RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
         (262 letters)



>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
           protein; Provisional.
          Length = 241

 Score =  264 bits (676), Expect = 2e-71
 Identities = 122/238 (51%), Positives = 173/238 (72%), Gaps = 1/238 (0%)

Query: 24  SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
           + L+A +L K Y    VV+ V L V  GEIVGLLGPNGAGKTT FYM+ G++  D+G+I 
Sbjct: 2   ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61

Query: 84  IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSL 142
           ID  DI+ +P++ RAR GI YLPQEASIFR L+V +N++AVL++ +    ++R ++ + L
Sbjct: 62  IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121

Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
           ++EF+I   R  +   LSGG+RRR+EIAR+L + P +ILLDEPFAGVDP+++ DI  +I 
Sbjct: 122 MEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181

Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGDRF 260
            L   G+G+LITDHNV E L + +RAYI+  G ++AHGT  EI+ ++ V+R+YLG+ F
Sbjct: 182 HLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDF 239


>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
           protein UrtE.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 230

 Score =  176 bits (448), Expect = 6e-45
 Identities = 91/219 (41%), Positives = 127/219 (57%), Gaps = 10/219 (4%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           +++GV L V  GE+  +LG NG GKTT    + GL+   SGSI++DG DITK+P + RAR
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74

Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL---LKEFNITKWRHVLA 156
            GI+Y+PQ   IF  LTVEEN+L  L    +  +K  +++  L   LKE           
Sbjct: 75  AGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM-----LGRRG 129

Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITD 215
             LSGGQ+++L IAR+LV+ P  +LLDEP  G+ P  I DI  +IR L +  G+ IL+ +
Sbjct: 130 GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE 189

Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254
             +     L DR Y++  G V+A G   E +D   VRR 
Sbjct: 190 QYLDFARELADRYYVMERGRVVASGAGDE-LDEDKVRRY 227


>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
           ATP-binding subunit.  This model describes daunorubicin
           resistance ABC transporter, ATP binding subunit in
           bacteria and archaea. This model is restricted in its
           scope to preferentially recognize the ATP binding
           subunit associated with effux of the drug, daunorubicin.
           This transport system belong to the larger ATP-Binding
           Cassette (ABC) transporter superfamily. The
           characteristic feature of these transporter is the
           obligatory coupling of ATP hydrolysis to substrate
           translocation. The minimal configuration of bacterial
           ABC transport system: an ATPase or ATP binding subunit;
           An integral membrane protein; a hydrophilic polypetpide,
           which likely functions as substrate binding protein. In
           eukaryotes proteins of similar function include p-gyco
           proteins, multidrug resistance protein etc.
          Length = 302

 Score =  167 bits (426), Expect = 2e-42
 Identities = 83/213 (38%), Positives = 116/213 (54%), Gaps = 2/213 (0%)

Query: 33  KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
           K Y     V GV+  V+ GE+ G LGPNGAGKTT   M+T L+   SG+ ++ G D+ + 
Sbjct: 1   KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60

Query: 93  PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
           P   R  +GI  +PQ AS+   LT  EN+  +  +Y   K +  E+ + LL+ F + +  
Sbjct: 61  PRKVRRSIGI--VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118

Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
                  SGG RRRL+IA SL+  P  + LDEP  G+DP     I   IR L   G+ IL
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178

Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           +T H + E   L DR  II  G ++A GT +E+
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211


>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 255

 Score =  148 bits (377), Expect = 9e-37
 Identities = 86/250 (34%), Positives = 138/250 (55%), Gaps = 16/250 (6%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           LLS   L  ++  +  V  V+L V+  EIV L+GPNGAGKTT F  +TG      G+I +
Sbjct: 5   LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64

Query: 85  DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD------------K 132
            G  I  +P ++ AR+G+    Q   +FR +TV EN+L       K             +
Sbjct: 65  RGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFR 124

Query: 133 KKRHEKLDSL---LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
           +   E LD     L+   + +  +  A  L+ GQ+RRLEIAR +V+ P  ++LDEP AG+
Sbjct: 125 RAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184

Query: 190 DPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           +P    ++  LI +L +   + +L+ +H++  ++ + DR Y+++ G  LA+GT +EI +N
Sbjct: 185 NPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNN 244

Query: 249 QDVRRLYLGD 258
            DV + YLG+
Sbjct: 245 PDVIKAYLGE 254


>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
           PQQ-dependent alcohol dehydrogenase system.  Members of
           this protein family are the ATP-binding subunit of an
           ABC transporter system that is associated with PQQ
           biosynthesis and PQQ-dependent alcohol dehydrogenases.
           While this family shows homology to several efflux ABC
           transporter subunits, the presence of a periplasmic
           substrate-binding protein and association with systems
           for catabolism of alcohols suggests a role in import
           rather than detoxification.
          Length = 236

 Score =  148 bits (376), Expect = 1e-36
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 4/231 (1%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           L    L+  Y +   +  V   V+PGE V LLGPNGAGK+T F ++T L  A  G I + 
Sbjct: 2   LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61

Query: 86  GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
           G+D+ + P    ARLG+ +  Q+ ++   L+V +N+     ++   + +  E++ +LL  
Sbjct: 62  GHDLRRAPRAALARLGVVF--QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLAR 119

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
             + +        L+GG RRR+EIAR+L+  P+ +LLDEP  G+DP + + I   +R L 
Sbjct: 120 LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALC 179

Query: 206 -SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
             +G+ +L   H V EI    DR  ++H G VLA G   E+        L 
Sbjct: 180 RDQGLSVLWATHLVDEI-EADDRLVVLHRGRVLADGAAAELRGALGGADLE 229


>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
           protein UrtD.  Members of this protein family are ABC
           transporter ATP-binding subunits associated with urea
           transport and metabolism. This protein is found in a
           conserved five-gene transport operon typically found
           adjacent to urease genes. It was shown in Cyanobacteria
           that disruption leads to the loss of high-affinity urea
           transport activity.
          Length = 242

 Score =  148 bits (375), Expect = 2e-36
 Identities = 77/246 (31%), Positives = 130/246 (52%), Gaps = 17/246 (6%)

Query: 24  SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
            +L    L+  ++    +  + LYV PGE+  ++GPNGAGKTT   ++TG    D GS+ 
Sbjct: 1   PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60

Query: 84  IDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEV-YEKDK--------KK 134
             G D+T +P ++ AR GI    Q+ ++F  LTV EN    LE+   +DK        + 
Sbjct: 61  FGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFEN----LELALPRDKSVFASLFFRL 116

Query: 135 RHE---KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
             E   +++ +L+   +      LA LLS GQ++ LEI   L+  P  +LLDEP AG+  
Sbjct: 117 SAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTD 176

Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
                   L++ LA     +++ +H++  + ++ D+  ++H G VLA G++ ++  +  V
Sbjct: 177 EETEKTAELLKSLA-GKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADPRV 235

Query: 252 RRLYLG 257
             +YLG
Sbjct: 236 IEVYLG 241


>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
           subunit; Provisional.
          Length = 237

 Score =  138 bits (349), Expect = 1e-33
 Identities = 77/234 (32%), Positives = 126/234 (53%), Gaps = 3/234 (1%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           +LS   ++  Y  +  +  V L++  GEIV L+G NGAGKTT    + G   A SG I  
Sbjct: 5   MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64

Query: 85  DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
           DG DIT     +  R  ++ +P+   +F  +TVEEN+   +  +  ++ +  E++  + +
Sbjct: 65  DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL--AMGGFFAERDQFQERIKWVYE 122

Query: 145 EF-NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
            F  + + R   A  +SGG+++ L I R+L+S P  +LLDEP  G+ P+ I  I   I  
Sbjct: 123 LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ 182

Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
           L  +G+ I + + N ++ L L DR Y++  G V+   T   ++ N+ VR  YLG
Sbjct: 183 LREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEAVRSAYLG 236


>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
           protein LsrA; Provisional.
          Length = 510

 Score =  136 bits (345), Expect = 5e-33
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 4/234 (1%)

Query: 16  QENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI 75
           Q +  +   LL A S++K+Y+ V V+KG+D  +  GE+  LLG NGAGK+T   ++ G++
Sbjct: 2   QTSDTTAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61

Query: 76  CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135
             DSG+++I GN   ++   +  +LGI  +PQE  +F  L+V+ENIL  L   +   +  
Sbjct: 62  PPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQ-- 119

Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
             K+  LL            A  L    R+ +EI R L+     ++LDEP A + P    
Sbjct: 120 --KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177

Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
            +   IR+L ++G+GI+   H + EI  L DR  ++  G +   G   ++  + 
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231



 Score =  102 bits (257), Expect = 8e-23
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 10/223 (4%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
           + L V+ GEI+GL G  GAG+T     + GL  A  G I ++G +I  +   +R   G+ 
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341

Query: 104 YLP---QEASIFRGLTVEENILAVLE---VYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
           YLP   Q + ++    +  N+ A+      +     + +  L+   +  NI K+ H    
Sbjct: 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-KFNHAEQA 400

Query: 158 L--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
              LSGG ++++ IA+ L + P  +++DEP  GVD  A +DI+ LIR +A++ + +L   
Sbjct: 401 ARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFIS 460

Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLGD 258
            ++ EI  + DR  ++H  G ++       I+   + RL  G+
Sbjct: 461 SDLEEIEQMADRVLVMH-QGEISGALTGAAINVDTIMRLAFGE 502


>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
           
          Length = 237

 Score =  133 bits (337), Expect = 4e-32
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           ++K++ S   +  V+L V  G +V LLGP+G+GK+T   ++ GL   DSG I+++G D T
Sbjct: 6   ISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDAT 65

Query: 91  KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
           ++    R    I ++ Q  ++F+ LTV +NI   LE+ +  K K   +++ LL+   +  
Sbjct: 66  RVHARDR---KIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG 122

Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GI 209
                   LSGGQR+R+ +AR+L   P  +LLDEPF  +D     ++   +R L     +
Sbjct: 123 LGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHV 182

Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
             +   H+  E + + DR  ++  G +   G+  E+ D+
Sbjct: 183 TTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221


>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
           Provisional.
          Length = 340

 Score =  133 bits (335), Expect = 6e-32
 Identities = 83/235 (35%), Positives = 120/235 (51%), Gaps = 11/235 (4%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
            ++K Y    VV G+   V  GE  GLLGPNGAGK+T   M+ G+   D+G I + G   
Sbjct: 46  GVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLG--- 102

Query: 90  TKMPMYRRARL---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
             +P+  RARL    I  +PQ  ++    TV EN+L     +    ++    + SLL+  
Sbjct: 103 --VPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA 160

Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
            +          LSGG +RRL +AR+L++ P  ++LDEP  G+DP A   I   +R L +
Sbjct: 161 RLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 220

Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGD 258
           RG  IL+T H + E   L DR  ++ AG  +A G    +ID      V  +Y GD
Sbjct: 221 RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGD 275


>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
          Length = 306

 Score =  131 bits (332), Expect = 1e-31
 Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 5/234 (2%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           + K+Y    VV G+  +V+ GE  GLLGPNGAGKTT   M+ GL   D+GSI + G  + 
Sbjct: 13  VEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72

Query: 91  KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
               + R R+G+  +PQ  ++    TV EN+L     +          +  LL+   +  
Sbjct: 73  SRARHARQRVGV--VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130

Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
                   LSGG +RRL +AR+LV+ P  ++LDEP  G+DP A   +   +R L +RG  
Sbjct: 131 KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKT 190

Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGDRFA 261
           IL+T H + E   L DR  +I  G  +A G    +I+++   DV  +Y  D  A
Sbjct: 191 ILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVA 244


>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
           transporter ATP-binding subunit GldA.  Members of this
           protein family are exclusive to the Bacteroidetes phylum
           (previously Cytophaga-Flavobacteria-Bacteroides). GldA
           is an ABC transporter ATP-binding protein (pfam00005)
           linked to a type of rapid surface gliding motility found
           in certain Bacteroidetes, such as Flavobacterium
           johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
           abolish the gliding phenotype. Gliding motility appears
           closely linked to chitin utilization in the model
           species Flavobacterium johnsoniae. Bacteroidetes with
           members of this protein family appear to have all of the
           genes associated with gliding motility.
          Length = 301

 Score =  127 bits (322), Expect = 2e-30
 Identities = 65/216 (30%), Positives = 118/216 (54%), Gaps = 3/216 (1%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           SLTK Y +   +  V    + G IVG LGPNGAGK+T   ++TG +  DSGS+++ G D+
Sbjct: 7   SLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66

Query: 90  TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
            + P     +  I YLP+   ++  + V E +  +  +Y    +   ++++ +++   + 
Sbjct: 67  LQNPK--EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR 124

Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
             +H     LS G R+R+ +A++L+  P  ++LDEP  G+DP  + +I  +I+++     
Sbjct: 125 PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184

Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
            IL T H + E+  + DR  II+ G ++A   + E+
Sbjct: 185 IILST-HIMQEVEAICDRVIIINKGKIVADKKLDEL 219


>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
           subunit.  This model describes the glycine
           betaine/L-proline ATP binding subunit in bacteria and
           its equivalents in archaea. This transport system belong
           to the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Functionally, this transport system is involved
           in osmoregulation. Under conditions of stress, the
           organism recruits these transport system to accumulate
           glycine betaine and other solutes which offer
           osmo-protection. It has been demonstrated that glycine
           betaine uptake is accompanied by symport with sodium
           ions. The locus has been named variously as proU or
           opuA. A gene library from L.lactis functionally
           complements an E.coli proU mutant. The comlementing
           locus is similar to a opuA locus in B.sutlis. This
           clarifies the differences in nomenclature.
          Length = 363

 Score =  127 bits (320), Expect = 4e-30
 Identities = 67/220 (30%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 33  KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
           KK      V   DL +  GEI  ++G +G+GK+T   M+  LI   +G I IDG +I K 
Sbjct: 1   KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60

Query: 93  P---MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
               +    R  I  + Q+ ++F  +T+ +N     E+    +++R EK   LLK   + 
Sbjct: 61  SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120

Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRG 208
           ++ H     LSGG ++R+ +AR+L + P  +L+DE F+ +DP+    +   ++ L A+  
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180

Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
             I+   H++ E + + DR  I+ AG ++  GT  EI+ N
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220


>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
           protein NodI.  This model does not recognize the highly
           divergent NodI from Azorhizobium caulinodans.
          Length = 303

 Score =  123 bits (310), Expect = 4e-29
 Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           ++K Y    VV  +   +  GE  GLLGPNGAGK+T   M+ G+I  D G I + G  + 
Sbjct: 10  VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69

Query: 91  KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
                 R  +G+  +PQ  ++    TV EN+L     +    ++    + SLL+   +  
Sbjct: 70  SRARLARVAIGV--VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 127

Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
              V   LLSGG +RRL +AR+L++ P  ++LDEP  G+DP A   I   +R L +RG  
Sbjct: 128 KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187

Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ---DVRRLYLGD 258
           IL+T H + E   L DR  ++ +G  +A G    +ID Q   +V  +Y GD
Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGD 238


>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
           ATP-binding component PhnT.  This ATP-binding component
           of an ABC transport system is found in Salmonella and
           Burkholderia lineages in the vicinity of enzymes for the
           breakdown of 2-aminoethylphosphonate.
          Length = 362

 Score =  122 bits (307), Expect = 9e-29
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 11/224 (4%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGN 87
            L   Y +  V+  + L ++ GE++ L+G +G GKTT    + G + A   +G I I   
Sbjct: 10  HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADR 69

Query: 88  DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147
           D+T  P ++R   G++ L Q  ++F  L VE+N+   L   +  K    E++   LK   
Sbjct: 70  DLTHAPPHKR---GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVG 126

Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP----VAISDIHVLIRD 203
           +      L   LSGG ++R+ IAR++   P  +LLDEP + +D         +I  L  +
Sbjct: 127 LGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEE 186

Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
           L    + IL   H+  + LTL D+A I+  G + AHG  Q + D
Sbjct: 187 LPE--LTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228


>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
           protein.  Phosphonates are a class of
           phosphorus-containing organic compound with a stable
           direct C-P bond rather than a C-O-P linkage. A number of
           bacterial species have operons, typically about 14 genes
           in size, with genes for ATP-dependent transport of
           phosphonates, degradation, and regulation of the
           expression of the system. Members of this protein family
           are the ATP-binding cassette component of tripartite ABC
           transporters of phosphonates.
          Length = 243

 Score =  122 bits (308), Expect = 9e-29
 Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%)

Query: 31  LTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           L+K Y +    +K ++L + PGE V ++GP+GAGK+T    +  L+   SGSI ++G DI
Sbjct: 7   LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI 66

Query: 90  TKM--PMYRRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKDKKKRH 136
           TK+     R+ R  I  + Q  ++   LTV EN+L           ++L  + ++ K+R 
Sbjct: 67  TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERA 126

Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
               S L+   +    +  A  LSGGQ++R+ IAR+L   P  IL DEP A +DP     
Sbjct: 127 L---SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183

Query: 197 IHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
           +   ++ +    GI ++I  H V       DR   + AG ++  G   E +D++ +R +Y
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE-LDDEVLRHIY 242


>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
           ATP-binding protein.  This ABC transporter ATP-binding
           protein is found in a number of genomes in operon-like
           contexts strongly suggesting a substrate specificity for
           2-aminoethylphosphonate (2-AEP). The characterized
           PhnSTUV system is absent in the genomes in which this
           system is found. These genomes encode systems for the
           catabolism of 2-AEP, making the need for a
           2-AEP-specific transporter likely.
          Length = 353

 Score =  122 bits (307), Expect = 1e-28
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           LS  ++ K++ +   +K + L VK GE V LLGP+G GKTT   ++ GL    +G+I   
Sbjct: 5   LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64

Query: 86  GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
           G DIT++P  +R   GI +  Q  ++F  LTV +NI   L+     + +  E++  LL  
Sbjct: 65  GRDITRLPPQKRD-YGIVF--QSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDL 121

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
             +          LSGGQ++R+ +AR+L + P  +LLDEP + +D      +   IR L 
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181

Query: 206 SR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
            R G+  ++  H+  E L++ DR  +++ G +   GT QEI  +
Sbjct: 182 RRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225


>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
           ABC transporter, ATP-binding subunit.  Model TIGR03731
           represents the family of all lantibiotics related to
           gallidermin, including epidermin, mutatin, and nisin.
           This protein family describes the ATP-binding subunit of
           a gallidermin/epidermin class lantibiotic protection
           transporter. It is largely restricted to
           gallidermin-family lantibiotic biosynthesis and export
           cassettes, but also occurs in orphan transporter
           cassettes in species that lack candidate lantibiotic
           precursor and synthetase genes.
          Length = 223

 Score =  120 bits (304), Expect = 2e-28
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 12/225 (5%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           L+K++     V  + L V    + GLLGPNGAGK+T   M+TG++   SG I  DG+   
Sbjct: 6   LSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH--- 62

Query: 91  KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
             P  R+    I  L +   ++  LT  EN+     +          ++D +L   ++T 
Sbjct: 63  --PWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPD----SRIDEVLNIVDLTN 116

Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
                A   S G ++RL IA +L++ P  ++LDEP  G+DP+ I ++  LIR    +GI 
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176

Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
           ++++ H + E+  L D   II   GVL  G   +I  ++++ +L+
Sbjct: 177 VILSSHILSEVQQLADHIGIIS-EGVL--GYQGKINKSENLEKLF 218


>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 275

 Score =  120 bits (303), Expect = 4e-28
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 11/236 (4%)

Query: 25  LLSACSLTKKYNSVYVV-KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
           +L    L   Y       KG++   + GE+V LLGPNGAGK+T F    G++   SG + 
Sbjct: 1   ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60

Query: 84  IDGNDIT---KMPMYRRARLGISYLPQEASIFRGLTVEENIL---AVLEVYEKDKKKRHE 137
           I G  I    K  +  R  +GI +   +  +F   TVEE++      L + +++ +KR  
Sbjct: 61  IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKR-- 117

Query: 138 KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
            +   LK   +  + +     LSGGQ++R+ IA  L   P  I+LDEP +G+DP+  S I
Sbjct: 118 -VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQI 176

Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
             L+ DL   GI I+I+ H+V  +    D+ Y++  G ++  GT +E+  + +  R
Sbjct: 177 MKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232


>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
           YrbF; Provisional.
          Length = 269

 Score =  116 bits (291), Expect = 7e-27
 Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 20/221 (9%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR--RARLG 101
           + L V  G+I  ++GP+G GKTT   ++ G I  D G I  DG +I  M   R    R  
Sbjct: 26  ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85

Query: 102 ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL-DSLLKEFNITKWRHV------ 154
           +S L Q  ++F  + V +N+   L        + H +L   LL    + K   V      
Sbjct: 86  MSMLFQSGALFTDMNVFDNVAYPL--------REHTQLPAPLLHSTVMMKLEAVGLRGAA 137

Query: 155 -LAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211
            L P  LSGG  RR  +AR++   P  I+ DEPF G DP+ +  +  LI +L S  G+  
Sbjct: 138 KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTC 197

Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
           ++  H+V E+L++ D AYI+    ++AHG+ Q +  N D R
Sbjct: 198 VVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPR 238


>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
           This model describes the energy-transducing ATPase
           subunit ThiQ of the ThiBPQ thiamine (and thiamine
           pyrophosphate) ABC transporter in several
           Proteobacteria. This protein is found so far only in
           Proteobacteria, and is found in complete genomes only if
           the ThiB and ThiP subunits are also found.
          Length = 213

 Score =  115 bits (290), Expect = 1e-26
 Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 4/193 (2%)

Query: 45  DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
           DL V  GEIV ++GP+GAGK+T   ++ G I   SGSIK++    T +  Y+R    +S 
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRP---VSM 74

Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164
           L QE ++F  LTV +NI   L    K   ++ EK+    ++  I  +   L   LSGGQR
Sbjct: 75  LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQR 134

Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIGILITDHNVHEILT 223
           +R+ +AR LV     +LLDEPF+ +DP+   ++  L++ L S R   +L+  H++ +   
Sbjct: 135 QRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARA 194

Query: 224 LIDRAYIIHAGGV 236
           +  +  ++  G +
Sbjct: 195 IASQIAVVSQGKI 207


>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
           ATP-binding protein.  This small clade of ABC-type
           transporter ATP-binding protein components is found as a
           three gene cassette along with a periplasmic
           substrate-binding protein (TIGR03868) and a permease
           (TIGR03869). The organisms containing this cassette are
           all Actinobacteria and all contain numerous genes
           requiring the coenzyme F420. This model was defined
           based on five such organisms, four of which are lacking
           all F420 biosynthetic capability save the final
           side-chain polyglutamate attachment step (via the gene
           cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
           marine actinobacterium PHSC20C1 this cassette is in an
           apparent operon with the cofE gene and, in PHSC20C1,
           also with a F420-dependent glucose-6-phosphate
           dehydrogenase (TIGR03554). Based on these observations
           we propose that this ATP-binding protein is a component
           of an F420-0 (that is, F420 lacking only the
           polyglutamate tail) transporter.
          Length = 256

 Score =  113 bits (285), Expect = 4e-26
 Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 5/234 (2%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           L    ++       +V GVD+   PG + GLLGPNG+GK+T   ++ G +  D+G++ + 
Sbjct: 2   LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61

Query: 86  GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKLDS 141
           G D+  +    RAR  ++ + Q++     LTV + +         ++  D       +D 
Sbjct: 62  GVDLHGLSRRARARR-VALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120

Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
            L    ++         LSGG+R+R+ +AR+L   P  +LLDEP   +D  A  +   L+
Sbjct: 121 ALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV 180

Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
           R+LA+ G+ ++   H+++   +  D   ++  G V+A G  +E++    +R +Y
Sbjct: 181 RELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVY 234


>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
           Provisional.
          Length = 510

 Score =  113 bits (285), Expect = 4e-26
 Identities = 68/240 (28%), Positives = 116/240 (48%), Gaps = 8/240 (3%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
            +S   + K +  V+ +K V+L V PGEI  LLG NGAGK+T   +++G+     G+I I
Sbjct: 5   YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64

Query: 85  DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL-------AVLEVYEKDKKKRHE 137
           +  +  K+     A+LGI  + QE S+   LTV EN+         V  V   D ++   
Sbjct: 65  NNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV 124

Query: 138 KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
           +   +L    +          LS   ++ LEIA++L+     I++DEP + +    +  +
Sbjct: 125 RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184

Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
            +++  L   G  I+   H + EI  + DR  ++  G  +  G V + + N D+ RL +G
Sbjct: 185 FLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD-VSNDDIVRLMVG 243



 Score = 82.9 bits (205), Expect = 8e-17
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 37/232 (15%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
           V+ +   V  GEI+G  G  G+G+T     + G+     G I+++G DI+        + 
Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338

Query: 101 GISYLPQ---EASIFRGLTVEENILAVLE-------------VYEKDKKKRHEKLDSLLK 144
           G++Y+ +   +   F   ++ +N+ A+                +E D+++  E    LL 
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNM-AISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397

Query: 145 ------EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
                   NIT+        LSGG ++++ I++ L   P  I+ DEP  G+D  A ++I+
Sbjct: 398 LKCHSVNQNITE--------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIY 449

Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
            ++R LA  G  IL+    + EI+T+ DR  I     V   G + +I+ N+D
Sbjct: 450 KVMRQLADDGKVILMVSSELPEIITVCDR--IA----VFCEGRLTQILTNRD 495


>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
           ATP-binding subunit.  This protein family is the
           ATP-binding cassette subunit of binding
           protein-dependent ABC transporter complex that strictly
           co-occurs with TIGR03769. TIGRFAMs model TIGR03769
           describes a protein domain that occurs singly or as one
           of up to three repeats in proteins of a number of
           Actinobacteria, including Propionibacterium acnes
           KPA171202. The TIGR03769 domain occurs both in an
           adjacent gene for the substrate-binding protein and in
           additional (often nearby) proteins, often with
           LPXTG-like sortase recognition signals. Homologous
           ATP-binding subunits outside the scope of this family
           include manganese transporter MntA in Synechocystis sp.
           PCC 6803 and chelated iron transporter subunits. The
           function of this transporter complex is unknown.
          Length = 223

 Score =  113 bits (284), Expect = 5e-26
 Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 13/210 (6%)

Query: 46  LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYL 105
           L    GE++GLLGPNGAGKTT    + GLI    G++K+ G          +    I Y+
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS------PGKGWRHIGYV 54

Query: 106 PQ--EASIFRGLTVEENILA----VLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159
           PQ  E +    ++V   +++     +    +        +   L+   +T+        L
Sbjct: 55  PQRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGEL 114

Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
           SGGQR+R+ +AR+L + PS +LLDEPF G+D      +  L  +LA  G  IL+T H++ 
Sbjct: 115 SGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLA 174

Query: 220 EILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
           + +   DR  +++ G V+A GT Q++ D  
Sbjct: 175 QAMATCDRVVLLN-GRVIADGTPQQLQDPA 203


>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
           Provisional.
          Length = 232

 Score =  111 bits (281), Expect = 1e-25
 Identities = 68/204 (33%), Positives = 110/204 (53%), Gaps = 4/204 (1%)

Query: 45  DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
           DL V+ GE V +LGP+GAGK+T   ++ G +   SGS+ ++G D T  P  RR    +S 
Sbjct: 19  DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP---VSM 75

Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164
           L QE ++F  LTV +NI   L    K    + EKL ++ ++  I      L   LSGGQR
Sbjct: 76  LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQR 135

Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILITDHNVHEILT 223
           +R+ +AR LV     +LLDEPF+ +DP    ++  L+  +   R + +L+  H++ +   
Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAAR 195

Query: 224 LIDRAYIIHAGGVLAHGTVQEIID 247
           +  R+ ++  G +   G   E++ 
Sbjct: 196 IAPRSLVVADGRIAWDGPTDELLS 219


>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 258

 Score =  110 bits (277), Expect = 4e-25
 Identities = 72/245 (29%), Positives = 127/245 (51%), Gaps = 22/245 (8%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           +L A +L+ +     ++  V L ++PGE+V +LGPNGAGK+T    ++G +  DSG +++
Sbjct: 2   MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61

Query: 85  DGNDITKMPMYRRA-RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
           +G  +        A R  +  LPQ +S+    TVEE +      +   + +    + + L
Sbjct: 62  NGRPLADWSPAELARRRAV--LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119

Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLV------SFPSYILLDEPFAGVDPVAISDI 197
            + ++        P LSGG+++R+++AR L         P ++LLDEP + +D       
Sbjct: 120 AQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLA--HQH 177

Query: 198 HVL--IRDLA-SRGIGILITDHNVHEILTLI----DRAYIIHAGGVLAHGTVQEIIDNQD 250
           HVL   R LA  RG+ +++  H+    L L     DR  ++H G ++A GT  E++  + 
Sbjct: 178 HVLRLARQLAHERGLAVIVVLHD----LNLAARYADRIVLLHQGRLVADGTPAEVLTPET 233

Query: 251 VRRLY 255
           +RR+Y
Sbjct: 234 LRRVY 238


>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
           Provisional.
          Length = 377

 Score =  109 bits (275), Expect = 6e-25
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 10/232 (4%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           LL   +LTK ++  + V  V L +  GEI  LLG +G GK+T   M+ G     +G I +
Sbjct: 19  LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78

Query: 85  DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE---KLDS 141
           DG D++ +P Y+R    I+ + Q  ++F  +TVE+NI   L   ++DK  + E   +++ 
Sbjct: 79  DGVDLSHVPPYQRP---INMMFQSYALFPHMTVEQNIAFGL---KQDKLPKAEIASRVNE 132

Query: 142 LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
           +L   ++ ++       LSGGQR+R+ +ARSL   P  +LLDEP   +D      + + +
Sbjct: 133 MLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192

Query: 202 RDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
            D+  R G+  ++  H+  E +T+  R  I++ G  +  G  +EI ++   R
Sbjct: 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTR 244


>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE.  This
           model describes FtsE, a member of the ABC transporter
           ATP-binding protein family. This protein, and its
           permease partner FtsX, localize to the division site. In
           a number of species, the ftsEX gene pair is located next
           to FtsY, the signal recognition particle-docking
           protein.
          Length = 214

 Score =  108 bits (271), Expect = 2e-24
 Identities = 61/211 (28%), Positives = 112/211 (53%), Gaps = 9/211 (4%)

Query: 31  LTKKYN-SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           ++K Y   V  +  V L+++ GE + L GP+GAGKTT   ++ G +    G ++I G D+
Sbjct: 7   VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDV 66

Query: 90  TKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
            ++     P+ RR R+G+ +  Q+  +    TV EN+   LEV  K +++   ++ + L+
Sbjct: 67  NRLRGRQLPLLRR-RIGVVF--QDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALR 123

Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
           +  +          LSGG+++R+ IAR++V+ P  +L DEP   +DP     I  L++ L
Sbjct: 124 QVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRL 183

Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGG 235
             RG  +++  H++  +  +  R  I+  G 
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214


>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
           transporter, PrtD family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 544

 Score =  108 bits (271), Expect = 2e-24
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 22/220 (10%)

Query: 39  YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
             ++G+   ++ GE + ++GP+G+GK+T   ++ G+    SGS+++DG D+ +   + R 
Sbjct: 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ---WDRE 388

Query: 99  RLG--ISYLPQEASIFRGLTVEENILAVLEVYEKDK-------KKRHEKLDSLLKEFNIT 149
             G  I YLPQ+  +F G TV ENI    E  + +K          HE +  L   ++  
Sbjct: 389 TFGKHIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDT- 446

Query: 150 KWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
               V+ P    LSGGQR+R+ +AR+L   P  ++LDEP + +D      +   I+ L +
Sbjct: 447 ----VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA 502

Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
           RGI +++  H    +L  +D+  ++  G +   G   E++
Sbjct: 503 RGITVVVITHRP-SLLGCVDKILVLQDGRIARFGERDEVL 541


>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
           subunit.  This model describes spermidine/putrescine ABC
           transporter, ATP binding subunit in bacteria and its
           equivalents in archaea. This transport system belong to
           the larger ATP-Binding Cassette (ABC) transporter
           superfamily. The characteristic feature of these
           transporter is the obligatory coupling of ATP hydrolysis
           to substrate translocation. The minimal configuration of
           bacterial ABC transport system: an ATPase or ATP binding
           subunit; An integral membrane protein; a hydrophilic
           polypetpide, which likely functions as substrate binding
           protein. Polyamines like spermidine and putrescine play
           vital role in cell proliferation, differentiation, and
           ion homeostasis. The concentration of polyamines within
           the cell are regulated by biosynthesis, degradation and
           transport (uptake and efflux included).
          Length = 325

 Score =  107 bits (270), Expect = 2e-24
 Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 4/191 (2%)

Query: 56  LLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGL 115
           LLGP+G GKTT   ++ G    DSGSI +DG D+T +P + R    I+ + Q  ++F  +
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLR---HINMVFQSYALFPHM 57

Query: 116 TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVS 175
           TVEEN+   L++ +  + +   ++   L+   + ++       LSGGQ++R+ +AR+LV 
Sbjct: 58  TVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVF 117

Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAG 234
            P  +LLDEP + +D      + + ++ +  + GI  +   H+  E +T+ DR  I+  G
Sbjct: 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKG 177

Query: 235 GVLAHGTVQEI 245
            +   GT +EI
Sbjct: 178 KIAQIGTPEEI 188


>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
           family.  Members of this protein family are found mostly
           in the Cyanobacteria, but also in the Planctomycetes.
           Cyanobacterial examples are involved in heterocyst
           formation, by which some fraction of members of the
           colony undergo a developmental change and become capable
           of nitrogen fixation. The DevBCA proteins are thought
           export of either heterocyst-specific glycolipids or an
           enzyme essential for formation of the laminated layer
           found in heterocysts.
          Length = 220

 Score =  107 bits (268), Expect = 4e-24
 Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 7/197 (3%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRR-- 97
           V+  ++L + PGEIV L GP+G+GKTT   ++ GL     GS+K+ G ++          
Sbjct: 20  VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 98  ARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKEFNITKWRHVLA 156
            R  I Y+ Q  ++   LT  +N+   LE+      ++  E+  ++L+   +        
Sbjct: 80  LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139

Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITD 215
             LSGGQ++R+ IAR+LV  P  +L DEP A +D  +  D+  L++ LA  +G  ILI  
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199

Query: 216 HNVHEILTLIDRAYIIH 232
           H+ + IL + DR  I+H
Sbjct: 200 HD-NRILDVADR--IVH 213


>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
           protein.  Members of this family are the ATP-binding
           protein of the D-methionine ABC transporter complex.
           Known members belong to the Proteobacteria.
          Length = 343

 Score =  106 bits (267), Expect = 4e-24
 Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 3/215 (1%)

Query: 37  SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM--PM 94
           ++  +  V L+V  G+I G++G +GAGK+T    +  L    SGS+ +DG D+T +    
Sbjct: 17  TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76

Query: 95  YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154
             +AR  I  + Q  ++    TV  N+   LE+    K +   K+  LL    +      
Sbjct: 77  LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDS 136

Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILI 213
               LSGGQ++R+ IAR+L S P  +L DE  + +DP     I  L++++  R G+ IL+
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196

Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
             H +  +  + D   +I  G ++  GTV EI  +
Sbjct: 197 ITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231


>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score =  105 bits (263), Expect = 1e-23
 Identities = 64/232 (27%), Positives = 116/232 (50%), Gaps = 4/232 (1%)

Query: 25  LLSACSLTKKYN-SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
           L+    L   Y+ S   +  ++        + ++GPNGAGK+T F    G++   SGS+ 
Sbjct: 3   LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62

Query: 84  IDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
           I G  ITK  +   R  +G+ +   +  IF   TVE++I         D++    ++ S 
Sbjct: 63  IRGEPITKENIREVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSA 121

Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
           L    + + R  +   LSGG+++R+ IA  +   P  ++LDEP AG+DP  + ++   + 
Sbjct: 122 LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181

Query: 203 DLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
           DL    G+ ++ + H +  +  + D  Y++  G ++A+GTV+EI    D+  
Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLA 233


>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
           protein; Reviewed.
          Length = 375

 Score =  104 bits (262), Expect = 2e-23
 Identities = 74/245 (30%), Positives = 124/245 (50%), Gaps = 24/245 (9%)

Query: 12  MPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71
             +  +  +S   L+    ++K ++   V+  +DL +  GE + LLGP+G GKTT   ++
Sbjct: 1   SKKLNKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI 60

Query: 72  TGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVY 128
            G    DSG I +DG DIT +P   R    ++ + Q  ++F  +TV EN+   L + +  
Sbjct: 61  AGFETPDSGRIMLDGQDITHVPAENRH---VNTVFQSYALFPHMTVFENVAFGLRMQKTP 117

Query: 129 EKDKKKRHEKLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDE 184
             +   R   +++L    L+EF   K        LSGGQ++R+ IAR++V+ P  +LLDE
Sbjct: 118 AAEITPR--VMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNKPKVLLLDE 170

Query: 185 PFAGVD----PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
             + +D        +++  L R L   GI  +   H+  E LT+ DR  ++  G +   G
Sbjct: 171 SLSALDYKLRKQMQNELKALQRKL---GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227

Query: 241 TVQEI 245
           T +EI
Sbjct: 228 TPREI 232


>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
           family.  Type I protein secretion is a system in some
           Gram-negative bacteria to export proteins (often
           proteases) across both inner and outer membranes to the
           extracellular medium. This is one of three proteins of
           the type I secretion apparatus. Targeted proteins are
           not cleaved at the N-terminus, but rather carry signals
           located toward the extreme C-terminus to direct type I
           secretion. This model is related to models TIGR01842 and
           TIGR01846, and to bacteriocin ABC transporters that
           cleave their substrates during export.
          Length = 694

 Score =  104 bits (261), Expect = 3e-23
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 29/237 (12%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
               S          +  V L ++PGE V ++G  G+GK+T   ++ GL     GS+ +D
Sbjct: 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525

Query: 86  GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENIL---------AVLEVYEK----DK 132
           G DI ++      R  I Y+PQ+  +F G T+ +NI           +L   E     + 
Sbjct: 526 GVDIRQIDPADL-RRNIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEF 583

Query: 133 KKRHEK-LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
            +RH   LD  + E   +         LSGGQR+ + +AR+L+  P  +LLDEP + +D 
Sbjct: 584 VRRHPDGLDMQIGERGRS---------LSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634

Query: 192 VAISD-IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
            +       L R LA + + +L+T H    +L L+DR  ++  G ++A G   ++++
Sbjct: 635 RSEERFKDRLKRWLAGKTL-VLVT-HRTS-LLDLVDRIIVMDNGRIVADGPKDQVLE 688


>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
           protein YecC; Provisional.
          Length = 250

 Score =  104 bits (260), Expect = 3e-23
 Identities = 71/243 (29%), Positives = 124/243 (51%), Gaps = 15/243 (6%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           +L KK++   V+ G+DL VKPGE+V ++GP+G+GKTT    +  L   ++G+I++   DI
Sbjct: 8   NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV--GDI 65

Query: 90  T---------KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140
           T         +  + R+ R  + ++ Q  ++F   TV ENI+    + + + K+      
Sbjct: 66  TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA 125

Query: 141 -SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
             LL +  +          LSGGQ++R+ IAR+L   P  IL DEP + +DP  + ++  
Sbjct: 126 RELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN 185

Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLG 257
            IR LA     ++I  H +     + DRA  +  G ++  G  + +  +  Q   R +L 
Sbjct: 186 TIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFL- 244

Query: 258 DRF 260
           ++F
Sbjct: 245 EKF 247


>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 283

 Score =  103 bits (259), Expect = 4e-23
 Identities = 65/236 (27%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 23  DSLLSACSLTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS 81
           D +L    L   Y +  + +KG+++ +K GE+  +LG NGAGK+T F  + G++   SG 
Sbjct: 3   DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR 62

Query: 82  IKIDGNDI---TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
           I  DG  I    K  M  R  +G+ +   +  +F     ++     + + +  + +  ++
Sbjct: 63  ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKR 121

Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
           +D+ LK   I   +      LS GQ++R+ IA  LV  P  ++LDEP AG+DP+ +S+I 
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181

Query: 199 VLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
            L+ ++    G+ I+I  H++  +    D  +++  G V+  G  +E+   +++ R
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLR 237


>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA.  This
           model describes the cyt c biogenesis protein encoded by
           ccmA in bacteria. An exception is, an arabidopsis
           protein. Quite likely this is encoded by an organelle.
           Bacterial c-type cytocromes are located on the
           periplasmic side of the cytoplasmic membrane. Several
           gene products encoded in a locus designated as 'ccm' are
           implicated in the transport and assembly of the
           functional cytochrome C. This cluster includes genes:
           ccmA;B;C;D;E;F;G and H. The posttranslational pathway
           includes the transport of heme moiety, the secretion of
           the apoprotein and the covalent attachment of the heme
           with the apoprotein. The proteins ccmA and B represent
           an ABC transporter; ccmC and D participate in heme
           transfer to ccmE, which function as a periplasmic heme
           chaperone. The presence of ccmF, G and H is suggested to
           be obligatory for the final functional assembly of
           cytochrome c.
          Length = 198

 Score =  102 bits (256), Expect = 1e-22
 Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           L+A +L        + +G+   +  GE + + GPNG GKTT   ++ GL+  DSG ++ +
Sbjct: 1   LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60

Query: 86  GNDITKM-PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
           G  + +      R    I YL     +   L+  EN    L  +          ++  L 
Sbjct: 61  GTALAEQRDEPHR---NILYLGHLPGLKPELSALEN----LHFWAAIHGGAQRTIEDALA 113

Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
              +T +  + A  LS GQ+RRL +AR  +S     +LDEP   +D   ++ +  L+R  
Sbjct: 114 AVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173

Query: 205 ASRGIGILITDH 216
            +RG  +L+T H
Sbjct: 174 LARGGIVLLTTH 185


>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
           This model describes the ATP binding subunit of the
           multisubunit cobalt transporter in bacteria and its
           equivalents in archaea. The model is restricted to ATP
           subunit that is a part of the cobalt transporter, which
           belongs to the ABC transporter superfamily (ATP Binding
           Cassette). The model excludes ATP binding subunit that
           are associated with other transporters belonging to ABC
           transporter superfamily. This superfamily includes two
           groups, one which catalyze the uptake of small
           molecules, including ions from the external milieu and
           the other group which is engaged in the efflux of small
           molecular weight compounds and ions from within the
           cell. Energy derived from the hydrolysis of ATP drive
           the both the process of uptake and efflux.
          Length = 190

 Score =  101 bits (254), Expect = 2e-22
 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 4/186 (2%)

Query: 36  NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT---KM 92
               V+KG++   + GE++ LLG NGAGK+T    + GL+   SG++ IDG  +    K 
Sbjct: 3   GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62

Query: 93  PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
            + RR R+G+ +   +  +F    V++++          + +   ++   L     +  R
Sbjct: 63  LLERRQRVGLVFQDPDDQLFAA-DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121

Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
                 LSGG+++R+ IA ++   P  +LLDEP AG+DP     +  ++R L + G+ ++
Sbjct: 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVV 181

Query: 213 ITDHNV 218
           I+ H+V
Sbjct: 182 ISTHDV 187


>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding cassette
           (ABC) protein of the three subunit molybdate ABC
           transporter. The three proteins of this complex are
           homologous to proteins of the sulfate ABC transporter.
           Molybdenum may be used in nitrogenases of
           nitrogen-fixing bacteria and in molybdopterin cofactors.
           In some cases, molybdate may be transported by a sulfate
           transporter rather than by a specific molybdate
           transporter.
          Length = 354

 Score =  101 bits (253), Expect = 2e-22
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 18/212 (8%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRR 97
            D  +    +  + G +G+GKTT   ++ GL   D G I ++G    D  K   +P  +R
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75

Query: 98  ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
               I Y+ QEA +F  L+V  N+     +      +R    + +++   I    H+L  
Sbjct: 76  R---IGYVFQEARLFPHLSVRGNL--RYGMKRARPSERRISFERVIELLGIG---HLLGR 127

Query: 158 L---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGILI 213
           L   LSGG+++R+ I R+L+S P  +L+DEP A +D     +I   +  L A  GI IL 
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILY 187

Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
             H++ E+L L DR  ++  G V A G + E+
Sbjct: 188 VSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219


>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score =  101 bits (253), Expect = 2e-22
 Identities = 79/254 (31%), Positives = 127/254 (50%), Gaps = 22/254 (8%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADS 79
           LLSA  +   Y     VK V+L V+ G +  L+GP+G GKTTF   +  +         +
Sbjct: 4   LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63

Query: 80  GSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKR 135
           G I +DG DI      P+  R R+G+ +  Q+ + F  ++V +N++A L++   +D+   
Sbjct: 64  GRILLDGQDIYGPRVDPVAMRRRVGMVF--QKPNPFPTMSVFDNVVAGLKLAGIRDRDHL 121

Query: 136 HEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
            E  +  L+      W  V   L      LSGGQ++RL IAR+L   P  +L+DEP + +
Sbjct: 122 MEVAERSLR--GAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSAL 179

Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN- 248
           DP + + I  L+ DL  +   I+I  HN+H+   + D       G ++ HG   ++  N 
Sbjct: 180 DPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238

Query: 249 QDVR-RLYLGDRFA 261
           +D R   Y+  RF 
Sbjct: 239 RDERTEAYVSGRFG 252


>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit.  The
           gene pair cydCD encodes an ABC-family transporter in
           which each gene contains an N-terminal membrane-spanning
           domain (pfam00664) and a C-terminal ATP-binding domain
           (pfam00005). In E. coli these genes were discovered as
           mutants which caused the terminal heme-copper oxidase
           complex cytochrome bd to fail to assemble. Recent work
           has shown that the transporter is involved in export of
           redox-active thiol compounds such as cysteine and
           glutathione. The linkage to assembly of the cytochrome
           bd complex is further supported by the conserved operon
           structure found outside the gammaproteobacteria
           (cydABCD) containing both the transporter and oxidase
           genes components. The genes used as the seed members for
           this model are all either found in the
           gammproteobacterial context or the CydABCD context. All
           members of this family scoring above trusted at the time
           of its creation were from genomes which encode a
           cytochrome bd complex.
          Length = 529

 Score =  101 bits (253), Expect = 2e-22
 Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 8/182 (4%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           V+ GV L + PGE V +LGP+G+GK+T   ++TGL+    G + +DG  ++ +    R R
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRR 409

Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKK--RHEKLDSLLKEF--NITKWRHV 154
             IS   Q+A +F   TV +N+ L   +  +++         L   L+     +      
Sbjct: 410 --ISVFAQDAHLF-DTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGE 466

Query: 155 LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214
               LSGG+R+RL +AR+L++    +LLDEP   +D    S++   +    S    ++IT
Sbjct: 467 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526

Query: 215 DH 216
            H
Sbjct: 527 HH 528


>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
           protein.  This model represents LolD, a member of the
           ABC transporter family (pfam00005). LolD is involved in
           localization of lipoproteins in some bacteria. It works
           with a transmembrane protein LolC, which in some species
           is a paralogous pair LolC and LolE. Depending on whether
           the residue immediately following the new, modified
           N-terminal Cys residue, the nascent lipoprotein may be
           carried further by LolA and LolB to the outer membrane,
           or remain at the inner membrane. The top scoring
           proteins excluded by this model include homologs from
           the archaeal genus Methanosarcina.
          Length = 221

 Score = 99.7 bits (249), Expect = 7e-22
 Identities = 62/203 (30%), Positives = 102/203 (50%), Gaps = 12/203 (5%)

Query: 25  LLSACSLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
           LL   +L K+Y        V+KGV L +  GEIV ++G +G+GK+T  +++ GL    SG
Sbjct: 1   LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60

Query: 81  SIKIDGNDITKMPMYRRARL-----GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR 135
            +  +G  ++K+    RA+L     G  Y  Q   +    T  EN+   L + +K  K+ 
Sbjct: 61  EVLFNGQSLSKLSSNERAKLRNKKLGFIY--QFHHLLPDFTALENVAMPLLIGKKSVKEA 118

Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
            E+   +L++  +    +     LSGG+R+R+ IAR+LV+ PS +L DEP   +D     
Sbjct: 119 KERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178

Query: 196 DIHVLIRDLAS-RGIGILITDHN 217
            I  L+ +L        L+  H+
Sbjct: 179 IIFDLMLELNRELNTSFLVVTHD 201


>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
           subunit; Provisional.
          Length = 262

 Score = 98.9 bits (246), Expect = 1e-21
 Identities = 71/244 (29%), Positives = 120/244 (49%), Gaps = 23/244 (9%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS---IKIDGN 87
           L K +N    +  VDL +  GE+V LLGP+G+GK+T    ++GLI  D  +   I++ G 
Sbjct: 10  LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69

Query: 88  DITKMPMY----RRARLGISYLPQEASIFRGLTVEENIL-----------AVLEVYEKDK 132
            + +        R++R    Y+ Q+ ++   L+V EN+L                + +++
Sbjct: 70  TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ 129

Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
           K+R  +    L    +  + H     LSGGQ++R+ IAR+L+     IL DEP A +DP 
Sbjct: 130 KQRALQ---ALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186

Query: 193 AISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
           +   +   +RD+  + GI +++T H V   L   +R   +  G V   G+ Q+  DN+  
Sbjct: 187 SARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ-FDNERF 245

Query: 252 RRLY 255
             LY
Sbjct: 246 DHLY 249


>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 98.5 bits (245), Expect = 2e-21
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 10/227 (4%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           +L+   L  +Y    V+KG++L      + GL+G NG GK+T F  ++GL+    G++  
Sbjct: 1   MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60

Query: 85  DGN--DITKMPMYR-RARLGISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEK 138
            G   D +K  +   R ++   +   E  IF    ++ +I   L  L V E +  +R   
Sbjct: 61  QGKPLDYSKRGLLALRQQVATVFQDPEQQIFY-TDIDSDIAFSLRNLGVPEAEITRR--- 116

Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
           +D  L   +   +RH     LS GQ++R+ IA +LV    Y+LLDEP AG+DP   + + 
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176

Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
            +IR + ++G  ++I+ H++  I  + D  Y++  G +L HG   E+
Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223


>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 271

 Score = 98.5 bits (246), Expect = 2e-21
 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 31  LTKKYN--SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
           ++  Y       +K V   +  GE V +LG NG+GK+T   ++TGL+   SG IKIDG  
Sbjct: 13  VSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGIT 72

Query: 89  ITKMPM-YRRARLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
           I+K  +   R ++GI +  Q   + F G TVE++I   LE  +   KK  + +D L K+ 
Sbjct: 73  ISKENLKEIRKKIGIIF--QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV 130

Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
            +  +       LSGGQ++R+ IA  L   P  I+ DE  + +DP    +I  ++ DL  
Sbjct: 131 GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK 190

Query: 207 RGIGILIT-DHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
                LI+  H++ E + L D+  +   G ++A G  +EI++N+++
Sbjct: 191 TRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEI 235


>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
            model describes the photoreceptor protein (rim protein)
            in eukaryotes. It is the member of ABC transporter
            superfamily. Rim protein is a membrane glycoprotein which
            is localized in the photoreceptor outer segment discs.
            Mutation/s in its genetic loci is implicated in the
            recessive Stargardt's disease.
          Length = 2272

 Score = 98.2 bits (244), Expect = 2e-21
 Identities = 64/190 (33%), Positives = 103/190 (54%), Gaps = 3/190 (1%)

Query: 52   EIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI 111
            +I   LG NGAGKTT   ++TGL+   SG++ + G DI       R  LG+   PQ   +
Sbjct: 957  QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC--PQHNIL 1014

Query: 112  FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIAR 171
            F  LTV E+IL   ++  +  ++   +++++L++  +   R+  A  LSGG +R+L +A 
Sbjct: 1015 FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAI 1074

Query: 172  SLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII 231
            + V     ++LDEP +GVDP +   I  L+    S G  I+++ H++ E   L DR  II
Sbjct: 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRS-GRTIIMSTHHMDEADLLGDRIAII 1133

Query: 232  HAGGVLAHGT 241
              G +   GT
Sbjct: 1134 SQGRLYCSGT 1143



 Score = 96.2 bits (239), Expect = 7e-21
 Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%)

Query: 20   ASKDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77
             +K  +L    LTK Y   S   V  + + V+PGE  GLLG NGAGKTT F M+TG    
Sbjct: 1932 GNKTDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV 1991

Query: 78   DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
             SG   + G  I  +         + Y PQ  +I   LT  E+    L +Y + +    E
Sbjct: 1992 TSGDATVAGKSI--LTNISDVHQNMGYCPQFDAIDDLLTGREH----LYLYARLRGVPAE 2045

Query: 138  KLDSL----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
            +++ +    ++   ++ +   LA   SGG +R+L  A +L+  P  +LLDEP  G+DP A
Sbjct: 2046 EIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQA 2105

Query: 194  ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
               +   I  +   G  +++T H++ E   L  R  I+  G     GT+Q +
Sbjct: 2106 RRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157


>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
           Unfortunately, the gene symbol nomenclature adopted
           based on this operon in B. subtilis assigns cydC to the
           third gene in the operon where this gene is actually
           homologous to the E. coli cydD gene. We have chosen to
           name all homologs in this family in accordance with the
           precedence of publication of the E. coli name, CydD.
          Length = 529

 Score = 98.1 bits (245), Expect = 2e-21
 Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 31/208 (14%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
            ++ V   V PGE V L+GP+GAGK+T   ++ G +    GSI ++G  +         R
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW-R 395

Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEK--LDSLLKEFNITKWRHVLA 156
             I+++PQ   +F G T+ ENI LA  +  + + ++  E+  LD  +             
Sbjct: 396 DQIAWVPQHPFLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAA----------L 444

Query: 157 PL------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
           P             LSGGQ +RL +AR+ +     +LLDEP A +D    + +   +R L
Sbjct: 445 PQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRAL 504

Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIH 232
           A     +L+T    H +        I+ 
Sbjct: 505 AQGRTVLLVT----HRLALAERADRIVV 528


>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 96.8 bits (241), Expect = 5e-21
 Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 26/243 (10%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89
           Y S  ++  ++L +   E+   +GP+G GK+TF   F  M   +  C   G + IDG D+
Sbjct: 15  YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74

Query: 90  TKMPM---YRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
             +       RA++G+ +    P   SI+  +         L    K+KKK  E ++  L
Sbjct: 75  YSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK----LHGLAKNKKKLDEIVEKSL 130

Query: 144 KEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
               +  W  +   L      LSGGQ++RL IAR++   P+ +L+DEP + +DPVA + I
Sbjct: 131 TSVGL--WEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188

Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLY 255
             LI++L      I++T H++ +   + DR     +G ++ + T QEI  N      + Y
Sbjct: 189 ENLIQELKKNFTIIVVT-HSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSKTKRY 247

Query: 256 LGD 258
           + D
Sbjct: 248 IVD 250


>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
           Provisional.
          Length = 501

 Score = 96.6 bits (241), Expect = 6e-21
 Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 8/231 (3%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           LL    + K +  V  + G  L V PG ++ L+G NGAGK+T   ++TG+   D+GSI  
Sbjct: 4   LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63

Query: 85  DGNDIT-KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK----DKKKRHEKL 139
            G ++T   P   +   GI  + QE ++   LT+ ENI    E   +    D KK + + 
Sbjct: 64  LGKEVTFNGPKSSQEA-GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA 122

Query: 140 DSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPS-YILLDEPFAGVDPVAISDIH 198
           D LL   N+      L   LS G+++ +EIA+ L SF S  I++DEP   +       + 
Sbjct: 123 DKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL-SFESKVIIMDEPTDALTDTETESLF 181

Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
            +IR+L S+G GI+   H + EI  + D   +   G  +A   V ++ ++ 
Sbjct: 182 RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS 232



 Score = 78.9 bits (195), Expect = 1e-15
 Identities = 58/204 (28%), Positives = 104/204 (50%), Gaps = 10/204 (4%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
           V  V   ++ GEI+G+ G  GAG+T    ++ G +   SG + +DG+++           
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327

Query: 101 GISYLPQEAS---IFRGLTVEENI-LAVLEVYEK-----DKKKRHEKLDSLLKEFNI-TK 150
           GI Y+ ++     +  G++V+EN+ L  L  + +           + +   ++ FNI T 
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP 387

Query: 151 WRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
                  LLSGG ++++ IAR L++ P  ++LDEP  GVD  A  +I+ LI    + G+ 
Sbjct: 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLS 447

Query: 211 ILITDHNVHEILTLIDRAYIIHAG 234
           I++    + E+L + DR  ++H G
Sbjct: 448 IILVSSEMPEVLGMSDRILVMHEG 471


>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC.  SufC is part of the SUF
           system, shown in E. coli to consist of six proteins and
           believed to act in Fe-S cluster formation during
           oxidative stress. SufC forms a complex with SufB and
           SufD. SufC belongs to the ATP-binding cassette
           transporter family (pfam00005) but is no longer thought
           to be part of a transporter. The complex is reported as
           cytosolic (PubMed:12554644) or associated with the
           membrane (PubMed:11943156). The SUF system also includes
           a cysteine desulfurase (SufS, enhanced by SufE) and a
           probable iron-sulfur cluster assembly scaffold protein,
           SufA.
          Length = 243

 Score = 95.8 bits (239), Expect = 9e-21
 Identities = 62/237 (26%), Positives = 99/237 (41%), Gaps = 28/237 (11%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG----LICADSGS 81
           L    L        ++KGV+L VK GEI  ++GPNG+GK+T    + G     +   SG+
Sbjct: 1   LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT--SGT 58

Query: 82  IKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS 141
           I   G D+ ++    RAR G+    Q      G++  E + + L      + +    L  
Sbjct: 59  ILFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD 118

Query: 142 LLKEFNITKWRHVLAPL--------------LSGGQRRRLEIARSLVSFPSYILLDEPFA 187
            LK       +  LA L               SGG+++R EI +  +  P   +LDE  +
Sbjct: 119 FLKLL-----KAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDS 173

Query: 188 GVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTV 242
           G+D  A+  +   I  L       LI  H    +L  I  D  +++  G ++  G V
Sbjct: 174 GLDIDALKIVAEGINRLREPDRSFLIITHY-QRLLNYIKPDYVHVLLDGRIVKSGDV 229


>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
           protein.  This model represents the ATP-binding protein
           of a family of ABC transporters for inorganic phosphate.
           In the model species Escherichia coli, a constitutive
           transporter for inorganic phosphate, with low affinity,
           is also present. The high affinity transporter that
           includes this polypeptide is induced when extracellular
           phosphate concentrations are low. The proteins most
           similar to the members of this family but not included
           appear to be amino acid transporters.
          Length = 247

 Score = 95.8 bits (239), Expect = 1e-20
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 17/231 (7%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKID 85
           L   Y     +K ++L +   ++  L+GP+G GK+T       M  L+      G +  D
Sbjct: 7   LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFD 66

Query: 86  GNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDS 141
           G DI       +  R R+G+ +  Q+ + F  +++ +NI     ++  KDKK+  E ++ 
Sbjct: 67  GQDIYDKKIDVVELRRRVGMVF--QKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEE 123

Query: 142 LLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
            LK+   ++  K R H  A  LSGGQ++RL IAR+L   P  +LLDEP + +DP+A   I
Sbjct: 124 SLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKI 183

Query: 198 HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
             LI++L  +   I+I  HN+ +   + DR    + G ++ +G  ++I  N
Sbjct: 184 EELIQELKKK-YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233


>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
           Family protein. 
          Length = 617

 Score = 94.3 bits (235), Expect = 3e-20
 Identities = 66/222 (29%), Positives = 108/222 (48%), Gaps = 23/222 (10%)

Query: 42  KGVDLYVKPGEIVGLLGPNGAGKTTF-----FYMMTGLICADSGSIKIDGNDITKMPMYR 96
           K V    KPGE++ ++G +GAGKTT      F    G+    SGS+ ++G  I    M  
Sbjct: 42  KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKG--SGSVLLNGMPIDAKEMRA 99

Query: 97  RARLGISYLPQEASIFRGLTVEE--NILAVLEVYEK-DKKKRHEKLDSLLKEFNITKWRH 153
            +    +Y+ Q+      LTV E     A L +  +  KK++ E++D +L+   + K  +
Sbjct: 100 IS----AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN 155

Query: 154 VL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLAS 206
                      LSGG+R+RL  A  L++ P  +  DEP +G+D  +A S + VL + LA 
Sbjct: 156 TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVL-KGLAQ 214

Query: 207 RGIGILITDHN-VHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
           +G  I+ T H    E+  L D+  ++  G V   G+  + + 
Sbjct: 215 KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256


>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
           transporter, lactococcin 972 group.  A gene pair with a
           fairly wide distribution consists of a polypeptide
           related to the lactococcin 972 (see TIGR01653) and
           multiple-membrane-spanning putative immunity protein
           (see TIGR01654). This model represents a small clade
           within the ABC transporters that regularly are found
           adjacent to these bacteriocin system gene pairs and are
           likely serve as export proteins.
          Length = 206

 Score = 93.4 bits (233), Expect = 5e-20
 Identities = 53/192 (27%), Positives = 103/192 (53%), Gaps = 7/192 (3%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           ++KK+    ++  ++L ++ G++  ++G +G+GK+T   ++  L   DSG + ++G +  
Sbjct: 4   ISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETP 63

Query: 91  KMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
            +       +RR +LG  YL Q  ++    TVEEN+   L+  +  KK++ EK    L++
Sbjct: 64  PLNSKKASKFRREKLG--YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEK 121

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
             +          LSGG+++R+ +AR+++  P  IL DEP   +DP    ++  L+ +L 
Sbjct: 122 VGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELN 181

Query: 206 SRGIGILITDHN 217
             G  I+I  H+
Sbjct: 182 DEGKTIIIVTHD 193


>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 93.3 bits (232), Expect = 6e-20
 Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 3/212 (1%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RAR 99
           +KG+ L +  G    LLGPNGAGK+T    + G+     G +K+ G ++        R++
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80

Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159
           +G+ +   +  +F   TV +++         DK +   +++  LK   +  +R      L
Sbjct: 81  VGLVFQDPDDQVFSS-TVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139

Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
           S GQ++R+ IA  L   P  I+LDEP A +DP     +  ++  L ++G  +++  H+V 
Sbjct: 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD 199

Query: 220 EILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
                 D+  ++  G VLA G    ++ ++D+
Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK-SLLTDEDI 230


>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 92.0 bits (228), Expect = 1e-19
 Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 19/241 (7%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICAD--SGSIKIDGNDI 89
           Y   + +KG+ + ++   +V  +GP+G GK+TF   F  M  LI A    G I+IDG +I
Sbjct: 13  YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNI 72

Query: 90  -TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFN 147
             K       R  +  + Q  + F   ++ EN+   L V   KD     ++++  LK   
Sbjct: 73  YDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVNGVKDNAFIRQRVEETLKG-- 129

Query: 148 ITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
              W  V   L      LSGGQ++RL IAR++   PS +L+DEP + +DP++ + +  LI
Sbjct: 130 AALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189

Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLGDR 259
            +L  +   I+I  HN+ +   + D+    + G ++ +   ++I  N  ++  + Y+  R
Sbjct: 190 HEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQNYITGR 248

Query: 260 F 260
           F
Sbjct: 249 F 249


>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
           Several bacterial species have enzymes xylose isomerase
           and xylulokinase enzymes for xylose utilization. Members
           of this protein family are the ATP-binding cassette
           (ABC) subunit of the known or predicted high-affinity
           xylose ABC transporter for xylose import. These genes,
           which closely resemble other sugar transport ABC
           transporter genes, typically are encoded near xylose
           utilization enzymes and regulatory proteins. Note that
           this form of the transporter contains two copies of the
           ABC transporter domain (pfam00005).
          Length = 500

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 11/219 (5%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-CAD-SGSI 82
           LL    + K +  V  + G+DL V+PGE VGL G NGAGK+T   +++G+       G I
Sbjct: 1   LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60

Query: 83  KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK-------KR 135
              G+ +    +    R GI  + QE ++   L+V ENI    E+     +        R
Sbjct: 61  YWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR 120

Query: 136 HEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
            + L   L+       R V      GGQ++ +EIA++L      ++LDEP + +      
Sbjct: 121 AKNLLRELQLDADNVTRPVGD--YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178

Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
            +  +IRDL + G+  +   H ++E+  + D   +I  G
Sbjct: 179 ILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDG 217



 Score = 79.5 bits (196), Expect = 8e-16
 Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 22/224 (9%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA----DSGSIKIDGNDITKMPMYR 96
           V  V   ++ GEI+G+ G  GAG+T    ++  L  A      G++ I+G  +      +
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTE---LVQALFGAYPGKFEGNVFINGKPVDIRNPAQ 332

Query: 97  RARLGISYLPQEAS---IFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFNI 148
             R GI+ +P++     I   L V +NI L+VL+ +      D     + + S ++   +
Sbjct: 333 AIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392

Query: 149 TKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
            K      P+  LSGG +++  +A+ L++ P  ++LDEP  GVD  A  +I+ LI  LA 
Sbjct: 393 -KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451

Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLA----HGTVQEII 246
            G+ I++    + E+L L DR  +I  G +      H   QE +
Sbjct: 452 EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQV 495


>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 19/219 (8%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT----KMPMYRRAR 99
           V++ ++ GE VGL+G  G+GK+T    + GL+   SG I IDG DIT    K+   R+ +
Sbjct: 26  VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK-K 84

Query: 100 LGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
           +G+ +   E  +F   T+E++I      L + E   +++ KR   +  L  E    K   
Sbjct: 85  VGLVFQYPEYQLFEE-TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK--- 140

Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211
             +P  LSGGQ+RR+ IA  +   P  ++LDEP AG+DP    +I   I++L     + I
Sbjct: 141 --SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198

Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
           ++  H++ ++  L DR  +++ G     GT +E+    +
Sbjct: 199 ILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVE 237


>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 91.9 bits (228), Expect = 2e-19
 Identities = 61/217 (28%), Positives = 105/217 (48%), Gaps = 13/217 (5%)

Query: 48  VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLG-ISYLP 106
           V  G I  L+G NG+GK+T F  + G +   SG I I G      P  +  +   ++Y+P
Sbjct: 30  VPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILG-----QPTRQALQKNLVAYVP 84

Query: 107 QEASIFRGLTVEENILAVLEVY------EKDKKKRHEKLDSLLKEFNITKWRHVLAPLLS 160
           Q   +     V    + ++  Y       + KK+  + + + L   ++ ++RH     LS
Sbjct: 85  QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELS 144

Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220
           GGQ++R+ +AR++      ILLDEPF GVD    + I  L+R+L   G  +L++ HN+  
Sbjct: 145 GGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204

Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYLG 257
           +    D   ++  G VLA G  +     +++   + G
Sbjct: 205 VTEFCDYTVMVK-GTVLASGPTETTFTAENLELAFSG 240


>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
           subunit; Provisional.
          Length = 400

 Score = 91.6 bits (227), Expect = 2e-19
 Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 4/212 (1%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP---MYRR 97
           VK   L ++ GEI  ++G +G+GK+T   ++  LI    G + IDG DI K+    +   
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103

Query: 98  ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
            R  I+ + Q  ++   +TV +N    +E+   + ++R EK    L++  +  + H    
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163

Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGILITDH 216
            LSGG R+R+ +AR+L   P  +L+DE F+ +DP+  +++   L++  A     I+   H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223

Query: 217 NVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           ++ E + + DR  I+  G V+  GT  EI++N
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255


>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
           Reviewed.
          Length = 240

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           +++K +    V+  +DL +  GE+V ++GP+G+GK+T    +  L    SG + +DG  +
Sbjct: 6   NVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV 65

Query: 90  TKMPMYRRA-RLGISYLPQEASIFRGLTVEENIL-AVLEVYEKDKKKRHEKLDSLLKEFN 147
               +  R  R     + Q+  +F  LT  EN++   L V    K++  ++   LL +  
Sbjct: 66  NDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVG 125

Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
           + +  H     LSGGQ++R+ IAR+L   P  +L DEP + +DP    ++  +++DLA  
Sbjct: 126 LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE 185

Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL 254
           G+ ++I  H +     +  R   I  G +   G  Q +I N   +RL
Sbjct: 186 GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRL 232


>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
           Provisional.
          Length = 351

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 62/226 (27%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 21  SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSG 80
           ++ + +   ++TK++ S  V+  ++L +K G +V LLGP+G GKTT   ++ GL     G
Sbjct: 2   TQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61

Query: 81  SIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLD 140
            I IDG D+T   + +R    I  + Q  ++F  +++ EN+   L++    K++R +++ 
Sbjct: 62  QIFIDGEDVTHRSIQQR---DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVK 118

Query: 141 SLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
             L+  ++  +       +SGGQ++R+ +AR+L+  P  +L DEP + +D      +   
Sbjct: 119 EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREK 178

Query: 201 IRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           IR+L  +  I  L   H+  E   + D   +++ G ++  G+ QE+
Sbjct: 179 IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224


>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 207

 Score = 91.5 bits (228), Expect = 2e-19
 Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 8/192 (4%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           L    L        +  G+   +  GE + L GPNG+GKTT   ++ GL+   +G+IK+D
Sbjct: 3   LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD 62

Query: 86  GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
           G DI              YL    ++   LTV EN    LE +          + + L+ 
Sbjct: 63  GGDID----DPDVAEACHYLGHRNAMKPALTVAEN----LEFWAAFLGGEELDIAAALEA 114

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
             +    H+    LS GQ+RR+ +AR LVS     +LDEP A +D  A++    LIR   
Sbjct: 115 VGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174

Query: 206 SRGIGILITDHN 217
           ++G  ++   H 
Sbjct: 175 AQGGIVIAATHI 186


>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
            This protein is related to a Proteobacterial ATP
           transporter that exports lipid A and to eukaryotic
           P-glycoproteins.
          Length = 576

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 31/223 (13%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRA 98
            + G++L V+PGE V L+GP+GAGK+T F ++       SG I +DG D+ ++ P   RA
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414

Query: 99  RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKL-------DSLLK 144
           R+ +  +PQ+  +F   +V ENI          EV    +    HE +       D+ L 
Sbjct: 415 RMAL--VPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471

Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRD 203
           E  +T         LSGGQR+R+ IAR+++     +LLDE  + +D  A S+  V    +
Sbjct: 472 ERGVT---------LSGGQRQRIAIARAILKDAPILLLDEATSALD--AESEQLVQQALE 520

Query: 204 LASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
              +G   LI  H +  +L   DR  ++  G ++A GT  E+I
Sbjct: 521 TLMKGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELI 562


>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
           Provisional.
          Length = 343

 Score = 91.0 bits (227), Expect = 3e-19
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 15/227 (6%)

Query: 30  SLTKKY----NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           +++K +     +++ +  V L++  GEI G++G +GAGK+T    +  L    SG + +D
Sbjct: 6   NISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVD 65

Query: 86  GNDITKM--PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
           G D+T +     R+AR  I  + Q  ++    TV +N+   LE+    K +   ++  LL
Sbjct: 66  GQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELL 125

Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
           +   ++         LSGGQ++R+ IAR+L S P  +L DE  + +DP     I  L++D
Sbjct: 126 ELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185

Query: 204 LASR-GIGI-LITDHNVHE---ILTLIDRAYIIHAGGVLAHGTVQEI 245
           +    G+ I LIT    HE   +  + DR  +I AG ++  GTV E+
Sbjct: 186 INRELGLTIVLIT----HEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228


>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
           Family protein. 
          Length = 216

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 53/197 (26%), Positives = 104/197 (52%), Gaps = 8/197 (4%)

Query: 31  LTKKYNSVY--VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
           ++K Y   +   +  ++ ++  GE+V L+G +GAGK+TF  ++ G+     G I+ +G D
Sbjct: 7   VSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQD 66

Query: 89  ITKMPMYR----RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
           +T++        R  +G+ +  Q+  +    TV +N+   L +     +  +E++ + L+
Sbjct: 67  LTRLRGREIPFLRRHIGMVF--QDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALE 124

Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
           +  +    H L   LSGG+++R+ IAR++V  P  +L DEP   +DP    DI  L  + 
Sbjct: 125 KVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEF 184

Query: 205 ASRGIGILITDHNVHEI 221
             RG  +L+  H+++ +
Sbjct: 185 NRRGTTVLVATHDINLV 201


>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
           Provisional.
          Length = 353

 Score = 90.5 bits (225), Expect = 3e-19
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           + K +    V+  + L +  G++V LLGP+G+GKTT   ++ GL    SG I+  G D++
Sbjct: 8   IKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS 67

Query: 91  KMPMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVYEK-DKKKRHEKLDSLLKEF 146
           ++    R ++G  +  Q  ++FR +TV +NI   L VL   E+ +      K+  LL+  
Sbjct: 68  RLHARDR-KVGFVF--QHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV 124

Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
            +          LSGGQ++R+ +AR+L   P  +LLDEPF  +D     ++   +R L  
Sbjct: 125 QLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE 184

Query: 207 --RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
             +   + +T H+  E + + DR  ++  G +   GT  ++
Sbjct: 185 ELKFTSVFVT-HDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224


>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
           This model describes the ATP binding subunits of nitrate
           transport in bacteria and archaea. This protein belongs
           to the ATP-binding cassette (ABC) superfamily. It is
           thought that the two subunits encoded by ntrC and ntrD
           form the binding surface for interaction with ATP. This
           model is restricted in identifying ATP binding subunit
           associated with the nitrate transport. Nitrate
           assimilation is aided by other proteins derived from the
           operon which among others include products of ntrA - a
           regulatory protein; ntrB - a hydropbobic transmembrane
           permease and narB - a reductase.
          Length = 230

 Score = 89.8 bits (223), Expect = 6e-19
 Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 19/213 (8%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMY 95
           +KGV+L ++ GE + L+G +G GK+T   +++GL    SG + ++G  IT     +M ++
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 96  RRARLGISYLPQEASIFRGLTVEENI-LAVLEV-YEKDKKKRHEKLDSLLKEFNITKWRH 153
                      Q  S+   LTV ENI LAV  V  +  K +R   ++  +    +T+   
Sbjct: 61  -----------QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD 109

Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGIL 212
                LSGG ++R+ IAR+L   P  +LLDEPF  +D +   ++   L++      + +L
Sbjct: 110 KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVL 169

Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           +  H+V E L L DR  ++  G     G + E+
Sbjct: 170 MVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202


>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
           Provisional.
          Length = 242

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 62/195 (31%), Positives = 100/195 (51%), Gaps = 6/195 (3%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-- 87
            +   Y +   +  + L    GE + LLGP+GAGK++   ++  L    SG++ I GN  
Sbjct: 7   GINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66

Query: 88  DITKMP---MYRRARLGISYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLL 143
           D +K P     R  R  +  + Q+ +++  LTV++N I A   V    K +   + + LL
Sbjct: 67  DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLL 126

Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
           +   +  +       LSGGQ++R+ IAR+L+  P  +L DEP A +DP   + I  +IR+
Sbjct: 127 ERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186

Query: 204 LASRGIGILITDHNV 218
           LA  GI  +I  H V
Sbjct: 187 LAETGITQVIVTHEV 201


>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 71/243 (29%), Positives = 121/243 (49%), Gaps = 23/243 (9%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
           Y     +K ++L ++  ++  L+GP+G GK+TF      M  LI      G + +DG DI
Sbjct: 13  YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72

Query: 90  TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145
            K  +     R R+G+ +  Q+ + F  +++ +N+      +  KDKKK  E ++  LK 
Sbjct: 73  YKSDIDVNQLRKRVGMVF--QQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG 129

Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
             +  W  V   L      LSGGQ++RL IAR+L   P  +L+DEP + +DP++   I  
Sbjct: 130 AAL--WDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE 187

Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
           LI++L  +   I+I  HN+ +   + D+      G ++  G   ++  N   +R   Y+ 
Sbjct: 188 LIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKRTEDYIT 246

Query: 258 DRF 260
            RF
Sbjct: 247 GRF 249


>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
           subunit; Provisional.
          Length = 257

 Score = 88.1 bits (218), Expect = 2e-18
 Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 18/245 (7%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           L+   L K+Y    V+KGV L    G+++ ++G +G+GK+TF   +  L     GSI ++
Sbjct: 6   LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65

Query: 86  GNDIT--------------KMPMYRRARLGISYLPQEASIFRGLTVEENIL-AVLEVYEK 130
           G  I                     R RL + +  Q  +++  +TV EN++ A ++V   
Sbjct: 66  GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF--QHFNLWSHMTVLENVMEAPIQVLGL 123

Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
            K++  E+    L +  I +      P+ LSGGQ++R+ IAR+L   P  +L DEP + +
Sbjct: 124 SKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSAL 183

Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
           DP  + ++  +++ LA  G  +++  H +     +      +H G +   G  +++  N 
Sbjct: 184 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNP 243

Query: 250 DVRRL 254
              RL
Sbjct: 244 QSPRL 248


>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
          Length = 402

 Score = 88.0 bits (218), Expect = 2e-18
 Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 25/235 (10%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           +    L+ ++    V+ GVDL V+ G +VGL+GPNGAGKTT    + G +   +G++ + 
Sbjct: 4   IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63

Query: 86  GNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDS---- 141
           G+D+  +     +R  ++ +PQ+ S+     V      V+E+     + R +        
Sbjct: 64  GDDVEALSARAASRR-VASVPQDTSLSFEFDVR----QVVEMGRTPHRSRFDTWTETDRA 118

Query: 142 ----LLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
                ++   + ++       LSGG+R+R+ +AR+L      +LLDEP A +      DI
Sbjct: 119 AVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASL------DI 172

Query: 198 H------VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
           +       L+R L   G   +   H++       D   ++  G V A G   +++
Sbjct: 173 NHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227


>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 241

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 61/223 (27%), Positives = 116/223 (52%), Gaps = 12/223 (5%)

Query: 39  YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-R 97
            ++K + +  + G I  ++GP+GAGK+T   ++  LI    GSI IDG DI  + +   R
Sbjct: 17  EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76

Query: 98  ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITK-WRHVLA 156
            ++G+ +  Q+  +F G TV++NI    E     K +++  ++  L    + K +     
Sbjct: 77  RKIGMVF--QQPHLFEG-TVKDNI----EYGPMLKGEKNVDVEYYLSIVGLNKEYATRDV 129

Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITD 215
             LSGG+ +R+ IAR+L + P  +LLDEP + +DP +   I  LI  L ++  + ++   
Sbjct: 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT 189

Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYL 256
           HN+ +   + D    ++ G ++ +    +   N   +V +L++
Sbjct: 190 HNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232


>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 204

 Score = 87.6 bits (218), Expect = 3e-18
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 18/192 (9%)

Query: 43  GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRARLG 101
           G+   +  GE+V + GPNGAGKT+   ++ GL   D+G +   G  I +    Y +  L 
Sbjct: 19  GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL- 77

Query: 102 ISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158
             YL  +  I   LT  EN+     +    + +       L   L +  +  +  V    
Sbjct: 78  --YLGHQPGIKTELTALENLRFYQRLHGPGDDE------ALWEALAQVGLAGFEDVPVRQ 129

Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHN 217
           LS GQ+RR+ +AR  ++     +LDEPF  +D   ++ +  L+   A + G+ IL T   
Sbjct: 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT--- 186

Query: 218 VHEILTLIDRAY 229
            H+ L +     
Sbjct: 187 -HQDLPVASDKV 197


>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 64/246 (26%), Positives = 129/246 (52%), Gaps = 7/246 (2%)

Query: 22  KDSLLSACSLTKKY--NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79
           K+ ++    ++ +Y   + Y +K V   V  GE V ++G NG+GK+T   ++ GL+  ++
Sbjct: 2   KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61

Query: 80  GSIKIDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
           G+I + G  +++  ++  R ++G+ +   +   F G TV++++   LE     +++  E+
Sbjct: 62  GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQ-FVGATVQDDVAFGLENIGVPREEMVER 120

Query: 139 LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
           +D  L++  +  + +     LSGGQ++R+ IA  L   P  I+LDE  + +DP    ++ 
Sbjct: 121 VDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180

Query: 199 VLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID-NQDVRRLYL 256
             +R L   +GI +L   H++ E     DR  +++ G +L  GT +EI      ++ + L
Sbjct: 181 ETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGL 239

Query: 257 GDRFAF 262
              F+ 
Sbjct: 240 DVPFSV 245


>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 87.2 bits (216), Expect = 4e-18
 Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 29/261 (11%)

Query: 20  ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI- 75
            + + +LS  +L   Y   + +  + + +    +  L+GP+G GK+T    F  M  LI 
Sbjct: 1   MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60

Query: 76  -CADSGSIKIDGNDITKM---PMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVY 128
            C  +G I  +G +I       +  R ++G+ +    P   SI+      EN+     ++
Sbjct: 61  GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIY------ENVAYGPRIH 114

Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181
            EK+KK     ++  LK   +  W  V   L      LSGGQ++RL IAR+L   P  IL
Sbjct: 115 GEKNKKTLDTIVEKSLKGAAL--WDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVIL 172

Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
           +DEP + +DP+A + I  LI DL      I++T HN+ +   + D    ++ G ++    
Sbjct: 173 MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVT-HNMQQAARVSDYTGFMYLGKLIEFDK 231

Query: 242 VQEIIDN--QDVRRLYLGDRF 260
             +I +N  +++   Y+  RF
Sbjct: 232 TTQIFENPHEELTENYITGRF 252


>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 574

 Score = 86.4 bits (215), Expect = 6e-18
 Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 26/224 (11%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           V+KG+ L +K GE V LLG  G GK+T   ++T       G I ++G  I     Y  A 
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIAD---YSEAA 411

Query: 100 L--GISYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156
           L   IS + Q   +F   T+ +N +LA             E L  +L++  + K      
Sbjct: 412 LRQAISVVSQRVHLFSA-TLRDNLLLA-------APNASDEALIEVLQQVGLEKLLEDDK 463

Query: 157 PL----------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
            L          LSGG++RRL IAR+L+     +LLDEP  G+D      I  L+ + A 
Sbjct: 464 GLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ 523

Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
               ++IT H +   L   DR  ++  G ++  GT QE++  Q 
Sbjct: 524 NKTVLMIT-HRLTG-LEQFDRICVMDNGQIIEQGTHQELLAQQG 565


>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 214

 Score = 86.4 bits (214), Expect = 7e-18
 Identities = 60/192 (31%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           LL+A +L    N   V   +D +V  GE + + G NGAGKTT   ++ GL+  +SG I+I
Sbjct: 11  LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70

Query: 85  DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
           DG   T+     R+R  ++YL     +   L+  EN+  +  ++ +  K+      S L 
Sbjct: 71  DGKTATRG---DRSRF-MAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMP---GSALA 123

Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
              +  +   L   LS GQ++RL +AR  +S     LLDEP+A +D   I+ ++ +I   
Sbjct: 124 IVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAH 183

Query: 205 ASRGIGILITDH 216
              G   L+T H
Sbjct: 184 LRGGGAALVTTH 195


>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
           protein.  Members of this protein family are the
           ATP-binding subunit of a three-protein transporter. This
           family belongs, more broadly, to the family of proline
           and glycine-betaine transporters, but members have been
           identified by direct characterization and by
           bioinformatic means as choline transporters. Many
           species have several closely-related members of this
           family, probably with variable abilities to act
           additionally on related quaternary amines.
          Length = 382

 Score = 86.4 bits (214), Expect = 7e-18
 Identities = 63/216 (29%), Positives = 113/216 (52%), Gaps = 8/216 (3%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI-DGN---DITKMP--M 94
           V    L ++ GEI  L+G +G+GK++    + GL     GS+ + DG+   D+       
Sbjct: 40  VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAAT 99

Query: 95  YRRARLG-ISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
            RR R   +S + Q+ ++   LTVEEN+   LE+    + +R +++D  L+   + +W  
Sbjct: 100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD 159

Query: 154 VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH-VLIRDLASRGIGIL 212
                LSGG ++R+ +AR+       +L+DEPF+ +DP+  + +   L+   A     I+
Sbjct: 160 KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTII 219

Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
              H++ E L + +R  I+  G ++ HGT +EI+ N
Sbjct: 220 FVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255


>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
           Provisional.
          Length = 233

 Score = 86.4 bits (214), Expect = 7e-18
 Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 21  SKDSLLSACSLTKKYN----SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76
               LL   +L K+Y        V+  V   +  GE++ ++G +G+GK+T  +++ GL  
Sbjct: 1   MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60

Query: 77  ADSGSIKIDGNDITKMP-----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131
             SG +  +G  ++K+        R  +LG  Y  Q   +    T  EN+   L + +K 
Sbjct: 61  PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIY--QFHHLLPDFTALENVAMPLLIGKKK 118

Query: 132 KKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
             + + +   +L    +    +     LSGG+R+R+ IAR+LV+ P  +L DEP   +D 
Sbjct: 119 PAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178

Query: 192 VAISDIHVLIRDLASR-GIGILITDHNVH 219
                I  L+ +L    G   L+  H++ 
Sbjct: 179 RNADSIFQLLGELNRLQGTAFLVVTHDLQ 207


>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
           ATP-binding protein.  Members of this family are the
           ATP-binding protein of a conserved four gene ABC
           transporter operon found next to ectoine unilization
           operons and ectoine biosynthesis operons. Ectoine is a
           compatible solute that protects enzymes from high
           osmolarity. It is released by some species in response
           to hypoosmotic shock, and it is taken up by a number of
           bacteria as a compatible solute or for consumption. This
           family shows strong sequence similiarity to a number of
           amino acid ABC transporter ATP-binding proteins.
          Length = 252

 Score = 86.4 bits (214), Expect = 7e-18
 Identities = 64/238 (26%), Positives = 111/238 (46%), Gaps = 14/238 (5%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
            +TK++  + V+ G++  V  GE V L+GP+G+GK+T   ++  L   D G I+++G  +
Sbjct: 5   DVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQL 64

Query: 90  TKMPM------------YRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRH 136
             MP              R+ R  I  + Q  ++F   TV +N+  A + V    + +  
Sbjct: 65  YHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE 124

Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
           ++   LL    +      +   LSGGQ++R+ IAR+L   P  +L DE  + +DP  + +
Sbjct: 125 KRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184

Query: 197 IHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
           +  +IR LAS   + +L+  H +       DR      G ++  G   EI       R
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEER 242


>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 86.1 bits (213), Expect = 9e-18
 Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 19/239 (7%)

Query: 24  SLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CAD 78
           + +    L   +  V V+ GV+L +    I  L+GP+G+GK+T   +   LI        
Sbjct: 2   NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61

Query: 79  SGSIKIDGNDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE--KDKKKR 135
           SG + +DG DI KM +   R R+ + +  Q  +    L++ EN+   L++    K KK+ 
Sbjct: 62  SGEVYLDGQDIFKMDVIELRRRVQMVF--QIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119

Query: 136 HEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
            E++   L++  +  W  V   L      LSGGQ++RL IAR+L   P  +L DEP A +
Sbjct: 120 QERVRWALEKAQL--WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177

Query: 190 DPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           DP   + I  L  +L  + + I++  H   +   + D    ++ G ++  G  +E+  N
Sbjct: 178 DPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235


>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 285

 Score = 86.0 bits (213), Expect = 1e-17
 Identities = 70/265 (26%), Positives = 127/265 (47%), Gaps = 24/265 (9%)

Query: 13  PEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY--- 69
           P      +S ++++ A  L   Y     +  V + +   ++  ++GP+G GK+TF     
Sbjct: 27  PSGDPAASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCIN 86

Query: 70  MMTGLI--CADSGSIKIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAV 124
            M  LI      G +   G ++      P+  R R+G+ +  Q+ + F   ++ +N+   
Sbjct: 87  RMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVF--QKPNPFPK-SIYDNVAYG 143

Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPS 178
           L++   D     E+++  L+   +  W  V   L      LSGGQ++RL IAR++   P 
Sbjct: 144 LKIQGYDGDI-DERVEESLRRAAL--WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPE 200

Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
            IL+DEP + +DPVA S I  LI +LA     +++T HN+ +   + D+  +   GG L 
Sbjct: 201 VILMDEPASALDPVATSKIEDLIEELAEEYTVVIVT-HNMQQAARISDKTAVFLTGGELV 259

Query: 239 H-GTVQEIIDNQDVRRL--YLGDRF 260
                 +I +N + +R+  Y+  +F
Sbjct: 260 EFDDTDKIFENPESQRVEDYITGKF 284


>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 85.9 bits (212), Expect = 1e-17
 Identities = 68/256 (26%), Positives = 131/256 (51%), Gaps = 23/256 (8%)

Query: 23  DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CA 77
           ++++SA  +   Y +   + G+ L  +  E+  L+GP+G GK+TF   +  +        
Sbjct: 2   ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61

Query: 78  DSGSIKIDGNDI--TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKK 133
            +G IK +G +I  +KM +   R  +G+ +  Q+ + F   +V +N+   L++   KDK+
Sbjct: 62  ITGEIKFEGQNIYGSKMDLVELRKEVGMVF--QQPTPFP-FSVYDNVAYGLKIAGVKDKE 118

Query: 134 KRHEKLDSLLKEFNITKWRHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
              ++++  LK+  I  W+         A   SGGQ++R+ IAR+L   P  +LLDEP +
Sbjct: 119 LIDQRVEESLKQAAI--WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176

Query: 188 GVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
            +DP++ S+I   + +L  +   I++T HN+ +   + D+   +  G ++  G  +E+  
Sbjct: 177 ALDPISSSEIEETLMELKHQYTFIMVT-HNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235

Query: 248 N--QDVRRLYLGDRFA 261
              + +   YL  RF 
Sbjct: 236 APKKQITSDYLNGRFG 251


>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 257

 Score = 85.1 bits (210), Expect = 1e-17
 Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 19/220 (8%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN------DITKMP 93
           ++K + + +    I G++GP+G+GK+T   ++  LI      IK+DG       DI ++ 
Sbjct: 25  ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84

Query: 94  MYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKW 151
             + R  +G+ +  Q+ + F  L++ +NI   L+ +  K+K++  + ++  L++  +  W
Sbjct: 85  AIKLRKEVGMVF--QQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGL--W 140

Query: 152 RHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
           + V       A  LSGGQ++RL IAR+L   P  +L+DEP + +D V    I  LI +L 
Sbjct: 141 KEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200

Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           +  I I+I  HN  ++  + D    ++ G ++  G+  EI
Sbjct: 201 NE-IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239


>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 85.1 bits (211), Expect = 2e-17
 Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 5/217 (2%)

Query: 32  TKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITK 91
            ++      +  V+L VK GE + +LG NG+GK+T    M  L+    G + +DG D + 
Sbjct: 17  NEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD 76

Query: 92  MPMYR--RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
                  R + G+ +   +  I   + VEE++    E      ++  E++D  LK+  + 
Sbjct: 77  EENLWDIRNKAGMVFQNPDNQIVATI-VEEDVAFGPENLGIPPEEIRERVDESLKKVGMY 135

Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
           ++R     LLSGGQ++R+ IA  L   P  I+ DEP A +DP    ++   I++L  + G
Sbjct: 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYG 195

Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           I I++  H + E +   DR  ++ +G V+  GT +EI
Sbjct: 196 ITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEI 231


>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 85.2 bits (211), Expect = 2e-17
 Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 38/251 (15%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89
           Y     +  VDL +    +   +GP+G GK+TF      M   I  C  +G I +DG DI
Sbjct: 29  YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDI 88

Query: 90  TKM---PMYRRARLGISYL---PQEASIFRGLTVEENI--------LAVLEVYEKDKKKR 135
                  +  RAR+G+ +    P   SI+      EN+        LA      + K + 
Sbjct: 89  YDPRLDVVELRARVGMVFQKPNPFPKSIY------ENVAYGPRIHGLA------RSKAEL 136

Query: 136 HEKLDSLLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
            E +++ L++   +   K R H     LSGGQ++RL IAR++   P  IL+DEP + +DP
Sbjct: 137 DEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDP 196

Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
           +A + +  LI +L      I+I  H++ +   +  R    H G ++  G  +++  N D 
Sbjct: 197 IATAKVEELIDELRQN-YTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDD 255

Query: 252 RRL--YLGDRF 260
            R   Y+  RF
Sbjct: 256 PRTQDYITGRF 266


>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 84.9 bits (210), Expect = 2e-17
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 21/230 (9%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGNDI 89
           Y S +V+KGVDL +    +  L+GP+G GK+T       L+  +      G +++ G +I
Sbjct: 14  YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI 73

Query: 90  TKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE--KDKKKRHEKLDSLLK 144
                 P+  R  +G+ +  Q  + F  LT+ +N+   +++    K KK+  E+++  LK
Sbjct: 74  YSPDVDPIEVRREVGMVF--QYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131

Query: 145 EFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
           +     W  V   L      LSGGQR+RL IAR+L   P  +L+DEP A +DPV  + I 
Sbjct: 132 K--AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189

Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
            L+ +L      +L+T H+  +   + D    ++ G ++  G  +++ +N
Sbjct: 190 ELLFELKKEYTIVLVT-HSPAQAARVSDYVAFLYLGKLIEVGPTRKVFEN 238


>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
           component A2.  The enzyme that catalyzes the final step
           in methanogenesis, methyl coenzyme M reductase, contains
           alpha, beta, and gamma chains. In older literature, the
           complex of alpha, beta, and gamma chains was termed
           component C, while this single chain protein was termed
           methyl coenzyme M reductase system component A2.
          Length = 520

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 16/254 (6%)

Query: 9   GIEMPEFQENRASKDSLLSACSLTKKYNSV-----YVVKGVDLYVKPGEIVGLLGPNGAG 63
           G+   E +      + ++   +++K+Y SV       V  V L VK GEI G++G +GAG
Sbjct: 263 GVSEVEKECEVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAG 322

Query: 64  KTTFFYMMTGLICADSGSIKI----DGNDITKM-PMYR-RARLGISYLPQEASIFRGLTV 117
           KTT   ++ G++   SG + +    +  D+TK  P  R RA+  I  L QE  ++   TV
Sbjct: 323 KTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTV 382

Query: 118 EENILAVLEVYEKDKKKRHEKLDSL-LKEFNITKWRHVLAPL---LSGGQRRRLEIARSL 173
            +N+   + +   D+  R + + +L +  F+  K   +L      LS G+R R+ +A+ L
Sbjct: 383 LDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVL 442

Query: 174 VSFPSYILLDEPFAGVDPVAISDI-HVLIRDLASRGIGILITDHNVHEILTLIDRAYIIH 232
           +  P  ++LDEP   +DP+   D+ H +++         +I  H++  +L + DRA ++ 
Sbjct: 443 IKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMR 502

Query: 233 AGGVLAHGTVQEII 246
            G ++  G  +EI+
Sbjct: 503 DGKIVKIGDPEEIV 516



 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 61/252 (24%), Positives = 114/252 (45%), Gaps = 36/252 (14%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL---------------I 75
           LTKK++   V+K +   ++ GE++G+LG +GAGK+   +++ G+               +
Sbjct: 6   LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVAL 65

Query: 76  CADSGSIKID----------GNDITKM---------PMYRRARLGISYLPQEA-SIFRGL 115
           C   G ++            G  +             + RR R  I+ + Q   +++   
Sbjct: 66  CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD 125

Query: 116 TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVS 175
           TV +N+L  LE    + K+   +   L++   ++     +A  LSGG+++R+ +AR L  
Sbjct: 126 TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAK 185

Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRAYIIHAG 234
            P   L DEP   +DP     +H  + +   + GI +++T H    I  L D+A  +  G
Sbjct: 186 EPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENG 245

Query: 235 GVLAHGTVQEII 246
            +   GT  E++
Sbjct: 246 EIKEEGTPDEVV 257


>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 305

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 44/281 (15%)

Query: 14  EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY---M 70
           E+ +     D+ LS   L   Y   + +KGV + +    +  L+GP+G GK+TF      
Sbjct: 34  EWTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNR 93

Query: 71  MTGLICAD--SGSIKIDGNDI-------------------TKMPMYRRARLGISYLPQE- 108
           M   I A    GS+++DG DI                   +  P  +  R  ISY P++ 
Sbjct: 94  MNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKH 153

Query: 109 ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGG 162
             I  GL      LA L +   DK    E ++  L++  +  W  V   L      LSGG
Sbjct: 154 GDINTGL------LARL-LGRDDKDAEDELVERSLRQAAL--WDEVNDRLDDNALGLSGG 204

Query: 163 QRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEIL 222
           Q++RL IAR L   P  IL+DEP + +DP+A S I  LI +LA     +++T HN+ +  
Sbjct: 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVT-HNMQQAA 263

Query: 223 TLIDRAYIIHAGGVLA-HGTVQEIIDNQDVRRL--YLGDRF 260
            + D+  +   GG L  +    +I +N + +R+  Y+  +F
Sbjct: 264 RISDQTAVFLTGGELVEYDDTDKIFENPESQRVEDYITGKF 304


>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
           This family represents the NikE subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
          Length = 265

 Score = 84.1 bits (208), Expect = 3e-17
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 25/247 (10%)

Query: 24  SLLSACSLTKKYNS---------VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
           SLL    +T  Y +           V+  V L ++ GE VGLLG +G GK+T   ++ GL
Sbjct: 1   SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60

Query: 75  ICADSGSIKIDGNDITKM-PMYRRA-RLGISYLPQEA--SIFRGLTVEENILAVLEVYEK 130
                G++   G D+ ++    RRA R  +  + Q++  ++   +TV + I   L     
Sbjct: 61  EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS 120

Query: 131 -DKKKRHEKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAG 188
            D+ ++  ++  LL    + ++    L   LSGGQ +R+ IAR+L   P  I+LDE  + 
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180

Query: 189 VDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
           +D V  + I  L+R L    G   L   H++  + +   R  ++  G         +I++
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG---------QIVE 231

Query: 248 NQDVRRL 254
             DV +L
Sbjct: 232 ECDVAQL 238


>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 246

 Score = 83.5 bits (206), Expect = 5e-17
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 20/232 (8%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICADSGSIKIDGNDITKMPMYR-RAR 99
           +++ ++  +I  L+G +G GK+TF   F  M   I    G ++I+G D+    +   R  
Sbjct: 21  INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80

Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE--------KLDSLLKEFNITKW 151
           +G+ +  Q+ ++F   ++ ENI    +++   K K  E        +   L +E      
Sbjct: 81  VGMVF--QQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137

Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
           ++ LA  LSGGQ++RL IAR+L   P  +LLDEP + +DP++   I  L+++L S  + +
Sbjct: 138 QNALA--LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSM 194

Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN--QDVRRLYLGDRFA 261
           ++  HN+ +   + D     H G ++  G  +E  +N  Q+  + YL   F 
Sbjct: 195 IMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLSGAFG 246


>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 83.5 bits (206), Expect = 5e-17
 Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 22/243 (9%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLICAD--SGSIKIDGNDI 89
           +   + VK V +      +  ++GP+G GK+T       M  L+ +   +G I +D  DI
Sbjct: 14  FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73

Query: 90  TKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKE 145
                 P+  R R+G+ +  Q+ + F  +++ +N++A  ++  + ++ +  E ++S LK 
Sbjct: 74  YDRGVDPVSIRRRVGMVF--QKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKR 131

Query: 146 FNITKWRHVL------APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
             +  W  V       A  LSGGQ++RL IAR++   P  IL+DEP + +DP++   I  
Sbjct: 132 --VALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEE 189

Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
           LI +L  +   I+I  HN+ +   + D     + G ++  G  ++I    + ++   Y+ 
Sbjct: 190 LIEELKEK-YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTEDYIT 248

Query: 258 DRF 260
            RF
Sbjct: 249 GRF 251


>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
          Length = 251

 Score = 83.2 bits (206), Expect = 6e-17
 Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 34/196 (17%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           V+  V L +KPG+I+ LLGPNGAGK+T   ++ GL+  D G IK            R  +
Sbjct: 19  VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK------------RNGK 66

Query: 100 LGISYLPQEASI--FRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL-A 156
           L I Y+PQ+  +     LTV   +       ++D          +L      +  H++ A
Sbjct: 67  LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED----------ILPALKRVQAGHLIDA 116

Query: 157 PL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD---PVAISD-IHVLIRDLASRGIG 210
           P+  LSGG+ +R+ +AR+L++ P  ++LDEP  GVD    VA+ D I  L R+L      
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRREL---DCA 173

Query: 211 ILITDHNVHEILTLID 226
           +L+  H++H ++   D
Sbjct: 174 VLMVSHDLHLVMAKTD 189


>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 305

 Score = 83.2 bits (206), Expect = 7e-17
 Identities = 61/256 (23%), Positives = 117/256 (45%), Gaps = 42/256 (16%)

Query: 31  LTKKYNS-----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           + K +N      +  +  V + +  GE + ++G  G+GKTTF   +  L+  D+G+I+  
Sbjct: 8   IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67

Query: 86  GND-----------------ITKMPMYR--------RARLGISYLPQEASIFRGLTVEEN 120
             D                 + +   ++        R R+G+ +   E  +F   T+E++
Sbjct: 68  FKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKD 126

Query: 121 IL---AVLEVYEKDKKKRHEKLDSL--LKEFNITKWRHVLAPL-LSGGQRRRLEIARSLV 174
           I+     + V +++ KKR  K   L  L E  + +     +P  LSGGQ+RR+ +A  L 
Sbjct: 127 IIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR-----SPFELSGGQKRRVALAGILA 181

Query: 175 SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
             P +++ DEP AG+DP  + +I  +  +L  +G  I++  H++  +L    R      G
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDG 241

Query: 235 GVLAHGTVQEIIDNQD 250
            ++  G   +I+ +  
Sbjct: 242 KIIKDGDTYDILSDNK 257


>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. 
          Length = 711

 Score = 82.8 bits (205), Expect = 8e-17
 Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 19/226 (8%)

Query: 37  SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-MY 95
            V V+KG+   + PGE+V L+GP+G+GK+T   ++  L     G + +DG  + +    Y
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552

Query: 96  RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLLKEFNITKWR 152
              ++ +  + QE  +F G +V ENI   L     ++     K       + EF      
Sbjct: 553 LHRQVAL--VGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDT 609

Query: 153 HV--LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
            V      LSGGQ++R+ IAR+LV  P  ++LDE  + +D      +    R  ASR + 
Sbjct: 610 EVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD-AECEQLLQESRSRASRTV- 667

Query: 211 ILITDHNVHEILTLIDRA---YIIHAGGVLAHGTVQEIIDNQDVRR 253
           +LI        L+ ++RA    ++  G V+  GT ++++++Q   +
Sbjct: 668 LLIAHR-----LSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708


>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 82.3 bits (203), Expect = 1e-16
 Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 27/232 (11%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS-------GSIKIDGN 87
           Y     VK V + +   +I  ++GP+G GKTT    +  +   D        G I   G 
Sbjct: 13  YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM--NDHIPGFRVEGKIYFKGQ 70

Query: 88  DITK----MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSL 142
           DI      +  YR+ ++G+ +  Q+ + F  +++ +N+     ++  K K K    ++  
Sbjct: 71  DIYDPQLDVTEYRK-KVGMVF--QKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEES 126

Query: 143 LKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
           LK+  +  W  V + L      LSGGQ++RL IAR+L   P  ILLDEP + +DP+A   
Sbjct: 127 LKKAAL--WDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQR 184

Query: 197 IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           I  L+ +L S    I+I  HN+ + + + D    ++ G ++ +G  +EI++ 
Sbjct: 185 IEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235


>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 267

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 27/247 (10%)

Query: 20  ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGL 74
             ++  LS   L   Y     +KG+D+  +  +I  L+GP+G+GK+T+   +     T  
Sbjct: 15  PEEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTID 74

Query: 75  ICADSGSIKIDGNDITK--MPMYR-RARLGISYL---PQEASIFRGLTVEENILAVLEVY 128
           I   +G I   G DI +  + +Y  R  +G+ +    P   SI+      ENI   LE  
Sbjct: 75  IARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIY------ENITFALERA 128

Query: 129 -EKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYIL 181
             KDKK   E +++ LK+  +  W  V   L      LSGGQ++RL IAR++   P  +L
Sbjct: 129 GVKDKKVLDEIVETSLKQAAL--WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILL 186

Query: 182 LDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
           +DEP + +DP++   +   + +L      I++T HN+ +     D     + G ++ +  
Sbjct: 187 MDEPASALDPISTMQLEETMFELKKNYTIIIVT-HNMQQAARASDYTAFFYLGDLIEYDK 245

Query: 242 VQEIIDN 248
            + I  N
Sbjct: 246 TRNIFTN 252


>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 53/198 (26%), Positives = 100/198 (50%), Gaps = 15/198 (7%)

Query: 29  CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS--GSIKIDG 86
              T++     ++ GV     PGEI+ +LGP+G+GK+T    + G I  ++  G+I  + 
Sbjct: 72  SDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN 131

Query: 87  NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL---DSLL 143
              TK  + R       ++ Q+  ++  LTV E ++    +       + EK+   +S++
Sbjct: 132 RKPTKQILKR-----TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVI 186

Query: 144 KEFNITKWRHVLAPL-----LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
            E  +TK  + +        +SGG+R+R+ IA  ++  PS ++LDEP +G+D  A   + 
Sbjct: 187 SELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246

Query: 199 VLIRDLASRGIGILITDH 216
           + +  LA +G  I+ + H
Sbjct: 247 LTLGSLAQKGKTIVTSMH 264


>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
           protein; Provisional.
          Length = 369

 Score = 82.0 bits (203), Expect = 1e-16
 Identities = 66/217 (30%), Positives = 115/217 (52%), Gaps = 22/217 (10%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           ++TK Y  V + K ++L +  GE V  +GP+G GK+T   M+ GL    SG + I    +
Sbjct: 8   NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67

Query: 90  TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT 149
             +P   R   G+  + Q  +++  L+V EN+   L++    K++ +++++ + +   + 
Sbjct: 68  NDVPPAER---GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE---VL 121

Query: 150 KWRHVL---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-------VAISDIHV 199
           +  H+L      LSGGQR+R+ I R+LV+ PS  LLDEP + +D        + IS +H 
Sbjct: 122 QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH- 180

Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
             + L      I +T H+  E +TL D+  ++ AG V
Sbjct: 181 --KRLGR--TMIYVT-HDQVEAMTLADKIVVLDAGRV 212


>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
          Length = 248

 Score = 81.9 bits (203), Expect = 1e-16
 Identities = 58/211 (27%), Positives = 98/211 (46%), Gaps = 22/211 (10%)

Query: 48  VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
           V+ GEI+ L+GPNGAGK+T    M GL+   SGSI+  G  +        AR   +YL Q
Sbjct: 19  VRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHR-AYLSQ 76

Query: 108 EAS------IFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSG 161
           + +      +F+ LT+ +      E            L+ + +   +          LSG
Sbjct: 77  QQTPPFAMPVFQYLTLHQPDKTRTEAVAS-------ALNEVAEALGLDDKLGRSVNQLSG 129

Query: 162 G--QRRR-----LEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILIT 214
           G  QR R     L++   +      +LLDEP   +D    + +  L+ +L  +GI ++++
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMS 189

Query: 215 DHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
            H+++  L   DR +++  G +LA G   E+
Sbjct: 190 SHDLNHTLRHADRVWLLKQGKLLASGRRDEV 220


>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 81.9 bits (202), Expect = 1e-16
 Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 23/243 (9%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
           Y     +KG+DL     EI  L+GP+G GK+T+      M  LI     +G++ + G +I
Sbjct: 15  YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNI 74

Query: 90  TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145
                     R ++G+ +  Q+ + F   ++ EN++  L +   KDK    E +++ LK+
Sbjct: 75  YAPNEDVVQLRKQVGMVF--QQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ 131

Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
             I  W  V   L      LSGGQ++R+ IAR L   P  ILLDEP + +DP++ + I  
Sbjct: 132 AAI--WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189

Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
           ++ +L  +   IL+T H++H+   + D+      G ++     +++  N   +    Y+ 
Sbjct: 190 MLLELRDQYTIILVT-HSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKETEDYIT 248

Query: 258 DRF 260
            RF
Sbjct: 249 GRF 251


>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 272

 Score = 81.6 bits (202), Expect = 2e-16
 Identities = 69/281 (24%), Positives = 126/281 (44%), Gaps = 31/281 (11%)

Query: 1   MKSIRNYLGIEMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPN 60
           M S    L         N + + + L   +L   Y     +  + + +    +   +GP+
Sbjct: 1   MISHGITLMALPLLDVLNLSDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPS 60

Query: 61  GAGKTTF---FYMMTGLI--CADSGSIKIDGNDI----TKMPMYRRARLGISYL---PQE 108
           G GK+T    F  M  L+  C   G I++DG +I      +   RR R+G+ +    P  
Sbjct: 61  GCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR-RVGMVFQRPNPFP 119

Query: 109 ASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSG 161
            SI+      EN++  L +    +++   E ++  L+   +  W  V   L      LSG
Sbjct: 120 KSIY------ENVVYGLRLQGINNRRVLDEAVERSLRGAAL--WDEVKDRLHENAFGLSG 171

Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEI 221
           GQ++RL IAR++   P  +LLDEP + +DP++   I  LI +L S+   I+I  HN+ + 
Sbjct: 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK-YTIVIVTHNMQQA 230

Query: 222 LTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLGDRF 260
             + D    ++ G ++ +G    +  +   ++   Y+  R+
Sbjct: 231 ARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTEDYITGRY 271


>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 274

 Score = 81.2 bits (200), Expect = 2e-16
 Identities = 61/219 (27%), Positives = 110/219 (50%), Gaps = 6/219 (2%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI---KIDGNDITKMPMYRR 97
           ++ ++L +K GE +G++G NG+GK+T    + GL+    G +    ID  D +K+   R+
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77

Query: 98  ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
             +GI +   E   F G TVEE++    E       +  +++D  L E  + K+RH    
Sbjct: 78  L-VGIVFQNPETQ-FVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPK 135

Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217
            LSGGQ + + +A  L   P  ++ DE  + +DP +   +   I+ L  +G  I+   HN
Sbjct: 136 TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHN 195

Query: 218 VHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLYL 256
           + E L   DR  ++  G ++  G  + ++ +  ++ L L
Sbjct: 196 LEE-LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGL 233


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 21/223 (9%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-CAD-SGSI 82
           LL   ++TK +  V  +  V L V+ GEIV L G NGAGK+T   +++G+       G I
Sbjct: 5   LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64

Query: 83  KIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK---DKKKRHEKL 139
             +G ++    +    R GI+ + QE ++ + L+V ENI    E+      D    + + 
Sbjct: 65  IFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA 124

Query: 140 DSLLKEFNI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
             LL +  +     T   +     L  GQ++ +EIA++L      ++LDEP A    +  
Sbjct: 125 QKLLAQLKLDINPATPVGN-----LGLGQQQLVEIAKALNKQARLLILDEPTA---SLTE 176

Query: 195 SDIHVL---IRDLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
           S+  VL   IRDL + GI  +   H ++E+  + D   +I  G
Sbjct: 177 SETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219



 Score = 78.4 bits (194), Expect = 2e-15
 Identities = 60/225 (26%), Positives = 104/225 (46%), Gaps = 22/225 (9%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA----DSGSIKIDGNDITKMPMY 95
            V  V   ++ GEI+G+ G  GAG+T    ++  L  A      G I IDG  +      
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTE---LVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333

Query: 96  RRARLGISYLPQEAS---IFRGLTVEENI-LAVLEVYEK----DKKKRHEKLDSLLKEFN 147
           +    GI+ +P++     I   + V +NI LA L+ +      D     + +   ++   
Sbjct: 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK 393

Query: 148 ITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
           + K       +  LSGG +++  +A+ L+  P  ++LDEP  G+D  A  +I+ LI  L 
Sbjct: 394 V-KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV 452

Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLA----HGTVQEII 246
            +G+ I++    + E+L L DR  ++H G +      H   QE +
Sbjct: 453 QQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLTQEQV 497


>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 289

 Score = 80.4 bits (198), Expect = 4e-16
 Identities = 66/243 (27%), Positives = 125/243 (51%), Gaps = 14/243 (5%)

Query: 21  SKDSLLSACSLTKKYNSVYVVKGVD---LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA 77
           SKD +L   S T    + +  K ++   L  K  ++  ++G  G+GK+T   +  GLI +
Sbjct: 4   SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63

Query: 78  DSGSI-----KIDGNDITKMPMYRRAR--LGISYLPQEASIFRGLTVEENILAVLEVYEK 130
           ++G        I  N + K+   +R R  +G+ +   E  +F+  T+E++I        +
Sbjct: 64  ETGQTIVGDYAIPAN-LKKIKEVKRLRKEIGLVFQFPEYQLFQE-TIEKDIAFGPVNLGE 121

Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
           +K++ ++K+  LLK   + +     +P  LSGGQ+RR+ +A  +    + ++LDEP  G+
Sbjct: 122 NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181

Query: 190 DPVAISD-IHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           DP    D I++  R        I++  HN+ ++L + D   ++H G V++ G+  EI  N
Sbjct: 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241

Query: 249 QDV 251
           Q++
Sbjct: 242 QEL 244


>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 253

 Score = 80.6 bits (199), Expect = 4e-16
 Identities = 72/252 (28%), Positives = 120/252 (47%), Gaps = 23/252 (9%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSG 80
           + A  L+  Y     +  + L  +  ++  L+GP+G GK+TF      M  LI      G
Sbjct: 7   MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66

Query: 81  SIKIDGNDITKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRH 136
            I +DG +I    +     R R+G+ +  Q+ + F   ++ EN+   L V   KDK    
Sbjct: 67  EILLDGENIYDPHVDVVELRRRVGMVF--QKPNPFPK-SIFENVAYGLRVNGVKDKAYLA 123

Query: 137 EKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
           E+++  L+   +  W  V   L      LSGGQ++RL IAR+L   P  +L+DEP + +D
Sbjct: 124 ERVERSLRHAAL--WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181

Query: 191 PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
           P+A   I  LI +L +R   I+I  HN+ +   + D     + G ++  G  ++I     
Sbjct: 182 PIATQKIEELIHELKAR-YTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240

Query: 251 VRRL--YLGDRF 260
            ++   Y+  RF
Sbjct: 241 EKQTEDYITGRF 252


>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 288

 Score = 80.5 bits (198), Expect = 4e-16
 Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 27/223 (12%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-----RA 98
           +DL VK G    L+G  G+GK+T    + GL+    G + +    ++     +     R 
Sbjct: 25  IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84

Query: 99  RLGISYLPQEASIFRGLTVEENILAVLEV--------YEKDKKKRHEKLD--SLLKEFNI 148
           ++G+ +   E+ +F     EE +L  +           EK +K   EKL+   L  EF  
Sbjct: 85  KVGVVFQFPESQLF-----EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF-- 137

Query: 149 TKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
             W    +P  LSGGQ RR+ IA  L   P  ++LDEP AG+DP A  ++  L   +   
Sbjct: 138 --WEK--SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS 193

Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
           G  +++  H + ++    D  Y++  G +++ GT  ++    D
Sbjct: 194 GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVD 236


>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 265

 Score = 80.4 bits (198), Expect = 4e-16
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 33/233 (14%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICAD--SGSIKIDGNDI 89
           Y     +K +++ V   ++  L+GP+G GK+TF   F  M  L   +   G I +  +++
Sbjct: 26  YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85

Query: 90  TKM-----PMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKR---HEK 138
             +     P+  R R+ + +    P   SIF      EN+   L +  +  K+R    E+
Sbjct: 86  NILSPEVDPIEVRMRISMVFQKPNPFPKSIF------ENVAYGLRI--RGVKRRSILEER 137

Query: 139 LDSLLKEFNITKWRHV------LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
           +++ L+  N   W  V      LA  LSGGQ++RL IAR+L + P  +L DEP + +DP+
Sbjct: 138 VENALR--NAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195

Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           A + I  LI DL ++ + ILI  HN+ +   + D    ++ G ++  G    I
Sbjct: 196 ATASIEELISDLKNK-VTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247


>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 268

 Score = 80.4 bits (198), Expect = 5e-16
 Identities = 74/267 (27%), Positives = 127/267 (47%), Gaps = 23/267 (8%)

Query: 11  EMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM 70
           E  E      +K+ +L    L+  Y     V  + + ++   +  L+GP+G GK+TF   
Sbjct: 7   EKIEIAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRS 66

Query: 71  ---MTGLI--CADSGSIKIDGNDITKMPM-YRRARLGISYLPQEASIFRGLTVEENILAV 124
              M  LI      G I  +G +I    +     R  I  + Q+ + F   ++  NI   
Sbjct: 67  INRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHA 125

Query: 125 LEVYEKDKKKRHEKLDSLLKEFNITK---WR------HVLAPLLSGGQRRRLEIARSLVS 175
           L+ Y  +++K    LD +++E ++TK   W       H  A  LSGGQ++RL IAR+L  
Sbjct: 126 LK-YAGERRK--SVLDEIVEE-SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181

Query: 176 FPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGG 235
            P+ +LLDEP + +DP++ + I  LI +L      I+I  HN+ + L + DR      G 
Sbjct: 182 KPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240

Query: 236 VLAHGTVQEIIDNQDVRRL--YLGDRF 260
           ++ +   ++I  +   ++   Y+  RF
Sbjct: 241 LVEYDQTEQIFTSPKQQKTEDYINGRF 267


>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
            Members of this family are the PhnK protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated complex. This protein (PhnK) and the
           adjacent-encoded PhnL resemble transporter ATP-binding
           proteins but are suggested, based on mutatgenesis
           studies, to be part of this complex rather than part of
           a transporter per se.
          Length = 253

 Score = 80.3 bits (198), Expect = 5e-16
 Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 13/237 (5%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           LL    L+K Y      + V   + PGE++G++G +G+GK+T    + G +  D G+   
Sbjct: 3   LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62

Query: 85  DGND-----ITKMPMYRRARL-----GISYLPQEASIFRGLTVEENILA-VLEVYEKDKK 133
                    + ++    R RL     G  +      +   ++   NI   ++ +  +   
Sbjct: 63  IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122

Query: 134 KRHEKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
                    L+E  I   R    P   SGG ++RL+IAR+LV+ P  + +DEP  G+D  
Sbjct: 123 NIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182

Query: 193 AISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
             + +  L+R L    G+ ++I  H++     L  R  ++  G V+  G   +++D+
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239


>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 80.1 bits (198), Expect = 5e-16
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           +L    L   Y     ++ ++L ++ GE++ +LGP+G GKTT   ++ G +    GSI +
Sbjct: 1   MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60

Query: 85  DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
           DG  +   P   R   G+ +  Q   +     V++N+   L++   +K +R E    +LK
Sbjct: 61  DGKPVEG-PGAER---GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114

Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
           +  +          LSGGQR+R+ IAR+L + P  +LLDEPF  +D
Sbjct: 115 KVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160


>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
           transporter, peptidase/ATP-binding protein.  This
           protein describes an multidomain ABC transporter subunit
           that is one of three protein families associated with
           some regularity with a distinctive family of putative
           bacteriocins. It includes a bacteriocin-processing
           peptidase domain at the N-terminus. Model TIGR03793
           describes a conserved propeptide region for this
           bacteriocin family, unusual because it shows obvious
           homology a region of the enzyme nitrile hydratase up to
           the classic Gly-Gly cleavage motif. This family is
           therefore predicted to be a subunit of a bacteriocin
           processing and export system characteristic to this
           system that we designate NHPM, Nitrile Hydratase
           Propeptide Microcin.
          Length = 710

 Score = 79.6 bits (197), Expect = 8e-16
 Identities = 70/223 (31%), Positives = 103/223 (46%), Gaps = 43/223 (19%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           +++   L ++PG+ V L+G +G+GK+T   ++ GL    SG I  DG    ++P   R  
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP---REV 550

Query: 100 L--GISYLPQEASIFRGLTVEENIL--------AVLEVYEKDK------KKRHEKLDSLL 143
           L   ++ + Q+  +F G TV +N+         A L    KD         R    D+ L
Sbjct: 551 LANSVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL 609

Query: 144 KE--FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
            E   N           LSGGQR+RLEIAR+LV  PS ++LDE  + +DP     I    
Sbjct: 610 AEGGAN-----------LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKII---D 655

Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
            +L  RG   +I     H + T+ D   II    VL  G V +
Sbjct: 656 DNLRRRGCTCIIV---AHRLSTIRDCDEII----VLERGKVVQ 691


>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 79.4 bits (196), Expect = 8e-16
 Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 20/232 (8%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLICAD--SGSIKID 85
           L   Y S + V+ V+L ++P  +   +GP+G GK+T       M  +I      G + +D
Sbjct: 10  LNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLD 69

Query: 86  GNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDS 141
           G D+      P+  R  +G+ +  Q  + F  +++ +N++A L++   ++KK   E ++ 
Sbjct: 70  GEDLYGPGVDPVAVRRTIGMVF--QRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEK 127

Query: 142 LLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAIS 195
            L+  N+  W  V   L      LSGGQ++RL IAR++   P  +L+DEP + +DP++  
Sbjct: 128 SLRGANL--WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTL 185

Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
            I  LI +L      I+I  HN+ +   + D+    +       G + EI D
Sbjct: 186 AIEDLINELKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236


>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 286

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 31/248 (12%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
           Y     VK V+  +    +  ++GP+G GK+TF      M  LI  C  +G++  DG DI
Sbjct: 49  YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI 108

Query: 90  ----TKMPMYRRARLGISYL---PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
               T   + R+ ++G+ +    P   SIF  +     +  +      DKK+  E ++  
Sbjct: 109 YGKFTDEVLLRK-KIGMVFQKPNPFPKSIFDNIAYGPRLHGI-----NDKKQLEEIVEKS 162

Query: 143 LKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
           L++  +  W  V   L      LSGGQ++RL +AR+L   P  +LLDEP + +DP A + 
Sbjct: 163 LRKAAL--WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAK 220

Query: 197 IHVLIRDLASRG-IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL- 254
           I  LI++L  RG   I+I  HN+ +   + D     + G ++ H    ++  N   R   
Sbjct: 221 IEDLIQEL--RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDRMTE 278

Query: 255 -YLGDRFA 261
            Y+  RF+
Sbjct: 279 DYITGRFS 286


>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 249

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 16/226 (7%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--CADSGSIKIDGNDI 89
           Y     +K ++L +   ++  L+GP+G GK+T       M  LI     +G + +DG DI
Sbjct: 13  YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72

Query: 90  TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNI 148
                    R+ +  + Q+ + F  +++ EN+   L     KDKK   E ++  L+   +
Sbjct: 73  YGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL 131

Query: 149 TKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
             W  V   L      LSGGQ++RL IAR++   P  IL+DEP + +DP+A   I  L+ 
Sbjct: 132 --WDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189

Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           +L  +   I+I  H++ +   + DR      G ++ H   Q I  N
Sbjct: 190 EL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234


>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 277

 Score = 78.2 bits (192), Expect = 2e-15
 Identities = 56/215 (26%), Positives = 111/215 (51%), Gaps = 4/215 (1%)

Query: 33  KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM 92
           +K + V  + GV   +  GE V ++G NG+GK+T   ++ GL     G +KIDG  +T  
Sbjct: 15  EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74

Query: 93  PMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW 151
            ++  R ++G+ +   +   F G TVE+++   +E     +++  +++D  L   N+  +
Sbjct: 75  NVWNLRRKIGMVFQNPDNQ-FVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF 133

Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIG 210
           +      LSGGQ++R+ +A  +   P  I+LDE  + +DP    +I  +I ++  +  + 
Sbjct: 134 KTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT 193

Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           +L   H++ E  +  DR  ++ AG ++      E+
Sbjct: 194 VLSITHDLDEAAS-SDRILVMKAGEIIKEAAPSEL 227


>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 78.3 bits (193), Expect = 2e-15
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 21/242 (8%)

Query: 22  KDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI--C 76
            + +L    L+  YN    +  V L   P EI  L+GP+G+GK+T       M  L    
Sbjct: 2   TEPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEV 61

Query: 77  ADSGSIKIDGNDI---TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDK 132
             +GSI  +G++I       +  R  +G+ +  Q+ + F  +++ EN++  L +   KDK
Sbjct: 62  TITGSIVYNGHNIYSPRTDTVDLRKEIGMVF--QQPNPFP-MSIYENVVYGLRLKGIKDK 118

Query: 133 KKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPF 186
           +   E ++  LK  +I  W  V   L      LSGGQ++R+ IAR L + P  ILLDEP 
Sbjct: 119 QVLDEAVEKSLKGASI--WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176

Query: 187 AGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
           + +DP++   I   +  L      +L+T  ++ +   + DR      G ++ +   +++ 
Sbjct: 177 SALDPISAGKIEETLLGLKDDYTMLLVT-RSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235

Query: 247 DN 248
            N
Sbjct: 236 MN 237


>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
           protein; Provisional.
          Length = 648

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 20/228 (8%)

Query: 24  SLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD- 78
           +LL    + + Y S    V V+KG+ L +  GE+V ++G +G+GK+T   +M  L C D 
Sbjct: 3   ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKST---LMNILGCLDK 59

Query: 79  --SGSIKIDGNDITKM-----PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYE-K 130
             SG+ ++ G D+  +        RR   G  ++ Q   +   LT  +N+  V  VY   
Sbjct: 60  PTSGTYRVAGQDVATLDADALAQLRREHFG--FIFQRYHLLSHLTAAQNV-EVPAVYAGL 116

Query: 131 DKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
           ++K+R  +   LL+   +          LSGGQ++R+ IAR+L++    IL DEP   +D
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176

Query: 191 PVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
             +  ++  ++  L  RG  ++I  H+   +    +R   I  G ++ 
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VAAQAERVIEIRDGEIVR 223


>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 77.6 bits (191), Expect = 3e-15
 Identities = 68/250 (27%), Positives = 121/250 (48%), Gaps = 37/250 (14%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM------------MTGLICADSGSI 82
           Y   + +K ++L +   E+  ++GP+G GK+TF               +TG +  +  +I
Sbjct: 22  YGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNI 81

Query: 83  KIDGNDITKMPMYRRARLGISY-----LPQEASIFRGLTVEENILAVLEVY-EKDKKKRH 136
                D+ ++    R  +G+ +      PQ  SIF      +N+     ++  K+KKK  
Sbjct: 82  LKGKVDLVEL----RKNIGMVFQKGNPFPQ--SIF------DNVAYGPRIHGTKNKKKLQ 129

Query: 137 EKLDSLLKE---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
           E ++  LK+   ++  K R H  A  LSGGQ++RL IAR+L + P  +L+DEP + +DPV
Sbjct: 130 EIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPV 189

Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVR 252
           +   I  LI  L  +   I+I  HN+ +   + D+    + G ++      ++  N D +
Sbjct: 190 STRKIEELILKLKEK-YTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQ 248

Query: 253 RL--YLGDRF 260
           R   Y+  +F
Sbjct: 249 RTLDYITGKF 258


>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 77.4 bits (190), Expect = 3e-15
 Identities = 61/237 (25%), Positives = 122/237 (51%), Gaps = 20/237 (8%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-D 88
           +L+  Y++  +++GV + +   ++  ++GP+G GK+TF   +  +       ++++G  +
Sbjct: 12  NLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM-NELESEVRVEGRVE 70

Query: 89  ITKMPMYRRARLGISYLPQEASIFRG------LTVEENI-LAVLEVYEKDKKKRHEKLDS 141
                +Y R R+ ++ L ++ S+         ++V +N+   V  V  + K +  + ++S
Sbjct: 71  FFNQNIYER-RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVES 129

Query: 142 LLKEFN----ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI 197
            LK+ +    I    H  A  LSGGQ++RL IAR+L   P  +L+DEP  G+DP+A   +
Sbjct: 130 ALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKV 189

Query: 198 HVLIRDLASRG-IGILITDHNVHEILTLIDRAYIIHA-----GGVLAHGTVQEIIDN 248
             LI+ L  R  + ++I  HN+H++  L D            G ++  G  ++I ++
Sbjct: 190 ESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNS 246


>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 279

 Score = 77.5 bits (191), Expect = 4e-15
 Identities = 62/220 (28%), Positives = 118/220 (53%), Gaps = 7/220 (3%)

Query: 31  LTKKYNS---VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN 87
           LT KY      Y +  V  +VK GE + ++G NG+GK+T   ++ GL+ A+SG I IDG+
Sbjct: 10  LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69

Query: 88  DITKMPMY-RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
            +T+  ++  R ++G+ +   +   F G TVE+++   LE      ++  E+++  L+  
Sbjct: 70  LLTEENVWDIRHKIGMVFQNPDNQ-FVGATVEDDVAFGLENKGIPHEEMKERVNEALELV 128

Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
            +  ++      LSGGQ++R+ IA ++   P  I+LDE  + +DP    ++   I+ +  
Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188

Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
              + ++   H++ E+  L DR  ++  G V +  T +E+
Sbjct: 189 DYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPREL 227


>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
            Members of this family are the PhnL protein of C-P
           lyase systems for utilization of phosphonates. These
           systems resemble phosphonatase-based systems in having a
           three component ABC transporter, where TIGR01097 is the
           permease, TIGR01098 is the phosphonates binding protein,
           and TIGR02315 is the ATP-binding cassette (ABC) protein.
           They differ, however, in having, typically, ten or more
           additional genes, many of which are believed to form a
           membrane-associated C-P lysase complex. This protein
           (PhnL) and the adjacent-encoded PhnK (TIGR02323)
           resemble transporter ATP-binding proteins but are
           suggested, based on mutatgenesis studies, to be part of
           this C-P lyase complex rather than part of a transporter
           per se.
          Length = 224

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 11/183 (6%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN----DITKMPMY 95
           V+K V L V  GE V L GP+GAGK+T    +      DSG I +       D+ +    
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82

Query: 96  RRA---RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWR 152
                 R  I Y+ Q   +   ++  E +   L      ++    +   LL   NI +  
Sbjct: 83  EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142

Query: 153 HVLAP-LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRG--- 208
             L P   SGG+++R+ IAR  ++    +LLDEP A +D      +  LI +  +RG   
Sbjct: 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202

Query: 209 IGI 211
           IGI
Sbjct: 203 IGI 205


>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
           Provisional.
          Length = 255

 Score = 76.2 bits (188), Expect = 7e-15
 Identities = 56/220 (25%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           LT  Y +  ++  + L +  G+I  L+GPNG GK+T       L+   SG++ +    I+
Sbjct: 8   LTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPIS 67

Query: 91  KMPMYRRARLGISYLPQEASIFRGLTVEENIL----AVLEVYEKDKKKRHEKLDSLLKEF 146
            +   + AR  ++ LPQ      G+TV E +       L ++ +   + + +++  +++ 
Sbjct: 68  MLSSRQLAR-RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT 126

Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
            I          LSGGQR+R  +A  L      +LLDEP   +D     ++  L+R+L +
Sbjct: 127 RINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186

Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
           +G  ++   H++++     D   ++  G V+A GT +E++
Sbjct: 187 QGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226


>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 287

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 20/226 (8%)

Query: 51  GEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMYRRARLGISYL 105
           G  V L+G  G+GK+T       L+   SG+I I G  IT     K     R ++ + + 
Sbjct: 33  GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ 92

Query: 106 PQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL----LKEFNITKWRHVLAPL-LS 160
             EA +F    +++           + + + + L  L    L E  I+K     +P  LS
Sbjct: 93  FPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147

Query: 161 GGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220
           GGQ RR+ IA  +   P  + LDEP AG+DP    ++  L +D    G  +++  HN+ +
Sbjct: 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207

Query: 221 ILTLIDRAYIIHAGGVLAHGTVQEIIDNQD-VRRLYLGD----RFA 261
           +    D   ++  G ++ H + +EI  +++ +++ YL +    RFA
Sbjct: 208 VAEYADDVLVLEHGKLIKHASPKEIFSDKEWLKKHYLDEPATSRFA 253


>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 320

 Score = 76.4 bits (188), Expect = 8e-15
 Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 42/267 (15%)

Query: 17  ENRASKDSLLSACSLTKKYNS-----VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM 71
            N  S D +L   +L   ++      +  +  +    +  +I  ++G +G+GK+T     
Sbjct: 13  PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHF 72

Query: 72  TGLICADSGSIKI---------DGNDITKMPMYR--------RARLGISYLPQEASIFRG 114
            GLI +  G+I++         + +++   P  +        R R+ + +   E  +F+ 
Sbjct: 73  NGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD 132

Query: 115 LTVEENIL---AVLEVYEKDKKKRHEK------LDSLLKEFNITKWRHVLAPL-LSGGQR 164
            T+E++I+     L V + + KK  +       LD    E +         P  LSGGQ+
Sbjct: 133 -TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERS---------PFGLSGGQK 182

Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTL 224
           RR+ IA  L   P  ++ DEP AG+DP    ++  LI D  +    + +  H +  +L +
Sbjct: 183 RRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEV 242

Query: 225 IDRAYIIHAGGVLAHGTVQEIIDNQDV 251
            D   ++  G +L  GT  EI  +Q +
Sbjct: 243 ADEVIVMDKGKILKTGTPYEIFTDQHI 269


>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
           ATP-binding protein; Provisional.
          Length = 491

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 7/209 (3%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           ++K +  V  +  V+L V+P  I  L+G NGAGK+T    + G+   DSGSI   G +I 
Sbjct: 4   ISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEID 63

Query: 91  KMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEK-----DKKKRHEKLDSLLKE 145
                     GIS + QE ++    +V +N+   L  Y       D+ K +    ++  E
Sbjct: 64  FKSSKEALENGISMVHQELNLVLQRSVMDNMW--LGRYPTKGMFVDQDKMYRDTKAIFDE 121

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
            +I          LS  Q + +EIA++       +++DEP + +    ++ +  +IR L 
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181

Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG 234
            RG GI+   H + EI  L D   I+  G
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDG 210



 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 22/224 (9%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
           ++ V   +  GEI+G+ G  GA +T     + G+    +G+I + G  I           
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323

Query: 101 GISYLPQE---ASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW------ 151
           G + + +E     I+  L +  N L    +      K    L    +  + T+W      
Sbjct: 324 GFALVTEERRSTGIYAYLDIGFNSL----ISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR 379

Query: 152 -----RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
                       LSGG ++++ I R L++ P  ++LDEP  G+D  A  +I+ LI +LA 
Sbjct: 380 VKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439

Query: 207 RGIGILITDHNVHEILTLIDRAYIIH----AGGVLAHGTVQEII 246
           +  GI+I    + E+L + DR  ++     AG V    T Q  I
Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEI 483


>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 250

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 29/251 (11%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLIC--ADSGSIKI 84
           +L   ++  +++K V+L +    +  L+GP+G GK+TF      M  LI      G I +
Sbjct: 8   NLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL 67

Query: 85  DGNDITKMPM---YRRARLGISYL---PQEASIFRGLTVEENILAVLEVY-EKDKKKRHE 137
           DG DI    +     R ++G+ +    P   SIF      +N+   L ++ E D+    E
Sbjct: 68  DGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIF------DNVAYGLRIHGEDDEDFIEE 121

Query: 138 KLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
           +++  LK   +  W  V   L      LSGGQ++RL IAR++   P  IL+DEP + +DP
Sbjct: 122 RVEESLKAAAL--WDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDP 179

Query: 192 VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
           ++ + I  LI  L      I+I  HN+ +   +         G ++  G   +I  N   
Sbjct: 180 ISTTKIEDLIHKLKED-YTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKD 238

Query: 252 RRL--YLGDRF 260
           +R   Y+  RF
Sbjct: 239 KRTEDYITGRF 249


>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 260

 Score = 75.0 bits (185), Expect = 2e-14
 Identities = 64/241 (26%), Positives = 119/241 (49%), Gaps = 19/241 (7%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLICADS--GSIKIDGNDI 89
           Y   + +K ++L +   ++   +GP+G GK+T    F  M  L       G I +DG +I
Sbjct: 23  YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82

Query: 90  --TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKE 145
              K  +   RA++G+ +  Q+ + F  +++ +NI   + ++EK  + +  E+++  L +
Sbjct: 83  LTPKQDIALLRAKVGMVF--QKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTK 139

Query: 146 ---FNITKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
              +N  K + H     LSGGQ++RL IAR +   P  +LLDEP + +DP++   I  LI
Sbjct: 140 AALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI 199

Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLGDR 259
            +L  +   ++I  HN+ +     D    ++ G ++  G    I      ++   Y+  R
Sbjct: 200 TEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTEDYITGR 258

Query: 260 F 260
           F
Sbjct: 259 F 259


>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
          Length = 1495

 Score = 75.0 bits (184), Expect = 2e-14
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 16/218 (7%)

Query: 40   VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRR 97
            V+ G+  +V P E VG++G  GAGK++    +  ++  + G I ID  D+ K  +   RR
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310

Query: 98   ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE------FNITKW 151
                +S +PQ   +F G TV  NI    E  + D  +  E+  + +K+      F +   
Sbjct: 1311 V---LSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALER--AHIKDVIDRNPFGLDAE 1364

Query: 152  RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
                    S GQR+ L +AR+L+     ++LDE  A VD    S I   IR+   +   +
Sbjct: 1365 VSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE-EFKSCTM 1423

Query: 212  LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
            L+  H ++ I+   D+  ++ +G VL + + QE++   
Sbjct: 1424 LVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460



 Score = 56.1 bits (135), Expect = 8e-09
 Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 25/212 (11%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTG-LICADSGSIKIDGNDITKMPMYRRARLGI 102
           ++L +  G +V ++G  G GKT+    M G L  A++ S+ I G+              +
Sbjct: 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGS--------------V 681

Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL-----AP 157
           +Y+PQ + IF   TV ENIL   + +E ++  R   + +L  + ++   R +        
Sbjct: 682 AYVPQVSWIFNA-TVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGV 739

Query: 158 LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASRGIGILITDH 216
            +SGGQ++R+ +AR++ S     + D+P + +D  VA       ++D       +L+T  
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVT-- 797

Query: 217 NVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           N    L L+DR  ++  G +   GT  E+  +
Sbjct: 798 NQLHFLPLMDRIILVSEGMIKEEGTFAELSKS 829


>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 259

 Score = 74.7 bits (183), Expect = 2e-14
 Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 26/248 (10%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-DITKMP 93
           YN+   ++G+ + +   ++  ++GP+G GK+TF   +   I    G +K++G  D     
Sbjct: 17  YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVEGVVDFFGQN 75

Query: 94  MY------RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK-KRHEKLDSLLKEF 146
           +Y       R R  I  + Q  + F  +++ EN+   + +  K  +    E ++S LK  
Sbjct: 76  IYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGA 134

Query: 147 NITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
            +  W+ V   L      LSGGQ++RL IAR+L   P  +L+DEP + +DP+A   +  L
Sbjct: 135 AL--WQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEEL 192

Query: 201 IRDLASRGIGILITDHNVHEILTLIDRAYIIHA-----GGVLAHGTVQEIIDNQ-DVR-R 253
           I  L S  + I I  HN+ +   + D            G ++  G   +I  N  D R R
Sbjct: 193 IHSLRSE-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRTR 251

Query: 254 LYLGDRFA 261
            Y+  RF 
Sbjct: 252 DYVSGRFG 259


>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
           YejF; Provisional.
          Length = 529

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 19/220 (8%)

Query: 39  YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL----ICADSGSIKIDGNDI----- 89
            VVK +   ++PGE +GL+G +G+GK+T     TGL    +    G I  DG  +     
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKST-----TGLALLRLINSQGEIWFDGQPLHNLNR 354

Query: 90  TKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKD--KKKRHEKLDSLLKEFN 147
            ++   R  R+ + +    +S+   L V + I   L V++      +R +++ ++++E  
Sbjct: 355 RQLLPVRH-RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVG 413

Query: 148 I-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
           +  + RH      SGGQR+R+ IAR+L+  PS I+LDEP + +D    + I  L++ L  
Sbjct: 414 LDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQ 473

Query: 207 R-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           +  +  L   H++H +  L  +  ++  G V+  G  + +
Sbjct: 474 KHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513



 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 27/227 (11%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGNDITKM-- 92
           VV  V L ++ GE + L+G +G+GK+     +  L+ +      SG I+  G  +     
Sbjct: 24  VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83

Query: 93  PMYRRARLGISYLPQEASIFRGLTVEENILAVLE--VYE--------KDKKKRHEKLDSL 142
              R  R       + A IF+   V  N L  LE  +YE        + +  R E L + 
Sbjct: 84  QTLRGVRGN-----KIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEIL-NC 137

Query: 143 LKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
           L    I +    L      LSGG+R+R+ IA +L++ P  ++ DEP   +D    + I  
Sbjct: 138 LDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQ 197

Query: 200 LIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           L+R+L     +G+L   HN+  +  L DR  ++  G  +       +
Sbjct: 198 LLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATL 244


>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 276

 Score = 74.4 bits (182), Expect = 3e-14
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 16/235 (6%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD------- 78
           ++A +LT  +    V+  V +      +  L+GP G+GKTTF   +  +   D       
Sbjct: 22  MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM--NDKVSGYRY 79

Query: 79  SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK 138
           SG + + G  I         R  +  L Q  + F  +++ +N+LA +  ++   +K    
Sbjct: 80  SGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRG 138

Query: 139 L-DSLLKE---FNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
           +  + L E   ++  K R   +P  LSGGQ++ L +AR+L   P  +LLDEP + +DP  
Sbjct: 139 VAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198

Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
              I   IR LA R + ++I  HN+ +   + DRA +   G ++  G  +++  +
Sbjct: 199 TEKIEEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252


>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 258

 Score = 74.3 bits (182), Expect = 3e-14
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 16/226 (7%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTGLI--CADSGSIKIDGNDI 89
           Y     +K V + +    +  L+GP+G GK+TF      M  LI  C   G + I+G DI
Sbjct: 22  YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81

Query: 90  TKMPM---YRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE- 145
            +  +     R  +G+ +  Q+ + F  +++ +N+     ++  +KK     +++ L+  
Sbjct: 82  YEPDVDVVELRKNVGMVF--QKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSA 138

Query: 146 --FNITKWRHVLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
             ++ T  R     L LSGGQ++RL IAR+L   P  IL DEP + +DP++ + I  LI 
Sbjct: 139 ALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIM 198

Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           +L  +   I+I  HN+ +   + D       G ++  G  ++I  N
Sbjct: 199 NL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243


>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
            Members of this protein family have two copies of the
           ABC transporter ATP-binding cassette, but are found
           outside the common ABC transporter operon structure that
           features integral membrane permease proteins and
           substrate-binding proteins encoded next to the
           ATP-binding cassette (ABC domain) protein. The member
           protein ChvD from Agrobacterium tumefaciens was
           identified as both a candidate to interact with VirB8,
           based on yeast two-hybrid analysis, and as an apparent
           regulator of VirG. The general function of this protein
           family is unknown.
          Length = 552

 Score = 73.8 bits (182), Expect = 5e-14
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 30/172 (17%)

Query: 23  DSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI 82
           D ++ A +L+K +    ++  +   + PG IVG++GPNGAGK+T F M+TG    DSG+I
Sbjct: 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379

Query: 83  KIDGNDITKMPMYRRARLGISYLPQE-ASIFRGLTVEENI---LAVLEVYEKDKKKRHEK 138
           KI   +  K          ++Y+ Q   ++    TV E I   L ++++ +++   R   
Sbjct: 380 KI--GETVK----------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR--- 424

Query: 139 LDSLLKEFNIT-----KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEP 185
             + +  FN       K        LSGG+R R+ +A++L S  + +LLDEP
Sbjct: 425 --AYVGRFNFKGSDQQK----KVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470



 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 55/201 (27%), Positives = 83/201 (41%), Gaps = 68/201 (33%)

Query: 31  LTKKYNS-VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           ++K       ++K + L   PG  +G+LG NGAGK+T   +M G+   D    + +G + 
Sbjct: 10  VSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DK---EFNG-EA 62

Query: 90  TKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKL--------- 139
              P  +     + YLPQE  +    TV EN+   V E+  KD   R  ++         
Sbjct: 63  RPAPGIK-----VGYLPQEPQLDPTKTVRENVEEGVAEI--KDALDRFNEISAKFAEPDA 115

Query: 140 --DSLLKE---------------------------------FNITKWRHVLAPLLSGGQR 164
             D+LL E                                  ++TK        LSGG+R
Sbjct: 116 DMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK--------LSGGER 167

Query: 165 RRLEIARSLVSFPSYILLDEP 185
           RR+ + R L+S P  +LLDEP
Sbjct: 168 RRVALCRLLLSKPDMLLLDEP 188


>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 269

 Score = 73.3 bits (180), Expect = 5e-14
 Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 37/228 (16%)

Query: 21  SKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM---MTGLI-- 75
           SK+ ++S  ++T  Y +   VK V   +  G++  L+GP+G GK+T       M  LI  
Sbjct: 9   SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68

Query: 76  CADSGSIKIDGNDI---TKMPMYRRARLGISYL---PQEASIFRGLTVEENIL--AVLEV 127
           C+  G +  DG D+      P+  R R+G+ +    P   SI+      ENI   A +  
Sbjct: 69  CSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIY------ENIAFGARING 122

Query: 128 YEKDKKKRHEKLDSLLKEFNITK---WRHVLAPL------LSGGQRRRLEIARSLVSFPS 178
           Y  D       +D L+ E ++ K   W      L      LSGGQ++RL IAR++   P 
Sbjct: 123 YTGD-------MDELV-ERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPE 174

Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLID 226
            IL+DEP + +DP++   I   + +L  +   I+I  HN+ + + + D
Sbjct: 175 VILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSD 221


>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 269

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 14/225 (6%)

Query: 34  KYNS--VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSI-----KIDG 86
           +Y S   + +K V   +  G+   ++G NG+GK+T   +M G+    SG I      I  
Sbjct: 16  QYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITD 75

Query: 87  NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
           ++  K+    R  +GI +   +   F G  V+ ++   LE +     + H ++   LK+ 
Sbjct: 76  DNFEKL----RKHIGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQV 130

Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-A 205
           ++ +        LSGGQ++R+ IA  L   PS I+LDE  + +DP A  ++  L+R + +
Sbjct: 131 DMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS 190

Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
              I I+   H++ E +   D   +++ G V   GT  EI D+ +
Sbjct: 191 EHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHAE 234


>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
           Provisional.
          Length = 257

 Score = 73.2 bits (180), Expect = 6e-14
 Identities = 56/215 (26%), Positives = 107/215 (49%), Gaps = 27/215 (12%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGN-- 87
           +++K+Y    V+  +DL++  G+ V ++G +G GK+T   ++ GL    +G + + G   
Sbjct: 17  AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAGTAP 75

Query: 88  -----DITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
                + T++ M++ ARL    LP +        V +N+   L +  + +    + L ++
Sbjct: 76  LAEAREDTRL-MFQDARL----LPWK-------KVIDNV--GLGLKGQWRDAALQALAAV 121

Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
                  +W       LSGGQ++R+ +AR+L+  P  +LLDEP   +D +   ++  LI 
Sbjct: 122 GLADRANEW----PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177

Query: 203 DL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
            L    G  +L+  H+V E + + DR  +I  G +
Sbjct: 178 SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212


>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 280

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 17/219 (7%)

Query: 43  GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-----R 97
            V+L ++ G     +G  G+GK+T   ++ GL     GS+++D   IT     +     R
Sbjct: 25  DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84

Query: 98  ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE----FNITKWRH 153
            ++G+ +   E+ +F     EE +L  +    ++     E+ ++L +E      I++   
Sbjct: 85  KKVGLVFQFPESQLF-----EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139

Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
              P  LSGGQ RR+ IA  L   P  ++LDEP AG+DP    ++  L + L   G+ I+
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199

Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
           +  H + ++    D  Y++  G ++  G  ++I   QDV
Sbjct: 200 LVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIF--QDV 236


>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
          Length = 1622

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 28/225 (12%)

Query: 40   VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP-MYRRA 98
            V+ G+   + P E VG++G  GAGK++    +  ++  + G I IDG DI+K   M  R 
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313

Query: 99   RLGISYLPQEASIFRGLTV--------EENILAVLEVYE----KDKKKRHEK-LDSLLKE 145
             LGI  +PQ   +F G TV        E N   + E  E    KD  +R+   LD+ + E
Sbjct: 1314 VLGI--IPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSE 1370

Query: 146  FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
                          S GQR+ L +AR+L+     ++LDE  A VD    + I   IR+  
Sbjct: 1371 AGEN---------FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE-E 1420

Query: 206  SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
             +   +LI  H ++ I+   DR  ++ AG V+   T + ++ N+ 
Sbjct: 1421 FKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEG 1464



 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 43/221 (19%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS-GSIKIDGNDITKMPMYRRARLGI 102
           ++L V  G +V ++G  G GKT+    M G +   S  S+ I G               +
Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT--------------V 681

Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL---- 158
           +Y+PQ + IF   TV +NIL     ++ ++ +R           ++T  +H L  L    
Sbjct: 682 AYVPQVSWIFNA-TVRDNILFGSP-FDPERYER---------AIDVTALQHDLDLLPGGD 730

Query: 159 ----------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP-VAISDIHVLIRDLASR 207
                     +SGGQ++R+ +AR++ S     + D+P + +D  V        I+D    
Sbjct: 731 LTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG 790

Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
              +L+T  N    L+ +DR  ++H G +   GT +E+ +N
Sbjct: 791 KTRVLVT--NQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829


>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 282

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 7/224 (3%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS---IKIDG 86
           S T   +    +  +   +  G    L+G NG+GK+T   ++ GL+  D      I +DG
Sbjct: 12  SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG 71

Query: 87  NDITKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE 145
             +T   ++  R ++GI +   +   F G TV +++   LE     + +  + +  +L +
Sbjct: 72  ITLTAKTVWDIREKVGIVFQNPDNQ-FVGATVGDDVAFGLENRAVPRPEMIKIVRDVLAD 130

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
             +  +       LSGGQ++R+ IA  L   P  I+LDE  + +DP     I  LIR L 
Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190

Query: 206 -SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
               + ++   H++ E   + D+  ++  G +LA G+  EI   
Sbjct: 191 KKNNLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233


>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 254

 Score = 72.4 bits (177), Expect = 1e-13
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 23/230 (10%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP- 93
           Y     +  +++ +    I  L+GP+G GK+TF   +  +     G IKI+GN I +   
Sbjct: 17  YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKN 75

Query: 94  --------MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY-EKDKKKRHEKLDSLLK 144
                   +  R ++G+ +  Q  + F  +++ +NI    +++  KDKKK  E ++  LK
Sbjct: 76  IYSNNFDILELRRKIGMVF--QTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLK 132

Query: 145 EFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIH 198
           +  +  W  V   L      LSGGQ++RL IAR+L   P+ IL+DEP + +DP++   I 
Sbjct: 133 KSAL--WNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190

Query: 199 VLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
            LI +L      I+I  HN+ +   + DR      G +    +  E+  N
Sbjct: 191 ELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239


>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
           protein; Provisional.
          Length = 265

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 6/231 (2%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
            LT  Y    V + + + +  G    ++GPNG GK+T    ++ L+    G + +DG  I
Sbjct: 12  QLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71

Query: 90  TKMPMYRRARLGISYLPQEASIFRGLTVEENI----LAVLEVYEKDKKKRHEKLDSLLKE 145
                   AR  I  L Q A+    +TV+E +         ++ + +K+  E +   ++ 
Sbjct: 72  QHYASKEVARR-IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA 130

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL- 204
             IT         LSGGQR+R  IA  L    + +LLDEP   +D     D+  L+ +L 
Sbjct: 131 TGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190

Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
             +G  +    H++++          +  G ++A G  +EI+  + + R+Y
Sbjct: 191 REKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIY 241


>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 290

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 18/219 (8%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-----KMPMYRRA 98
           V++ +  G  V ++G  G+GK+T    + GL+   SG++ I    IT     K     R 
Sbjct: 26  VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRK 85

Query: 99  RLGISYLPQEASIFRGLTVEENIL---AVLEVYEKDKKKRHEKLDSL--LKEFNITKWRH 153
           ++GI +   E  +F   TVE++I        V E+D K++  ++  L  L E  + +   
Sbjct: 86  KVGIVFQFPEHQLFEE-TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR--- 141

Query: 154 VLAPL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL-ASRGIGI 211
             +P  LSGGQ RR+ IA  L   P  ++LDEP AG+DP    ++  +   L   +G+  
Sbjct: 142 --SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTT 199

Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
           ++  H++ +     D+  ++H G V   GT +EI  + D
Sbjct: 200 VLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPD 238


>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
          Length = 590

 Score = 71.8 bits (177), Expect = 2e-13
 Identities = 63/223 (28%), Positives = 104/223 (46%), Gaps = 41/223 (18%)

Query: 17  ENRASKDSLLSACSLTKKYN--SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
            + + +++L+    LTKK    S+ V  G    +  GE++G++GPNG GKTTF  ++ G+
Sbjct: 332 RDESERETLVEYPDLTKKLGDFSLEVEGG---EIYEGEVIGIVGPNGIGKTTFAKLLAGV 388

Query: 75  ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134
           +  D G +  +              L ISY PQ        TVE+ + ++ +        
Sbjct: 389 LKPDEGEVDPE--------------LKISYKPQYIKPDYDGTVEDLLRSITDDLG-SSYY 433

Query: 135 RHE-----KLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
           + E     +L+ LL + N+          LSGG+ +R+ IA  L       LLDEP A +
Sbjct: 434 KSEIIKPLQLERLL-DKNVKD--------LSGGELQRVAIAACLSRDADLYLLDEPSAHL 484

Query: 190 D---PVAISDIHVLIRDLA-SRGIGILITDHNVHEILTLIDRA 228
           D    +A++     IR +A  R    L+ DH+++ I  + DR 
Sbjct: 485 DVEQRLAVAKA---IRRIAEEREATALVVDHDIYMIDYISDRL 524



 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 59/212 (27%)

Query: 39  YVVKGVDLY----VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP- 93
           Y V G  LY     K G++ G+LGPNG GKTT    +  L    SG +  +  D  + P 
Sbjct: 83  YGVNGFKLYGLPIPKEGKVTGILGPNGIGKTT---AVKIL----SGELIPNLGDYEEEPS 135

Query: 94  ------MYR----------------RARLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131
                  +R                +      Y+     +F+G  V E    +L+  + D
Sbjct: 136 WDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKG-KVRE----LLK--KVD 188

Query: 132 KKKRHEKLDSLLKEFNITKW--RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGV 189
           ++    KLD +++   +     R +    LSGG+ +R+ IA +L+    +   DEP + +
Sbjct: 189 ERG---KLDEVVERLGLENILDRDISE--LSGGELQRVAIAAALLRDADFYFFDEPTSYL 243

Query: 190 D-----PVAISDIHVLIRDLASRGIGILITDH 216
           D      VA      LIR+LA  G  +L+ +H
Sbjct: 244 DIRQRLNVAR-----LIRELA-EGKYVLVVEH 269


>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
           YbbA; Provisional.
          Length = 228

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 5/155 (3%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           ++ GV+L VK GE + L+G +G+GK+T   ++ GL    SG + + G  + +M    RA+
Sbjct: 25  ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84

Query: 100 L---GISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
           L    + ++ Q   +   L   EN+ L  L   E  ++ R+     LL++  + K    L
Sbjct: 85  LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKA-LLEQLGLGKRLDHL 143

Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
              LSGG+++R+ +AR+    P  +  DEP   +D
Sbjct: 144 PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178


>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
           regulator (CFTR).  The model describes the cystis
           fibrosis transmembrane conductor regulator (CFTR) in
           eukaryotes. The principal role of this protein is
           chloride ion conductance. The protein is predicted to
           consist of 12 transmembrane domains. Mutations or
           lesions in the genetic loci have been linked to the
           aetiology of asthma, bronchiectasis, chronic obstructive
           pulmonary disease etc. Disease-causing mutations have
           been studied by 36Cl efflux assays in vitro cell
           cultures and electrophysiology, all of which point to
           the impairment of chloride channel stability and not the
           biosynthetic processing per se.
          Length = 1490

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 43/234 (18%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           V+K +   ++ G+++ + G  G+GK++   M+ G +    G IK  G             
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ 488

Query: 100 LGISYLPQEASIFRGLTVEENIL-----------AVLEV--YEKDKKKRHEKLDSLLKEF 146
             IS+ PQ + I  G T+++NI+           +V++    E+D     EK  ++L E 
Sbjct: 489 --ISFSPQTSWIMPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEG 545

Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI--HVLIRDL 204
            IT         LSGGQR R+ +AR++       LLD PF  +D V   +I    L + +
Sbjct: 546 GIT---------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM 596

Query: 205 ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ-DVRRLYLG 257
           +++   IL+T    H  L   D+  ++H G    +GT  E+   + D   L LG
Sbjct: 597 SNK-TRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLG 647



 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 26/206 (12%)

Query: 31   LTKKYNSV--YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG-- 86
            LT KY      V++ +   V+ G+ VGLLG  G+GK+T    +  L+  + G I+IDG  
Sbjct: 1223 LTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVS 1281

Query: 87   -NDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEK------L 139
             N +T +  +R+A  G+  +PQ+  IF G T  +N    L+ YE+   +   K      L
Sbjct: 1282 WNSVT-LQTWRKA-FGV--IPQKVFIFSG-TFRKN----LDPYEQWSDEEIWKVAEEVGL 1332

Query: 140  DSLLKEFNITKWRHVLAP---LLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
             S++++F   K   VL     +LS G ++ + +ARS++S    +LLDEP A +DPV +  
Sbjct: 1333 KSVIEQFP-DKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391

Query: 197  IHVLIRDLASRGIGILITDHNVHEIL 222
            I   ++   S    IL ++H V  +L
Sbjct: 1392 IRKTLKQSFSNCTVIL-SEHRVEALL 1416


>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
           Provisional.
          Length = 501

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 21/214 (9%)

Query: 26  LSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKID 85
           LS   + K +  V  +  +    + G++  L+G NGAGK+T   +++G    D+GSI ID
Sbjct: 5   LSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64

Query: 86  GNDITKMPMYRRAR----LGISYLPQEASIFRGLTVEENI-LAVLE-----VYEKDKKKR 135
           G ++     +         G++ + QE  +   +TV EN+ L  L      V  +     
Sbjct: 65  GQEMR----FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYE 120

Query: 136 -HEKLDSLLKEFN-ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
             E+L+ L  + +  T  ++     LS GQR+ +EIA++L      I  DEP + +    
Sbjct: 121 AREQLEHLGVDIDPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175

Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDR 227
           I  +  +IR+L + G  IL   H + EI  L D 
Sbjct: 176 IEQLFRVIRELRAEGRVILYVSHRMEEIFALCDA 209



 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 63/217 (29%), Positives = 100/217 (46%), Gaps = 29/217 (13%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT-KMPMYRRA-RLG 101
           +   V+ GEIVGL G  GAG++    ++ G     +G + +DG  I  + P  R A R G
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP--RDAIRAG 329

Query: 102 ISYLPQ---EASIFRGLTVEENI------------LAVLEVYEKDKKKRHEKLDSLLKEF 146
           I   P+      I    +V +NI              +   +E +   R       ++  
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRF------IRSL 383

Query: 147 NI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
           NI T  R  L   LSGG +++  + R L      ILLDEP  G+D  A  +I+ +I +LA
Sbjct: 384 NIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA 443

Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAG---GVLAH 239
           ++G+ +L    ++ E+L + DR  ++  G   G LA 
Sbjct: 444 AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAR 480


>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
           transporter, ATP-binding protein.  Members of this
           protein family are ABC transporter ATP-binding subunits,
           part of a three-gene putative bacteriocin transport
           operon. The other subunits include another ATP-binding
           subunit (TIGR03796), which has an N-terminal propeptide
           cleavage domain, and an HlyD homolog (TIGR03794). In a
           number of genomes, a conserved propeptide sequence with
           a classic Gly-Gly motif.
          Length = 686

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 34/223 (15%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98
           ++  V L ++PGE V ++GP+G+GK+T   ++ G    +SGS+  DG D+  + +   R 
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRR 527

Query: 99  RLGI---SYLPQEASIFR------GLTVEENILAVLEV-YEKDKKKRHEKLDSLLKEFNI 148
           +LG+   +      SIF        LT++E   A       +D +     + +++ E   
Sbjct: 528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG 587

Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDLA 205
           T         LSGGQR+RL IAR+LV  P  +L DE  + +D    +   V   L R   
Sbjct: 588 T---------LSGGQRQRLLIARALVRKPRILLFDEATSALD--NRTQAIVSESLERLKV 636

Query: 206 SRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHGTVQEII 246
           +R   I+I     H + T+   DR Y++ AG V+  GT  E++
Sbjct: 637 TR---IVIA----HRLSTIRNADRIYVLDAGRVVQQGTYDELM 672


>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
          Length = 222

 Score = 70.7 bits (173), Expect = 3e-13
 Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 8/183 (4%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-----PMY 95
           ++GV  +++PGE+  L G +GAGK+T   ++ G+    +G I   G+DIT++     P  
Sbjct: 18  LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77

Query: 96  RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
           RR    I  + Q+  +    TV +N+   L +          ++ + L +  +       
Sbjct: 78  RRQ---IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF 134

Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
              LSGG+++R+ IAR++V+ P+ +L DEP   +D      I  L  +    G+ +L+  
Sbjct: 135 PIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMAT 194

Query: 216 HNV 218
           H++
Sbjct: 195 HDI 197


>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
           subunit; Provisional.
          Length = 265

 Score = 70.6 bits (173), Expect = 4e-13
 Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 10/213 (4%)

Query: 50  PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEA 109
            G++ GL+G NG+GK+T   M+        G I +D   +        AR  ++YLPQ+ 
Sbjct: 36  AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR-KVAYLPQQL 94

Query: 110 SIFRGLTVEENILAVLEVYE------KDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQ 163
               G+TV E  L  +  Y       +      EK++  +    +    H L   LSGG+
Sbjct: 95  PAAEGMTVRE--LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGE 152

Query: 164 RRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEIL 222
           R+R  IA  +      +LLDEP + +D     D+  L+  L+  RG+ ++   H+++   
Sbjct: 153 RQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212

Query: 223 TLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
              D    +  G ++A GT  E++  + + ++Y
Sbjct: 213 RYCDYLVALRGGEMIAQGTPAELMRGETLEQIY 245


>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter.  This
           model describes ABC-type bacteriocin transporter. The
           amino terminal domain (pfam03412) processes the
           N-terminal leader peptide from the bacteriocin while
           C-terminal domains resemble ABC transporter membrane
           protein and ATP-binding cassette domain. In general,
           bacteriocins are agents which are responsible for
           killing or inhibiting the closely related species or
           even different strains of the same species. Bacteriocins
           are usually encoded by bacterial plasmids. Bacteriocins
           are named after the species and hence in literature one
           encounters various names e.g., leucocin from Leuconostic
           geldium; pedicocin from Pedicoccus acidilactici; sakacin
           from Lactobacillus sake etc.
          Length = 708

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 52/222 (23%), Positives = 103/222 (46%), Gaps = 27/222 (12%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           ++  + L +K      ++G +G+GK+T   ++ G   A SG I ++G  +  +  +   +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548

Query: 100 LGISYLPQEASIFRGLTVE------------ENILAVLEVYE--KDKKKRHEKLDSLLKE 145
             I+YLPQE  IF G  +E            + I A  E+ E   D +       + L E
Sbjct: 549 F-INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607

Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
              +         +SGGQ++R+ +AR+L++    ++LDE  + +D +    I   + +L 
Sbjct: 608 EGSS---------ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658

Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
            + I I +  H +  +    D+  ++  G ++  G+  E++D
Sbjct: 659 DKTI-IFVA-HRL-SVAKQSDKIIVLDHGKIIEQGSHDELLD 697


>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 200

 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 9/193 (4%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
           +L    L   Y+   +++ +  ++  G ++ L G NGAGKTT   ++ GL+  + G I  
Sbjct: 1   MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60

Query: 85  DGNDITK-MPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
           +   I K +  Y++    + ++   + I   LT+ EN L     Y+         +  L 
Sbjct: 61  ERQSIKKDLCTYQKQ---LCFVGHRSGINPYLTLRENCL-----YDIHFSPGAVGITELC 112

Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
           + F++         LLS GQ+R++ + R  +S     LLDEP   +D +++  I   I++
Sbjct: 113 RLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172

Query: 204 LASRGIGILITDH 216
             ++G  +L+T H
Sbjct: 173 HRAKGGAVLLTSH 185


>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
           Provisional.
          Length = 268

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 18/238 (7%)

Query: 24  SLLSACSLTKKYNSV---------YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
           +LL+   L+  Y             V+  V L +K GE V LLG +G GK+T   ++ GL
Sbjct: 2   TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL 61

Query: 75  ICADSGSIKIDGNDITKMPMYRRA--RLGISYLPQEA--SIFRGLTVEENILAVLE-VYE 129
                G++   G  + K+   +R   R  I  + Q++  ++    TV E I   L  +  
Sbjct: 62  ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS 121

Query: 130 KDKKKRHEKLDSLLKEFNITKWRHV--LAPLLSGGQRRRLEIARSLVSFPSYILLDEPFA 187
            DK +R  +   +L+  ++     +    P LSGGQ +R+ +AR+L   P  ++LDE  +
Sbjct: 122 LDKAERLARASEMLRAVDLDD-SVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180

Query: 188 GVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
            +D V  + +  L++ L  + G   L   H++  +     R  ++  G ++    V +
Sbjct: 181 NLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGD 238


>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
           MsbA.  This family consists of a single polypeptide
           chain transporter in the ATP-binding cassette (ABC)
           transporter family, MsbA, which exports lipid A. It may
           also act in multidrug resistance. Lipid A, a part of
           lipopolysaccharide, is found in the outer leaflet of the
           outer membrane of most Gram-negative bacteria. Members
           of this family are restricted to the Proteobacteria
           (although lipid A is more broadly distributed) and often
           are clustered with lipid A biosynthesis genes.
          Length = 571

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 16/217 (7%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
            +  + L ++PGE V L+G +G+GK+T   ++      DSG I +DG+D+    +    R
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL-ASLR 405

Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL-DSLLKEF--NITKWRH--- 153
             ++ + Q+  +F   T+  NI A     + D+ +    L  +  ++F   +        
Sbjct: 406 RQVALVSQDVVLFND-TIANNI-AYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPI 463

Query: 154 -VLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
                LLSGGQR+RL IAR+L+     ++LDE  + +D  +   +   +  L      ++
Sbjct: 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLV 523

Query: 213 ITDHNVHEILTL--IDRAYIIHAGGVLAHGTVQEIID 247
           I     H + T+   DR  ++  G ++  GT  E++ 
Sbjct: 524 IA----HRLSTIEKADRIVVMDDGRIVERGTHNELLA 556


>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
           protein OppF; Provisional.
          Length = 331

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 18/221 (8%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP--MYRRA 98
           V GV L +  GE +G++G +G GK+TF   + GL+ A  G +   G D+  M    +R  
Sbjct: 37  VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAV 96

Query: 99  RLGISYLPQE--ASIFRGLTVEENILAVLEVY--EKDKKKRHEKLDSLLKEFN-----IT 149
           R  I  + Q+  AS+   +T+ E I   L  Y  +  +++  +++ +++ +       I 
Sbjct: 97  RSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN 156

Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRDL-ASR 207
           ++ H      SGGQ +R+ IAR+L+  P  I+ DEP + +D V+I    V L++ L    
Sbjct: 157 RYPHE----FSGGQCQRIGIARALILEPKLIICDEPVSALD-VSIQAQVVNLLQQLQREM 211

Query: 208 GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           G+ ++   H++  +  + DR  +++ G  +  GT  E+  N
Sbjct: 212 GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHN 252


>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
           Provisional.
          Length = 352

 Score = 70.3 bits (173), Expect = 5e-13
 Identities = 61/217 (28%), Positives = 96/217 (44%), Gaps = 50/217 (23%)

Query: 53  IVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---NDITK---MPMYRRARLGISYLP 106
           I  + G +GAGKT+    ++GL     G I ++G    D  K   +P  +R    I Y+ 
Sbjct: 26  ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR---RIGYVF 82

Query: 107 QEASIFRGLTVEENILAVLEVYEKDKKKRHE--------KLDSLLKEFNITKWRHVLAPL 158
           Q+A +F    V  N+      Y   K    +         ++ LL  +  +         
Sbjct: 83  QDARLFPHYKVRGNLR-----YGMAKSMVAQFDKIVALLGIEPLLDRYPGS--------- 128

Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD---------LASR-G 208
           LSGG+++R+ I R+L++ P  +L+DEP A +D         L R          LA    
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD---------LPRKRELLPYLERLAREIN 179

Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           I IL   H++ EIL L DR  ++  G V A G ++E+
Sbjct: 180 IPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEV 216


>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
           Provisional.
          Length = 588

 Score = 69.6 bits (171), Expect = 8e-13
 Identities = 51/161 (31%), Positives = 82/161 (50%), Gaps = 31/161 (19%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRRA 98
           V+ V    KPG+ V ++GP GAGK+T   ++  +    SG I IDG DI  +     RR 
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRN 410

Query: 99  RLGISYLPQEASIF-RGLTVEENIL-----AVL-EVYEKDKK--------KRHEKLDSLL 143
              I+ + Q+A +F R  ++E+NI      A   E+    ++        ++ +  D+++
Sbjct: 411 ---IAVVFQDAGLFNR--SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVV 465

Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDE 184
            E      R      LSGG+R+RL IAR+L+  P  ++LDE
Sbjct: 466 GE------R---GRQLSGGERQRLAIARALLKDPPILILDE 497


>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
           Provisional.
          Length = 286

 Score = 69.4 bits (170), Expect = 8e-13
 Identities = 53/225 (23%), Positives = 109/225 (48%), Gaps = 9/225 (4%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI---TKMPMYR- 96
           +  V+   + G+   ++G  G+GK+T    +  L+   +G++ +D   I   TK    R 
Sbjct: 23  IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82

Query: 97  -RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL 155
            R R+G+ +   E+ +F   TVE  I+   + ++ +  +       LL +   ++     
Sbjct: 83  VRKRIGMVFQFPESQLFED-TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQ 141

Query: 156 APL-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILI 213
           +P  +SGGQ R++ I   L   P  I+LDEP AG+DP +   +  L++ L       I++
Sbjct: 142 SPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201

Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII-DNQDVRRLYLG 257
             H+++E+    D   ++  G +++  + +E+  D + +   ++G
Sbjct: 202 VSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKLADWHIG 246


>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 61/243 (25%), Positives = 116/243 (47%), Gaps = 23/243 (9%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL-----ICADSGSIKIDGNDI 89
           Y     +  ++L +   +I  L+GP+G GK+TF   +  +          G + +DG +I
Sbjct: 14  YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73

Query: 90  --TKMPMYR-RARLGISYLPQEASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKE 145
               + +   R R+G+ +  Q+ + F  +++ +N+     ++  KDKK+  + ++  LK+
Sbjct: 74  YDKDVDVVELRKRVGMVF--QKPNPF-PMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK 130

Query: 146 FNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV 199
             +  W  V   L      LSGGQ++RL IAR++   P  IL+DEP + +DP++   I  
Sbjct: 131 AAL--WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188

Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRL--YLG 257
           L+ +L  +   I+I  HN+ +   + D       G ++     ++I      +    Y+ 
Sbjct: 189 LMVELK-KEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETEDYIS 247

Query: 258 DRF 260
            RF
Sbjct: 248 GRF 250


>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 271

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 23/262 (8%)

Query: 16  QENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI 75
           +   A K  +    +L   Y   + +K ++L +   E+  ++GP+G GK+T+   +  ++
Sbjct: 15  KIETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74

Query: 76  -----CADSGSIKIDGNDI--TKMPMYR-RARLGISYL---PQEASIFRGLTVEENILAV 124
                   +G I     +I      +   R  +G+ +    P   SI+  +T    I  +
Sbjct: 75  ELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGI 134

Query: 125 LEVYEKDKKKRHEKLDSLLKEFNI---TKWR-HVLAPLLSGGQRRRLEIARSLVSFPSYI 180
                KDKK   E ++  L+   I    K R H  A  LSGGQ++RL IAR L   P  I
Sbjct: 135 -----KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVI 189

Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
           L+DEP + +DP++   +  L+++L      I+I  HN+ +   + D+      G V  + 
Sbjct: 190 LMDEPTSALDPISTLKVEELVQELKKD-YSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248

Query: 241 TVQEIIDNQDVRRL--YLGDRF 260
              +I  N   +R   Y+  RF
Sbjct: 249 DTDKIFSNPSDKRTEDYITGRF 270


>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
           transporter, HlyB family.  Type I protein secretion is a
           system in some Gram-negative bacteria to export proteins
           (often proteases) across both inner and outer membranes
           to the extracellular medium. This is one of three
           proteins of the type I secretion apparatus. Targeted
           proteins are not cleaved at the N-terminus, but rather
           carry signals located toward the extreme C-terminus to
           direct type I secretion.
          Length = 694

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 57/212 (26%), Positives = 104/212 (49%), Gaps = 25/212 (11%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKM-PMYRRA 98
           V+  ++L +KPGE +G++GP+G+GK+T   ++  L     G + +DG D+    P + R 
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRR 531

Query: 99  RLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDK-KKRHEKLDSLLKEFNITKW 151
           ++G+  + QE  +F   ++ +NI           V    K    H+ +  L + +N    
Sbjct: 532 QMGV--VLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588

Query: 152 RHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL--ASRGI 209
                  LSGGQR+R+ IAR+LV  P  ++ DE  + +D    S+  +++R++    RG 
Sbjct: 589 EK--GANLSGGQRQRIAIARALVGNPRILIFDEATSALD--YESE-ALIMRNMREICRGR 643

Query: 210 GILITDH------NVHEILTLIDRAYIIHAGG 235
            ++I  H          I+ L ++  I  +G 
Sbjct: 644 TVIIIAHRLSTVRACDRIIVL-EKGQIAESGR 674


>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
          Length = 272

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 33/258 (12%)

Query: 25  LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD------ 78
           +L+A  L        +++ + L ++PG +  LLG NGAGK+T    + G +         
Sbjct: 1   MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60

Query: 79  --SGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKK--- 133
             +G + ++G  +  +   R ARL  + LPQ A      +  E +L  L  Y   ++   
Sbjct: 61  RVTGDVTLNGEPLAAIDAPRLARLR-AVLPQAAQPAFAFSAREIVL--LGRYPHARRAGA 117

Query: 134 -KRHEK--LDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSF---------PSYIL 181
               +       L     T         LSGG+  R++ AR L            P Y+L
Sbjct: 118 LTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177

Query: 182 LDEPFAGVDPVAISDIHVL---IRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVL 237
           LDEP A +D   ++  H L   +R LA    +G+L   H+ +      DR  ++  G ++
Sbjct: 178 LDEPTAALD---LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234

Query: 238 AHGTVQEIIDNQDVRRLY 255
           AHG   +++    + R Y
Sbjct: 235 AHGAPADVLTPAHIARCY 252


>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
           Provisional.
          Length = 258

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 29/249 (11%)

Query: 20  ASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADS 79
                LLS   LTK Y      + V   + PGE++G++G +G+GKTT    ++  +  D+
Sbjct: 1   MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA 60

Query: 80  GSIKIDGN-----DITKMPMYRRARLGIS---YLPQEA------SIFRGLTVEENILAVL 125
           G +          D+  +    R RL  +   ++ Q         +  G  + E ++AV 
Sbjct: 61  GEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG 120

Query: 126 EVYEKDKKKRH-----EKLDSLLKEFNITKWRHVLAP-LLSGGQRRRLEIARSLVSFPSY 179
                    RH           L+   I   R    P   SGG ++RL+IAR+LV+ P  
Sbjct: 121 A--------RHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRL 172

Query: 180 ILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
           + +DEP  G+D    + +  L+R L    G+ ++I  H++     L  R  ++  G V+ 
Sbjct: 173 VFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232

Query: 239 HGTVQEIID 247
            G   +++D
Sbjct: 233 SGLTDQVLD 241


>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
           This family represents the NikD subunit of a
           multisubunit nickel import ABC transporter complex.
           Nickel, once imported, may be used in urease and in
           certain classes of hydrogenase and superoxide dismutase.
           NikD and NikE are homologous.
          Length = 230

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 13/218 (5%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD----SGSIKIDGNDITKMPMYR 96
           V+ ++L +K GE++ L+G +G+GK+     + GL+       SG I +DG  +  +P+  
Sbjct: 2   VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSI 59

Query: 97  RARLGISYLPQEA-SIFRGL-TVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHV 154
           R R  I+ + Q   + F  L T+  + +  L    K  K+    +   L+   +     V
Sbjct: 60  RGRH-IATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEV 118

Query: 155 L---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RGIG 210
           L      LSGG  +R+ IA +L+  P +++ DEP   +D V  + +  L+R+L    G G
Sbjct: 119 LKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178

Query: 211 ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDN 248
           IL+  H++  +  + D   ++  G ++  GTV+EI  N
Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216


>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
           YbbL; Provisional.
          Length = 225

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 24/193 (12%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP--MYRR 97
           ++  +   ++ GE   + GP+G GK+T   ++  LI   SG++  +G DI+ +   +YR+
Sbjct: 22  ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81

Query: 98  ARLGISYLPQEASIFRGLTVEENILAVLEVYEK--DKKK------RHEKLDSLLKEFNIT 149
               +SY  Q  ++F G TV +N++   ++  +  D         R    D++L + NI 
Sbjct: 82  Q---VSYCAQTPTLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTK-NIA 136

Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS-RG 208
           +        LSGG+++R+ + R+L   P  +LLDE  + +D     +++ +I      + 
Sbjct: 137 E--------LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQN 188

Query: 209 IGILITDHNVHEI 221
           I +L   H+  EI
Sbjct: 189 IAVLWVTHDKDEI 201


>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 588

 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 53/226 (23%), Positives = 106/226 (46%), Gaps = 40/226 (17%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM--YRRARLG 101
           ++  +  G+ + L+GP+GAGKT+    + G +    GS+KI+G ++ ++    +R+    
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKH--- 424

Query: 102 ISYLPQEASIFRGLTVEENIL------------AVLE-VYEKDKKKRHEK-LDSLLKEFN 147
           +S++ Q   +  G T+ +N+L              LE  +  +      + LD+ + +  
Sbjct: 425 LSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483

Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL--IRDLA 205
                      LS GQ +RL +AR+L+     +LLDEP A +D  A S+  V+  +   +
Sbjct: 484 AG---------LSVGQAQRLALARALLQPCQLLLLDEPTASLD--AHSEQLVMQALNAAS 532

Query: 206 SRGIGILITDHNVHEI--LTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
            R   +++T    H++  L   D+ +++  G ++  G   E+    
Sbjct: 533 RRQTTLMVT----HQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG 574


>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 329

 Score = 66.3 bits (161), Expect = 7e-12
 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 25/232 (10%)

Query: 39  YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKIDGNDITKMP 93
           +V+  ++L +K  ++   +GP+G GK+TF   +  L       +  G I   G +     
Sbjct: 96  HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155

Query: 94  MYR---RARLGISY---LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN 147
           +     R R+G+ +    P E SIF  +        +      D+K   + ++  LK   
Sbjct: 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGI-----NDRKILEKIVEKSLKSAA 210

Query: 148 ITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLI 201
           +  W  V   L      LSGGQ++RL IAR++   P  +L+DEP + +DP+A + I  LI
Sbjct: 211 L--WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268

Query: 202 RDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
            +L  +   I+I  H++ +   + D     + G +   G  + I  +   +R
Sbjct: 269 LELKKK-YSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKR 319


>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
           subunit; Provisional.
          Length = 356

 Score = 66.4 bits (163), Expect = 7e-12
 Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 26/172 (15%)

Query: 31  LTKKY-NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           + K Y     V+KG+DL V  GE + L+GP+G GK+T   M+ GL    SG I I G  +
Sbjct: 9   VRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVV 68

Query: 90  TKM-PMYRRARLGISYLPQEASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSLLKE 145
            ++ P  R     I+ + Q  +++  ++V EN+   L +  + + + ++R  +   +L+ 
Sbjct: 69  NELEPADR----DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILE- 123

Query: 146 FNITKWRHVLAPL-------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
                    L PL       LSGGQR+R+ + R++V  P+  L DEP + +D
Sbjct: 124 ---------LEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166


>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
           Provisional.
          Length = 264

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 31/223 (13%)

Query: 17  ENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTF---FYMMTG 73
                 +++L   +L   Y S   VK V L +   +I   +GP+G GK+T    F  +  
Sbjct: 2   STLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61

Query: 74  LI--CADSGSIKIDGNDITKM---PMYRRARLGISYL---PQEASIFRGLTVEENIL--A 123
           LI      G +   G ++      P+  R R+G+ +    P   SI+      +NI   A
Sbjct: 62  LIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIY------DNIAYGA 115

Query: 124 VLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFP 177
            +  Y+ D     E ++  L++  +  W  V   L      LSGGQ++RL IAR++   P
Sbjct: 116 RINGYKGDMD---ELVERSLRQAAL--WDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP 170

Query: 178 SYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHE 220
             IL+DEP + +DP++   I  L+ +L  +   I+I  HN+ +
Sbjct: 171 EVILMDEPCSALDPISTLRIEELMHELKEQ-YTIIIVTHNMQQ 212


>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
           Reviewed.
          Length = 556

 Score = 65.5 bits (161), Expect = 1e-11
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 38/168 (22%)

Query: 31  LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
           L+K +    ++  +   + PG IVG++GPNGAGK+T F M+TG    DSG+I        
Sbjct: 330 LSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI-------- 381

Query: 91  KMPMYRRARLG----ISYLPQE-ASIFRGLTVEENI---LAVLEVYEKDKKKRHEKLDSL 142
                   ++G    ++Y+ Q   ++    TV E I   L +++V  ++   R     + 
Sbjct: 382 --------KIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR-----AY 428

Query: 143 LKEFNIT-----KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEP 185
           +  FN       K       +LSGG+R RL +A++L    + +LLDEP
Sbjct: 429 VGRFNFKGGDQQK----KVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472



 Score = 59.4 bits (145), Expect = 9e-10
 Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 67/191 (35%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           ++K + L   PG  +G+LG NGAGK+T   +M G+   D    + +G +    P  +   
Sbjct: 22  ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV---DK---EFEG-EARPAPGIK--- 71

Query: 100 LGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKL-----------DSLLKEF- 146
             + YLPQE  +    TV EN+   V EV  K    R  ++           D+L  E  
Sbjct: 72  --VGYLPQEPQLDPEKTVRENVEEGVAEV--KAALDRFNEIYAAYAEPDADFDALAAEQG 127

Query: 147 --------------------------------NITKWRHVLAPLLSGGQRRRLEIARSLV 174
                                            +TK        LSGG+RRR+ + R L+
Sbjct: 128 ELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK--------LSGGERRRVALCRLLL 179

Query: 175 SFPSYILLDEP 185
             P  +LLDEP
Sbjct: 180 EKPDMLLLDEP 190


>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
           protein SapF; Provisional.
          Length = 267

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 59/245 (24%), Positives = 121/245 (49%), Gaps = 29/245 (11%)

Query: 23  DSLLSACSLTKKY---------NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73
           ++LL   +L+K +          +V  VK +   ++ G+ + ++G NG+GK+T   M+ G
Sbjct: 2   ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61

Query: 74  LICADSGSIKIDGNDITKMPM-YRRARLGISYLPQEASIFRGLTVEENILAVLEV----- 127
           +I   SG + ID + +      YR  R  I  + Q+ S    L   + I  +L+      
Sbjct: 62  MIEPTSGELLIDDHPLHFGDYSYRSQR--IRMIFQDPS--TSLNPRQRISQILDFPLRLN 117

Query: 128 YEKDKKKRHEKLDSLLKEFNI-----TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILL 182
            + + ++R +++   L++  +     + + H+LAP    GQ++RL +AR+L+  P  I+ 
Sbjct: 118 TDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAP----GQKQRLGLARALILRPKVIIA 173

Query: 183 DEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGT 241
           DE  A +D    S +  L+ +L  + GI  +    ++  +  + D+  ++H G V+  G+
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233

Query: 242 VQEII 246
             +++
Sbjct: 234 TADVL 238


>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 251

 Score = 64.7 bits (157), Expect = 2e-11
 Identities = 66/250 (26%), Positives = 109/250 (43%), Gaps = 35/250 (14%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT------------GLICADSGSI 82
           Y+   V+K +++     +I  ++GP+G GK+T    +             G +  D+ +I
Sbjct: 14  YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENI 73

Query: 83  KIDGNDITKMPMYRRARLGISYL---PQEASIFRGLTVEENILAVL------EVYEKDKK 133
                D+  +    R R+G+ +    P   SIF  +     +L         EV EK  +
Sbjct: 74  YSPNLDVVNL----RKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLR 129

Query: 134 KRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
           +      +L  E      +  LA  LSGGQ++RL IAR L   P  IL+DEP + +DPV+
Sbjct: 130 QA-----ALWDEVKDNLHKSGLA--LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVS 182

Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
              I  L+++L  +   I I  HN+ +     D    +  G ++ +G   EI      +R
Sbjct: 183 TMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKR 241

Query: 254 L--YLGDRFA 261
              Y+  RF 
Sbjct: 242 TEDYITGRFG 251


>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 261

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 32/258 (12%)

Query: 29  CSLTKK-YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFY---MMTGLICAD--SGSI 82
           C L K  Y +   V+   + ++  EI G +GP+G GK+T       M  L+      G +
Sbjct: 11  CKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV 70

Query: 83  KIDGNDITKM---PMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKL 139
              G D+      P+  R  +G+ +  Q+ + F  +++ +N+   L +  + K    +++
Sbjct: 71  HFLGQDVYGKGVDPVVVRRYIGMVF--QQPNPF-SMSIFDNVAFGLRL-NRYKGDLGDRV 126

Query: 140 DSLLKEFNITKWRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
              L+   +  W  V   L      LSGGQ++RL IAR++ + P  +LLDEP + +DP+A
Sbjct: 127 KHALQGAAL--WDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIA 184

Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYI----IHAGGVLAH----GTVQEI 245
              +  L+ +L  +   I +  HN+ + + + D        I  G    +    G   +I
Sbjct: 185 TRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243

Query: 246 IDN--QDVRRLYLGDRFA 261
             N  + +   Y+  +F+
Sbjct: 244 FQNPREQLTSDYISGKFS 261


>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein.  This model
           describes glucan exporter ATP binding protein in
           bacteria. It belongs to the larger ABC transporter
           superfamily with the characteristic ATP binding motif.
           The In general, this protein is in some ways implicated
           in osmoregulation and suggested to participate in the
           export of glucan from the cytoplasm to periplasm. The
           cyclic beta-1,2-glucan in the bactrerial periplasmic
           space is suggested to confer the property of high
           osmolority. It has also been demonstrated that mutants
           in this loci have lost functions of virulence and
           motility. It is unclear as to how virulence and
           osmoadaptaion are related.
          Length = 585

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 11/162 (6%)

Query: 36  NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
           NS   V  V    K G+ V ++GP GAGKTT   ++  +     G I IDG DI  +   
Sbjct: 346 NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR- 404

Query: 96  RRARLGISYLPQEASIFRGLTVEENI------LAVLEVYEKDKKKR-HEKLDSLLKEFNI 148
              R  I+ + Q+A +F   ++ ENI          EVYE  K    H+ +      ++ 
Sbjct: 405 ESLRKSIATVFQDAGLF-NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDT 463

Query: 149 TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
                     LSGG+R+RL IAR+++     ++LDE  + +D
Sbjct: 464 LVGER--GNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503


>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
           protein. 
          Length = 1394

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 36/198 (18%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMM-----TGLICAD---SGSIKIDGNDITK 91
           ++  VD +VKPG +  L+G +GAGKTT   ++     TG+I           +D +    
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS---- 833

Query: 92  MPMYRRARLGISYLPQEASIFRGLTVEENIL--------AVLEVYEKDKKKRHEKLDSLL 143
              ++R+   I Y+ Q+       TV E++           +   EK      E ++ ++
Sbjct: 834 ---FQRS---IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKM-----EYVEEVI 882

Query: 144 KEFNITKWRHVLAPL----LSGGQRRRLEIARSLVSFPSYIL-LDEPFAGVDPVAISDIH 198
           K   +  +   +  +    L+  QR+RL I   LV+ P  +L LDEP +G+D      I 
Sbjct: 883 KLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSIC 942

Query: 199 VLIRDLASRGIGILITDH 216
            L+R LA  G  IL T H
Sbjct: 943 KLMRKLADHGQAILCTIH 960



 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 29/180 (16%)

Query: 33  KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI----CADSGSIKIDGND 88
           +   +  ++K +D  +KPGE+  +LG  G+G +T    +            G I  DG  
Sbjct: 69  RDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG-- 126

Query: 89  ITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI 148
           IT   + +  R  + Y  +    F  LTV E +        K  + R + +    +E   
Sbjct: 127 ITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARC--KTPQNRPDGVS---REEYA 181

Query: 149 TKWRHVLAPLL------------------SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
                V                       SGG+R+R+ IA + +        D    G+D
Sbjct: 182 KHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 17/217 (7%)

Query: 38  VYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR- 96
           V+ V+ V   + PGE + L+G +G+GK+T    +  L+ +  G I  +G  I  +   + 
Sbjct: 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL 396

Query: 97  -RARLGISYLPQE--ASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNIT--- 149
              R  I ++ Q+  AS+    TV ++I+  L V+     K    ++  LL+   +    
Sbjct: 397 QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEH 456

Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-G 208
            WR+      SGGQR+R+ IAR+L   P  I+ DE  + +D      I  L+ DL    G
Sbjct: 457 AWRYPHE--FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514

Query: 209 IGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           I  L   H+    + +++R  I H   V+  G + EI
Sbjct: 515 IAYLFISHD----MAVVER--ISHRVAVMYLGQIVEI 545



 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 53/232 (22%), Positives = 107/232 (46%), Gaps = 34/232 (14%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
           V+ +   ++ GE + ++G +G+GK+     +  L+    G ++ D     KM + RR+R 
Sbjct: 32  VRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCD-----KMLLRRRSRQ 86

Query: 101 GISYLPQEASIFRGL--------------------TVEENILAVLEVYE---KDKKKRHE 137
            I    Q A+  R +                    TV E I   + +++   +++     
Sbjct: 87  VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEA 146

Query: 138 KLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAI 194
           K   +L +  I + + +L+     LSGG R+R+ IA +L   P+ ++ DEP   +D    
Sbjct: 147 K--RMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ 204

Query: 195 SDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           + I  LI+ L     +G++   H++  +  + DR  +++ G  +  G+V++I
Sbjct: 205 AQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256


>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
           Provisional.
          Length = 582

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 22/208 (10%)

Query: 42  KGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL- 100
           + ++  +  G+ V L+G +G+GK+T   ++T     D G I +DG+D+     Y  A L 
Sbjct: 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD---YTLASLR 416

Query: 101 -GISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVL--- 155
             ++ + Q   +F   T+  NI  A  E Y +++ +   ++   + +F I K  + L   
Sbjct: 417 NQVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAM-DF-INKMDNGLDTV 473

Query: 156 ----APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGI 211
                 LLSGGQR+R+ IAR+L+     ++LDE  + +D  +   I   + +L      +
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533

Query: 212 LI-----TDHNVHEILTLIDRAYIIHAG 234
           +I     T     EIL +++   I+  G
Sbjct: 534 VIAHRLSTIEKADEIL-VVEDGEIVERG 560


>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
          Length = 1560

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 23/215 (10%)

Query: 40   VVKGVDLYVKPGEIVGLLGPNGAGKTTFF--YMMTGLICADSGSIKIDGNDITKMPMYRR 97
            V++GV   + P E VG++G  G+GK+T    +M    +C   G I+++G +I    + R 
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG--GEIRVNGREIGAYGL-RE 1381

Query: 98   ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
             R   S +PQ+  +F G TV +N+   LE    +     E +   L+E   ++   + + 
Sbjct: 1382 LRRQFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVG--LRERVASESEGIDSR 1438

Query: 158  LLSG------GQRRRLEIARSLVSFPS-YILLDEPFAGVDPVAISDIHVLIRDLASRGIG 210
            +L G      GQR+ + +AR+L+   S +IL+DE  A +DP     I   +    S    
Sbjct: 1439 VLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTV 1498

Query: 211  ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
            I I  H +H   T+     II    V+ HG V E+
Sbjct: 1499 ITIA-HRLH---TVAQYDKII----VMDHGAVAEM 1525



 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 58/220 (26%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
           V + V  G++  +LG  G+GK+T    +        G +               A   I+
Sbjct: 679 VSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------------WAERSIA 724

Query: 104 YLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL----- 158
           Y+PQ+A I    TV  NIL   E          E    L     +++    LA L     
Sbjct: 725 YVPQQAWIMNA-TVRGNILFFDE----------EDAARLADAVRVSQLEADLAQLGGGLE 773

Query: 159 ---------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV---LIRDL-- 204
                    LSGGQ+ R+ +AR++ +     LLD      DP++  D HV   ++ +   
Sbjct: 774 TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD------DPLSALDAHVGERVVEECFL 827

Query: 205 -ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQ 243
            A  G   ++  H VH ++   D  Y++     L  G V+
Sbjct: 828 GALAGKTRVLATHQVH-VVPRAD--YVV----ALGDGRVE 860


>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
           Provisional.
          Length = 549

 Score = 55.7 bits (134), Expect = 1e-08
 Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 14/212 (6%)

Query: 39  YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
           Y +  +   V  GEIVG++G NG+GK+T   ++ G+   + G++ I G+          A
Sbjct: 38  YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS---------AA 88

Query: 99  RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL 158
            + IS     + +   LT  ENI     +    K+K  E +  +++  +I K+ +     
Sbjct: 89  LIAIS-----SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKT 143

Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218
            S G + RL  A S+   P  +++DE  +  D          + +   +G  I    H++
Sbjct: 144 YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL 203

Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
            ++ +   +A  +H G V  +G ++E++D+ D
Sbjct: 204 SQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235


>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
          Length = 718

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 29/206 (14%)

Query: 43  GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI 102
           G+DL  +    + ++GPNG GK+T   +++G +   SG++            +R A++ +
Sbjct: 531 GIDLDSR----IAMVGPNGIGKSTILKLISGELQPSSGTV------------FRSAKVRM 574

Query: 103 SYLPQEASIFRGLTVEEN-ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL--L 159
           +   Q      GL +  N +L ++  +    +   +KL + L  F +T     L P+  L
Sbjct: 575 AVFSQHH--VDGLDLSSNPLLYMMRCFPGVPE---QKLRAHLGSFGVTG-NLALQPMYTL 628

Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
           SGGQ+ R+  A+     P  +LLDEP   +D   +  +  LI+ L     G+L+  H+ H
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLD---LDAVEALIQGLVLFQGGVLMVSHDEH 685

Query: 220 EILTLIDRAYIIHAGGVLA-HGTVQE 244
            I   +D  +++  G V   HGT  +
Sbjct: 686 LISGSVDELWVVSEGKVTPFHGTFHD 711



 Score = 32.5 bits (74), Expect = 0.12
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 160 SGGQRRRLEIARSLVSFPSYILLDEP 185
           SGG R R+ +AR+L   P  +LLDEP
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEP 371



 Score = 27.5 bits (61), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 51  GEIVGLLGPNGAGKTTFFYMM 71
           G   GL+G NG GKTTF   M
Sbjct: 203 GRHYGLVGRNGTGKTTFLRYM 223


>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
           V  ++L +K GE++ L+G NG+GK+T   ++TGL    SG I +DG  +T        +L
Sbjct: 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398

Query: 101 GISYLPQEASIFRGLTVEENILAVLEVYEK--DKKKRHEKLDSLLKEFNITKWRHVLAPL 158
             S +  +  +F  L   E   A   + EK  ++ K   KL+  L++  I+  +      
Sbjct: 399 -FSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE--LEDGRISNLK------ 449

Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
           LS GQ++RL +  +L      +LLDE  A  DP
Sbjct: 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDP 482


>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
           Provisional.
          Length = 330

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 60/247 (24%), Positives = 122/247 (49%), Gaps = 19/247 (7%)

Query: 17  ENRASKDSLLSACSLTKKYNS----VYVVKGVDLYVKPGEIVGLLGPNGAGKT-TFFYMM 71
             +   D+LL    L   +++    V  V  ++  ++ GE +G++G +G+GK+ T F +M
Sbjct: 4   LAQQQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALM 63

Query: 72  TGLICAD---SGSIKIDGNDITKMPMYRRARL---GISYLPQE--ASIFRGLTVEENILA 123
            GL+ A+    GS   +G +I  +P     +L    IS + Q+   S+   + V E ++ 
Sbjct: 64  -GLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLME 122

Query: 124 VLEVYEK-DKKKRHEKLDSLLKEFNI--TKWRHVLAPL-LSGGQRRRLEIARSLVSFPSY 179
           VL +++   K +  E+   +L    +   + R  + P   SGG R+R+ IA +L+  P  
Sbjct: 123 VLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 182

Query: 180 ILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITDHNVHEILTLIDRAYIIHAGGVLA 238
           ++ DEP   +D    + I  L+ +L       I++  H++  +  + D+  +++AG  + 
Sbjct: 183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242

Query: 239 HGTVQEI 245
           +G  +++
Sbjct: 243 YGNARDV 249


>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
          Length = 1470

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 66/235 (28%), Positives = 102/235 (43%), Gaps = 55/235 (23%)

Query: 6    NYLGIEMP-EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGK 64
            NY  ++MP E +E   ++D L              +++ V    +PG +  L+G +GAGK
Sbjct: 874  NYF-VDMPAEMKEQGVTEDRL-------------QLLREVTGAFRPGVLTALMGVSGAGK 919

Query: 65   TTFFYMMTGLICAD--SGSIKIDG-----------------NDITKMPMYRRARLGIS-- 103
            TT   ++ G        G I+I G                 NDI    +  R  L  S  
Sbjct: 920  TTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAF 979

Query: 104  -YLPQEASIFRGLT-VEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSG 161
              LP+E S    +  V+E    V+E+ E D  K     D+++    +T         LS 
Sbjct: 980  LRLPKEVSKEEKMMFVDE----VMELVELDNLK-----DAIVGLPGVTG--------LST 1022

Query: 162  GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216
             QR+RL IA  LV+ PS I +DEP +G+D  A + +   +R+    G  ++ T H
Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077



 Score = 31.0 bits (70), Expect = 0.29
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDI 89
           +L KK   + ++K     +KP  +  LLGP  +GKTT    + G +     S+K+ G +I
Sbjct: 171 NLAKK-TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL---DPSLKVSG-EI 225

Query: 90  TKMPMYRRARLGISYLPQEASIF 112
           T    Y   RL   ++P++ S +
Sbjct: 226 T----YNGYRLN-EFVPRKTSAY 243


>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 326

 Score = 53.6 bits (129), Expect = 5e-08
 Identities = 52/214 (24%), Positives = 104/214 (48%), Gaps = 18/214 (8%)

Query: 48  VKPGEIVGLLGPNGAGKTTFFYMMTGLI------CADSGSIKIDGNDITKMPMYRRARL- 100
           VK GE+VG++G +G+GK+     + GLI       A+   ++ +G D+ ++    R  L 
Sbjct: 30  VKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEK--LEFNGQDLQRISEKERRNLV 87

Query: 101 --GISYLPQEA--SIFRGLTVEENILAVLEVYEK-DKKKRHEKLDSLLKEFNI---TKWR 152
              ++ + Q+   S+    TV   I+  ++V++  +KK R ++   LL +  I       
Sbjct: 88  GAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL 147

Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGI 211
            V    LSGG  +R+ IA ++   P  ++ DEP   +D    + I  L+ +L  +  + +
Sbjct: 148 DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMAL 207

Query: 212 LITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           ++  H++  +     +  +++AG V+  G   +I
Sbjct: 208 VLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241


>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
          Length = 635

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 18/148 (12%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARL 100
           VK     V+ G+ + L+GPNG GKTT   +M G + ADSG I       TK        L
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG----TK--------L 382

Query: 101 GISYLPQ-EASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPL- 158
            ++Y  Q  A +    TV +N+    +    + + RH  +   L++F     R  + P+ 
Sbjct: 383 EVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRH--VLGYLQDFLFHPKR-AMTPVK 439

Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEP 185
            LSGG+R RL +AR  +   + ++LDEP
Sbjct: 440 ALSGGERNRLLLARLFLKPSNLLILDEP 467



 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 50/176 (28%)

Query: 45  DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
           +L+++  E V L+G NGAGK+T   ++ G +  D G I  + +            L ++ 
Sbjct: 23  ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD------------LIVAR 70

Query: 105 LPQ------EASIF----RGLTVEENILAVLEVY-------EKDKKKRH----EKLDSLL 143
           L Q      E +++     G+   E     L+ Y       E D  +++     KL   L
Sbjct: 71  LQQDPPRNVEGTVYDFVAEGI---EEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127

Query: 144 KEFNI----TKWRHVLAPL----------LSGGQRRRLEIARSLVSFPSYILLDEP 185
              N+     +   VLA L          LSGG  R+  + R+LVS P  +LLDEP
Sbjct: 128 DHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEP 183


>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
           protein ModF; Provisional.
          Length = 490

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 40/202 (19%)

Query: 34  KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD-----SGSIKIDGN- 87
            YN   ++  +   V PGE   ++GPNGAGK+T       LI  D     S  + + G  
Sbjct: 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL----SLITGDHPQGYSNDLTLFGRR 324

Query: 88  --------DITKMPMYRRARLGISYLPQEASIFRGLTVEENILA----VLEVYEKDKKKR 135
                   DI K   Y  + L + Y     S     +V   IL+     + +Y+    ++
Sbjct: 325 RGSGETIWDIKKHIGYVSSSLHLDY---RVST----SVRNVILSGFFDSIGIYQAVSDRQ 377

Query: 136 HEKLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
            +     L    I K R   AP   LS GQ+R   I R+LV  P+ ++LDEP  G+DP  
Sbjct: 378 QKLAQQWLDILGIDK-RTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP-- 434

Query: 194 ISDIHVLIRDLASRGIGILITD 215
                 L R L  R + +LI++
Sbjct: 435 ------LNRQLVRRFVDVLISE 450



 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)

Query: 159 LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNV 218
           LS G+ R+  + ++L+S P  ++LDEPF G+D  +   +  L+  L   GI +++  +  
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195

Query: 219 HEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
            EI   +  A      GVLA  T+ E  + +++
Sbjct: 196 DEIPDFVQFA------GVLADCTLAETGEREEI 222


>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 274

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 53/213 (24%), Positives = 93/213 (43%), Gaps = 35/213 (16%)

Query: 35  YNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPM 94
           Y     +  V L +   +I+  +GP+G GK+T       L C +  +  I G  +    +
Sbjct: 30  YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTL------LRCFNRMNDLIPGAKVEGRLL 83

Query: 95  YR------------RARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSL 142
           YR            + R  +  + Q  + F   ++ ENI      +          LD L
Sbjct: 84  YRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENI-----AFAPRANGYKGNLDEL 137

Query: 143 LKEFNITK---WRHVLAPL------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
           + E ++ +   W  V   L      LSGGQ++RL IAR++   P  +L+DEP + +DP++
Sbjct: 138 V-EDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIS 196

Query: 194 ISDIHVLIRDLASRGIGILITDHNVHEILTLID 226
              +  L  +L  +   I++T HN+ +   + D
Sbjct: 197 TRQVEELCLELKEQYTIIMVT-HNMQQASRVAD 228


>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
            (MRP).  This model describes multi drug
            resistance-associated protein (MRP) in eukaryotes. The
            multidrug resistance-associated protein is an integral
            membrane protein that causes multidrug resistance when
            overexpressed in mammalian cells. It belongs to ABC
            transporter superfamily. The protein topology and
            function was experimentally demonstrated by epitope
            tagging and immunofluorescence. Insertion of tags in the
            critical regions associated with drug efflux, abrogated
            its function. The C-terminal domain seem to highly
            conserved.
          Length = 1522

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 18/212 (8%)

Query: 39   YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRA 98
             V++ +++ +  GE VG++G  GAGK++    +  +  +  G I IDG +I K+ ++   
Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLH-DL 1358

Query: 99   RLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNIT---KWRHVL 155
            R  I+ +PQ+  +F G ++  N+    +  +++     E   + LK F      K  H  
Sbjct: 1359 RFKITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALEL--AHLKTFVSALPDKLDHEC 1415

Query: 156  A---PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
            A     LS GQR+ + +AR+L+     ++LDE  A VD    + I   IR        + 
Sbjct: 1416 AEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLT 1475

Query: 213  ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
            I     H + T++D   +I    VL  G V E
Sbjct: 1476 IA----HRLNTIMDYTRVI----VLDKGEVAE 1499



 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 30/215 (13%)

Query: 43  GVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGI 102
           G+   +  G +V ++G  G GK++    +   +    G + + G+              +
Sbjct: 656 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--------------V 701

Query: 103 SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKW--RHVLAPL-- 158
           +Y+PQ+A I +  ++ ENIL    + EK  ++  E   +LL +  I     R  +     
Sbjct: 702 AYVPQQAWI-QNDSLRENILFGKALNEKYYQQVLEAC-ALLPDLEILPSGDRTEIGEKGV 759

Query: 159 -LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI-----GIL 212
            LSGGQ++R+ +AR++ S     L D+P + VD  A    H+    +   G+      IL
Sbjct: 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD--AHVGKHIFEHVIGPEGVLKNKTRIL 817

Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIID 247
           +T H +   L  +D   ++  G +   G+ QE++ 
Sbjct: 818 VT-HGI-SYLPQVDVIIVMSGGKISEMGSYQELLQ 850


>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
          Length = 248

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 41/165 (24%), Positives = 80/165 (48%), Gaps = 17/165 (10%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL--ICADSGSIKIDGNDITKMPMYRR 97
           +++G++L V+PGE+  ++GPNG+GK+T    + G        G+++  G D+ ++    R
Sbjct: 16  ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75

Query: 98  ARLGI----SYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRH 153
           A  GI     Y  +   +     ++  + AV     ++   R +  D + ++  + K   
Sbjct: 76  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK--- 132

Query: 154 VLAPLL--------SGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
           +   LL        SGG+++R +I +  V  P   +LDE  +G+D
Sbjct: 133 MPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD 177


>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 592

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 28/224 (12%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
           V++ ++L V     V L+G  G+GK+T   ++ G      G I++DG  ++ +  +   R
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLS-HSVLR 414

Query: 100 LGISYLPQE-----ASIFRGLTV-----EENILAVLEVYEKDKKKRH--EKLDSLLKEFN 147
            G++ + Q+      +    +T+     EE +   LE  +  +  R   + L + L E  
Sbjct: 415 QGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQG 474

Query: 148 ITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR 207
                      LS GQ++ L +AR LV  P  ++LDE  A +D      I   +  +   
Sbjct: 475 NN---------LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH 525

Query: 208 GIGILITDHNVHEILTLIDRAYII--HAGGVLAHGTVQEIIDNQ 249
              ++I     H + T+++   I+  H G  +  GT Q+++  Q
Sbjct: 526 TTLVVIA----HRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565


>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
           Provisional.
          Length = 530

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 35/54 (64%)

Query: 30  SLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK 83
           +LTK +++  + K ++L ++ GE + ++G NG GKTT    + G +  DSG++K
Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVK 377



 Score = 32.2 bits (74), Expect = 0.15
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 55 GLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
          GL+G NG GK+TF  ++ G +   +G++ +D N+
Sbjct: 31 GLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE 64


>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
           Provisional.
          Length = 254

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 37/226 (16%)

Query: 41  VKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICA------------DSGSIKIDGND 88
           V GV L ++ G ++ L+G +G+GK+        L CA             +G + +DG  
Sbjct: 19  VHGVSLTLQRGRVLALVGGSGSGKS--------LTCAAALGILPAGVRQTAGRVLLDGKP 70

Query: 89  ITKMPMYRRARLGISYLPQEASIFRGLT-----VEENILAVLEVYEKDKKKRHEKLDSLL 143
           +   P   R R   + +    S F  L        E  LA+       K      L + L
Sbjct: 71  VA--PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL------GKPADDATLTAAL 122

Query: 144 KEFNITKWRHVL---APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVL 200
           +   +     VL      +SGG  +R+ IA +L+    +I+ DEP   +D VA + I  L
Sbjct: 123 EAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182

Query: 201 IRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEI 245
           +  +   R +G+L+  H++  +  L D   ++  G ++  G V+ +
Sbjct: 183 LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228


>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
           membrane\ATP-binding components; Provisional.
          Length = 569

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 49/232 (21%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYR-RA 98
            ++ V+  +KPG+++G+ GP G+GK+T   ++        G I+     +TK+ +   R+
Sbjct: 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389

Query: 99  RLGI-SYLP---------------------QEASIFRGLTVEENILAVLEVYEKDKKKRH 136
           RL + S  P                     +   + R  +V ++IL + + Y+ +  +R 
Sbjct: 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGER- 448

Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISD 196
                                +LSGGQ++R+ IAR+L+     ++LD+  + VD      
Sbjct: 449 -------------------GVMLSGGQKQRISIARALLLNAEILILDDALSAVDG---RT 486

Query: 197 IHVLIRDLASRGIG--ILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
            H ++ +L   G G  ++I+ H +   LT      ++  G +   G   ++ 
Sbjct: 487 EHQILHNLRQWGEGRTVIISAHRL-SALTEASEILVMQHGHIAQRGNHDQLA 537


>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
          Length = 1466

 Score = 48.1 bits (114), Expect = 2e-06
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 78   DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHE 137
            +SG I +DG DI    + +  R   S + QE  +F  +++ ENI    E   ++  KR  
Sbjct: 1275 NSGKILLDGVDICDYNL-KDLRNLFSIVSQEPMLF-NMSIYENIKFGKEDATREDVKRAC 1332

Query: 138  K---LDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDP 191
            K   +D  ++     K+   + P    LSGGQ++R+ IAR+L+  P  +LLDE  + +D 
Sbjct: 1333 KFAAIDEFIESLP-NKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391

Query: 192  VAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYII-------HAGGVLAHGTVQE 244
             +   I   I D+  +    +IT    H I ++     I+           V AHGT +E
Sbjct: 1392 NSEKLIEKTIVDIKDKADKTIITI--AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEE 1449

Query: 245  IIDNQD 250
            ++  QD
Sbjct: 1450 LLSVQD 1455



 Score = 36.2 bits (83), Expect = 0.008
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 156 APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD 190
           A  LSGGQ++R+ IAR+++  P  ++LDE  + +D
Sbjct: 577 ASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611


>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
           Provisional.
          Length = 638

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 48/178 (26%), Positives = 68/178 (38%), Gaps = 65/178 (36%)

Query: 48  VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
           + PG+ VGL+G NG GK+T   ++   I AD GS    GN              ++++ Q
Sbjct: 24  INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN------------WQLAWVNQ 71

Query: 108 EASIFRGLTVEENILAVLEVYEKDKKKR---------------------HEKLDSLLKEF 146
           E       T      A+  V + D++ R                     H KLD+     
Sbjct: 72  E-------TPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDA----- 119

Query: 147 NITKW--RHVLAPLL-----------------SGGQRRRLEIARSLVSFPSYILLDEP 185
            I  W  R   A LL                 SGG R RL +A++L+     +LLDEP
Sbjct: 120 -IDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176



 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 22/224 (9%)

Query: 15  FQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
           F+   +  + LL    ++  Y    ++  + L + PG  +GLLG NGAGK+T   ++ G 
Sbjct: 302 FRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361

Query: 75  ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134
           +   SG I           + +  +LG  Y  Q    F  L  +E+ L  L       ++
Sbjct: 362 LAPVSGEIG----------LAKGIKLG--YFAQHQLEF--LRADESPLQHLA--RLAPQE 405

Query: 135 RHEKLDSLLKEFNITKWRHVLAPL--LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
             +KL   L  F   +   V       SGG++ RL +A  +   P+ +LLDEP   +D  
Sbjct: 406 LEQKLRDYLGGFGF-QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD-- 462

Query: 193 AISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGV 236
            +     L   L      +++  H+ H + +  D  Y++H G V
Sbjct: 463 -LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505


>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
           Provisional.
          Length = 327

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 24/188 (12%)

Query: 23  DSLLSACSLTKKYN----------SVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMT 72
             LL A  L K Y            V  + GV   ++ G+ + ++G +G GK+T   ++T
Sbjct: 3   QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT 62

Query: 73  GLICADSGSIKIDGNDITKMP----MYRRARLGISYLPQEASIFRGLTVEENILAVLEVY 128
            +     G +   G D+ K         R ++ I +     S+     V + +   L + 
Sbjct: 63  MIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN 122

Query: 129 EK-DKKKRHEKLDSL-----LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILL 182
                 +R EK  ++     L+  +  ++ H    + SGGQR+R+ IAR+L+  P  ++ 
Sbjct: 123 TSLSAAERREKALAMMAKVGLRPEHYDRYPH----MFSGGQRQRIAIARALMLDPDVVVA 178

Query: 183 DEPFAGVD 190
           DEP + +D
Sbjct: 179 DEPVSALD 186


>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter.  This model
           describes cyclic peptide transporter in bacteria.
           Bacteria have elaborate pathways for the production of
           toxins and secondary metabolites. Many such compounds,
           including syringomycin and pyoverdine are synthesized on
           non-ribosomal templates consisting of a multienzyme
           complex. On several occasions the proteins of the
           complex and transporter protein are present on the same
           operon. Often times these compounds cross the biological
           membrane by specific transporters. Syringomycin is an
           amphipathic, cylclic lipodepsipeptide when inserted into
           host causes formation of channels, permeable to variety
           of cations. On the other hand, pyoverdine is a cyclic
           octa-peptidyl dihydroxyquinoline, which is efficient in
           sequestering iron for uptake.
          Length = 555

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 11/198 (5%)

Query: 44  VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGIS 103
           +DL +  G+IV ++G NG GK+T   +  GL     G I +DG  ++       A     
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS-------ADSRDD 413

Query: 104 YLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKE--FNITKWRHVLAPLLSG 161
           Y    ++IF    + ++++   E          + L  L       I          LS 
Sbjct: 414 YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALST 473

Query: 162 GQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHV-LIRDLASRGIGILITDHNVHE 220
           GQ++RL +  + +     +L DE  A  DP      +  L+ DL  +G  I+I  H+  +
Sbjct: 474 GQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD-DQ 532

Query: 221 ILTLIDRAYIIHAGGVLA 238
              L D+   + AG ++ 
Sbjct: 533 YFELADQIIKLAAGCIVK 550


>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
          subunit; Provisional.
          Length = 264

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 18/74 (24%), Positives = 38/74 (51%)

Query: 14 EFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTG 73
          E++  R +K+ +  A     K  + + +  + L    G+++GL+G NG+GK+T   ++ G
Sbjct: 13 EYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG 72

Query: 74 LICADSGSIKIDGN 87
           +    G +  +G 
Sbjct: 73 SLSPTVGKVDRNGE 86


>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
           Provisional.
          Length = 195

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 10/135 (7%)

Query: 50  PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEA 109
           P  I  + G NG GK++   M+ G++   SG+I     +I  +     A+   +Y+    
Sbjct: 25  PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-----AKPYCTYIGHNL 79

Query: 110 SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEI 169
            +   +TV EN+    E+Y        E L + +  F +          LS G ++ + I
Sbjct: 80  GLKLEMTVFENLKFWSEIYNSA-----ETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAI 134

Query: 170 ARSLVSFPSYILLDE 184
           AR +       LLDE
Sbjct: 135 ARLIACQSDLWLLDE 149


>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
          Length = 1809

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 39/179 (21%)

Query: 76  CADSGSIKIDGNDITKMPMYRRARLGISYLPQEASI-FRGLTVEENILAVLEV--YEKDK 132
           C   GSI    N  T +P    + LG  +LPQ   + ++G    +NI  +LE+  YE +K
Sbjct: 726 CQGLGSITTTDNR-TSIPC--PSCLGKRFLPQVLEVRYKG----KNIADILEMTAYEAEK 778

Query: 133 -----KKRHEKLDSL----LKEFNITKWRHVLAPL--LSGGQRRRLEIARSL---VSFPS 178
                   HEK+ +L    L    + +      PL  LSGG+ +RL++A  L      P+
Sbjct: 779 FFLDEPSIHEKIHALCSLGLDYLPLGR------PLSSLSGGEIQRLKLAYELLAPSKKPT 832

Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLAS---RGIGILITDHNVHEILTLIDRAYIIHAG 234
             +LDEP  G+      DI  LI  L S   +G  ++I +HN+H ++ + D  Y++  G
Sbjct: 833 LYVLDEPTTGLH---THDIKALIYVLQSLTHQGHTVVIIEHNMH-VVKVAD--YVLELG 885



 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 17/104 (16%)

Query: 159 LSGGQRRRLEIARSL---VSFPSYILLDEPFAGVDPVAISDIHVL---IRDLASRGIGIL 212
           LSGG++ R  +A+ L   +   +YIL DEP  G+ P    D H L   I+ L  +G  +L
Sbjct: 477 LSGGEQERTALAKHLGAELIGITYIL-DEPSIGLHP---QDTHKLINVIKKLRDQGNTVL 532

Query: 213 ITDHNVHEILTLIDRAYI------IHAGGVLAHGTVQEIIDNQD 250
           + +H+  ++++L DR         I  G VL +G+ +E +   D
Sbjct: 533 LVEHD-EQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSD 575



 Score = 36.7 bits (85), Expect = 0.007
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 159  LSGGQRRRLEIARSLV---SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITD 215
            LS  ++  ++IA+ L      P+  LLDE    +D    S + V +R L S G  ++  D
Sbjct: 1700 LSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759

Query: 216  HNVHEILTLIDRA-YIIHAG 234
            H+      L+ +A Y+I  G
Sbjct: 1760 HDPA----LLKQADYLIEMG 1775



 Score = 31.7 bits (72), Expect = 0.22
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 159  LSGGQRRRLEIARSLVSFPSYI--LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH 216
            LS G+  RL +A+ + S  + I  LL++P +G+ P     +  LI++L +    ++ TD 
Sbjct: 1388 LSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDR 1447

Query: 217  N 217
            +
Sbjct: 1448 S 1448


>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
           Family protei. 
          Length = 659

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 29/150 (19%)

Query: 48  VKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQ 107
           V  G  + + GPNG GK++ F ++  L     G +               A+  + Y+PQ
Sbjct: 475 VPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP------------AKGKLFYVPQ 522

Query: 108 EASIFRGLTVEENILAVLEVYE-KDKKKRHEKLDSLLKEFNITKWRHVL----------- 155
              +  G T+ + I+      + K +    + L+ +L    +T   H+L           
Sbjct: 523 RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT---HILEREGGWSAVQD 578

Query: 156 -APLLSGGQRRRLEIARSLVSFPSYILLDE 184
              +LSGG+++R+ +AR     P + +LDE
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDE 608


>gnl|CDD|162972 TIGR02680, TIGR02680, conserved hypothetical protein TIGR02680.
            Members of this protein family belong to a conserved gene
            four-gene neighborhood found sporadically in a
            phylogenetically broad range of bacteria: Nocardia
            farcinica, Symbiobacterium thermophilum, and Streptomyces
            avermitilis (Actinobacteria), Geobacillus kaustophilus
            (Firmicutes), Azoarcus sp. EbN1 and Ralstonia
            solanacearum (Betaproteobacteria). Proteins in this
            family average over 1400 amino acids in length.
          Length = 1353

 Score = 35.9 bits (83), Expect = 0.011
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 20/72 (27%)

Query: 150  KWRHVLAPL--LSGGQRRRLEIARSLVSF---------------PSYILLDEPFAGVDPV 192
            +WR +       SGG+R    +A  +  F               P  ILLDE FAGVD  
Sbjct: 1237 QWRPLTHRFGPASGGERA---LALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDN 1293

Query: 193  AISDIHVLIRDL 204
            A + +  L+R L
Sbjct: 1294 ARAHLFGLLRAL 1305


>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
           ATP-binding protein; Provisional.
          Length = 330

 Score = 35.5 bits (82), Expect = 0.014
 Identities = 51/235 (21%), Positives = 101/235 (42%), Gaps = 36/235 (15%)

Query: 41  VKGVD---LYVKPGEIVGLLGPNGAGKTTFFYMMTGL------ICADSGSIKIDGNDITK 91
           VK VD   + +  GEI GL+G +G+GK+     + G+      + AD   ++ D  D+ +
Sbjct: 20  VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD--RMRFDDIDLLR 77

Query: 92  M-PMYRRARLG--ISYLPQE--------ASIFRGLTVEENILAVLEVYEKDK-----KKR 135
           + P  RR  +G  +S + QE          + R L     +  +     K +       R
Sbjct: 78  LSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQL-----MQNIPGWTYKGRWWQRFGWR 132

Query: 136 HEKLDSLLKEFNITKWRHVLAPL---LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPV 192
             +   LL    I   +  +      L+ G+ +++ IA +L + P  ++ DEP   ++P 
Sbjct: 133 KRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPT 192

Query: 193 AISDIHVLIRDL-ASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
             + I  L+  L  +    IL+  H++  +    D+  +++ G  +     +E++
Sbjct: 193 TQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247


>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
           activities.  AAA - ATPases associated with a variety of
           cellular activities. This profile/alignment only detects
           a fraction of this vast family. The poorly conserved
           N-terminal helix is missing from the alignment.
          Length = 148

 Score = 34.7 bits (79), Expect = 0.022
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 50  PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIK-IDGNDITKMPMYRRARLGI 102
           PGE++ ++GP G+GKTT    +   +    G +  IDG DI +  + +   + +
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIV 54


>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit.  This family is based
           on the phylogenomic analysis of JA Eisen (1999, Ph.D.
           Thesis, Stanford University).
          Length = 924

 Score = 34.6 bits (80), Expect = 0.028
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 22/117 (18%)

Query: 159 LSGGQRRRLEIARSLVSFPSYIL--LDEPFAGVDPVAISDIHVLI------RDLASRGIG 210
           LSGG+ +R+ +A  + S  + +L  LDEP  G+      D   LI      RDL   G  
Sbjct: 488 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQ---RDNERLINTLKRLRDL---GNT 541

Query: 211 ILITDHNVHEILT---LID---RAYIIHAGGVLAHGTVQEIIDNQD-VRRLYLGDRF 260
           +++ +H+   I     +ID    A I H G V+A GT +EI+ N D +   YL  + 
Sbjct: 542 VIVVEHDEETIRAADYVIDIGPGAGI-HGGEVVASGTPEEILANPDSLTGQYLSGKK 597


>gnl|CDD|152834 pfam12399, BCA_ABC_TP_C, Branched-chain amino acid ATP-binding
           cassette transporter.  This domain family is found in
           bacteria, archaea and eukaryotes, and is approximately
           30 amino acids in length. The family is found in
           association with pfam00005. There is a conserved AYLG
           sequence motif. This family is the C terminal of an ATP
           dependent branched-chain amino acid transporter.
          Length = 23

 Score = 33.3 bits (78), Expect = 0.061
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 236 VLAHGTVQEIIDNQDVRRLYLG 257
           V+A GT  E+  +  V   YLG
Sbjct: 2   VIAEGTPAEVRADPAVIEAYLG 23


>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
          Length = 656

 Score = 33.3 bits (76), Expect = 0.067
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 9/44 (20%)

Query: 53  IVGLLGPNGAGKTTF------FYMMTGLICADS---GSIKIDGN 87
           +VG+ GP+GAGKT F      F     +I  D+    S  IDGN
Sbjct: 67  LVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN 110


>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
          Length = 356

 Score = 31.8 bits (73), Expect = 0.17
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 47  YVKPGEIVGLLGPNGAGKTT 66
           ++  G+ V LLG +G GK+T
Sbjct: 191 WLSGGKTVALLGSSGVGKST 210


>gnl|CDD|179009 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
           protein; Reviewed.
          Length = 782

 Score = 30.6 bits (70), Expect = 0.48
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 9/48 (18%)

Query: 174 VSFPSYILLDEPFAGVDPV-----AISDIHVLIRDLASRGIGILITDH 216
               S +L DE  AG DP      AIS    ++  L  RG  I+ T H
Sbjct: 405 ADKNSLVLFDELGAGTDPDEGAALAIS----ILEYLRKRGAKIIATTH 448


>gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein
           VexC; Provisional.
          Length = 213

 Score = 29.6 bits (66), Expect = 0.73
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 15/93 (16%)

Query: 40  VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGS-IKIDGNDITKMPMYRRA 98
           V+   D  +   E +G+L   G+GKTT   ++ GL   D G  I + G+ +         
Sbjct: 2   VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------- 53

Query: 99  RLGISYLPQEASIFRGLTVEENILAVLEVYEKD 131
                 L   + I  GLT EEN   +  +Y  D
Sbjct: 54  ------LGANSFILPGLTGEENARMMASLYGLD 80


>gnl|CDD|180463 PRK06199, PRK06199, ornithine cyclodeaminase; Validated.
          Length = 379

 Score = 29.7 bits (67), Expect = 0.88
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 46  LYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG 86
           L  K  ++VGLLGP   GKT     M   +C    +IKI G
Sbjct: 150 LARKDSKVVGLLGPGVMGKTILAAFMA--VCPGIDTIKIKG 188


>gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
          Length = 424

 Score = 29.5 bits (67), Expect = 0.92
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 48  VKPGEIVGLLGPNGAGKTT 66
           +K G +V L+GP G GKTT
Sbjct: 218 LKQGGVVALVGPTGVGKTT 236


>gnl|CDD|139425 PRK13248, PRK13248, phycoerythrobilin:ferredoxin oxidoreductase;
           Provisional.
          Length = 253

 Score = 28.7 bits (64), Expect = 1.5
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 11/53 (20%)

Query: 163 QRRRLEIARSL-VSFPSYILLD----------EPFAGVDPVAISDIHVLIRDL 204
            ++R++ AR++ ++ P+Y +L+           PF GVD V++ + H+L+ D 
Sbjct: 65  HKKRIQFARAVCINSPNYSVLNFLIIPNTIYNVPFFGVDFVSLPNSHLLVLDF 117


>gnl|CDD|178749 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
          Length = 1153

 Score = 28.7 bits (64), Expect = 1.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 53  IVGLLGPNGAGKTTFF-YMMTGLICADSGSIKIDGNDITK-MPMYRRARL 100
           +VG+ G +G GKTT    + + L      S+ ID   I+K M +Y  A  
Sbjct: 209 MVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANP 258


>gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF;
           Provisional.
          Length = 559

 Score = 28.4 bits (63), Expect = 1.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)

Query: 51  GEIVGLLGPNGAGKTT 66
           G ++ L+GP GAGKTT
Sbjct: 350 GGVIALVGPTGAGKTT 365


>gnl|CDD|162206 TIGR01110, mdcA, malonate decarboxylase, alpha subunit.  This model
           describes malonate decarboxylase alpha subunit, from
           both the water-soluble form as found in Klebsiella
           pneumoniae and the form couple to sodium ion pumping in
           Malonomonas rubra. Malonate decarboxylase Na+ pump is
           the paradigm of the family of Na+ transport
           decarboxylases. Essentially, it couples the energy
           derived from decarboxylation of a carboxylic acid
           substrate to move Na+ ion across the bilayer. Functional
           malonate decarboylase is a multi subunit protein. The
           alpha subunit enzymatically performs the transfer of
           malonate (substrate) to an acyl carrier protein subunit
           for subsequent decarboxylation, hence the name:
           acetyl-S-acyl carrier protein:malonate carrier
           protein-SH transferase.
          Length = 543

 Score = 28.7 bits (64), Expect = 1.8
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 9/50 (18%)

Query: 166 RLEIARSLVSF------PSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
           R++I  S V F      P YI   EP    DP  I+D+ VL+  +A +GI
Sbjct: 190 RVDIPASWVDFVIESPKPFYI---EPLFTRDPANITDVQVLMAMMAIKGI 236


>gnl|CDD|117805 pfam09259, Fve, Fungal immunomodulatory protein Fve.  Fve is a
          major fruiting body protein from Flammulina velutipes,
          a mushroom possessing immunomodulatory activity. It
          stimulates lymphocyte mitogenesis, suppresses systemic
          anaphylaxis reactions and oedema, enhances
          transcription of IL-2, IFN-gamma and TNF-alpha, and
          haemagglutinates red blood cells. It appears to be a
          lectin with specificity for complex cell-surface
          carbohydrates. Fve adopts a tertiary structure
          consisting of an immunoglobulin-like beta-sandwich,
          with seven strands arranged in two beta sheets, in a
          Greek-key topology. It forms a non-covalently linked
          homodimer containing no Cys, His or Met residues;
          dimerization occurs by 3-D domain swapping of the
          N-terminal helices and is stabilized predominantly by
          hydrophobic interactions.
          Length = 111

 Score = 28.5 bits (63), Expect = 2.0
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 33 KKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
          K Y+    V G DL V+P   V    P+G  K  F     G   AD+ +I++
Sbjct: 45 KAYSYRVAVNGRDLGVEPNFAV---EPDGGQKINFLEYNKGYGIADTKTIQV 93


>gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated.
          Length = 822

 Score = 28.0 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 200 LIRDLASRGIGILITDHNVHEILTLIDRAYII 231
           LI+++  RG+G   T H++  I  L  R Y+I
Sbjct: 482 LIKEMEKRGLGTKATRHDI--IEKLYKRGYVI 511


>gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD.
          This model describes the DndB protein encoded by an
          operon associated with a sulfur-containing modification
          to DNA. The operon is sporadically distributed in
          bacteria, much like some restriction enzyme operons.
          DndD is described as a putative ATPase. The small
          number of examples known so far include species from
          among the Firmicutes, Actinomycetes, Proteobacteria,
          and Cyanobacteria.
          Length = 650

 Score = 28.1 bits (63), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 44 VDLYVKPGEIVGLLGP-NGAGKTTF 67
           DL     + + L+G  NGAGKTT 
Sbjct: 20 FDLSPSSPKPIILIGGLNGAGKTTL 44


>gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase.
          Length = 347

 Score = 27.8 bits (62), Expect = 3.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 50  PGEIVGLLGPNGAGKTTFFYMMTGLICAD---SGSIKID 85
           P  ++G+  P G GKTT  + +  L  A    + S+ ID
Sbjct: 99  PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSID 137


>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
          domain-containing protein; Reviewed.
          Length = 229

 Score = 27.6 bits (62), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 46 LYVKPGE--IVGLLGPNGAGKTTF 67
          L  +P    IVG+ GP GAGK+T 
Sbjct: 26 LQAEPQRRTIVGIAGPPGAGKSTL 49


>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
          bacterial type.  SMC (structural maintenance of
          chromosomes) proteins bind DNA and act in organizing
          and segregating chromosomes for partition. SMC proteins
          are found in bacteria, archaea, and eukaryotes. This
          family represents the SMC protein of most bacteria. The
          smc gene is often associated with scpB (TIGR00281) and
          scpA genes, where scp stands for segregation and
          condensation protein. SMC was shown (in Caulobacter
          crescentus) to be induced early in S phase but present
          and bound to DNA throughout the cell cycle.
          Length = 1179

 Score = 27.7 bits (62), Expect = 3.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 50 PGEIVGLLGPNGAGKT 65
             I G++GPNG GK+
Sbjct: 22 DKGITGIVGPNGCGKS 37


>gnl|CDD|149646 pfam08659, KR, KR domain.  This enzymatic domain is part of
           bacterial polyketide synthases and catalyses the first
           step in the reductive modification of the beta-carbonyl
           centres in the growing polyketide chain. It uses NADPH
           to reduce the keto group to a hydroxy group.
          Length = 181

 Score = 27.1 bits (61), Expect = 4.5
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 16/90 (17%)

Query: 167 LEIARSLV-SFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL-----ITDHN-VH 219
           LE+AR L      +++L       DP A +    L+ +L +RG  +      ++D + V 
Sbjct: 14  LELARWLAERGARHLVLLSRSGAPDPEAEA----LLAELEARGAEVTVVACDVSDRDAVA 69

Query: 220 EILTLIDRAY-----IIHAGGVLAHGTVQE 244
            +L  I         +IHA GVL    +  
Sbjct: 70  ALLAEIRADGPPLRGVIHAAGVLRDALLAN 99


>gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed.
          Length = 772

 Score = 27.0 bits (60), Expect = 4.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 54 VGLLGPNGAGKTTFFYMMTG 73
          +GL+G   +GKTT F  +TG
Sbjct: 6  IGLIGNPNSGKTTLFNQLTG 25


>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed.
          Length = 437

 Score = 27.0 bits (60), Expect = 5.1
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 9/47 (19%)

Query: 80  GSIKIDGNDITKMPMYRRAR------LGISYL-PQEASIFRGLTVEE 119
           GS+ ID  ++T       AR        ISYL PQE   FRG T+ E
Sbjct: 26  GSVVID--EVTIEQCIGGARDIRSLVTDISYLDPQEGIRFRGKTIPE 70


>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
          Length = 687

 Score = 26.8 bits (60), Expect = 5.6
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 23/76 (30%)

Query: 54  VGLLGPNGAGKTT-----FFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQE 108
           +G+L    AGKTT      FY  TG I    G ++ DG  +T             ++PQE
Sbjct: 11  IGILAHIDAGKTTLTERILFY--TGKIHK-MGEVE-DGTTVT------------DWMPQE 54

Query: 109 ASIFRGLTVEENILAV 124
               RG+T+E    + 
Sbjct: 55  QE--RGITIESAATSC 68


>gnl|CDD|169652 PRK09087, PRK09087, hypothetical protein; Validated.
          Length = 226

 Score = 26.9 bits (60), Expect = 5.7
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 50 PGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT 90
          P  +V L GP G+GKT        +    S ++ I  N+I 
Sbjct: 43 PSPVVVLAGPVGSGKTHL----ASIWREKSDALLIHPNEIG 79


>gnl|CDD|179887 PRK04863, mukB, cell division protein MukB; Provisional.
          Length = 1486

 Score = 26.5 bits (59), Expect = 6.9
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 7/27 (25%)

Query: 53 IVGLLGPNGAGKTT----FFYMMTGLI 75
          +  L G NGAGK+T    F   +T LI
Sbjct: 29 VTTLSGGNGAGKSTTMAAF---VTALI 52


>gnl|CDD|172383 PRK13862, PRK13862, putative crown gall tumor protein VirC2;
           Provisional.
          Length = 201

 Score = 26.4 bits (58), Expect = 7.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 157 PLLSGGQRRRLEIARSLVSFPS 178
           P LS G+ RRL  AR  +  P 
Sbjct: 6   PALSVGEARRLAAARPEIVHPE 27


>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
          Length = 361

 Score = 26.7 bits (60), Expect = 7.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 53 IVGLLGPNGAGKT 65
          +  L+G NG GKT
Sbjct: 25 VNVLVGENGQGKT 37


>gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. 
          Length = 282

 Score = 26.5 bits (59), Expect = 7.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 51  GEIVGLLGPNGAGKTT 66
           G ++ L+GP G GKTT
Sbjct: 194 GGVIALVGPTGVGKTT 209


>gnl|CDD|182554 PRK10565, PRK10565, putative carbohydrate kinase; Provisional.
          Length = 508

 Score = 26.6 bits (59), Expect = 7.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 23  DSLLSACSLTKKYNSVYVVKG 43
           D LLSA  L K+Y  V V+KG
Sbjct: 393 DRLLSARRLVKRYGGVVVLKG 413


>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
          Length = 943

 Score = 26.2 bits (59), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 231 IHAGGVLAHGTVQEIIDNQD 250
           +H G V+A GT +EI+ N +
Sbjct: 569 VHGGEVVASGTPEEIMKNPN 588


>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein.  Function of MutS2 is
           unknown. It should not be considered a DNA mismatch
           repair protein. It is likely a DNA mismatch binding
           protein of unknown cellular function.
          Length = 771

 Score = 26.3 bits (58), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 121 ILAVLEVYEKDKKKRHEKLDSLLKEFNITK 150
           ++  L   EK+ ++++E L+ LLKE    K
Sbjct: 516 LIEKLSALEKELEQKNEHLEKLLKEQEKLK 545


>gnl|CDD|129694 TIGR00606, rad50, rad50.  This family is based on the
          phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
          Stanford University).
          Length = 1311

 Score = 26.2 bits (57), Expect = 8.7
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 4/22 (18%)

Query: 56 LLGPNGAGKTTFF----YMMTG 73
          L+GPNGAGKTT      Y+ TG
Sbjct: 33 LVGPNGAGKTTIIECLKYICTG 54


>gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional.
          Length = 767

 Score = 26.3 bits (58), Expect = 9.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 51  GEIVGLLGPNGAGKTT 66
           G ++ L+GP G GKTT
Sbjct: 185 GGVLALVGPTGVGKTT 200


>gnl|CDD|179166 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.
          Length = 513

 Score = 26.2 bits (59), Expect = 9.1
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 231 IHAGGVLAHGTVQEIIDNQDV----RRLYLG 257
           IH  GVL +    EI+  + V     RL LG
Sbjct: 299 IHQDGVLKNRETYEIMTPESVGLKANRLVLG 329


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.141    0.406 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,428,543
Number of extensions: 294254
Number of successful extensions: 1470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1204
Number of HSP's successfully gapped: 343
Length of query: 262
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,006,537
Effective search space: 681111290
Effective search space used: 681111290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.5 bits)