HHsearch alignment for GI: 254780745 and conserved domain: TIGR03002
>TIGR03002 outer_YhbN cell envelope biogenesis protein YhbN; InterPro: IPR014340 Members of this entry include YhbN, which is an essential protein in Escherichia coli. It is implicated in cell envelope integrity, and has numerous homologues in other Proteobacteria in a conserved location near lipopolysaccharide inner core biosynthesis genes. This entry is distantly related to the organic solvent tolerance protein (OstA)..
Probab=98.14 E-value=4.8e-05 Score=45.79 Aligned_cols=82 Identities=22% Similarity=0.228 Sum_probs=49.7
Q ss_pred EEEEEEEEEEEC--CC---CEEEEEEE--EEEEE----CC--EEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 799911699992--38---87999800--89997----87--59999689999617665444200122201222024556
Q gi|254780745|r 45 IHIKADMLEVKD--AV---QKAFFKGN--VFMTQ----ED--FSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGE 111 (181)
Q Consensus 45 i~I~AD~~~~d~--~~---~~~~~~GN--V~i~q----g~--~~i~aD~l~i~~~~~~~~~~~~i~~~~a~gnv~~~~~~ 111 (181)
T Consensus 39 ~~I~ADkv~v~~~~~~~~~~~~~A~G~~PA~F~q~~d~g~~~~~g~A~~i~Y~~~~~---------~~~Ltg~A~v~Q~~ 109 (150)
T TIGR03002 39 LKIRADKVVVTRPNDGGGIEKATATGNKPATFRQKLDDGKEYIEGQANRIEYDPAKD---------TVVLTGNARVKQGG 109 (150)
T ss_pred EEEECCEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCEEEEEECCEEEEECCCC---------EEEEECCEEEEECC
T ss_conf 598522889882688786089999807818988995599827999711899932577---------99991234997889
Q ss_pred -CCEEEEEEEEECCCCEEEEEECCC
Q ss_conf -533211279941665899994786
Q gi|254780745|r 112 -INVIASNGYVDFQKRILVLNGDRA 135 (181)
Q Consensus 112 -~~~~a~~~~y~~~~~~~~l~Gna~ 135 (181)
T Consensus 110 k~~~~G~~I~Y~~~~q~~~a~~~~~ 134 (150)
T TIGR03002 110 KNEVSGDVITYDTKKQKVTAKGGGG 134 (150)
T ss_pred CCEEECCEEEEECEEEEEEEEECCC
T ss_conf 7778766889844012998980788