS+ + DG+ D+ Sbjct: 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAAT 99 Query: 95 YRRARLG-ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153 RR R +S + Q+ ++ LTVEEN+ LE+ + +R +++D L+ + +W Sbjct: 100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD 159 Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGIL 212 LSGG ++R+ +AR+ +L+DEPF+ +DP+ + + L+ A I+ Sbjct: 160 KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTII 219 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 H++ E L + +R I+ G ++ HGT +EI+ N Sbjct: 220 FVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 86.4 bits (214), Expect = 7e-18 Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 12/209 (5%) Query: 21 SKDSLLSACSLTKKYN----SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76 LL +L K+Y V+ V + GE++ ++G +G+GK+T +++ GL Sbjct: 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 Query: 77 ADSGSIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131 SG + +G ++K+ R +LG Y Q + T EN+ L + +K Sbjct: 61 PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIY--QFHHLLPDFTALENVAMPLLIGKKK 118 Query: 132 KKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 + + + +L + + LSGG+R+R+ IAR+LV+ P +L DEP +D Sbjct: 119 PAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178 Query: 192 VAISDIHVLIRDLASR-GIGILITDHNVH 219 I L+ +L G L+ H++ Sbjct: 179 RNADSIFQLLGELNRLQGTAFLVVTHDLQ 207 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 86.4 bits (214), Expect = 7e-18 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 14/238 (5%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +TK++ + V+ G++ V GE V L+GP+G+GK+T ++ L D G I+++G + Sbjct: 5 DVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQL 64 Query: 90 TKMPM------------YRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRH 136 MP R+ R I + Q ++F TV +N+ A + V + + Sbjct: 65 YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE 124 Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 ++ LL + + LSGGQ++R+ IAR+L P +L DE + +DP + + Sbjct: 125 KRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184 Query: 197 IHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 + +IR LAS + +L+ H + DR G ++ G EI R Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEER 242 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 86.1 bits (213), Expect = 9e-18 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 19/239 (7%) Query: 24 SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CAD 78 + + L + V V+ GV+L + I L+GP+G+GK+T + LI Sbjct: 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61 Query: 79 SGSIKIDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE--KDKKKR 135 SG + +DG DI KM + R R+ + + Q + L++ EN+ L++ K KK+ Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVF--QIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119 Query: 136 HEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 E++ L++ + W V L LSGGQ++RL IAR+L P +L DEP A + Sbjct: 120 QERVRWALEKAQL--WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177 Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 DP + I L +L + + I++ H + + D ++ G ++ G +E+ N Sbjct: 178 DPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 86.0 bits (213), Expect = 1e-17 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 24/265 (9%) Query: 13 PEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY--- 69 P +S ++++ A L Y + V + + ++ ++GP+G GK+TF Sbjct: 27 PSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN 86 Query: 70 MMTGLI--CADSGSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAV 124 M LI G + G ++ P+ R R+G+ + Q+ + F ++ +N+ Sbjct: 87 RMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVF--QKPNPFPK-SIYDNVAYG 143 Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPS 178 L++ D E+++ L+ + W V L LSGGQ++RL IAR++ P Sbjct: 144 LKIQGYDGDI-DERVEESLRRAAL--WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPE 200 Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238 IL+DEP + +DPVA S I LI +LA +++T HN+ + + D+ + GG L Sbjct: 201 VILMDEPASALDPVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTGGELV 259 Query: 239 H-GTVQEIIDNQDVRRL--YLGDRF 260 +I +N + +R+ Y+ +F Sbjct: 260 EFDDTDKIFENPESQRVEDYITGKF 284 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 85.9 bits (212), Expect = 1e-17 Identities = 68/256 (26%), Positives = 131/256 (51%), Gaps = 23/256 (8%) Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CA 77 ++++SA + Y + + G+ L + E+ L+GP+G GK+TF + + Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61 Query: 78 DSGSIKIDGNDI--TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKK 133 +G IK +G +I +KM + R +G+ + Q+ + F +V +N+ L++ KDK+ Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVF--QQPTPFP-FSVYDNVAYGLKIAGVKDKE 118 Query: 134 KRHEKLDSLLKEFNITKWRHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187 ++++ LK+ I W+ A SGGQ++R+ IAR+L P +LLDEP + Sbjct: 119 LIDQRVEESLKQAAI--WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176 Query: 188 GVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 +DP++ S+I + +L + I++T HN+ + + D+ + G ++ G +E+ Sbjct: 177 ALDPISSSEIEETLMELKHQYTFIMVT-HNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235 Query: 248 N--QDVRRLYLGDRFA 261 + + YL RF Sbjct: 236 APKKQITSDYLNGRFG 251 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 85.1 bits (210), Expect = 1e-17 Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 19/220 (8%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN------DITKMP 93 ++K + + + I G++GP+G+GK+T ++ LI IK+DG DI ++ Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 Query: 94 MYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKW 151 + R +G+ + Q+ + F L++ +NI L+ + K+K++ + ++ L++ + W Sbjct: 85 AIKLRKEVGMVF--QQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL--W 140 Query: 152 RHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + V A LSGGQ++RL IAR+L P +L+DEP + +D V I LI +L Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + I I+I HN ++ + D ++ G ++ G+ EI Sbjct: 201 NE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 85.1 bits (211), Expect = 2e-17 Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 5/217 (2%) Query: 32 TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK 91 ++ + V+L VK GE + +LG NG+GK+T M L+ G + +DG D + Sbjct: 17 NEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD 76 Query: 92 MPMYR--RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 R + G+ + + I + VEE++ E ++ E++D LK+ + Sbjct: 77 EENLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFGPENLGIPPEEIRERVDESLKKVGMY 135 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208 ++R LLSGGQ++R+ IA L P I+ DEP A +DP ++ I++L + G Sbjct: 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG 195 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 I I++ H + E + DR ++ +G V+ GT +EI Sbjct: 196 ITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 85.2 bits (211), Expect = 2e-17 Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 38/251 (15%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89 Y + VDL + + +GP+G GK+TF M I C +G I +DG DI Sbjct: 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88 Query: 90 TKM---PMYRRARLGISYL---PQEASIFRGLTVEENI--------LAVLEVYEKDKKKR 135 + RAR+G+ + P SI+ EN+ LA + K + Sbjct: 89 YDPRLDVVELRARVGMVFQKPNPFPKSIY------ENVAYGPRIHGLA------RSKAEL 136 Query: 136 HEKLDSLLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 E +++ L++ + K R H LSGGQ++RL IAR++ P IL+DEP + +DP Sbjct: 137 DEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP 196 Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 +A + + LI +L I+I H++ + + R H G ++ G +++ N D Sbjct: 197 IATAKVEELIDELRQN-YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDD 255 Query: 252 RRL--YLGDRF 260 R Y+ RF Sbjct: 256 PRTQDYITGRF 266 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 84.9 bits (210), Expect = 2e-17 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 21/230 (9%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGNDI 89 Y S +V+KGVDL + + L+GP+G GK+T L+ + G +++ G +I Sbjct: 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73 Query: 90 TKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE--KDKKKRHEKLDSLLK 144 P+ R +G+ + Q + F LT+ +N+ +++ K KK+ E+++ LK Sbjct: 74 YSPDVDPIEVRREVGMVF--QYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131 Query: 145 EFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 + W V L LSGGQR+RL IAR+L P +L+DEP A +DPV + I Sbjct: 132 K--AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189 Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 L+ +L +L+T H+ + + D ++ G ++ G +++ +N Sbjct: 190 ELLFELKKEYTIVLVT-HSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 84.5 bits (209), Expect = 2e-17 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 16/254 (6%) Query: 9 GIEMPEFQENRASKDSLLSACSLTKKYNSV-----YVVKGVDLYVKPGEIVGLLGPNGAG 63 G+ E + + ++ +++K+Y SV V V L VK GEI G++G +GAG Sbjct: 263 GVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAG 322 Query: 64 KTTFFYMMTGLICADSGSIKI----DGNDITKM-PMYR-RARLGISYLPQEASIFRGLTV 117 KTT ++ G++ SG + + + D+TK P R RA+ I L QE ++ TV Sbjct: 323 KTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382 Query: 118 EENILAVLEVYEKDKKKRHEKLDSL-LKEFNITKWRHVLAPL---LSGGQRRRLEIARSL 173 +N+ + + D+ R + + +L + F+ K +L LS G+R R+ +A+ L Sbjct: 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVL 442 Query: 174 VSFPSYILLDEPFAGVDPVAISDI-HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIH 232 + P ++LDEP +DP+ D+ H +++ +I H++ +L + DRA ++ Sbjct: 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502 Query: 233 AGGVLAHGTVQEII 246 G ++ G +EI+ Sbjct: 503 DGKIVKIGDPEEIV 516 Score = 81.8 bits (202), Expect = 2e-16 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 36/252 (14%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL---------------I 75 LTKK++ V+K + ++ GE++G+LG +GAGK+ +++ G+ + Sbjct: 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVAL 65 Query: 76 CADSGSIKID----------GNDITKM---------PMYRRARLGISYLPQEA-SIFRGL 115 C G ++ G + + RR R I+ + Q +++ Sbjct: 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD 125 Query: 116 TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVS 175 TV +N+L LE + K+ + L++ ++ +A LSGG+++R+ +AR L Sbjct: 126 TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAK 185 Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAG 234 P L DEP +DP +H + + + GI +++T H I L D+A + G Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245 Query: 235 GVLAHGTVQEII 246 + GT E++ Sbjct: 246 EIKEEGTPDEVV 257 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 84.1 bits (208), Expect = 3e-17 Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 44/281 (15%) Query: 14 EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY---M 70 E+ + D+ LS L Y + +KGV + + + L+GP+G GK+TF Sbjct: 34 EWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93 Query: 71 MTGLICAD--SGSIKIDGNDI-------------------TKMPMYRRARLGISYLPQE- 108 M I A GS+++DG DI + P + R ISY P++ Sbjct: 94 MNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKH 153 Query: 109 ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGG 162 I GL LA L + DK E ++ L++ + W V L LSGG Sbjct: 154 GDINTGL------LARL-LGRDDKDAEDELVERSLRQAAL--WDEVNDRLDDNALGLSGG 204 Query: 163 QRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEIL 222 Q++RL IAR L P IL+DEP + +DP+A S I LI +LA +++T HN+ + Sbjct: 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT-HNMQQAA 263 Query: 223 TLIDRAYIIHAGGVLA-HGTVQEIIDNQDVRRL--YLGDRF 260 + D+ + GG L + +I +N + +R+ Y+ +F Sbjct: 264 RISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYITGKF 304 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 84.1 bits (208), Expect = 3e-17 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 25/247 (10%) Query: 24 SLLSACSLTKKYNS---------VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74 SLL +T Y + V+ V L ++ GE VGLLG +G GK+T ++ GL Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 Query: 75 ICADSGSIKIDGNDITKM-PMYRRA-RLGISYLPQEA--SIFRGLTVEENILAVLEVYEK 130 G++ G D+ ++ RRA R + + Q++ ++ +TV + I L Sbjct: 61 EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS 120 Query: 131 -DKKKRHEKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAG 188 D+ ++ ++ LL + ++ L LSGGQ +R+ IAR+L P I+LDE + Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180 Query: 189 VDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 +D V + I L+R L G L H++ + + R ++ G +I++ Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG---------QIVE 231 Query: 248 NQDVRRL 254 DV +L Sbjct: 232 ECDVAQL 238 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 83.5 bits (206), Expect = 5e-17 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 20/232 (8%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICADSGSIKIDGNDITKMPMYR-RAR 99 +++ ++ +I L+G +G GK+TF F M I G ++I+G D+ + R Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE--------KLDSLLKEFNITKW 151 +G+ + Q+ ++F ++ ENI +++ K K E + L +E Sbjct: 81 VGMVF--QQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137 Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211 ++ LA LSGGQ++RL IAR+L P +LLDEP + +DP++ I L+++L S + + Sbjct: 138 QNALA--LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSM 194 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLGDRFA 261 ++ HN+ + + D H G ++ G +E +N Q+ + YL F Sbjct: 195 IMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLSGAFG 246 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 83.5 bits (206), Expect = 5e-17 Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 22/243 (9%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLICAD--SGSIKIDGNDI 89 + + VK V + + ++GP+G GK+T M L+ + +G I +D DI Sbjct: 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 Query: 90 TKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKE 145 P+ R R+G+ + Q+ + F +++ +N++A ++ + ++ + E ++S LK Sbjct: 74 YDRGVDPVSIRRRVGMVF--QKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKR 131 Query: 146 FNITKWRHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 + W V A LSGGQ++RL IAR++ P IL+DEP + +DP++ I Sbjct: 132 --VALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE 189 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257 LI +L + I+I HN+ + + D + G ++ G ++I + ++ Y+ Sbjct: 190 LIEELKEK-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTEDYIT 248 Query: 258 DRF 260 RF Sbjct: 249 GRF 251 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 83.2 bits (206), Expect = 6e-17 Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 34/196 (17%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+ V L +KPG+I+ LLGPNGAGK+T ++ GL+ D G IK R + Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK------------RNGK 66 Query: 100 LGISYLPQEASI--FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL-A 156 L I Y+PQ+ + LTV + ++D +L + H++ A Sbjct: 67 LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED----------ILPALKRVQAGHLIDA 116 Query: 157 PL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD---PVAISD-IHVLIRDLASRGIG 210 P+ LSGG+ +R+ +AR+L++ P ++LDEP GVD VA+ D I L R+L Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL---DCA 173 Query: 211 ILITDHNVHEILTLID 226 +L+ H++H ++ D Sbjct: 174 VLMVSHDLHLVMAKTD 189 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 83.2 bits (206), Expect = 7e-17 Identities = 61/256 (23%), Positives = 117/256 (45%), Gaps = 42/256 (16%) Query: 31 LTKKYNS-----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 + K +N + + V + + GE + ++G G+GKTTF + L+ D+G+I+ Sbjct: 8 IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67 Query: 86 GND-----------------ITKMPMYR--------RARLGISYLPQEASIFRGLTVEEN 120 D + + ++ R R+G+ + E +F T+E++ Sbjct: 68 FKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKD 126 Query: 121 IL---AVLEVYEKDKKKRHEKLDSL--LKEFNITKWRHVLAPL-LSGGQRRRLEIARSLV 174 I+ + V +++ KKR K L L E + + +P LSGGQ+RR+ +A L Sbjct: 127 IIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR-----SPFELSGGQKRRVALAGILA 181 Query: 175 SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234 P +++ DEP AG+DP + +I + +L +G I++ H++ +L R G Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241 Query: 235 GVLAHGTVQEIIDNQD 250 ++ G +I+ + Sbjct: 242 KIIKDGDTYDILSDNK 257 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 82.8 bits (205), Expect = 8e-17 Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 19/226 (8%) Query: 37 SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-MY 95 V V+KG+ + PGE+V L+GP+G+GK+T ++ L G + +DG + + Y Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLLKEFNITKWR 152 ++ + + QE +F G +V ENI L ++ K + EF Sbjct: 553 LHRQVAL--VGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT 609 Query: 153 HV--LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 V LSGGQ++R+ IAR+LV P ++LDE + +D + R ASR + Sbjct: 610 EVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD-AECEQLLQESRSRASRTV- 667 Query: 211 ILITDHNVHEILTLIDRA---YIIHAGGVLAHGTVQEIIDNQDVRR 253 +LI L+ ++RA ++ G V+ GT ++++++Q + Sbjct: 668 LLIAHR-----LSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 82.3 bits (203), Expect = 1e-16 Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 27/232 (11%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS-------GSIKIDGN 87 Y VK V + + +I ++GP+G GKTT + + D G I G Sbjct: 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--NDHIPGFRVEGKIYFKGQ 70 Query: 88 DITK----MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSL 142 DI + YR+ ++G+ + Q+ + F +++ +N+ ++ K K K ++ Sbjct: 71 DIYDPQLDVTEYRK-KVGMVF--QKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEES 126 Query: 143 LKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 LK+ + W V + L LSGGQ++RL IAR+L P ILLDEP + +DP+A Sbjct: 127 LKKAAL--WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQR 184 Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 I L+ +L S I+I HN+ + + + D ++ G ++ +G +EI++ Sbjct: 185 IEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 82.1 bits (203), Expect = 1e-16 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 27/247 (10%) Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGL 74 ++ LS L Y +KG+D+ + +I L+GP+G+GK+T+ + T Sbjct: 15 PEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTID 74 Query: 75 ICADSGSIKIDGNDITK--MPMYR-RARLGISYL---PQEASIFRGLTVEENILAVLEVY 128 I +G I G DI + + +Y R +G+ + P SI+ ENI LE Sbjct: 75 IARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIY------ENITFALERA 128 Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181 KDKK E +++ LK+ + W V L LSGGQ++RL IAR++ P +L Sbjct: 129 GVKDKKVLDEIVETSLKQAAL--WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILL 186 Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241 +DEP + +DP++ + + +L I++T HN+ + D + G ++ + Sbjct: 187 MDEPASALDPISTMQLEETMFELKKNYTIIIVT-HNMQQAARASDYTAFFYLGDLIEYDK 245 Query: 242 VQEIIDN 248 + I N Sbjct: 246 TRNIFTN 252 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 82.2 bits (203), Expect = 1e-16 Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 15/198 (7%) Query: 29 CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS--GSIKIDG 86 T++ ++ GV PGEI+ +LGP+G+GK+T + G I ++ G+I + Sbjct: 72 SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN 131 Query: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLL 143 TK + R ++ Q+ ++ LTV E ++ + + EK+ +S++ Sbjct: 132 RKPTKQILKR-----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVI 186 Query: 144 KEFNITKWRHVLAPL-----LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 E +TK + + +SGG+R+R+ IA ++ PS ++LDEP +G+D A + Sbjct: 187 SELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246 Query: 199 VLIRDLASRGIGILITDH 216 + + LA +G I+ + H Sbjct: 247 LTLGSLAQKGKTIVTSMH 264 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 82.0 bits (203), Expect = 1e-16 Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 22/217 (10%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 ++TK Y V + K ++L + GE V +GP+G GK+T M+ GL SG + I + Sbjct: 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149 +P R G+ + Q +++ L+V EN+ L++ K++ +++++ + + + Sbjct: 68 NDVPPAER---GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE---VL 121 Query: 150 KWRHVL---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-------VAISDIHV 199 + H+L LSGGQR+R+ I R+LV+ PS LLDEP + +D + IS +H Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH- 180 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236 + L I +T H+ E +TL D+ ++ AG V Sbjct: 181 --KRLGR--TMIYVT-HDQVEAMTLADKIVVLDAGRV 212 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 81.9 bits (203), Expect = 1e-16 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 22/211 (10%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107 V+ GEI+ L+GPNGAGK+T M GL+ SGSI+ G + AR +YL Q Sbjct: 19 VRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHR-AYLSQ 76 Query: 108 EAS------IFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSG 161 + + +F+ LT+ + E L+ + + + LSG Sbjct: 77 QQTPPFAMPVFQYLTLHQPDKTRTEAVAS-------ALNEVAEALGLDDKLGRSVNQLSG 129 Query: 162 G--QRRR-----LEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214 G QR R L++ + +LLDEP +D + + L+ +L +GI ++++ Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189 Query: 215 DHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 H+++ L DR +++ G +LA G E+ Sbjct: 190 SHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 81.9 bits (202), Expect = 1e-16 Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 23/243 (9%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89 Y +KG+DL EI L+GP+G GK+T+ M LI +G++ + G +I Sbjct: 15 YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI 74 Query: 90 TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145 R ++G+ + Q+ + F ++ EN++ L + KDK E +++ LK+ Sbjct: 75 YAPNEDVVQLRKQVGMVF--QQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ 131 Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 I W V L LSGGQ++R+ IAR L P ILLDEP + +DP++ + I Sbjct: 132 AAI--WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257 ++ +L + IL+T H++H+ + D+ G ++ +++ N + Y+ Sbjct: 190 MLLELRDQYTIILVT-HSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETEDYIT 248 Query: 258 DRF 260 RF Sbjct: 249 GRF 251 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 81.6 bits (202), Expect = 2e-16 Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 31/281 (11%) Query: 1 MKSIRNYLGIEMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPN 60 M S L N + + + L +L Y + + + + + +GP+ Sbjct: 1 MISHGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPS 60 Query: 61 GAGKTTF---FYMMTGLI--CADSGSIKIDGNDI----TKMPMYRRARLGISYL---PQE 108 G GK+T F M L+ C G I++DG +I + RR R+G+ + P Sbjct: 61 GCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR-RVGMVFQRPNPFP 119 Query: 109 ASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSG 161 SI+ EN++ L + +++ E ++ L+ + W V L LSG Sbjct: 120 KSIY------ENVVYGLRLQGINNRRVLDEAVERSLRGAAL--WDEVKDRLHENAFGLSG 171 Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEI 221 GQ++RL IAR++ P +LLDEP + +DP++ I LI +L S+ I+I HN+ + Sbjct: 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK-YTIVIVTHNMQQA 230 Query: 222 LTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLGDRF 260 + D ++ G ++ +G + + ++ Y+ R+ Sbjct: 231 ARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDYITGRY 271 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 81.2 bits (200), Expect = 2e-16 Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 6/219 (2%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI---KIDGNDITKMPMYRR 97 ++ ++L +K GE +G++G NG+GK+T + GL+ G + ID D +K+ R+ Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 +GI + E F G TVEE++ E + +++D L E + K+RH Sbjct: 78 L-VGIVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135 Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217 LSGGQ + + +A L P ++ DE + +DP + + I+ L +G I+ HN Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195 Query: 218 VHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYL 256 + E L DR ++ G ++ G + ++ + ++ L L Sbjct: 196 LEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGL 233 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 81.1 bits (201), Expect = 2e-16 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 21/223 (9%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-CAD-SGSI 82 LL ++TK + V + V L V+ GEIV L G NGAGK+T +++G+ G I Sbjct: 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64 Query: 83 KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK---DKKKRHEKL 139 +G ++ + R GI+ + QE ++ + L+V ENI E+ D + + Sbjct: 65 IFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA 124 Query: 140 DSLLKEFNI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 LL + + T + L GQ++ +EIA++L ++LDEP A + Sbjct: 125 QKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTA---SLTE 176 Query: 195 SDIHVL---IRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234 S+ VL IRDL + GI + H ++E+ + D +I G Sbjct: 177 SETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219 Score = 78.4 bits (194), Expect = 2e-15 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 22/225 (9%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA----DSGSIKIDGNDITKMPMY 95 V V ++ GEI+G+ G GAG+T ++ L A G I IDG + Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTE---LVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 Query: 96 RRARLGISYLPQEAS---IFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFN 147 + GI+ +P++ I + V +NI LA L+ + D + + ++ Sbjct: 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393 Query: 148 ITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + K + LSGG +++ +A+ L+ P ++LDEP G+D A +I+ LI L Sbjct: 394 V-KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLA----HGTVQEII 246 +G+ I++ + E+L L DR ++H G + H QE + Sbjct: 453 QQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQEQV 497 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 80.4 bits (198), Expect = 4e-16 Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 14/243 (5%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVD---LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77 SKD +L S T + + K ++ L K ++ ++G G+GK+T + GLI + Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63 Query: 78 DSGSI-----KIDGNDITKMPMYRRAR--LGISYLPQEASIFRGLTVEENILAVLEVYEK 130 ++G I N + K+ +R R +G+ + E +F+ T+E++I + Sbjct: 64 ETGQTIVGDYAIPAN-LKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGE 121 Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 +K++ ++K+ LLK + + +P LSGGQ+RR+ +A + + ++LDEP G+ Sbjct: 122 NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181 Query: 190 DPVAISD-IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 DP D I++ R I++ HN+ ++L + D ++H G V++ G+ EI N Sbjct: 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241 Query: 249 QDV 251 Q++ Sbjct: 242 QEL 244 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 80.6 bits (199), Expect = 4e-16 Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 23/252 (9%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSG 80 + A L+ Y + + L + ++ L+GP+G GK+TF M LI G Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66 Query: 81 SIKIDGNDITKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRH 136 I +DG +I + R R+G+ + Q+ + F ++ EN+ L V KDK Sbjct: 67 EILLDGENIYDPHVDVVELRRRVGMVF--QKPNPFPK-SIFENVAYGLRVNGVKDKAYLA 123 Query: 137 EKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 E+++ L+ + W V L LSGGQ++RL IAR+L P +L+DEP + +D Sbjct: 124 ERVERSLRHAAL--WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181 Query: 191 PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 P+A I LI +L +R I+I HN+ + + D + G ++ G ++I Sbjct: 182 PIATQKIEELIHELKAR-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240 Query: 251 VRRL--YLGDRF 260 ++ Y+ RF Sbjct: 241 EKQTEDYITGRF 252 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 80.5 bits (198), Expect = 4e-16 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 27/223 (12%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-----RA 98 +DL VK G L+G G+GK+T + GL+ G + + ++ + R Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84 Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEV--------YEKDKKKRHEKLD--SLLKEFNI 148 ++G+ + E+ +F EE +L + EK +K EKL+ L EF Sbjct: 85 KVGVVFQFPESQLF-----EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF-- 137 Query: 149 TKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207 W +P LSGGQ RR+ IA L P ++LDEP AG+DP A ++ L + Sbjct: 138 --WEK--SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193 Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 G +++ H + ++ D Y++ G +++ GT ++ D Sbjct: 194 GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 80.4 bits (198), Expect = 4e-16 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 33/233 (14%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICAD--SGSIKIDGNDI 89 Y +K +++ V ++ L+GP+G GK+TF F M L + G I + +++ Sbjct: 26 YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 Query: 90 TKM-----PMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKR---HEK 138 + P+ R R+ + + P SIF EN+ L + + K+R E+ Sbjct: 86 NILSPEVDPIEVRMRISMVFQKPNPFPKSIF------ENVAYGLRI--RGVKRRSILEER 137 Query: 139 LDSLLKEFNITKWRHV------LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 +++ L+ N W V LA LSGGQ++RL IAR+L + P +L DEP + +DP+ Sbjct: 138 VENALR--NAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195 Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 A + I LI DL ++ + ILI HN+ + + D ++ G ++ G I Sbjct: 196 ATASIEELISDLKNK-VTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 80.4 bits (198), Expect = 5e-16 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 23/267 (8%) Query: 11 EMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM 70 E E +K+ +L L+ Y V + + ++ + L+GP+G GK+TF Sbjct: 7 EKIEIAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRS 66 Query: 71 ---MTGLI--CADSGSIKIDGNDITKMPM-YRRARLGISYLPQEASIFRGLTVEENILAV 124 M LI G I +G +I + R I + Q+ + F ++ NI Sbjct: 67 INRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHA 125 Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITK---WR------HVLAPLLSGGQRRRLEIARSLVS 175 L+ Y +++K LD +++E ++TK W H A LSGGQ++RL IAR+L Sbjct: 126 LK-YAGERRK--SVLDEIVEE-SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGG 235 P+ +LLDEP + +DP++ + I LI +L I+I HN+ + L + DR G Sbjct: 182 KPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240 Query: 236 VLAHGTVQEIIDNQDVRRL--YLGDRF 260 ++ + ++I + ++ Y+ RF Sbjct: 241 LVEYDQTEQIFTSPKQQKTEDYINGRF 267 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 80.3 bits (198), Expect = 5e-16 Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 13/237 (5%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 LL L+K Y + V + PGE++G++G +G+GK+T + G + D G+ Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62 Query: 85 DGND-----ITKMPMYRRARL-----GISYLPQEASIFRGLTVEENILA-VLEVYEKDKK 133 + ++ R RL G + + ++ NI ++ + + Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122 Query: 134 KRHEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 L+E I R P SGG ++RL+IAR+LV+ P + +DEP G+D Sbjct: 123 NIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182 Query: 193 AISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + + L+R L G+ ++I H++ L R ++ G V+ G +++D+ Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 80.1 bits (198), Expect = 5e-16 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 6/166 (3%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 +L L Y ++ ++L ++ GE++ +LGP+G GKTT ++ G + GSI + Sbjct: 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144 DG + P R G+ + Q + V++N+ L++ +K +R E +LK Sbjct: 61 DGKPVEG-PGAER---GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114 Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 + + LSGGQR+R+ IAR+L + P +LLDEPF +D Sbjct: 115 KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 79.6 bits (197), Expect = 8e-16 Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 43/223 (19%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 +++ L ++PG+ V L+G +G+GK+T ++ GL SG I DG ++P R Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP---REV 550 Query: 100 L--GISYLPQEASIFRGLTVEENIL--------AVLEVYEKDK------KKRHEKLDSLL 143 L ++ + Q+ +F G TV +N+ A L KD R D+ L Sbjct: 551 LANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL 609 Query: 144 KE--FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 E N LSGGQR+RLEIAR+LV PS ++LDE + +DP I Sbjct: 610 AEGGAN-----------LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII---D 655 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244 +L RG +I H + T+ D II VL G V + Sbjct: 656 DNLRRRGCTCIIV---AHRLSTIRDCDEII----VLERGKVVQ 691 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 79.4 bits (196), Expect = 8e-16 Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 20/232 (8%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLICAD--SGSIKID 85 L Y S + V+ V+L ++P + +GP+G GK+T M +I G + +D Sbjct: 10 LNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69 Query: 86 GNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDS 141 G D+ P+ R +G+ + Q + F +++ +N++A L++ ++KK E ++ Sbjct: 70 GEDLYGPGVDPVAVRRTIGMVF--QRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEK 127 Query: 142 LLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195 L+ N+ W V L LSGGQ++RL IAR++ P +L+DEP + +DP++ Sbjct: 128 SLRGANL--WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185 Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 I LI +L I+I HN+ + + D+ + G + EI D Sbjct: 186 AIEDLINELKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 78.8 bits (194), Expect = 1e-15 Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 31/248 (12%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89 Y VK V+ + + ++GP+G GK+TF M LI C +G++ DG DI Sbjct: 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI 108 Query: 90 ----TKMPMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 T + R+ ++G+ + P SIF + + + DKK+ E ++ Sbjct: 109 YGKFTDEVLLRK-KIGMVFQKPNPFPKSIFDNIAYGPRLHGI-----NDKKQLEEIVEKS 162 Query: 143 LKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 L++ + W V L LSGGQ++RL +AR+L P +LLDEP + +DP A + Sbjct: 163 LRKAAL--WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAK 220 Query: 197 IHVLIRDLASRG-IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL- 254 I LI++L RG I+I HN+ + + D + G ++ H ++ N R Sbjct: 221 IEDLIQEL--RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278 Query: 255 -YLGDRFA 261 Y+ RF+ Sbjct: 279 DYITGRFS 286 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 78.3 bits (193), Expect = 2e-15 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 16/226 (7%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89 Y +K ++L + ++ L+GP+G GK+T M LI +G + +DG DI Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNI 148 R+ + + Q+ + F +++ EN+ L KDKK E ++ L+ + Sbjct: 73 YGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL 131 Query: 149 TKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 W V L LSGGQ++RL IAR++ P IL+DEP + +DP+A I L+ Sbjct: 132 --WDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189 Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 +L + I+I H++ + + DR G ++ H Q I N Sbjct: 190 EL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 78.2 bits (192), Expect = 2e-15 Identities = 56/215 (26%), Positives = 111/215 (51%), Gaps = 4/215 (1%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92 +K + V + GV + GE V ++G NG+GK+T ++ GL G +KIDG +T Sbjct: 15 EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74 Query: 93 PMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW 151 ++ R ++G+ + + F G TVE+++ +E +++ +++D L N+ + Sbjct: 75 NVWNLRRKIGMVFQNPDNQ-FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF 133 Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIG 210 + LSGGQ++R+ +A + P I+LDE + +DP +I +I ++ + + Sbjct: 134 KTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT 193 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 +L H++ E + DR ++ AG ++ E+ Sbjct: 194 VLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 78.3 bits (193), Expect = 2e-15 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 21/242 (8%) Query: 22 KDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--C 76 + +L L+ YN + V L P EI L+GP+G+GK+T M L Sbjct: 2 TEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEV 61 Query: 77 ADSGSIKIDGNDI---TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDK 132 +GSI +G++I + R +G+ + Q+ + F +++ EN++ L + KDK Sbjct: 62 TITGSIVYNGHNIYSPRTDTVDLRKEIGMVF--QQPNPFP-MSIYENVVYGLRLKGIKDK 118 Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPF 186 + E ++ LK +I W V L LSGGQ++R+ IAR L + P ILLDEP Sbjct: 119 QVLDEAVEKSLKGASI--WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176 Query: 187 AGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 + +DP++ I + L +L+T ++ + + DR G ++ + +++ Sbjct: 177 SALDPISAGKIEETLLGLKDDYTMLLVT-RSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 Query: 247 DN 248 N Sbjct: 236 MN 237 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 77.8 bits (192), Expect = 2e-15 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 20/228 (8%) Query: 24 SLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD- 78 +LL + + Y S V V+KG+ L + GE+V ++G +G+GK+T +M L C D Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKST---LMNILGCLDK 59 Query: 79 --SGSIKIDGNDITKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-K 130 SG+ ++ G D+ + RR G ++ Q + LT +N+ V VY Sbjct: 60 PTSGTYRVAGQDVATLDADALAQLRREHFG--FIFQRYHLLSHLTAAQNV-EVPAVYAGL 116 Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 ++K+R + LL+ + LSGGQ++R+ IAR+L++ IL DEP +D Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176 Query: 191 PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238 + ++ ++ L RG ++I H+ + +R I G ++ Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VAAQAERVIEIRDGEIVR 223 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 77.6 bits (191), Expect = 3e-15 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 37/250 (14%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM------------MTGLICADSGSI 82 Y + +K ++L + E+ ++GP+G GK+TF +TG + + +I Sbjct: 22 YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81 Query: 83 KIDGNDITKMPMYRRARLGISY-----LPQEASIFRGLTVEENILAVLEVY-EKDKKKRH 136 D+ ++ R +G+ + PQ SIF +N+ ++ K+KKK Sbjct: 82 LKGKVDLVEL----RKNIGMVFQKGNPFPQ--SIF------DNVAYGPRIHGTKNKKKLQ 129 Query: 137 EKLDSLLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 E ++ LK+ ++ K R H A LSGGQ++RL IAR+L + P +L+DEP + +DPV Sbjct: 130 EIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPV 189 Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252 + I LI L + I+I HN+ + + D+ + G ++ ++ N D + Sbjct: 190 STRKIEELILKLKEK-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQ 248 Query: 253 RL--YLGDRF 260 R Y+ +F Sbjct: 249 RTLDYITGKF 258 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 77.4 bits (190), Expect = 3e-15 Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 20/237 (8%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-D 88 +L+ Y++ +++GV + + ++ ++GP+G GK+TF + + ++++G + Sbjct: 12 NLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-NELESEVRVEGRVE 70 Query: 89 ITKMPMYRRARLGISYLPQEASIFRG------LTVEENI-LAVLEVYEKDKKKRHEKLDS 141 +Y R R+ ++ L ++ S+ ++V +N+ V V + K + + ++S Sbjct: 71 FFNQNIYER-RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVES 129 Query: 142 LLKEFN----ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197 LK+ + I H A LSGGQ++RL IAR+L P +L+DEP G+DP+A + Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189 Query: 198 HVLIRDLASRG-IGILITDHNVHEILTLIDRAYIIHA-----GGVLAHGTVQEIIDN 248 LI+ L R + ++I HN+H++ L D G ++ G ++I ++ Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 77.5 bits (191), Expect = 4e-15 Identities = 62/220 (28%), Positives = 118/220 (53%), Gaps = 7/220 (3%) Query: 31 LTKKYNS---VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN 87 LT KY Y + V +VK GE + ++G NG+GK+T ++ GL+ A+SG I IDG+ Sbjct: 10 LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69 Query: 88 DITKMPMY-RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146 +T+ ++ R ++G+ + + F G TVE+++ LE ++ E+++ L+ Sbjct: 70 LLTEENVWDIRHKIGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPHEEMKERVNEALELV 128 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + ++ LSGGQ++R+ IA ++ P I+LDE + +DP ++ I+ + Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188 Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + ++ H++ E+ L DR ++ G V + T +E+ Sbjct: 189 DYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPREL 227 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 77.0 bits (190), Expect = 4e-15 Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 11/183 (6%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN----DITKMPMY 95 V+K V L V GE V L GP+GAGK+T + DSG I + D+ + Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82 Query: 96 RRA---RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152 R I Y+ Q + ++ E + L ++ + LL NI + Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142 Query: 153 HVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRG--- 208 L P SGG+++R+ IAR ++ +LLDEP A +D + LI + +RG Sbjct: 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202 Query: 209 IGI 211 IGI Sbjct: 203 IGI 205 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 76.2 bits (188), Expect = 7e-15 Identities = 56/220 (25%), Positives = 108/220 (49%), Gaps = 5/220 (2%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 LT Y + ++ + L + G+I L+GPNG GK+T L+ SG++ + I+ Sbjct: 8 LTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKLDSLLKEF 146 + + AR ++ LPQ G+TV E + L ++ + + + +++ +++ Sbjct: 68 MLSSRQLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT 126 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 I LSGGQR+R +A L +LLDEP +D ++ L+R+L + Sbjct: 127 RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186 Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 +G ++ H++++ D ++ G V+A GT +E++ Sbjct: 187 QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 76.4 bits (188), Expect = 7e-15 Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 20/226 (8%) Query: 51 GEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMYRRARLGISYL 105 G V L+G G+GK+T L+ SG+I I G IT K R ++ + + Sbjct: 33 GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ 92 Query: 106 PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL----LKEFNITKWRHVLAPL-LS 160 EA +F +++ + + + + L L L E I+K +P LS Sbjct: 93 FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147 Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220 GGQ RR+ IA + P + LDEP AG+DP ++ L +D G +++ HN+ + Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQD-VRRLYLGD----RFA 261 + D ++ G ++ H + +EI +++ +++ YL + RFA Sbjct: 208 VAEYADDVLVLEHGKLIKHASPKEIFSDKEWLKKHYLDEPATSRFA 253 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 76.4 bits (188), Expect = 8e-15 Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 42/267 (15%) Query: 17 ENRASKDSLLSACSLTKKYNS-----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71 N S D +L +L ++ + + + + +I ++G +G+GK+T Sbjct: 13 PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHF 72 Query: 72 TGLICADSGSIKI---------DGNDITKMPMYR--------RARLGISYLPQEASIFRG 114 GLI + G+I++ + +++ P + R R+ + + E +F+ Sbjct: 73 NGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132 Query: 115 LTVEENIL---AVLEVYEKDKKKRHEK------LDSLLKEFNITKWRHVLAPL-LSGGQR 164 T+E++I+ L V + + KK + LD E + P LSGGQ+ Sbjct: 133 -TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS---------PFGLSGGQK 182 Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTL 224 RR+ IA L P ++ DEP AG+DP ++ LI D + + + H + +L + Sbjct: 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV 242 Query: 225 IDRAYIIHAGGVLAHGTVQEIIDNQDV 251 D ++ G +L GT EI +Q + Sbjct: 243 ADEVIVMDKGKILKTGTPYEIFTDQHI 269 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 75.5 bits (186), Expect = 1e-14 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 7/209 (3%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 ++K + V + V+L V+P I L+G NGAGK+T + G+ DSGSI G +I Sbjct: 4 ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63 Query: 91 KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-----DKKKRHEKLDSLLKE 145 GIS + QE ++ +V +N+ L Y D+ K + ++ E Sbjct: 64 FKSSKEALENGISMVHQELNLVLQRSVMDNMW--LGRYPTKGMFVDQDKMYRDTKAIFDE 121 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 +I LS Q + +EIA++ +++DEP + + ++ + +IR L Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG 234 RG GI+ H + EI L D I+ G Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDG 210 Score = 60.9 bits (148), Expect = 3e-10 Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 22/224 (9%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100 ++ V + GEI+G+ G GA +T + G+ +G+I + G I Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 Query: 101 GISYLPQE---ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW------ 151 G + + +E I+ L + N L + K L + + T+W Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSL----ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR 379 Query: 152 -----RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 LSGG ++++ I R L++ P ++LDEP G+D A +I+ LI +LA Sbjct: 380 VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439 Query: 207 RGIGILITDHNVHEILTLIDRAYIIH----AGGVLAHGTVQEII 246 + GI+I + E+L + DR ++ AG V T Q I Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEI 483 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 75.4 bits (185), Expect = 1e-14 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 29/251 (11%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLIC--ADSGSIKI 84 +L ++ +++K V+L + + L+GP+G GK+TF M LI G I + Sbjct: 8 NLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL 67 Query: 85 DGNDITKMPM---YRRARLGISYL---PQEASIFRGLTVEENILAVLEVY-EKDKKKRHE 137 DG DI + R ++G+ + P SIF +N+ L ++ E D+ E Sbjct: 68 DGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIF------DNVAYGLRIHGEDDEDFIEE 121 Query: 138 KLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 +++ LK + W V L LSGGQ++RL IAR++ P IL+DEP + +DP Sbjct: 122 RVEESLKAAAL--WDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP 179 Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 ++ + I LI L I+I HN+ + + G ++ G +I N Sbjct: 180 ISTTKIEDLIHKLKED-YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKD 238 Query: 252 RRL--YLGDRF 260 +R Y+ RF Sbjct: 239 KRTEDYITGRF 249 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 75.0 bits (185), Expect = 2e-14 Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 19/241 (7%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICADS--GSIKIDGNDI 89 Y + +K ++L + ++ +GP+G GK+T F M L G I +DG +I Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 Query: 90 --TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKE 145 K + RA++G+ + Q+ + F +++ +NI + ++EK + + E+++ L + Sbjct: 83 LTPKQDIALLRAKVGMVF--QKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTK 139 Query: 146 ---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 +N K + H LSGGQ++RL IAR + P +LLDEP + +DP++ I LI Sbjct: 140 AALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI 199 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLGDR 259 +L + ++I HN+ + D ++ G ++ G I ++ Y+ R Sbjct: 200 TEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYITGR 258 Query: 260 F 260 F Sbjct: 259 F 259 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 75.0 bits (184), Expect = 2e-14 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 16/218 (7%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRR 97 V+ G+ +V P E VG++G GAGK++ + ++ + G I ID D+ K + RR Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE------FNITKW 151 +S +PQ +F G TV NI E + D + E+ + +K+ F + Sbjct: 1311 V---LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALER--AHIKDVIDRNPFGLDAE 1364 Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211 S GQR+ L +AR+L+ ++LDE A VD S I IR+ + + Sbjct: 1365 VSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE-EFKSCTM 1423 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 L+ H ++ I+ D+ ++ +G VL + + QE++ Sbjct: 1424 LVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 Score = 56.1 bits (135), Expect = 8e-09 Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 25/212 (11%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTG-LICADSGSIKIDGNDITKMPMYRRARLGI 102 ++L + G +V ++G G GKT+ M G L A++ S+ I G+ + Sbjct: 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGS--------------V 681 Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL-----AP 157 +Y+PQ + IF TV ENIL + +E ++ R + +L + ++ R + Sbjct: 682 AYVPQVSWIFNA-TVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739 Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASRGIGILITDH 216 +SGGQ++R+ +AR++ S + D+P + +D VA ++D +L+T Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT-- 797 Query: 217 NVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 N L L+DR ++ G + GT E+ + Sbjct: 798 NQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 74.7 bits (183), Expect = 2e-14 Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 26/248 (10%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-DITKMP 93 YN+ ++G+ + + ++ ++GP+G GK+TF + I G +K++G D Sbjct: 17 YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQN 75 Query: 94 MY------RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK-KRHEKLDSLLKEF 146 +Y R R I + Q + F +++ EN+ + + K + E ++S LK Sbjct: 76 IYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGA 134 Query: 147 NITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200 + W+ V L LSGGQ++RL IAR+L P +L+DEP + +DP+A + L Sbjct: 135 AL--WQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL 192 Query: 201 IRDLASRGIGILITDHNVHEILTLIDRAYIIHA-----GGVLAHGTVQEIIDNQ-DVR-R 253 I L S + I I HN+ + + D G ++ G +I N D R R Sbjct: 193 IHSLRSE-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRTR 251 Query: 254 LYLGDRFA 261 Y+ RF Sbjct: 252 DYVSGRFG 259 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 74.4 bits (183), Expect = 3e-14 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 19/220 (8%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL----ICADSGSIKIDGNDI----- 89 VVK + ++PGE +GL+G +G+GK+T TGL + G I DG + Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKST-----TGLALLRLINSQGEIWFDGQPLHNLNR 354 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD--KKKRHEKLDSLLKEFN 147 ++ R R+ + + +S+ L V + I L V++ +R +++ ++++E Sbjct: 355 RQLLPVRH-RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVG 413 Query: 148 I-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206 + + RH SGGQR+R+ IAR+L+ PS I+LDEP + +D + I L++ L Sbjct: 414 LDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473 Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + + L H++H + L + ++ G V+ G + + Sbjct: 474 KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513 Score = 49.7 bits (119), Expect = 7e-07 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 27/227 (11%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGNDITKM-- 92 VV V L ++ GE + L+G +G+GK+ + L+ + SG I+ G + Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 Query: 93 PMYRRARLGISYLPQEASIFRGLTVEENILAVLE--VYE--------KDKKKRHEKLDSL 142 R R + A IF+ V N L LE +YE + + R E L + Sbjct: 84 QTLRGVRGN-----KIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEIL-NC 137 Query: 143 LKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 L I + L LSGG+R+R+ IA +L++ P ++ DEP +D + I Sbjct: 138 LDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ 197 Query: 200 LIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 L+R+L +G+L HN+ + L DR ++ G + + Sbjct: 198 LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 74.4 bits (182), Expect = 3e-14 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 16/235 (6%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD------- 78 ++A +LT + V+ V + + L+GP G+GKTTF + + D Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKVSGYRY 79 Query: 79 SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138 SG + + G I R + L Q + F +++ +N+LA + ++ +K Sbjct: 80 SGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRG 138 Query: 139 L-DSLLKE---FNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 + + L E ++ K R +P LSGGQ++ L +AR+L P +LLDEP + +DP Sbjct: 139 VAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198 Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 I IR LA R + ++I HN+ + + DRA + G ++ G +++ + Sbjct: 199 TEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 74.3 bits (182), Expect = 3e-14 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 16/226 (7%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89 Y +K V + + + L+GP+G GK+TF M LI C G + I+G DI Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81 Query: 90 TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE- 145 + + R +G+ + Q+ + F +++ +N+ ++ +KK +++ L+ Sbjct: 82 YEPDVDVVELRKNVGMVF--QKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSA 138 Query: 146 --FNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 ++ T R L LSGGQ++RL IAR+L P IL DEP + +DP++ + I LI Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM 198 Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 +L + I+I HN+ + + D G ++ G ++I N Sbjct: 199 NL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 73.8 bits (182), Expect = 5e-14 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 30/172 (17%) Query: 23 DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82 D ++ A +L+K + ++ + + PG IVG++GPNGAGK+T F M+TG DSG+I Sbjct: 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379 Query: 83 KIDGNDITKMPMYRRARLGISYLPQE-ASIFRGLTVEENI---LAVLEVYEKDKKKRHEK 138 KI + K ++Y+ Q ++ TV E I L ++++ +++ R Sbjct: 380 KI--GETVK----------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR--- 424 Query: 139 LDSLLKEFNIT-----KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEP 185 + + FN K LSGG+R R+ +A++L S + +LLDEP Sbjct: 425 --AYVGRFNFKGSDQQK----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 Score = 59.9 bits (146), Expect = 6e-10 Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 68/201 (33%) Query: 31 LTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 ++K ++K + L PG +G+LG NGAGK+T +M G+ D + +G + Sbjct: 10 VSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DK---EFNG-EA 62 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKL--------- 139 P + + YLPQE + TV EN+ V E+ KD R ++ Sbjct: 63 RPAPGIK-----VGYLPQEPQLDPTKTVRENVEEGVAEI--KDALDRFNEISAKFAEPDA 115 Query: 140 --DSLLKE---------------------------------FNITKWRHVLAPLLSGGQR 164 D+LL E ++TK LSGG+R Sbjct: 116 DMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK--------LSGGER 167 Query: 165 RRLEIARSLVSFPSYILLDEP 185 RR+ + R L+S P +LLDEP Sbjct: 168 RRVALCRLLLSKPDMLLLDEP 188 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 73.3 bits (180), Expect = 5e-14 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 37/228 (16%) Query: 21 SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI-- 75 SK+ ++S ++T Y + VK V + G++ L+GP+G GK+T M LI Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68 Query: 76 CADSGSIKIDGNDI---TKMPMYRRARLGISYL---PQEASIFRGLTVEENIL--AVLEV 127 C+ G + DG D+ P+ R R+G+ + P SI+ ENI A + Sbjct: 69 CSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIY------ENIAFGARING 122 Query: 128 YEKDKKKRHEKLDSLLKEFNITK---WRHVLAPL------LSGGQRRRLEIARSLVSFPS 178 Y D +D L+ E ++ K W L LSGGQ++RL IAR++ P Sbjct: 123 YTGD-------MDELV-ERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPE 174 Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLID 226 IL+DEP + +DP++ I + +L + I+I HN+ + + + D Sbjct: 175 VILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSD 221 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 73.2 bits (180), Expect = 6e-14 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 14/225 (6%) Query: 34 KYNS--VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI-----KIDG 86 +Y S + +K V + G+ ++G NG+GK+T +M G+ SG I I Sbjct: 16 QYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD 75 Query: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146 ++ K+ R +GI + + F G V+ ++ LE + + H ++ LK+ Sbjct: 76 DNFEKL----RKHIGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQV 130 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-A 205 ++ + LSGGQ++R+ IA L PS I+LDE + +DP A ++ L+R + + Sbjct: 131 DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 I I+ H++ E + D +++ G V GT EI D+ + Sbjct: 191 EHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAE 234 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 73.2 bits (180), Expect = 6e-14 Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 27/215 (12%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-- 87 +++K+Y V+ +DL++ G+ V ++G +G GK+T ++ GL +G + + G Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAP 75 Query: 88 -----DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 + T++ M++ ARL LP + V +N+ L + + + + L ++ Sbjct: 76 LAEAREDTRL-MFQDARL----LPWK-------KVIDNV--GLGLKGQWRDAALQALAAV 121 Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202 +W LSGGQ++R+ +AR+L+ P +LLDEP +D + ++ LI Sbjct: 122 GLADRANEW----PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177 Query: 203 DL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236 L G +L+ H+V E + + DR +I G + Sbjct: 178 SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 72.5 bits (178), Expect = 1e-13 Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 17/219 (7%) Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-----R 97 V+L ++ G +G G+GK+T ++ GL GS+++D IT + R Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE----FNITKWRH 153 ++G+ + E+ +F EE +L + ++ E+ ++L +E I++ Sbjct: 85 KKVGLVFQFPESQLF-----EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139 Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 P LSGGQ RR+ IA L P ++LDEP AG+DP ++ L + L G+ I+ Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 + H + ++ D Y++ G ++ G ++I QDV Sbjct: 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF--QDV 236 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 72.5 bits (178), Expect = 1e-13 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 28/225 (12%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-MYRRA 98 V+ G+ + P E VG++G GAGK++ + ++ + G I IDG DI+K M R Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 Query: 99 RLGISYLPQEASIFRGLTV--------EENILAVLEVYE----KDKKKRHEK-LDSLLKE 145 LGI +PQ +F G TV E N + E E KD +R+ LD+ + E Sbjct: 1314 VLGI--IPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 S GQR+ L +AR+L+ ++LDE A VD + I IR+ Sbjct: 1371 AGEN---------FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE-E 1420 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 + +LI H ++ I+ DR ++ AG V+ T + ++ N+ Sbjct: 1421 FKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEG 1464 Score = 61.7 bits (150), Expect = 2e-10 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 43/221 (19%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS-GSIKIDGNDITKMPMYRRARLGI 102 ++L V G +V ++G G GKT+ M G + S S+ I G + Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT--------------V 681 Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL---- 158 +Y+PQ + IF TV +NIL ++ ++ +R ++T +H L L Sbjct: 682 AYVPQVSWIFNA-TVRDNILFGSP-FDPERYER---------AIDVTALQHDLDLLPGGD 730 Query: 159 ----------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASR 207 +SGGQ++R+ +AR++ S + D+P + +D V I+D Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG 790 Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 +L+T N L+ +DR ++H G + GT +E+ +N Sbjct: 791 KTRVLVT--NQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 72.5 bits (178), Expect = 1e-13 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 7/224 (3%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS---IKIDG 86 S T + + + + G L+G NG+GK+T ++ GL+ D I +DG Sbjct: 12 SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG 71 Query: 87 NDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145 +T ++ R ++GI + + F G TV +++ LE + + + + +L + Sbjct: 72 ITLTAKTVWDIREKVGIVFQNPDNQ-FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLAD 130 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + + LSGGQ++R+ IA L P I+LDE + +DP I LIR L Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190 Query: 206 -SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 + ++ H++ E + D+ ++ G +LA G+ EI Sbjct: 191 KKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 72.4 bits (177), Expect = 1e-13 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP- 93 Y + +++ + I L+GP+G GK+TF + + G IKI+GN I + Sbjct: 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKN 75 Query: 94 --------MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSLLK 144 + R ++G+ + Q + F +++ +NI +++ KDKKK E ++ LK Sbjct: 76 IYSNNFDILELRRKIGMVF--QTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLK 132 Query: 145 EFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198 + + W V L LSGGQ++RL IAR+L P+ IL+DEP + +DP++ I Sbjct: 133 KSAL--WNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190 Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 LI +L I+I HN+ + + DR G + + E+ N Sbjct: 191 ELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 72.3 bits (177), Expect = 1e-13 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 6/231 (2%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 LT Y V + + + + G ++GPNG GK+T ++ L+ G + +DG I Sbjct: 12 QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71 Query: 90 TKMPMYRRARLGISYLPQEASIFRGLTVEENI----LAVLEVYEKDKKKRHEKLDSLLKE 145 AR I L Q A+ +TV+E + ++ + +K+ E + ++ Sbjct: 72 QHYASKEVARR-IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA 130 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL- 204 IT LSGGQR+R IA L + +LLDEP +D D+ L+ +L Sbjct: 131 TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190 Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 +G + H++++ + G ++A G +EI+ + + R+Y Sbjct: 191 REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 72.0 bits (177), Expect = 1e-13 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 18/219 (8%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMYRRA 98 V++ + G V ++G G+GK+T + GL+ SG++ I IT K R Sbjct: 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85 Query: 99 RLGISYLPQEASIFRGLTVEENIL---AVLEVYEKDKKKRHEKLDSL--LKEFNITKWRH 153 ++GI + E +F TVE++I V E+D K++ ++ L L E + + Sbjct: 86 KVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR--- 141 Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGI 211 +P LSGGQ RR+ IA L P ++LDEP AG+DP ++ + L +G+ Sbjct: 142 --SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTT 199 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 ++ H++ + D+ ++H G V GT +EI + D Sbjct: 200 VLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 71.8 bits (177), Expect = 2e-13 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 41/223 (18%) Query: 17 ENRASKDSLLSACSLTKKYN--SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74 + + +++L+ LTKK S+ V G + GE++G++GPNG GKTTF ++ G+ Sbjct: 332 RDESERETLVEYPDLTKKLGDFSLEVEGG---EIYEGEVIGIVGPNGIGKTTFAKLLAGV 388 Query: 75 ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134 + D G + + L ISY PQ TVE+ + ++ + Sbjct: 389 LKPDEGEVDPE--------------LKISYKPQYIKPDYDGTVEDLLRSITDDLG-SSYY 433 Query: 135 RHE-----KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 + E +L+ LL + N+ LSGG+ +R+ IA L LLDEP A + Sbjct: 434 KSEIIKPLQLERLL-DKNVKD--------LSGGELQRVAIAACLSRDADLYLLDEPSAHL 484 Query: 190 D---PVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRA 228 D +A++ IR +A R L+ DH+++ I + DR Sbjct: 485 DVEQRLAVAKA---IRRIAEEREATALVVDHDIYMIDYISDRL 524 Score = 40.6 bits (96), Expect = 4e-04 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 59/212 (27%) Query: 39 YVVKGVDLY----VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP- 93 Y V G LY K G++ G+LGPNG GKTT + L SG + + D + P Sbjct: 83 YGVNGFKLYGLPIPKEGKVTGILGPNGIGKTT---AVKIL----SGELIPNLGDYEEEPS 135 Query: 94 ------MYR----------------RARLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131 +R + Y+ +F+G V E +L+ + D Sbjct: 136 WDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKG-KVRE----LLK--KVD 188 Query: 132 KKKRHEKLDSLLKEFNITKW--RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189 ++ KLD +++ + R + LSGG+ +R+ IA +L+ + DEP + + Sbjct: 189 ERG---KLDEVVERLGLENILDRDISE--LSGGELQRVAIAAALLRDADFYFFDEPTSYL 243 Query: 190 D-----PVAISDIHVLIRDLASRGIGILITDH 216 D VA LIR+LA G +L+ +H Sbjct: 244 DIRQRLNVAR-----LIRELA-EGKYVLVVEH 269 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 71.7 bits (176), Expect = 2e-13 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 5/155 (3%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++ GV+L VK GE + L+G +G+GK+T ++ GL SG + + G + +M RA+ Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 Query: 100 L---GISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155 L + ++ Q + L EN+ L L E ++ R+ LL++ + K L Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKA-LLEQLGLGKRLDHL 143 Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 LSGG+++R+ +AR+ P + DEP +D Sbjct: 144 PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 71.9 bits (176), Expect = 2e-13 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 43/234 (18%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V+K + ++ G+++ + G G+GK++ M+ G + G IK G Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ 488 Query: 100 LGISYLPQEASIFRGLTVEENIL-----------AVLEV--YEKDKKKRHEKLDSLLKEF 146 IS+ PQ + I G T+++NI+ +V++ E+D EK ++L E Sbjct: 489 --ISFSPQTSWIMPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545 Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI--HVLIRDL 204 IT LSGGQR R+ +AR++ LLD PF +D V +I L + + Sbjct: 546 GIT---------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM 596 Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ-DVRRLYLG 257 +++ IL+T H L D+ ++H G +GT E+ + D L LG Sbjct: 597 SNK-TRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLG 647 Score = 64.9 bits (158), Expect = 2e-11 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 26/206 (12%) Query: 31 LTKKYNSV--YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG-- 86 LT KY V++ + V+ G+ VGLLG G+GK+T + L+ + G I+IDG Sbjct: 1223 LTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVS 1281 Query: 87 -NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK------L 139 N +T + +R+A G+ +PQ+ IF G T +N L+ YE+ + K L Sbjct: 1282 WNSVT-LQTWRKA-FGV--IPQKVFIFSG-TFRKN----LDPYEQWSDEEIWKVAEEVGL 1332 Query: 140 DSLLKEFNITKWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 S++++F K VL +LS G ++ + +ARS++S +LLDEP A +DPV + Sbjct: 1333 KSVIEQFP-DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391 Query: 197 IHVLIRDLASRGIGILITDHNVHEIL 222 I ++ S IL ++H V +L Sbjct: 1392 IRKTLKQSFSNCTVIL-SEHRVEALL 1416 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 71.5 bits (176), Expect = 2e-13 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 21/214 (9%) Query: 26 LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85 LS + K + V + + + G++ L+G NGAGK+T +++G D+GSI ID Sbjct: 5 LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64 Query: 86 GNDITKMPMYRRAR----LGISYLPQEASIFRGLTVEENI-LAVLE-----VYEKDKKKR 135 G ++ + G++ + QE + +TV EN+ L L V + Sbjct: 65 GQEMR----FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE 120 Query: 136 -HEKLDSLLKEFN-ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 E+L+ L + + T ++ LS GQR+ +EIA++L I DEP + + Sbjct: 121 AREQLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDR 227 I + +IR+L + G IL H + EI L D Sbjct: 176 IEQLFRVIRELRAEGRVILYVSHRMEEIFALCDA 209 Score = 67.2 bits (165), Expect = 4e-12 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 29/217 (13%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-KMPMYRRA-RLG 101 + V+ GEIVGL G GAG++ ++ G +G + +DG I + P R A R G Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP--RDAIRAG 329 Query: 102 ISYLPQ---EASIFRGLTVEENI------------LAVLEVYEKDKKKRHEKLDSLLKEF 146 I P+ I +V +NI + +E + R ++ Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRF------IRSL 383 Query: 147 NI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 NI T R L LSGG +++ + R L ILLDEP G+D A +I+ +I +LA Sbjct: 384 NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA 443 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG---GVLAH 239 ++G+ +L ++ E+L + DR ++ G G LA Sbjct: 444 AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 70.8 bits (174), Expect = 3e-13 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 34/223 (15%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98 ++ V L ++PGE V ++GP+G+GK+T ++ G +SGS+ DG D+ + + R Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527 Query: 99 RLGI---SYLPQEASIFR------GLTVEENILAVLEV-YEKDKKKRHEKLDSLLKEFNI 148 +LG+ + SIF LT++E A +D + + +++ E Sbjct: 528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587 Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDLA 205 T LSGGQR+RL IAR+LV P +L DE + +D + V L R Sbjct: 588 T---------LSGGQRQRLLIARALVRKPRILLFDEATSALD--NRTQAIVSESLERLKV 636 Query: 206 SRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEII 246 +R I+I H + T+ DR Y++ AG V+ GT E++ Sbjct: 637 TR---IVIA----HRLSTIRNADRIYVLDAGRVVQQGTYDELM 672 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 70.7 bits (173), Expect = 3e-13 Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 8/183 (4%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-----PMY 95 ++GV +++PGE+ L G +GAGK+T ++ G+ +G I G+DIT++ P Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77 Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155 RR I + Q+ + TV +N+ L + ++ + L + + Sbjct: 78 RRQ---IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF 134 Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215 LSGG+++R+ IAR++V+ P+ +L DEP +D I L + G+ +L+ Sbjct: 135 PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMAT 194 Query: 216 HNV 218 H++ Sbjct: 195 HDI 197 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 70.6 bits (173), Expect = 4e-13 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 10/213 (4%) Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEA 109 G++ GL+G NG+GK+T M+ G I +D + AR ++YLPQ+ Sbjct: 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-KVAYLPQQL 94 Query: 110 SIFRGLTVEENILAVLEVYE------KDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQ 163 G+TV E L + Y + EK++ + + H L LSGG+ Sbjct: 95 PAAEGMTVRE--LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGE 152 Query: 164 RRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEIL 222 R+R IA + +LLDEP + +D D+ L+ L+ RG+ ++ H+++ Sbjct: 153 RQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212 Query: 223 TLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255 D + G ++A GT E++ + + ++Y Sbjct: 213 RYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 70.5 bits (173), Expect = 4e-13 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 27/222 (12%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++ + L +K ++G +G+GK+T ++ G A SG I ++G + + + + Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548 Query: 100 LGISYLPQEASIFRGLTVE------------ENILAVLEVYE--KDKKKRHEKLDSLLKE 145 I+YLPQE IF G +E + I A E+ E D + + L E Sbjct: 549 F-INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607 Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205 + +SGGQ++R+ +AR+L++ ++LDE + +D + I + +L Sbjct: 608 EGSS---------ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658 Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 + I I + H + + D+ ++ G ++ G+ E++D Sbjct: 659 DKTI-IFVA-HRL-SVAKQSDKIIVLDHGKIIEQGSHDELLD 697 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 70.7 bits (173), Expect = 4e-13 Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 +L L Y+ +++ + ++ G ++ L G NGAGKTT ++ GL+ + G I Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 Query: 85 DGNDITK-MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 + I K + Y++ + ++ + I LT+ EN L Y+ + L Sbjct: 61 ERQSIKKDLCTYQKQ---LCFVGHRSGINPYLTLRENCL-----YDIHFSPGAVGITELC 112 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 + F++ LLS GQ+R++ + R +S LLDEP +D +++ I I++ Sbjct: 113 RLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172 Query: 204 LASRGIGILITDH 216 ++G +L+T H Sbjct: 173 HRAKGGAVLLTSH 185 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 70.5 bits (173), Expect = 4e-13 Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 18/238 (7%) Query: 24 SLLSACSLTKKYNSV---------YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74 +LL+ L+ Y V+ V L +K GE V LLG +G GK+T ++ GL Sbjct: 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61 Query: 75 ICADSGSIKIDGNDITKMPMYRRA--RLGISYLPQEA--SIFRGLTVEENILAVLE-VYE 129 G++ G + K+ +R R I + Q++ ++ TV E I L + Sbjct: 62 ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS 121 Query: 130 KDKKKRHEKLDSLLKEFNITKWRHV--LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187 DK +R + +L+ ++ + P LSGGQ +R+ +AR+L P ++LDE + Sbjct: 122 LDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180 Query: 188 GVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244 +D V + + L++ L + G L H++ + R ++ G ++ V + Sbjct: 181 NLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 70.5 bits (173), Expect = 4e-13 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 16/217 (7%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 + + L ++PGE V L+G +G+GK+T ++ DSG I +DG+D+ + R Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL-ASLR 405 Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL-DSLLKEF--NITKWRH--- 153 ++ + Q+ +F T+ NI A + D+ + L + ++F + Sbjct: 406 RQVALVSQDVVLFND-TIANNI-AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463 Query: 154 -VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 LLSGGQR+RL IAR+L+ ++LDE + +D + + + L ++ Sbjct: 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523 Query: 213 ITDHNVHEILTL--IDRAYIIHAGGVLAHGTVQEIID 247 I H + T+ DR ++ G ++ GT E++ Sbjct: 524 IA----HRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 70.5 bits (173), Expect = 5e-13 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 18/221 (8%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP--MYRRA 98 V GV L + GE +G++G +G GK+TF + GL+ A G + G D+ M +R Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAV 96 Query: 99 RLGISYLPQE--ASIFRGLTVEENILAVLEVY--EKDKKKRHEKLDSLLKEFN-----IT 149 R I + Q+ AS+ +T+ E I L Y + +++ +++ +++ + I Sbjct: 97 RSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN 156 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRDL-ASR 207 ++ H SGGQ +R+ IAR+L+ P I+ DEP + +D V+I V L++ L Sbjct: 157 RYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALD-VSIQAQVVNLLQQLQREM 211 Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 G+ ++ H++ + + DR +++ G + GT E+ N Sbjct: 212 GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 70.3 bits (173), Expect = 5e-13 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 50/217 (23%) Query: 53 IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRRARLGISYLP 106 I + G +GAGKT+ ++GL G I ++G D K +P +R I Y+ Sbjct: 26 ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR---RIGYVF 82 Query: 107 QEASIFRGLTVEENILAVLEVYEKDKKKRHE--------KLDSLLKEFNITKWRHVLAPL 158 Q+A +F V N+ Y K + ++ LL + + Sbjct: 83 QDARLFPHYKVRGNLR-----YGMAKSMVAQFDKIVALLGIEPLLDRYPGS--------- 128 Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD---------LASR-G 208 LSGG+++R+ I R+L++ P +L+DEP A +D L R LA Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD---------LPRKRELLPYLERLAREIN 179 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 I IL H++ EIL L DR ++ G V A G ++E+ Sbjct: 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 69.6 bits (171), Expect = 8e-13 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 31/161 (19%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRRA 98 V+ V KPG+ V ++GP GAGK+T ++ + SG I IDG DI + RR Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410 Query: 99 RLGISYLPQEASIF-RGLTVEENIL-----AVL-EVYEKDKK--------KRHEKLDSLL 143 I+ + Q+A +F R ++E+NI A E+ ++ ++ + D+++ Sbjct: 411 ---IAVVFQDAGLFNR--SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465 Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDE 184 E R LSGG+R+RL IAR+L+ P ++LDE Sbjct: 466 GE------R---GRQLSGGERQRLAIARALLKDPPILILDE 497 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 69.4 bits (170), Expect = 8e-13 Identities = 53/225 (23%), Positives = 109/225 (48%), Gaps = 9/225 (4%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI---TKMPMYR- 96 + V+ + G+ ++G G+GK+T + L+ +G++ +D I TK R Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 Query: 97 -RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155 R R+G+ + E+ +F TVE I+ + ++ + + LL + ++ Sbjct: 83 VRKRIGMVFQFPESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQ 141 Query: 156 APL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILI 213 +P +SGGQ R++ I L P I+LDEP AG+DP + + L++ L I++ Sbjct: 142 SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201 Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII-DNQDVRRLYLG 257 H+++E+ D ++ G +++ + +E+ D + + ++G Sbjct: 202 VSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIG 246 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 69.2 bits (169), Expect = 1e-12 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 23/243 (9%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL-----ICADSGSIKIDGNDI 89 Y + ++L + +I L+GP+G GK+TF + + G + +DG +I Sbjct: 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 Query: 90 --TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145 + + R R+G+ + Q+ + F +++ +N+ ++ KDKK+ + ++ LK+ Sbjct: 74 YDKDVDVVELRKRVGMVF--QKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK 130 Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199 + W V L LSGGQ++RL IAR++ P IL+DEP + +DP++ I Sbjct: 131 AAL--WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188 Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257 L+ +L + I+I HN+ + + D G ++ ++I + Y+ Sbjct: 189 LMVELK-KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETEDYIS 247 Query: 258 DRF 260 RF Sbjct: 248 GRF 250 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 69.1 bits (169), Expect = 1e-12 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 23/262 (8%) Query: 16 QENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI 75 + A K + +L Y + +K ++L + E+ ++GP+G GK+T+ + ++ Sbjct: 15 KIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 Query: 76 -----CADSGSIKIDGNDI--TKMPMYR-RARLGISYL---PQEASIFRGLTVEENILAV 124 +G I +I + R +G+ + P SI+ +T I + Sbjct: 75 ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGI 134 Query: 125 LEVYEKDKKKRHEKLDSLLKEFNI---TKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYI 180 KDKK E ++ L+ I K R H A LSGGQ++RL IAR L P I Sbjct: 135 -----KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVI 189 Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240 L+DEP + +DP++ + L+++L I+I HN+ + + D+ G V + Sbjct: 190 LMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 Query: 241 TVQEIIDNQDVRRL--YLGDRF 260 +I N +R Y+ RF Sbjct: 249 DTDKIFSNPSDKRTEDYITGRF 270 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 69.0 bits (169), Expect = 1e-12 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 25/212 (11%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRA 98 V+ ++L +KPGE +G++GP+G+GK+T ++ L G + +DG D+ P + R Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531 Query: 99 RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDK-KKRHEKLDSLLKEFNITKW 151 ++G+ + QE +F ++ +NI V K H+ + L + +N Sbjct: 532 QMGV--VLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588 Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL--ASRGI 209 LSGGQR+R+ IAR+LV P ++ DE + +D S+ +++R++ RG Sbjct: 589 EK--GANLSGGQRQRIAIARALVGNPRILIFDEATSALD--YESE-ALIMRNMREICRGR 643 Query: 210 GILITDH------NVHEILTLIDRAYIIHAGG 235 ++I H I+ L ++ I +G Sbjct: 644 TVIIIAHRLSTVRACDRIIVL-EKGQIAESGR 674 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 68.7 bits (168), Expect = 1e-12 Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 33/258 (12%) Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD------ 78 +L+A L +++ + L ++PG + LLG NGAGK+T + G + Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60 Query: 79 --SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK--- 133 +G + ++G + + R ARL + LPQ A + E +L L Y ++ Sbjct: 61 RVTGDVTLNGEPLAAIDAPRLARLR-AVLPQAAQPAFAFSAREIVL--LGRYPHARRAGA 117 Query: 134 -KRHEK--LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSF---------PSYIL 181 + L T LSGG+ R++ AR L P Y+L Sbjct: 118 LTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177 Query: 182 LDEPFAGVDPVAISDIHVL---IRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVL 237 LDEP A +D ++ H L +R LA +G+L H+ + DR ++ G ++ Sbjct: 178 LDEPTAALD---LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 Query: 238 AHGTVQEIIDNQDVRRLY 255 AHG +++ + R Y Sbjct: 235 AHGAPADVLTPAHIARCY 252 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 68.0 bits (167), Expect = 2e-12 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 29/249 (11%) Query: 20 ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79 LLS LTK Y + V + PGE++G++G +G+GKTT ++ + D+ Sbjct: 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA 60 Query: 80 GSIKIDGN-----DITKMPMYRRARLGIS---YLPQEA------SIFRGLTVEENILAVL 125 G + D+ + R RL + ++ Q + G + E ++AV Sbjct: 61 GEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG 120 Query: 126 EVYEKDKKKRH-----EKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSY 179 RH L+ I R P SGG ++RL+IAR+LV+ P Sbjct: 121 A--------RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRL 172 Query: 180 ILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLA 238 + +DEP G+D + + L+R L G+ ++I H++ L R ++ G V+ Sbjct: 173 VFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 Query: 239 HGTVQEIID 247 G +++D Sbjct: 233 SGLTDQVLD 241 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 67.8 bits (166), Expect = 3e-12 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 13/218 (5%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD----SGSIKIDGNDITKMPMYR 96 V+ ++L +K GE++ L+G +G+GK+ + GL+ SG I +DG + +P+ Sbjct: 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSI 59 Query: 97 RARLGISYLPQEA-SIFRGL-TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154 R R I+ + Q + F L T+ + + L K K+ + L+ + V Sbjct: 60 RGRH-IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118 Query: 155 L---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIG 210 L LSGG +R+ IA +L+ P +++ DEP +D V + + L+R+L G G Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248 IL+ H++ + + D ++ G ++ GTV+EI N Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 67.4 bits (165), Expect = 3e-12 Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 24/193 (12%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP--MYRR 97 ++ + ++ GE + GP+G GK+T ++ LI SG++ +G DI+ + +YR+ Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKK------RHEKLDSLLKEFNIT 149 +SY Q ++F G TV +N++ ++ + D R D++L + NI Sbjct: 82 Q---VSYCAQTPTLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTK-NIA 136 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RG 208 + LSGG+++R+ + R+L P +LLDE + +D +++ +I + Sbjct: 137 E--------LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188 Query: 209 IGILITDHNVHEI 221 I +L H+ EI Sbjct: 189 IAVLWVTHDKDEI 201 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 67.2 bits (165), Expect = 4e-12 Identities = 53/226 (23%), Positives = 106/226 (46%), Gaps = 40/226 (17%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRRARLG 101 ++ + G+ + L+GP+GAGKT+ + G + GS+KI+G ++ ++ +R+ Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH--- 424 Query: 102 ISYLPQEASIFRGLTVEENIL------------AVLE-VYEKDKKKRHEK-LDSLLKEFN 147 +S++ Q + G T+ +N+L LE + + + LD+ + + Sbjct: 425 LSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL--IRDLA 205 LS GQ +RL +AR+L+ +LLDEP A +D A S+ V+ + + Sbjct: 484 AG---------LSVGQAQRLALARALLQPCQLLLLDEPTASLD--AHSEQLVMQALNAAS 532 Query: 206 SRGIGILITDHNVHEI--LTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249 R +++T H++ L D+ +++ G ++ G E+ Sbjct: 533 RRQTTLMVT----HQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG 574 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 66.3 bits (161), Expect = 7e-12 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 25/232 (10%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKIDGNDITKMP 93 +V+ ++L +K ++ +GP+G GK+TF + L + G I G + Sbjct: 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 Query: 94 MYR---RARLGISY---LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147 + R R+G+ + P E SIF + + D+K + ++ LK Sbjct: 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGI-----NDRKILEKIVEKSLKSAA 210 Query: 148 ITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201 + W V L LSGGQ++RL IAR++ P +L+DEP + +DP+A + I LI Sbjct: 211 L--WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268 Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 +L + I+I H++ + + D + G + G + I + +R Sbjct: 269 LELKKK-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKR 319 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 66.4 bits (163), Expect = 7e-12 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 26/172 (15%) Query: 31 LTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 + K Y V+KG+DL V GE + L+GP+G GK+T M+ GL SG I I G + Sbjct: 9 VRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV 68 Query: 90 TKM-PMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSLLKE 145 ++ P R I+ + Q +++ ++V EN+ L + + + + ++R + +L+ Sbjct: 69 NELEPADR----DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE- 123 Query: 146 FNITKWRHVLAPL-------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 L PL LSGGQR+R+ + R++V P+ L DEP + +D Sbjct: 124 ---------LEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 66.0 bits (161), Expect = 9e-12 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 31/223 (13%) Query: 17 ENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTG 73 +++L +L Y S VK V L + +I +GP+G GK+T F + Sbjct: 2 STLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61 Query: 74 LI--CADSGSIKIDGNDITKM---PMYRRARLGISYL---PQEASIFRGLTVEENIL--A 123 LI G + G ++ P+ R R+G+ + P SI+ +NI A Sbjct: 62 LIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIY------DNIAYGA 115 Query: 124 VLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFP 177 + Y+ D E ++ L++ + W V L LSGGQ++RL IAR++ P Sbjct: 116 RINGYKGDMD---ELVERSLRQAAL--WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP 170 Query: 178 SYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220 IL+DEP + +DP++ I L+ +L + I+I HN+ + Sbjct: 171 EVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212 >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 65.5 bits (161), Expect = 1e-11 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 38/168 (22%) Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 L+K + ++ + + PG IVG++GPNGAGK+T F M+TG DSG+I Sbjct: 330 LSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-------- 381 Query: 91 KMPMYRRARLG----ISYLPQE-ASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSL 142 ++G ++Y+ Q ++ TV E I L +++V ++ R + Sbjct: 382 --------KIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR-----AY 428 Query: 143 LKEFNIT-----KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEP 185 + FN K +LSGG+R RL +A++L + +LLDEP Sbjct: 429 VGRFNFKGGDQQK----KVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 Score = 59.4 bits (145), Expect = 9e-10 Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 67/191 (35%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 ++K + L PG +G+LG NGAGK+T +M G+ D + +G + P + Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DK---EFEG-EARPAPGIK--- 71 Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKL-----------DSLLKEF- 146 + YLPQE + TV EN+ V EV K R ++ D+L E Sbjct: 72 --VGYLPQEPQLDPEKTVRENVEEGVAEV--KAALDRFNEIYAAYAEPDADFDALAAEQG 127 Query: 147 --------------------------------NITKWRHVLAPLLSGGQRRRLEIARSLV 174 +TK LSGG+RRR+ + R L+ Sbjct: 128 ELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK--------LSGGERRRVALCRLLL 179 Query: 175 SFPSYILLDEP 185 P +LLDEP Sbjct: 180 EKPDMLLLDEP 190 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 65.2 bits (159), Expect = 2e-11 Identities = 59/245 (24%), Positives = 121/245 (49%), Gaps = 29/245 (11%) Query: 23 DSLLSACSLTKKY---------NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73 ++LL +L+K + +V VK + ++ G+ + ++G NG+GK+T M+ G Sbjct: 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61 Query: 74 LICADSGSIKIDGNDITKMPM-YRRARLGISYLPQEASIFRGLTVEENILAVLEV----- 127 +I SG + ID + + YR R I + Q+ S L + I +L+ Sbjct: 62 MIEPTSGELLIDDHPLHFGDYSYRSQR--IRMIFQDPS--TSLNPRQRISQILDFPLRLN 117 Query: 128 YEKDKKKRHEKLDSLLKEFNI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILL 182 + + ++R +++ L++ + + + H+LAP GQ++RL +AR+L+ P I+ Sbjct: 118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAP----GQKQRLGLARALILRPKVIIA 173 Query: 183 DEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241 DE A +D S + L+ +L + GI + ++ + + D+ ++H G V+ G+ Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 Query: 242 VQEII 246 +++ Sbjct: 234 TADVL 238 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 64.7 bits (157), Expect = 2e-11 Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 35/250 (14%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT------------GLICADSGSI 82 Y+ V+K +++ +I ++GP+G GK+T + G + D+ +I Sbjct: 14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73 Query: 83 KIDGNDITKMPMYRRARLGISYL---PQEASIFRGLTVEENILAVL------EVYEKDKK 133 D+ + R R+G+ + P SIF + +L EV EK + Sbjct: 74 YSPNLDVVNL----RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLR 129 Query: 134 KRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 + +L E + LA LSGGQ++RL IAR L P IL+DEP + +DPV+ Sbjct: 130 QA-----ALWDEVKDNLHKSGLA--LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182 Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253 I L+++L + I I HN+ + D + G ++ +G EI +R Sbjct: 183 TMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKR 241 Query: 254 L--YLGDRFA 261 Y+ RF Sbjct: 242 TEDYITGRFG 251 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 65.0 bits (158), Expect = 2e-11 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 32/258 (12%) Query: 29 CSLTKK-YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY---MMTGLICAD--SGSI 82 C L K Y + V+ + ++ EI G +GP+G GK+T M L+ G + Sbjct: 11 CKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV 70 Query: 83 KIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL 139 G D+ P+ R +G+ + Q+ + F +++ +N+ L + + K +++ Sbjct: 71 HFLGQDVYGKGVDPVVVRRYIGMVF--QQPNPF-SMSIFDNVAFGLRL-NRYKGDLGDRV 126 Query: 140 DSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 L+ + W V L LSGGQ++RL IAR++ + P +LLDEP + +DP+A Sbjct: 127 KHALQGAAL--WDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184 Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYI----IHAGGVLAH----GTVQEI 245 + L+ +L + I + HN+ + + + D I G + G +I Sbjct: 185 TRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243 Query: 246 IDN--QDVRRLYLGDRFA 261 N + + Y+ +F+ Sbjct: 244 FQNPREQLTSDYISGKFS 261 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 63.8 bits (155), Expect = 4e-11 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 11/162 (6%) Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95 NS V V K G+ V ++GP GAGKTT ++ + G I IDG DI + Sbjct: 346 NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR- 404 Query: 96 RRARLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKLDSLLKEFNI 148 R I+ + Q+A +F ++ ENI EVYE K H+ + ++ Sbjct: 405 ESLRKSIATVFQDAGLF-NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDT 463 Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 LSGG+R+RL IAR+++ ++LDE + +D Sbjct: 464 LVGER--GNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 63.2 bits (154), Expect = 7e-11 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 36/198 (18%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGLICAD---SGSIKIDGNDITK 91 ++ VD +VKPG + L+G +GAGKTT ++ TG+I +D + Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS---- 833 Query: 92 MPMYRRARLGISYLPQEASIFRGLTVEENIL--------AVLEVYEKDKKKRHEKLDSLL 143 ++R+ I Y+ Q+ TV E++ + EK E ++ ++ Sbjct: 834 ---FQRS---IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKM-----EYVEEVI 882 Query: 144 KEFNITKWRHVLAPL----LSGGQRRRLEIARSLVSFPSYIL-LDEPFAGVDPVAISDIH 198 K + + + + L+ QR+RL I LV+ P +L LDEP +G+D I Sbjct: 883 KLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942 Query: 199 VLIRDLASRGIGILITDH 216 L+R LA G IL T H Sbjct: 943 KLMRKLADHGQAILCTIH 960 Score = 46.6 bits (111), Expect = 6e-06 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 29/180 (16%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI----CADSGSIKIDGND 88 + + ++K +D +KPGE+ +LG G+G +T + G I DG Sbjct: 69 RDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG-- 126 Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148 IT + + R + Y + F LTV E + K + R + + +E Sbjct: 127 ITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARC--KTPQNRPDGVS---REEYA 181 Query: 149 TKWRHVLAPLL------------------SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 V SGG+R+R+ IA + + D G+D Sbjct: 182 KHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 61.4 bits (149), Expect = 2e-10 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 17/217 (7%) Query: 38 VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR- 96 V+ V+ V + PGE + L+G +G+GK+T + L+ + G I +G I + + Sbjct: 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL 396 Query: 97 -RARLGISYLPQE--ASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNIT--- 149 R I ++ Q+ AS+ TV ++I+ L V+ K ++ LL+ + Sbjct: 397 QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH 456 Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208 WR+ SGGQR+R+ IAR+L P I+ DE + +D I L+ DL G Sbjct: 457 AWRYPHE--FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514 Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 I L H+ + +++R I H V+ G + EI Sbjct: 515 IAYLFISHD----MAVVER--ISHRVAVMYLGQIVEI 545 Score = 55.6 bits (134), Expect = 1e-08 Identities = 53/232 (22%), Positives = 107/232 (46%), Gaps = 34/232 (14%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100 V+ + ++ GE + ++G +G+GK+ + L+ G ++ D KM + RR+R Sbjct: 32 VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCD-----KMLLRRRSRQ 86 Query: 101 GISYLPQEASIFRGL--------------------TVEENILAVLEVYE---KDKKKRHE 137 I Q A+ R + TV E I + +++ +++ Sbjct: 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEA 146 Query: 138 KLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194 K +L + I + + +L+ LSGG R+R+ IA +L P+ ++ DEP +D Sbjct: 147 K--RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ 204 Query: 195 SDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + I LI+ L +G++ H++ + + DR +++ G + G+V++I Sbjct: 205 AQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 57.0 bits (138), Expect = 5e-09 Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 22/208 (10%) Query: 42 KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL- 100 + ++ + G+ V L+G +G+GK+T ++T D G I +DG+D+ Y A L Sbjct: 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD---YTLASLR 416 Query: 101 -GISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL--- 155 ++ + Q +F T+ NI A E Y +++ + ++ + +F I K + L Sbjct: 417 NQVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAM-DF-INKMDNGLDTV 473 Query: 156 ----APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211 LLSGGQR+R+ IAR+L+ ++LDE + +D + I + +L + Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533 Query: 212 LI-----TDHNVHEILTLIDRAYIIHAG 234 +I T EIL +++ I+ G Sbjct: 534 VIAHRLSTIEKADEIL-VVEDGEIVERG 560 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 55.6 bits (134), Expect = 1e-08 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 23/215 (10%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFF--YMMTGLICADSGSIKIDGNDITKMPMYRR 97 V++GV + P E VG++G G+GK+T +M +C G I+++G +I + R Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG--GEIRVNGREIGAYGL-RE 1381 Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157 R S +PQ+ +F G TV +N+ LE + E + L+E ++ + + Sbjct: 1382 LRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVG--LRERVASESEGIDSR 1438 Query: 158 LLSG------GQRRRLEIARSLVSFPS-YILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210 +L G GQR+ + +AR+L+ S +IL+DE A +DP I + S Sbjct: 1439 VLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTV 1498 Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 I I H +H T+ II V+ HG V E+ Sbjct: 1499 ITIA-HRLH---TVAQYDKII----VMDHGAVAEM 1525 Score = 41.3 bits (97), Expect = 3e-04 Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 58/220 (26%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103 V + V G++ +LG G+GK+T + G + A I+ Sbjct: 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------------WAERSIA 724 Query: 104 YLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL----- 158 Y+PQ+A I TV NIL E E L +++ LA L Sbjct: 725 YVPQQAWIMNA-TVRGNILFFDE----------EDAARLADAVRVSQLEADLAQLGGGLE 773 Query: 159 ---------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDL-- 204 LSGGQ+ R+ +AR++ + LLD DP++ D HV ++ + Sbjct: 774 TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD------DPLSALDAHVGERVVEECFL 827 Query: 205 -ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQ 243 A G ++ H VH ++ D Y++ L G V+ Sbjct: 828 GALAGKTRVLATHQVH-VVPRAD--YVV----ALGDGRVE 860 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 55.7 bits (134), Expect = 1e-08 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 14/212 (6%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98 Y + + V GEIVG++G NG+GK+T ++ G+ + G++ I G+ A Sbjct: 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS---------AA 88 Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158 + IS + + LT ENI + K+K E + +++ +I K+ + Sbjct: 89 LIAIS-----SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKT 143 Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218 S G + RL A S+ P +++DE + D + + +G I H++ Sbjct: 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203 Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250 ++ + +A +H G V +G ++E++D+ D Sbjct: 204 SQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 55.6 bits (134), Expect = 1e-08 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 29/206 (14%) Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI 102 G+DL + + ++GPNG GK+T +++G + SG++ +R A++ + Sbjct: 531 GIDLDSR----IAMVGPNGIGKSTILKLISGELQPSSGTV------------FRSAKVRM 574 Query: 103 SYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL--L 159 + Q GL + N +L ++ + + +KL + L F +T L P+ L Sbjct: 575 AVFSQHH--VDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGSFGVTG-NLALQPMYTL 628 Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219 SGGQ+ R+ A+ P +LLDEP +D + + LI+ L G+L+ H+ H Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLD---LDAVEALIQGLVLFQGGVLMVSHDEH 685 Query: 220 EILTLIDRAYIIHAGGVLA-HGTVQE 244 I +D +++ G V HGT + Sbjct: 686 LISGSVDELWVVSEGKVTPFHGTFHD 711 Score = 32.5 bits (74), Expect = 0.12 Identities = 14/26 (53%), Positives = 18/26 (69%) Query: 160 SGGQRRRLEIARSLVSFPSYILLDEP 185 SGG R R+ +AR+L P +LLDEP Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEP 371 Score = 27.5 bits (61), Expect = 3.7 Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 51 GEIVGLLGPNGAGKTTFFYMM 71 G GL+G NG GKTTF M Sbjct: 203 GRHYGLVGRNGTGKTTFLRYM 223 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 55.7 bits (135), Expect = 1e-08 Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 11/153 (7%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100 V ++L +K GE++ L+G NG+GK+T ++TGL SG I +DG +T +L Sbjct: 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 Query: 101 GISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLLKEFNITKWRHVLAPL 158 S + + +F L E A + EK ++ K KL+ L++ I+ + Sbjct: 399 -FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE--LEDGRISNLK------ 449 Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 LS GQ++RL + +L +LLDE A DP Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDP 482 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 55.1 bits (133), Expect = 2e-08 Identities = 60/247 (24%), Positives = 122/247 (49%), Gaps = 19/247 (7%) Query: 17 ENRASKDSLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKT-TFFYMM 71 + D+LL L +++ V V ++ ++ GE +G++G +G+GK+ T F +M Sbjct: 4 LAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM 63 Query: 72 TGLICAD---SGSIKIDGNDITKMPMYRRARL---GISYLPQE--ASIFRGLTVEENILA 123 GL+ A+ GS +G +I +P +L IS + Q+ S+ + V E ++ Sbjct: 64 -GLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122 Query: 124 VLEVYEK-DKKKRHEKLDSLLKEFNI--TKWRHVLAPL-LSGGQRRRLEIARSLVSFPSY 179 VL +++ K + E+ +L + + R + P SGG R+R+ IA +L+ P Sbjct: 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 182 Query: 180 ILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLA 238 ++ DEP +D + I L+ +L I++ H++ + + D+ +++AG + Sbjct: 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 Query: 239 HGTVQEI 245 +G +++ Sbjct: 243 YGNARDV 249 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 54.1 bits (130), Expect = 3e-08 Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 55/235 (23%) Query: 6 NYLGIEMP-EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGK 64 NY ++MP E +E ++D L +++ V +PG + L+G +GAGK Sbjct: 874 NYF-VDMPAEMKEQGVTEDRL-------------QLLREVTGAFRPGVLTALMGVSGAGK 919 Query: 65 TTFFYMMTGLICAD--SGSIKIDG-----------------NDITKMPMYRRARLGIS-- 103 TT ++ G G I+I G NDI + R L S Sbjct: 920 TTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979 Query: 104 -YLPQEASIFRGLT-VEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSG 161 LP+E S + V+E V+E+ E D K D+++ +T LS Sbjct: 980 LRLPKEVSKEEKMMFVDE----VMELVELDNLK-----DAIVGLPGVTG--------LST 1022 Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216 QR+RL IA LV+ PS I +DEP +G+D A + + +R+ G ++ T H Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077 Score = 31.0 bits (70), Expect = 0.29 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89 +L KK + ++K +KP + LLGP +GKTT + G + S+K+ G +I Sbjct: 171 NLAKK-TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL---DPSLKVSG-EI 225 Query: 90 TKMPMYRRARLGISYLPQEASIF 112 T Y RL ++P++ S + Sbjct: 226 T----YNGYRLN-EFVPRKTSAY 243 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 53.6 bits (129), Expect = 5e-08 Identities = 52/214 (24%), Positives = 104/214 (48%), Gaps = 18/214 (8%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLI------CADSGSIKIDGNDITKMPMYRRARL- 100 VK GE+VG++G +G+GK+ + GLI A+ ++ +G D+ ++ R L Sbjct: 30 VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK--LEFNGQDLQRISEKERRNLV 87 Query: 101 --GISYLPQEA--SIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKEFNI---TKWR 152 ++ + Q+ S+ TV I+ ++V++ +KK R ++ LL + I Sbjct: 88 GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL 147 Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211 V LSGG +R+ IA ++ P ++ DEP +D + I L+ +L + + + Sbjct: 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMAL 207 Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 ++ H++ + + +++AG V+ G +I Sbjct: 208 VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 53.4 bits (129), Expect = 6e-08 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 18/148 (12%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100 VK V+ G+ + L+GPNG GKTT +M G + ADSG I TK L Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG----TK--------L 382 Query: 101 GISYLPQ-EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL- 158 ++Y Q A + TV +N+ + + + RH + L++F R + P+ Sbjct: 383 EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRH--VLGYLQDFLFHPKR-AMTPVK 439 Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEP 185 LSGG+R RL +AR + + ++LDEP Sbjct: 440 ALSGGERNRLLLARLFLKPSNLLILDEP 467 Score = 50.7 bits (122), Expect = 3e-07 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 50/176 (28%) Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104 +L+++ E V L+G NGAGK+T ++ G + D G I + + L ++ Sbjct: 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD------------LIVAR 70 Query: 105 LPQ------EASIF----RGLTVEENILAVLEVY-------EKDKKKRH----EKLDSLL 143 L Q E +++ G+ E L+ Y E D +++ KL L Sbjct: 71 LQQDPPRNVEGTVYDFVAEGI---EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127 Query: 144 KEFNI----TKWRHVLAPL----------LSGGQRRRLEIARSLVSFPSYILLDEP 185 N+ + VLA L LSGG R+ + R+LVS P +LLDEP Sbjct: 128 DHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 53.1 bits (128), Expect = 7e-08 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 40/202 (19%) Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGN- 87 YN ++ + V PGE ++GPNGAGK+T LI D S + + G Sbjct: 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL----SLITGDHPQGYSNDLTLFGRR 324 Query: 88 --------DITKMPMYRRARLGISYLPQEASIFRGLTVEENILA----VLEVYEKDKKKR 135 DI K Y + L + Y S +V IL+ + +Y+ ++ Sbjct: 325 RGSGETIWDIKKHIGYVSSSLHLDY---RVST----SVRNVILSGFFDSIGIYQAVSDRQ 377 Query: 136 HEKLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 + L I K R AP LS GQ+R I R+LV P+ ++LDEP G+DP Sbjct: 378 QKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP-- 434 Query: 194 ISDIHVLIRDLASRGIGILITD 215 L R L R + +LI++ Sbjct: 435 ------LNRQLVRRFVDVLISE 450 Score = 45.8 bits (109), Expect = 1e-05 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%) Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218 LS G+ R+ + ++L+S P ++LDEPF G+D + + L+ L GI +++ + Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195 Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251 EI + A GVLA T+ E + +++ Sbjct: 196 DEIPDFVQFA------GVLADCTLAETGEREEI 222 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 52.3 bits (125), Expect = 1e-07 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 35/213 (16%) Query: 35 YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM 94 Y + V L + +I+ +GP+G GK+T L C + + I G + + Sbjct: 30 YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTL------LRCFNRMNDLIPGAKVEGRLL 83 Query: 95 YR------------RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142 YR + R + + Q + F ++ ENI + LD L Sbjct: 84 YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENI-----AFAPRANGYKGNLDEL 137 Query: 143 LKEFNITK---WRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193 + E ++ + W V L LSGGQ++RL IAR++ P +L+DEP + +DP++ Sbjct: 138 V-EDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIS 196 Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLID 226 + L +L + I++T HN+ + + D Sbjct: 197 TRQVEELCLELKEQYTIIMVT-HNMQQASRVAD 228 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 52.3 bits (125), Expect = 1e-07 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 18/212 (8%) Query: 39 YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98 V++ +++ + GE VG++G GAGK++ + + + G I IDG +I K+ ++ Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH-DL 1358 Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT---KWRHVL 155 R I+ +PQ+ +F G ++ N+ + +++ E + LK F K H Sbjct: 1359 RFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALEL--AHLKTFVSALPDKLDHEC 1415 Query: 156 A---PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212 A LS GQR+ + +AR+L+ ++LDE A VD + I IR + Sbjct: 1416 AEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLT 1475 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244 I H + T++D +I VL G V E Sbjct: 1476 IA----HRLNTIMDYTRVI----VLDKGEVAE 1499 Score = 50.3 bits (120), Expect = 5e-07 Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 30/215 (13%) Query: 43 GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI 102 G+ + G +V ++G G GK++ + + G + + G+ + Sbjct: 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--------------V 701 Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW--RHVLAPL-- 158 +Y+PQ+A I + ++ ENIL + EK ++ E +LL + I R + Sbjct: 702 AYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLEAC-ALLPDLEILPSGDRTEIGEKGV 759 Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI-----GIL 212 LSGGQ++R+ +AR++ S L D+P + VD A H+ + G+ IL Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD--AHVGKHIFEHVIGPEGVLKNKTRIL 817 Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247 +T H + L +D ++ G + G+ QE++ Sbjct: 818 VT-HGI-SYLPQVDVIIVMSGGKISEMGSYQELLQ 850 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 51.3 bits (123), Expect = 2e-07 Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 17/165 (10%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL--ICADSGSIKIDGNDITKMPMYRR 97 +++G++L V+PGE+ ++GPNG+GK+T + G G+++ G D+ ++ R Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75 Query: 98 ARLGI----SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153 A GI Y + + ++ + AV ++ R + D + ++ + K Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK--- 132 Query: 154 VLAPLL--------SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 + LL SGG+++R +I + V P +LDE +G+D Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 51.3 bits (123), Expect = 2e-07 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 28/224 (12%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99 V++ ++L V V L+G G+GK+T ++ G G I++DG ++ + + R Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-HSVLR 414 Query: 100 LGISYLPQE-----ASIFRGLTV-----EENILAVLEVYEKDKKKRH--EKLDSLLKEFN 147 G++ + Q+ + +T+ EE + LE + + R + L + L E Sbjct: 415 QGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474 Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207 LS GQ++ L +AR LV P ++LDE A +D I + + Sbjct: 475 NN---------LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH 525 Query: 208 GIGILITDHNVHEILTLIDRAYII--HAGGVLAHGTVQEIIDNQ 249 ++I H + T+++ I+ H G + GT Q+++ Q Sbjct: 526 TTLVVIA----HRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 51.0 bits (123), Expect = 3e-07 Identities = 19/54 (35%), Positives = 35/54 (64%) Query: 30 SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83 +LTK +++ + K ++L ++ GE + ++G NG GKTT + G + DSG++K Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377 Score = 32.2 bits (74), Expect = 0.15 Identities = 13/34 (38%), Positives = 23/34 (67%) Query: 55 GLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88 GL+G NG GK+TF ++ G + +G++ +D N+ Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE 64 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 50.1 bits (120), Expect = 5e-07 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 37/226 (16%) Query: 41 VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA------------DSGSIKIDGND 88 V GV L ++ G ++ L+G +G+GK+ L CA +G + +DG Sbjct: 19 VHGVSLTLQRGRVLALVGGSGSGKS--------LTCAAALGILPAGVRQTAGRVLLDGKP 70 Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLT-----VEENILAVLEVYEKDKKKRHEKLDSLL 143 + P R R + + S F L E LA+ K L + L Sbjct: 71 VA--PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL------GKPADDATLTAAL 122 Query: 144 KEFNITKWRHVL---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200 + + VL +SGG +R+ IA +L+ +I+ DEP +D VA + I L Sbjct: 123 EAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182 Query: 201 IRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245 + + R +G+L+ H++ + L D ++ G ++ G V+ + Sbjct: 183 LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 50.1 bits (120), Expect = 6e-07 Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 49/232 (21%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98 ++ V+ +KPG+++G+ GP G+GK+T ++ G I+ +TK+ + R+ Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 Query: 99 RLGI-SYLP---------------------QEASIFRGLTVEENILAVLEVYEKDKKKRH 136 RL + S P + + R +V ++IL + + Y+ + +R Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGER- 448 Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196 +LSGGQ++R+ IAR+L+ ++LD+ + VD Sbjct: 449 -------------------GVMLSGGQKQRISIARALLLNAEILILDDALSAVDG---RT 486 Query: 197 IHVLIRDLASRGIG--ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 H ++ +L G G ++I+ H + LT ++ G + G ++ Sbjct: 487 EHQILHNLRQWGEGRTVIISAHRL-SALTEASEILVMQHGHIAQRGNHDQLA 537 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 48.1 bits (114), Expect = 2e-06 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 18/186 (9%) Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137 +SG I +DG DI + + R S + QE +F +++ ENI E ++ KR Sbjct: 1275 NSGKILLDGVDICDYNL-KDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRAC 1332 Query: 138 K---LDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191 K +D ++ K+ + P LSGGQ++R+ IAR+L+ P +LLDE + +D Sbjct: 1333 KFAAIDEFIESLP-NKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII-------HAGGVLAHGTVQE 244 + I I D+ + +IT H I ++ I+ V AHGT +E Sbjct: 1392 NSEKLIEKTIVDIKDKADKTIITI--AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449 Query: 245 IIDNQD 250 ++ QD Sbjct: 1450 LLSVQD 1455 Score = 36.2 bits (83), Expect = 0.008 Identities = 15/35 (42%), Positives = 25/35 (71%) Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190 A LSGGQ++R+ IAR+++ P ++LDE + +D Sbjct: 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 46.7 bits (111), Expect = 6e-06 Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 65/178 (36%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107 + PG+ VGL+G NG GK+T ++ I AD GS GN ++++ Q Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN------------WQLAWVNQ 71 Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKR---------------------HEKLDSLLKEF 146 E T A+ V + D++ R H KLD+ Sbjct: 72 E-------TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDA----- 119 Query: 147 NITKW--RHVLAPLL-----------------SGGQRRRLEIARSLVSFPSYILLDEP 185 I W R A LL SGG R RL +A++L+ +LLDEP Sbjct: 120 -IDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176 Score = 44.4 bits (105), Expect = 3e-05 Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 22/224 (9%) Query: 15 FQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74 F+ + + LL ++ Y ++ + L + PG +GLLG NGAGK+T ++ G Sbjct: 302 FRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361 Query: 75 ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134 + SG I + + +LG Y Q F L +E+ L L ++ Sbjct: 362 LAPVSGEIG----------LAKGIKLG--YFAQHQLEF--LRADESPLQHLA--RLAPQE 405 Query: 135 RHEKLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 +KL L F + V SGG++ RL +A + P+ +LLDEP +D Sbjct: 406 LEQKLRDYLGGFGF-QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD-- 462 Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236 + L L +++ H+ H + + D Y++H G V Sbjct: 463 -LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 46.1 bits (110), Expect = 8e-06 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 24/188 (12%) Query: 23 DSLLSACSLTKKYN----------SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72 LL A L K Y V + GV ++ G+ + ++G +G GK+T ++T Sbjct: 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT 62 Query: 73 GLICADSGSIKIDGNDITKMP----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY 128 + G + G D+ K R ++ I + S+ V + + L + Sbjct: 63 MIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN 122 Query: 129 EK-DKKKRHEKLDSL-----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILL 182 +R EK ++ L+ + ++ H + SGGQR+R+ IAR+L+ P ++ Sbjct: 123 TSLSAAERREKALAMMAKVGLRPEHYDRYPH----MFSGGQRQRIAIARALMLDPDVVVA 178 Query: 183 DEPFAGVD 190 DEP + +D Sbjct: 179 DEPVSALD 186 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 45.7 bits (108), Expect = 1e-05 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 11/198 (5%) Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103 +DL + G+IV ++G NG GK+T + GL G I +DG ++ A Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS-------ADSRDD 413 Query: 104 YLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE--FNITKWRHVLAPLLSG 161 Y ++IF + ++++ E + L L I LS Sbjct: 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473 Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRDLASRGIGILITDHNVHE 220 GQ++RL + + + +L DE A DP + L+ DL +G I+I H+ + Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD-DQ 532 Query: 221 ILTLIDRAYIIHAGGVLA 238 L D+ + AG ++ Sbjct: 533 YFELADQIIKLAAGCIVK 550 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 43.7 bits (103), Expect = 5e-05 Identities = 18/74 (24%), Positives = 38/74 (51%) Query: 14 EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73 E++ R +K+ + A K + + + + L G+++GL+G NG+GK+T ++ G Sbjct: 13 EYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG 72 Query: 74 LICADSGSIKIDGN 87 + G + +G Sbjct: 73 SLSPTVGKVDRNGE 86 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 41.8 bits (98), Expect = 2e-04 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 10/135 (7%) Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEA 109 P I + G NG GK++ M+ G++ SG+I +I + A+ +Y+ Sbjct: 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-----AKPYCTYIGHNL 79 Query: 110 SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEI 169 + +TV EN+ E+Y E L + + F + LS G ++ + I Sbjct: 80 GLKLEMTVFENLKFWSEIYNSA-----ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAI 134 Query: 170 ARSLVSFPSYILLDE 184 AR + LLDE Sbjct: 135 ARLIACQSDLWLLDE 149 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 41.4 bits (97), Expect = 2e-04 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 39/179 (21%) Query: 76 CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI-FRGLTVEENILAVLEV--YEKDK 132 C GSI N T +P + LG +LPQ + ++G +NI +LE+ YE +K Sbjct: 726 CQGLGSITTTDNR-TSIPC--PSCLGKRFLPQVLEVRYKG----KNIADILEMTAYEAEK 778 Query: 133 -----KKRHEKLDSL----LKEFNITKWRHVLAPL--LSGGQRRRLEIARSL---VSFPS 178 HEK+ +L L + + PL LSGG+ +RL++A L P+ Sbjct: 779 FFLDEPSIHEKIHALCSLGLDYLPLGR------PLSSLSGGEIQRLKLAYELLAPSKKPT 832 Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLAS---RGIGILITDHNVHEILTLIDRAYIIHAG 234 +LDEP G+ DI LI L S +G ++I +HN+H ++ + D Y++ G Sbjct: 833 LYVLDEPTTGLH---THDIKALIYVLQSLTHQGHTVVIIEHNMH-VVKVAD--YVLELG 885 Score = 41.0 bits (96), Expect = 3e-04 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 17/104 (16%) Query: 159 LSGGQRRRLEIARSL---VSFPSYILLDEPFAGVDPVAISDIHVL---IRDLASRGIGIL 212 LSGG++ R +A+ L + +YIL DEP G+ P D H L I+ L +G +L Sbjct: 477 LSGGEQERTALAKHLGAELIGITYIL-DEPSIGLHP---QDTHKLINVIKKLRDQGNTVL 532 Query: 213 ITDHNVHEILTLIDRAYI------IHAGGVLAHGTVQEIIDNQD 250 + +H+ ++++L DR I G VL +G+ +E + D Sbjct: 533 LVEHD-EQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSD 575 Score = 36.7 bits (85), Expect = 0.007 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%) Query: 159 LSGGQRRRLEIARSLV---SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215 LS ++ ++IA+ L P+ LLDE +D S + V +R L S G ++ D Sbjct: 1700 LSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759 Query: 216 HNVHEILTLIDRA-YIIHAG 234 H+ L+ +A Y+I G Sbjct: 1760 HDPA----LLKQADYLIEMG 1775 Score = 31.7 bits (72), Expect = 0.22 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Query: 159 LSGGQRRRLEIARSLVSFPSYI--LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216 LS G+ RL +A+ + S + I LL++P +G+ P + LI++L + ++ TD Sbjct: 1388 LSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDR 1447 Query: 217 N 217 + Sbjct: 1448 S 1448 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 39.7 bits (93), Expect = 8e-04 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 29/150 (19%) Query: 48 VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107 V G + + GPNG GK++ F ++ L G + A+ + Y+PQ Sbjct: 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP------------AKGKLFYVPQ 522 Query: 108 EASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKWRHVL----------- 155 + G T+ + I+ + K + + L+ +L +T H+L Sbjct: 523 RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT---HILEREGGWSAVQD 578 Query: 156 -APLLSGGQRRRLEIARSLVSFPSYILLDE 184 +LSGG+++R+ +AR P + +LDE Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDE 608 >gnl|CDD|162972 TIGR02680, TIGR02680, conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. Length = 1353 Score = 35.9 bits (83), Expect = 0.011 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 20/72 (27%) Query: 150 KWRHVLAPL--LSGGQRRRLEIARSLVSF---------------PSYILLDEPFAGVDPV 192 +WR + SGG+R +A + F P ILLDE FAGVD Sbjct: 1237 QWRPLTHRFGPASGGERA---LALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDN 1293 Query: 193 AISDIHVLIRDL 204 A + + L+R L Sbjct: 1294 ARAHLFGLLRAL 1305 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 35.5 bits (82), Expect = 0.014 Identities = 51/235 (21%), Positives = 101/235 (42%), Gaps = 36/235 (15%) Query: 41 VKGVD---LYVKPGEIVGLLGPNGAGKTTFFYMMTGL------ICADSGSIKIDGNDITK 91 VK VD + + GEI GL+G +G+GK+ + G+ + AD ++ D D+ + Sbjct: 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD--RMRFDDIDLLR 77 Query: 92 M-PMYRRARLG--ISYLPQE--------ASIFRGLTVEENILAVLEVYEKDK-----KKR 135 + P RR +G +S + QE + R L + + K + R Sbjct: 78 LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL-----MQNIPGWTYKGRWWQRFGWR 132 Query: 136 HEKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192 + LL I + + L+ G+ +++ IA +L + P ++ DEP ++P Sbjct: 133 KRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPT 192 Query: 193 AISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246 + I L+ L + IL+ H++ + D+ +++ G + +E++ Sbjct: 193 TQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 34.7 bits (79), Expect = 0.022 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK-IDGNDITKMPMYRRARLGI 102 PGE++ ++GP G+GKTT + + G + IDG DI + + + + + Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV 54 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 34.6 bits (80), Expect = 0.028 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 22/117 (18%) Query: 159 LSGGQRRRLEIARSLVSFPSYIL--LDEPFAGVDPVAISDIHVLI------RDLASRGIG 210 LSGG+ +R+ +A + S + +L LDEP G+ D LI RDL G Sbjct: 488 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ---RDNERLINTLKRLRDL---GNT 541 Query: 211 ILITDHNVHEILT---LID---RAYIIHAGGVLAHGTVQEIIDNQD-VRRLYLGDRF 260 +++ +H+ I +ID A I H G V+A GT +EI+ N D + YL + Sbjct: 542 VIVVEHDEETIRAADYVIDIGPGAGI-HGGEVVASGTPEEILANPDSLTGQYLSGKK 597 >gnl|CDD|152834 pfam12399, BCA_ABC_TP_C, Branched-chain amino acid ATP-binding cassette transporter. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 30 amino acids in length. The family is found in association with pfam00005. There is a conserved AYLG sequence motif. This family is the C terminal of an ATP dependent branched-chain amino acid transporter. Length = 23 Score = 33.3 bits (78), Expect = 0.061 Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 236 VLAHGTVQEIIDNQDVRRLYLG 257 V+A GT E+ + V YLG Sbjct: 2 VIAEGTPAEVRADPAVIEAYLG 23 >gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase. Length = 656 Score = 33.3 bits (76), Expect = 0.067 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 9/44 (20%) Query: 53 IVGLLGPNGAGKTTF------FYMMTGLICADS---GSIKIDGN 87 +VG+ GP+GAGKT F F +I D+ S IDGN Sbjct: 67 LVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN 110 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 31.8 bits (73), Expect = 0.17 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 47 YVKPGEIVGLLGPNGAGKTT 66 ++ G+ V LLG +G GK+T Sbjct: 191 WLSGGKTVALLGSSGVGKST 210 >gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed. Length = 782 Score = 30.6 bits (70), Expect = 0.48 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 9/48 (18%) Query: 174 VSFPSYILLDEPFAGVDPV-----AISDIHVLIRDLASRGIGILITDH 216 S +L DE AG DP AIS ++ L RG I+ T H Sbjct: 405 ADKNSLVLFDELGAGTDPDEGAALAIS----ILEYLRKRGAKIIATTH 448 >gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein VexC; Provisional. Length = 213 Score = 29.6 bits (66), Expect = 0.73 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 15/93 (16%) Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS-IKIDGNDITKMPMYRRA 98 V+ D + E +G+L G+GKTT ++ GL D G I + G+ + Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------- 53 Query: 99 RLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131 L + I GLT EEN + +Y D Sbjct: 54 ------LGANSFILPGLTGEENARMMASLYGLD 80 >gnl|CDD|180463 PRK06199, PRK06199, ornithine cyclodeaminase; Validated. Length = 379 Score = 29.7 bits (67), Expect = 0.88 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Query: 46 LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG 86 L K ++VGLLGP GKT M +C +IKI G Sbjct: 150 LARKDSKVVGLLGPGVMGKTILAAFMA--VCPGIDTIKIKG 188 >gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 424 Score = 29.5 bits (67), Expect = 0.92 Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 48 VKPGEIVGLLGPNGAGKTT 66 +K G +V L+GP G GKTT Sbjct: 218 LKQGGVVALVGPTGVGKTT 236 >gnl|CDD|139425 PRK13248, PRK13248, phycoerythrobilin:ferredoxin oxidoreductase; Provisional. Length = 253 Score = 28.7 bits (64), Expect = 1.5 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 11/53 (20%) Query: 163 QRRRLEIARSL-VSFPSYILLD----------EPFAGVDPVAISDIHVLIRDL 204 ++R++ AR++ ++ P+Y +L+ PF GVD V++ + H+L+ D Sbjct: 65 HKKRIQFARAVCINSPNYSVLNFLIIPNTIYNVPFFGVDFVSLPNSHLLVLDF 117 >gnl|CDD|178749 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional. Length = 1153 Score = 28.7 bits (64), Expect = 1.6 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 53 IVGLLGPNGAGKTTFF-YMMTGLICADSGSIKIDGNDITK-MPMYRRARL 100 +VG+ G +G GKTT + + L S+ ID I+K M +Y A Sbjct: 209 MVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANP 258 >gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional. Length = 559 Score = 28.4 bits (63), Expect = 1.7 Identities = 10/16 (62%), Positives = 13/16 (81%) Query: 51 GEIVGLLGPNGAGKTT 66 G ++ L+GP GAGKTT Sbjct: 350 GGVIALVGPTGAGKTT 365 >gnl|CDD|162206 TIGR01110, mdcA, malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase. Length = 543 Score = 28.7 bits (64), Expect = 1.8 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%) Query: 166 RLEIARSLVSF------PSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209 R++I S V F P YI EP DP I+D+ VL+ +A +GI Sbjct: 190 RVDIPASWVDFVIESPKPFYI---EPLFTRDPANITDVQVLMAMMAIKGI 236 >gnl|CDD|117805 pfam09259, Fve, Fungal immunomodulatory protein Fve. Fve is a major fruiting body protein from Flammulina velutipes, a mushroom possessing immunomodulatory activity. It stimulates lymphocyte mitogenesis, suppresses systemic anaphylaxis reactions and oedema, enhances transcription of IL-2, IFN-gamma and TNF-alpha, and haemagglutinates red blood cells. It appears to be a lectin with specificity for complex cell-surface carbohydrates. Fve adopts a tertiary structure consisting of an immunoglobulin-like beta-sandwich, with seven strands arranged in two beta sheets, in a Greek-key topology. It forms a non-covalently linked homodimer containing no Cys, His or Met residues; dimerization occurs by 3-D domain swapping of the N-terminal helices and is stabilized predominantly by hydrophobic interactions. Length = 111 Score = 28.5 bits (63), Expect = 2.0 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 K Y+ V G DL V+P V P+G K F G AD+ +I++ Sbjct: 45 KAYSYRVAVNGRDLGVEPNFAV---EPDGGQKINFLEYNKGYGIADTKTIQV 93 >gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated. Length = 822 Score = 28.0 bits (63), Expect = 2.2 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%) Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYII 231 LI+++ RG+G T H++ I L R Y+I Sbjct: 482 LIKEMEKRGLGTKATRHDI--IEKLYKRGYVI 511 >gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. Length = 650 Score = 28.1 bits (63), Expect = 2.3 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 44 VDLYVKPGEIVGLLGP-NGAGKTTF 67 DL + + L+G NGAGKTT Sbjct: 20 FDLSPSSPKPIILIGGLNGAGKTTL 44 >gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase. Length = 347 Score = 27.8 bits (62), Expect = 3.0 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICAD---SGSIKID 85 P ++G+ P G GKTT + + L A + S+ ID Sbjct: 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSID 137 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 27.6 bits (62), Expect = 3.2 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 46 LYVKPGE--IVGLLGPNGAGKTTF 67 L +P IVG+ GP GAGK+T Sbjct: 26 LQAEPQRRTIVGIAGPPGAGKSTL 49 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 27.7 bits (62), Expect = 3.2 Identities = 8/16 (50%), Positives = 11/16 (68%) Query: 50 PGEIVGLLGPNGAGKT 65 I G++GPNG GK+ Sbjct: 22 DKGITGIVGPNGCGKS 37 >gnl|CDD|149646 pfam08659, KR, KR domain. This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 Score = 27.1 bits (61), Expect = 4.5 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 16/90 (17%) Query: 167 LEIARSLV-SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL-----ITDHN-VH 219 LE+AR L +++L DP A + L+ +L +RG + ++D + V Sbjct: 14 LELARWLAERGARHLVLLSRSGAPDPEAEA----LLAELEARGAEVTVVACDVSDRDAVA 69 Query: 220 EILTLIDRAY-----IIHAGGVLAHGTVQE 244 +L I +IHA GVL + Sbjct: 70 ALLAEIRADGPPLRGVIHAAGVLRDALLAN 99 >gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed. Length = 772 Score = 27.0 bits (60), Expect = 4.7 Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 54 VGLLGPNGAGKTTFFYMMTG 73 +GL+G +GKTT F +TG Sbjct: 6 IGLIGNPNSGKTTLFNQLTG 25 >gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed. Length = 437 Score = 27.0 bits (60), Expect = 5.1 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 9/47 (19%) Query: 80 GSIKIDGNDITKMPMYRRAR------LGISYL-PQEASIFRGLTVEE 119 GS+ ID ++T AR ISYL PQE FRG T+ E Sbjct: 26 GSVVID--EVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPE 70 >gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed. Length = 687 Score = 26.8 bits (60), Expect = 5.6 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 23/76 (30%) Query: 54 VGLLGPNGAGKTT-----FFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQE 108 +G+L AGKTT FY TG I G ++ DG +T ++PQE Sbjct: 11 IGILAHIDAGKTTLTERILFY--TGKIHK-MGEVE-DGTTVT------------DWMPQE 54 Query: 109 ASIFRGLTVEENILAV 124 RG+T+E + Sbjct: 55 QE--RGITIESAATSC 68 >gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated. Length = 226 Score = 26.9 bits (60), Expect = 5.7 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%) Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90 P +V L GP G+GKT + S ++ I N+I Sbjct: 43 PSPVVVLAGPVGSGKTHL----ASIWREKSDALLIHPNEIG 79 >gnl|CDD|179887 PRK04863, mukB, cell division protein MukB; Provisional. Length = 1486 Score = 26.5 bits (59), Expect = 6.9 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 7/27 (25%) Query: 53 IVGLLGPNGAGKTT----FFYMMTGLI 75 + L G NGAGK+T F +T LI Sbjct: 29 VTTLSGGNGAGKSTTMAAF---VTALI 52 >gnl|CDD|172383 PRK13862, PRK13862, putative crown gall tumor protein VirC2; Provisional. Length = 201 Score = 26.4 bits (58), Expect = 7.0 Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 157 PLLSGGQRRRLEIARSLVSFPS 178 P LS G+ RRL AR + P Sbjct: 6 PALSVGEARRLAAARPEIVHPE 27 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 26.7 bits (60), Expect = 7.0 Identities = 7/13 (53%), Positives = 9/13 (69%) Query: 53 IVGLLGPNGAGKT 65 + L+G NG GKT Sbjct: 25 VNVLVGENGQGKT 37 >gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. Length = 282 Score = 26.5 bits (59), Expect = 7.3 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 51 GEIVGLLGPNGAGKTT 66 G ++ L+GP G GKTT Sbjct: 194 GGVIALVGPTGVGKTT 209 >gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional. Length = 508 Score = 26.6 bits (59), Expect = 7.7 Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 23 DSLLSACSLTKKYNSVYVVKG 43 D LLSA L K+Y V V+KG Sbjct: 393 DRLLSARRLVKRYGGVVVLKG 413 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 26.2 bits (59), Expect = 8.3 Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 231 IHAGGVLAHGTVQEIIDNQD 250 +H G V+A GT +EI+ N + Sbjct: 569 VHGGEVVASGTPEEIMKNPN 588 >gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. Length = 771 Score = 26.3 bits (58), Expect = 8.6 Identities = 10/30 (33%), Positives = 18/30 (60%) Query: 121 ILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150 ++ L EK+ ++++E L+ LLKE K Sbjct: 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLK 545 >gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 Score = 26.2 bits (57), Expect = 8.7 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 4/22 (18%) Query: 56 LLGPNGAGKTTFF----YMMTG 73 L+GPNGAGKTT Y+ TG Sbjct: 33 LVGPNGAGKTTIIECLKYICTG 54 >gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional. Length = 767 Score = 26.3 bits (58), Expect = 9.0 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 51 GEIVGLLGPNGAGKTT 66 G ++ L+GP G GKTT Sbjct: 185 GGVLALVGPTGVGKTT 200 >gnl|CDD|179166 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated. Length = 513 Score = 26.2 bits (59), Expect = 9.1 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%) Query: 231 IHAGGVLAHGTVQEIIDNQDV----RRLYLG 257 IH GVL + EI+ + V RL LG Sbjct: 299 IHQDGVLKNRETYEIMTPESVGLKANRLVLG 329 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.322 0.141 0.406 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,428,543 Number of extensions: 294254 Number of successful extensions: 1470 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1204 Number of HSP's successfully gapped: 343 Length of query: 262 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 170 Effective length of database: 4,006,537 Effective search space: 681111290 Effective search space used: 681111290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 56 (25.5 bits)