BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(262 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 534 bits (1376), Expect = e-154, Method: Compositional matrix adjust.
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MKSIRNYLGIEMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPN 60
MKSIRNYLGIEMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPN
Sbjct: 1 MKSIRNYLGIEMPEFQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPN 60
Query: 61 GAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEEN 120
GAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEEN
Sbjct: 61 GAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEEN 120
Query: 121 ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYI 180
ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYI
Sbjct: 121 ILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYI 180
Query: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG
Sbjct: 181 LLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHG 240
Query: 241 TVQEIIDNQDVRRLYLGDRFAF 262
TVQEIIDNQDVRRLYLGDRFAF
Sbjct: 241 TVQEIIDNQDVRRLYLGDRFAF 262
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 99.4 bits (246), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 108/214 (50%), Gaps = 10/214 (4%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
+ + SL K ++ V+ V+ V GEIVGLLG +G+GK+T ++ GL+ SG +
Sbjct: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76
Query: 85 DGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLK 144
G I P IS + Q ++F LTV EN+ L+ DK++R ++ S +
Sbjct: 77 KGKKIKDPPK------DISVVFQTFALFPWLTVLENVELGLKAKGIDKEERRKRALSAID 130
Query: 145 EFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDL 204
+ + +SGG +R+ AR+ V FPS +L+DEPF+ +D + ++ + DL
Sbjct: 131 LIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLTAENLRTDLIDL 190
Query: 205 ASRG----IGILITDHNVHEILTLIDRAYIIHAG 234
G +L+ HN+ E + + DR + +
Sbjct: 191 WIEGRLPIESMLMVTHNIEEAVLMCDRVLVFSSN 224
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 95.5 bits (236), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 107/204 (52%), Gaps = 4/204 (1%)
Query: 45 DLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRARLGISY 104
D V E + +LGP+GAGK+T +M G GSI ++G + T+ +R +S
Sbjct: 19 DFQVNKAERIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRP---LSI 75
Query: 105 LPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQR 164
L QE ++F LTV +NI + + +H ++ +L++ + + + +SGGQR
Sbjct: 76 LFQENNLFSHLTVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQMSGGQR 135
Query: 165 RRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA-SRGIGILITDHNVHEILT 223
+R+ +AR L+ +LLDEPFA DP +I L++ + R + +L+ HN+ + +
Sbjct: 136 QRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQ 195
Query: 224 LIDRAYIIHAGGVLAHGTVQEIID 247
+ R +I G ++ G +++
Sbjct: 196 IATRFIVIAGGQIVYDGDPDRLMN 219
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 94.0 bits (232), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 19/240 (7%)
Query: 17 ENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLIC 76
N S L+S + + N +++ ++ +KP EIV L+GPNG+GK+T ++TG+I
Sbjct: 2 SNALSITPLISLSNTSFHKNGYKILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIK 61
Query: 77 ADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRH 136
GS+K R +L + Y+PQ+ +I L L+++
Sbjct: 62 PTIGSVK------------RHPQLIVGYVPQKVTIENTLP-----LSLMRFMTLSMPSSR 104
Query: 137 EKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVD-PVAIS 195
+ + +L N+ + LSGG+ +R +A++L+ P+ ++LDEP G+D P +S
Sbjct: 105 DDVLQILDRVNLIGKYNRNIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELS 164
Query: 196 DIHVLIRDLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
++ S G GIL+ HN+H ++ D ++ + G Q I DN + RL+
Sbjct: 165 LYELITSVRQSTGCGILLISHNLHMVMASTDTVICLN-NRICYQGPPQTIKDNAEYIRLF 223
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 92.0 bits (227), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 113/215 (52%), Gaps = 25/215 (11%)
Query: 51 GEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDIT----KMPMYRRARLGISYLP 106
GEI+G++G +G GK+ + GLI SG +K+ G + K A+LG+ +
Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLF-- 96
Query: 107 QEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNI-TKWRHV--------LAP 157
Q ++F +TV+ENI + K H L + L E + TK V L P
Sbjct: 97 QHGALFSSMTVQENISMPI--------KEHLNLPADLIEHIVHTKIAIVGLPPETANLMP 148
Query: 158 L-LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDI-HVLIRDLASRGIGILITD 215
LSGG +R+ +AR+L P + LDEP +G+DP+A + +LI+ S G+ + +
Sbjct: 149 FQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMIT 208
Query: 216 HNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQD 250
H+++ +++ +R +I G++ GT+ +I+D+ D
Sbjct: 209 HDLNNLISTCNRVAVIQKKGIMKEGTISDIVDSND 243
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 90.9 bits (224), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 11/226 (4%)
Query: 36 NSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMY 95
N ++ V+L++ I L+G NGAGK+T F + GLI D GSI I +
Sbjct: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENA--- 79
Query: 96 RRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKR------HEKLDSLLKEFNIT 149
+A L I+Y+PQ SI + + ++ Y+ +R + + L+ ++
Sbjct: 80 LKADL-IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS 138
Query: 150 KWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGI 209
R LS GQ++R+ +AR+L I++DEPFA +D ++ L++ L + I
Sbjct: 139 SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI 198
Query: 210 GILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRRLY 255
IL++ HN++ I + DR I VLA G +I + ++++ +
Sbjct: 199 MILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNIQKTF 243
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 90.9 bits (224), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP 93
+Y V V +L VK GEI+ L+G +GAGK+T + GL G + +D + P
Sbjct: 38 EYGMVSAVIKANLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNP 97
Query: 94 ------MYRRARL-GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEF 146
+ R+ R+ +S + Q+ ++ TV N+ LE + +R ++ L+
Sbjct: 98 YAADANVLRKLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIV 157
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA----ISDIHVLIR 202
N+TKW +LSGG ++R+ AR+ + +L+DEPF+ +DP+ ++ L R
Sbjct: 158 NLTKWADCKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQR 217
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEII 246
L I+ H+++E L +R I+ G ++ GT QEII
Sbjct: 218 KLKK---TIVFVSHDINEAFRLGNRIAIMEGGRIIQCGTPQEII 258
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 81.3 bits (199), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 104/199 (52%), Gaps = 5/199 (2%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V++ V L +K GEIV L+ P+G GK+T ++ L D G++ I K+ +++
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84
Query: 100 L---GISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLA 156
L I ++ QE + +V ENI+ + + K +++ LL +++++ + +
Sbjct: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAMDLLSYMDMSQYANRRS 144
Query: 157 PLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASR-GIGILITD 215
+SGG+++R+ I R++ + P IL DEP +D + +++ L R G+ LI
Sbjct: 145 SDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIAT 204
Query: 216 HNVHEILTLIDRAYIIHAG 234
HN H++ + +DR I G
Sbjct: 205 HN-HDLASQMDRQITIRDG 222
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 80.9 bits (198), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 32/212 (15%)
Query: 44 VDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLI-----CADSGSIKIDGNDI--TKMPMYR 96
++L + + L+GP+G GK+TF + + C +G I +DG +I + + + R
Sbjct: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
Query: 97 -RARLGISYL---PQEASIFRGLTV----------EENILAVLEVYEKDKKKRHEKLDSL 142
RAR+G+ + P SI+ + + +I ++E+ K +E D L
Sbjct: 85 LRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVKDRL 144
Query: 143 LKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIR 202
+ A LLSGGQ++R+ IAR+L P IL+DEP + +DP+A + + LI
Sbjct: 145 FHD----------ASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIH 194
Query: 203 DLASRGIGILITDHNVHEILTLIDRAYIIHAG 234
+L + I+I H++ + + RA + H G
Sbjct: 195 EL-RESLTIVIVTHSMQQAARVSQRAAMFHMG 225
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 257
Score = 78.2 bits (191), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 8/228 (3%)
Query: 31 LTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG---- 86
L K Y + + ++ ++L V GE V + GP+G+GK+T + + +G I I+G
Sbjct: 23 LNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIINGIPLN 82
Query: 87 NDITKMPMYRRARLGISYLPQEASIFRGLTVEENI-LAVLEVYEKDKKKRHEKLDSLLKE 145
+DI + RR +G+ + Q ++F L+V EN L + V + KK E L +
Sbjct: 83 DDIRNIHEVRRD-VGMVF--QHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAMHYLNK 139
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
I H + LLSGG+ +R IARSL P +L DEP + +DP + ++ ++ +LA
Sbjct: 140 VKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELA 199
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
G+ ++ H + + DR + G ++ + +E +N R
Sbjct: 200 EEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHER 247
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 73.9 bits (180), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84
++ A ++K YN ++ + + PG IVG++GPNGAGKTT F M+TG DSG+I +
Sbjct: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376
Query: 85 DGNDITKMPMYRRARLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143
G + +SY+ Q S+ TV E+I ++ + + + + +
Sbjct: 377 -GETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424
Query: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
F + + LSGGQR R+ +A+ L S + ILLDEP +D +S + + +
Sbjct: 425 FNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483
Query: 204 LASRGIGILIT 214
A G ++I+
Sbjct: 484 FA--GCAVIIS 492
Score = 50.8 bits (120), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 50/235 (21%)
Query: 29 CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88
L+K + S V+ ++L P +G+LGPNGAGK+T +M G+ +G
Sbjct: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE------- 62
Query: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENIL-------AVLEVY-----------EK 130
+ + YLPQE + TV+ENI+ A+L+ Y E+
Sbjct: 63 -----AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117
Query: 131 DKKKRHEKLDS-----LLKEFNIT-KWRHVLA-----PLLSGGQRRRLEIARSLVSFPSY 179
+ K + +DS L E + + H A LSGG++RR+ + + L+S P
Sbjct: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177
Query: 180 ILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH------NVHEILTLIDRA 228
+LLDEP +D I+ + +R+ + +L+ H NV + +DR
Sbjct: 178 LLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRG 229
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 69.3 bits (168), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 15 FQENRASKDSLLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGL 74
Q ++S +L A +TK+Y+ VVK L + GE +G++GPNGAGKTT ++TG
Sbjct: 274 LQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGK 333
Query: 75 ICADSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKK 134
I D G I + N K+ + R I AS G + + ++ +
Sbjct: 334 IKPDCGFITLGTN--LKIATIDQKREDIDPDKSLASYLTGSSGDSLMVR--------GES 383
Query: 135 RHEKLDSLLKEFNI-TKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVA 193
RH + +K+F H L LSGG++ R +AR L +++++DEP +D
Sbjct: 384 RH--VAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLD--- 438
Query: 194 ISDIHVLIRDLASRGIGILITDHN 217
+ L R + ILI H+
Sbjct: 439 FETLDFLERTITQLQGTILIVSHD 462
Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+++ V L +KP E + L+G NG+GK+T + G+ SG++ ++ +R
Sbjct: 20 LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVF----------LHSSSR 69
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLL 159
LG YL Q + T+ + I + KD + SLLK+FN+ + + L
Sbjct: 70 LG--YLEQNPDLSHFSTISQYIDDTI----KDTIEAPYSPYSLLKKFNLREQDRIEN--L 121
Query: 160 SGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVH 219
S GQ R + + + L+S P ++LDEP +D IH + ++L ++ H+
Sbjct: 122 SVGQTRCVALMKMLISRPDILILDEPTNHLD---FRTIHWMEQELLKINSALIFVSHDRR 178
Query: 220 EILTL------IDRAYIIH 232
+ TL +DR + H
Sbjct: 179 FLETLSTTTVWLDRGCLHH 197
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 68.9 bits (167), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 103/199 (51%), Gaps = 15/199 (7%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
V+ G++L K G++ L+GP+G+GK+T ++ + SGSI+IDG +I + + R
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT-FSSLR 426
Query: 100 LGISYLPQEASIFRGLTVEENIL------AVLEVYEKDKKKR-HEKLDSLLKEFNITKWR 152
ISY+ Q+ +F TV NIL E+ E K H+ + SL + ++
Sbjct: 427 ERISYVGQDVFLFSN-TVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDTYVGE 485
Query: 153 HVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
+ LSGGQ++R+ IAR+++ ++LDE + +D + L+R SR +
Sbjct: 486 N--GSNLSGGQKQRIAIARAMLRDGHILVLDEATSALD----THTENLVRQALSRLMQGR 539
Query: 213 ITDHNVHEILTLIDRAYII 231
T H I T+I+ +II
Sbjct: 540 TTIVIAHRISTIIEADHII 558
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 65.1 bits (157), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 24/219 (10%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGNDITKMPMYRR 97
+++G++L V+P E+V ++GPNG+GK+T Y+++G + +G I G I + R
Sbjct: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
Query: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
A GI Q G+ + + + L + +K R+EK + L+ +F K R + A
Sbjct: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIAL---NEQRKARNEK-ELLIPDFT-RKVRKITAE 132
Query: 158 L--------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
L SGG+++ EI + + PS +LDE +G+D A+ +
Sbjct: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
Query: 204 LASRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHG 240
L S+ LI H +L I D +++H G ++ G
Sbjct: 193 LRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 60.1 bits (144), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 33/219 (15%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
+ KG+ + P + L+G +G GK+T ++ L G I IDG DI K+ R
Sbjct: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGGIITIDGQDIKKITK-ESLR 430
Query: 100 LGISYLPQEASIFRGLTVEENIL------------AVLEVYEKDK--KKRHEKLDSLLKE 145
I +PQ+ +F T+ NIL A +EV + K D+++ E
Sbjct: 431 QTIGIIPQDTILFND-TLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLPNGYDTVVGE 489
Query: 146 FNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLA 205
+ LSGG+++R+ IAR+++ P I+ DE + +D + I + L+
Sbjct: 490 RGLK---------LSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITERHIQTALATLS 540
Query: 206 SRGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQE 244
++I H + T+ D II V GTV E
Sbjct: 541 KNRTTLVIA----HRLSTITDADNII----VFDQGTVVE 571
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 60.1 bits (144), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 11/216 (5%)
Query: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMPMYRRAR 99
++K V+ V+PGE + L+G +GAGKT+ F ++ SGS++I+G D+ + + R
Sbjct: 305 ILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEIRR 364
Query: 100 LGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFN---ITKWRHVL- 155
I+++PQ I +V +NI A+ + K+ ++ + + EF + +L
Sbjct: 365 F-IAWVPQHP-IMIAASVYDNI-AIGCPHATRKEIQNAAMLAQAHEFIGCLENGYDTILG 421
Query: 156 --APLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGILI 213
A LS GQ +R+ IAR+++ +LLDE + +D I ++R+ RG +
Sbjct: 422 DGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQKIWKVLRE-QRRGRTTIF 480
Query: 214 TDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQ 249
H + I D +++H ++ G +E++
Sbjct: 481 ASHRLSAIQDA-DMVFVLHDQVIVEKGVHEELLKKS 515
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 50.4 bits (119), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 14/225 (6%)
Query: 34 KYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGNDITKMP 93
K S + + + + G + GP+G GK+ F M GL+ + G+I I++
Sbjct: 341 KKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQISR-D 399
Query: 94 MYRRARLGISYLPQEASIFRGLTVEENIL-----AVLEVYEKDKK--KRHEKLDSLLKEF 146
+ I YL Q S+F +++ ENI+ L + +K K HE + SL +
Sbjct: 400 FIEKFSAQIGYLSQHCSLF-PISITENIILSHDQNSLHIAQKTAKIVGCHEDILSLKNGY 458
Query: 147 NITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRDLAS 206
T + + +++ ++R + + P+ +L+DEP +D A ++ + L++
Sbjct: 459 QTT----YCSDEIPYNIVQKIRLSRIIANNPAILLMDEPLYHLDNEAKNNFYTLLKQFKE 514
Query: 207 RGIGILITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDV 251
I+I H+ I+++ D + I H G Q+I V
Sbjct: 515 NKKTIVIISHD-PTIISMSDFSLIFHPIQGSLFGLTQDIFKFNTV 558
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 37.0 bits (84), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 156 APLLSGGQRRRLEIARSL---VSFPSYILLDEPFAGVDPVAISDIHVLIRDLASRGIGIL 212
A LSGG+ +R+++A+ L + + +LDEP G+ I+ + ++ L RG I+
Sbjct: 843 ANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSII 902
Query: 213 ITDHNVHEILT 223
+ +HN+ I T
Sbjct: 903 VIEHNLEVIKT 913
>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 853
Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 56 LLGPNGAGKTTFFYMMTGLICADSGS-IKID 85
LGP G GKT + L+ D S I+ID
Sbjct: 603 FLGPTGVGKTELVKSLARLLFDDENSMIRID 633
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 50 PGEIVGLLGPNGAGKTTF 67
P +V L+GP+G+GK+
Sbjct: 63 PSRVVILVGPSGSGKSCL 80
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 25.0 bits (53), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 213 ITDHNVHEILTLIDRAYIIHAGGVLAHGTVQEIIDNQDVRR 253
I H H TL DR +I H G+ +++DN D+ R
Sbjct: 16 IVAHIDHGKSTLADR-FIQHCRGLTEREMSSQVLDNMDIER 55
>gi|254780375|ref|YP_003064788.1| hypothetical protein CLIBASIA_01300 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 175
Score = 23.5 bits (49), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 124 VLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLD 183
VLE +KD ++R L++ KE+N+ W + + L+I + + S + + L+
Sbjct: 67 VLEDLQKDIEQRVILLENHKKEYNL--WFQKYDSFIMSYNKNILDIYKKMDSDSAALQLE 124
Query: 184 EPFAGVDPVAISDIHVLIRDLASRGIGILITDHN 217
+ +DP S H+L+R L+ R ++++ N
Sbjct: 125 Q----IDPDISS--HILMR-LSPRQSSLIMSKMN 151
>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 947
Score = 23.1 bits (48), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 179 YILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDHNVHEILTLIDR 227
Y + D G++P I +H L+RD G + + NV + + +ID+
Sbjct: 563 YFMKDAEGKGIEPFHIVYMHALVRD--KNGQKMSKSKGNVVDPIDVIDQ 609
>gi|254780160|ref|YP_003064573.1| hypothetical protein CLIBASIA_00215 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 298
Score = 22.7 bits (47), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 34 KYNSV--YVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYM--MTGLICADSG 80
KYN++ VVK V+PG+I+ + N A K TF + M G AD+
Sbjct: 183 KYNAIVSTVVK-----VEPGKIIDVTIQNRAAKITFKLVSEMGGEAVADTA 228
>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 699
Score = 22.7 bits (47), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 78 DSGSIKIDGNDITKMPMYRRARLGISYLPQEASIFRGLTVE 118
D G++KI + + ++ R I+ +P+ I++G V+
Sbjct: 589 DDGTVKIASSSLAEIEAAREMIRSITDVPEVNKIYKGQVVK 629
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 22.7 bits (47), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 51 GEIVGLLGPNGAGKTTFFY------MMTGLICA 77
G IV + GP +GKTT TG CA
Sbjct: 67 GRIVEIYGPESSGKTTLALHTIAQSQKTGGTCA 99
>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 438
Score = 22.3 bits (46), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 51 GEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDG 86
G+ +G+ +G GK+T M C D I + G
Sbjct: 161 GQRIGVFAGSGIGKSTLLSMFARSDCFDKVIISLVG 196
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.141 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,421
Number of Sequences: 1233
Number of extensions: 7281
Number of successful extensions: 70
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 32
length of query: 262
length of database: 328,796
effective HSP length: 72
effective length of query: 190
effective length of database: 240,020
effective search space: 45603800
effective search space used: 45603800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)