Query         gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 181
No_of_seqs    112 out of 1078
Neff          8.1 
Searched_HMMs 33803
Date          Wed Jun  1 14:11:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780745.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2r19_A Protein YHBN; beta-jel  99.9 4.4E-23 1.3E-27  143.2  16.0  137   37-177     2-140 (159)
  2 >2r19_A Protein YHBN; beta-jel  98.7 1.9E-08 5.7E-13   63.8   5.5  108   43-166    37-155 (159)
  3 >3ecq_A Protein SPR0328, endo-  67.9     6.8  0.0002   17.5   6.4   84   59-143   130-226 (239)
  4 >3k6v_A Solute-binding protein  65.8     2.4 7.2E-05   19.9   1.2   49    1-49      1-49  (185)
  5 >1jpe_A DSBD-alpha; redox-acti  52.9     8.6 0.00026   17.0   2.1   17   54-70     52-68  (151)
  6 >2voz_A FUTA2, periplasmic iro  31.4      15 0.00045   15.6   0.6   25    1-25      1-25  (346)
  7 >1p99_A Hypothetical protein P  31.4      17 0.00049   15.4   0.8   41    4-49      5-45  (183)
  8 >1toa_A Tromp-1, protein (peri  29.1      21 0.00061   14.9   0.9   22    3-24      1-22  (195)
  9 >2ptl_A Protein L; binding pro  27.6      34   0.001   13.7   2.2   28   39-66     12-39  (78)
 10 >1kmo_A FECA, iron(III) dicitr  22.5      21 0.00062   14.9   0.0   27    1-27      1-28  (774)
 11 >2w0y_A APH, alkaline phosphat  22.0      19 0.00055   15.1  -0.3   17   40-56     44-62  (411)
 12 >3lay_A Zinc resistance-associ  21.3      23 0.00068   14.6   0.0   28    1-28     21-48  (175)

No 1  
>>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:)
Probab=99.91  E-value=4.4e-23  Score=143.20  Aligned_cols=137  Identities=17%  Similarity=0.173  Sum_probs=124.0

Q ss_pred             CCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCC--CEEEEEECCCCCCCCCCCCE
Q ss_conf             4457778479991169999238879998008999787599996899996176654442--00122201222024556533
Q gi|254780745|r   37 FKVLGNEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSN--KINRMDVERNIFIQSGEINV  114 (181)
Q Consensus        37 ~~~d~~~Pi~I~AD~~~~d~~~~~~~~~GNV~i~qg~~~i~aD~l~i~~~~~~~~~~~--~i~~~~a~gnv~~~~~~~~~  114 (181)
                      .+.+.++|++|+||++++|..++.++|+|||+|++++..|+||+++++++++.....+  ....+.+.|+|.+.+++..+
T Consensus         2 ~~~~~~~~i~i~Ad~~~~~~~~~~~~~~GnV~i~~~~~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~   81 (159)
T 2r19_A            2 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEG   81 (159)
T ss_dssp             CGGGGGSCEEEEESEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEE
T ss_pred             CCCCCCCCEEEEECEEEEECCCCEEEEECCEEEEECCEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEE
T ss_conf             87677899799956599235699999975689980867999989999977886642578751341189995168833999


Q ss_pred             EEEEEEEECCCCEEEEEECCCCEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCEEEEEEEC
Q ss_conf             211279941665899994786349997179769922999992165899992899809999811
Q gi|254780745|r  115 IASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGCESDQVQSIIRY  177 (181)
Q Consensus       115 ~a~~~~y~~~~~~~~l~Gna~~~v~l~q~~~~i~gdki~yn~~tg~~~~~g~~~~rV~~i~~~  177 (181)
                      +|+++.|+..++.++|+||+    .++++.+.++|+++.|+++++.+.+.|..+.+++..+.+
T Consensus        82 ~~~~~~y~~~~~~~~~~g~~----~~~~~~~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~  140 (159)
T 2r19_A           82 HASQMHYELAKDFVVLTGNA----YLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP  140 (159)
T ss_dssp             ECSEEEEEGGGTEEEEEEEE----EEEETTEEEEEEEEEEETTTTEEEEECSSSCCCCCCC--
T ss_pred             EEEEEEEECCCCEEEEECCE----EEEECCCEEEECEEEEEECCCEEEEECCCCCCEEEEECC
T ss_conf             98457997468889980678----999589999967899991689999965899945999998


No 2  
>>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:)
Probab=98.72  E-value=1.9e-08  Score=63.83  Aligned_cols=108  Identities=11%  Similarity=0.008  Sum_probs=83.4

Q ss_pred             CCEEEEEEEEEEECCCCE-----------EEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             847999116999923887-----------999800899978759999689999617665444200122201222024556
Q gi|254780745|r   43 EKIHIKADMLEVKDAVQK-----------AFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGE  111 (181)
Q Consensus        43 ~Pi~I~AD~~~~d~~~~~-----------~~~~GNV~i~qg~~~i~aD~l~i~~~~~~~~~~~~i~~~~a~gnv~~~~~~  111 (181)
                      ...+|+||.+.++.+++.           +.+.|+|.+.+++..++||++.++.+++         .+...|++.+.++.
T Consensus        37 ~~~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~y~~~~~---------~~~~~g~~~~~~~~  107 (159)
T 2r19_A           37 GTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKD---------FVVLTGNAYLQQVD  107 (159)
T ss_dssp             TTEEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEEECSEEEEEGGGT---------EEEEEEEEEEEETT
T ss_pred             CCEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCC---------EEEEECCEEEEECC
T ss_conf             867999989999977886642578751341189995168833999984579974688---------89980678999589


Q ss_pred             CCEEEEEEEEECCCCEEEEEECCCCEEEEEECCCEEEEEEEEEEECCCEEEEEEC
Q ss_conf             5332112799416658999947863499971797699229999921658999928
Q gi|254780745|r  112 INVIASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGC  166 (181)
Q Consensus       112 ~~~~a~~~~y~~~~~~~~l~Gna~~~v~l~q~~~~i~gdki~yn~~tg~~~~~g~  166 (181)
                      ...+|+++.|+..++.++..|+...       .-.+....+..|-.++...+.+.
T Consensus       108 ~~~~g~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~  155 (159)
T 2r19_A          108 SNIKGDKITYLVKEQKMQAFSDKGK-------RVTTVLVPSQLQDKNNKGQTPAQ  155 (159)
T ss_dssp             EEEEEEEEEEETTTTEEEEECSSSC-------CCCCCC-----------------
T ss_pred             CEEEECEEEEEECCCEEEEECCCCC-------CEEEEECCCCCCCCCCCCCCCCC
T ss_conf             9999678999916899999658999-------45999998766768888899767


No 3  
>>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase domain, cell WALL; 2.90A {Streptococcus pneumoniae} (A:783-1021)
Probab=67.94  E-value=6.8  Score=17.53  Aligned_cols=84  Identities=7%  Similarity=0.052  Sum_probs=47.1

Q ss_pred             CEEEEEEEEEEEECCEEEEE-------------EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf             87999800899978759999-------------68999961766544420012220122202455653321127994166
Q gi|254780745|r   59 QKAFFKGNVFMTQEDFSLQA-------------DKMTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDFQK  125 (181)
Q Consensus        59 ~~~~~~GNV~i~qg~~~i~a-------------D~l~i~~~~~~~~~~~~i~~~~a~gnv~~~~~~~~~~a~~~~y~~~~  125 (181)
                      ..+++.|.+++.-+...|--             ++| ++++......+=.+-.-.+.++|.+..-...++.+....-..+
T Consensus       130 RtitlnG~~V~~G~~YLlPW~~d~~g~~~~~~~eKl-Yh~N~~gGtsTW~LP~~w~~~~v~vYeLTD~GR~~~~~V~V~~  208 (239)
T 3ecq_A          130 RTVTLNGRVIQDGSAYLTPWNWDANGKKLSTDKEKX-YYFNTQAGATTWTLPSDWAKSKVYLYKLTDQGKTEEQELTVKD  208 (239)
T ss_dssp             EEEEETTEEEEETTEEEEEECBCTTSCBCCGGGCEE-EEEESSCSEEEEECCHHHHTSCCEEEEEETTEEEEEEECCCCS
T ss_pred             EEEEECCEEEECCCCEEEECCCCCCCCCCCCCCCEE-EEECCCCCCEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEC
T ss_conf             389889989835985895245556766255676517-8873899815577874115876999995377830346881779


Q ss_pred             CEEEEEECCCCEEEEEEC
Q ss_conf             589999478634999717
Q gi|254780745|r  126 RILVLNGDRADKVILKEK  143 (181)
Q Consensus       126 ~~~~l~Gna~~~v~l~q~  143 (181)
                      +.++|+-.|....+|..+
T Consensus       209 GkVTL~A~a~tpYVlyk~  226 (239)
T 3ecq_A          209 GKITLDLLANQPYVLYRS  226 (239)
T ss_dssp             SEEEEECCTTCCEEEESS
T ss_pred             CEEEEEECCCCCEEEECC
T ss_conf             979988538988899458


No 4  
>>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354)
Probab=65.82  E-value=2.4  Score=19.93  Aligned_cols=49  Identities=6%  Similarity=-0.174  Sum_probs=28.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             9134678899999999999998777433210001224457778479991
Q gi|254780745|r    1 MSAFLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKA   49 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~d~~~Pi~I~A   49 (181)
                      |+..+++..+...++++++.++.++|..........-......++.+-+
T Consensus         1 Mkk~~~~k~~~~~~~~~~~~~~lagC~~~~~~~~~~~~~~~~~~L~v~~   49 (185)
T 3k6v_A            1 MKHHHHHHPMSDYDIPTTENLYFQGAMADNQPEPGNTSAGEGEVLTVFH   49 (185)
T ss_dssp             ------------------------------------------CEEEEEE
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEE
T ss_conf             9865467875346524266666431012588999987778897699998


No 5  
>>1jpe_A DSBD-alpha; redox-active center, electron transport, inner membrane, disulfide bond formation; 1.90A {Escherichia coli} (A:)
Probab=52.91  E-value=8.6  Score=16.96  Aligned_cols=17  Identities=6%  Similarity=0.018  Sum_probs=6.9

Q ss_pred             EECCCCEEEEEEEEEEE
Q ss_conf             99238879998008999
Q gi|254780745|r   54 VKDAVQKAFFKGNVFMT   70 (181)
Q Consensus        54 ~d~~~~~~~~~GNV~i~   70 (181)
                      ++-..|...|...+.+.
T Consensus        52 ~~I~~g~ylY~~~i~~~   68 (151)
T 1jpe_A           52 WQIKDGYYLYRKQIRIT   68 (151)
T ss_dssp             EEECTTEEEEGGGCEEE
T ss_pred             EEECCCEEEEEEEEEEE
T ss_conf             99689868980179997


No 6  
>>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* (A:)
Probab=31.36  E-value=15  Score=15.62  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=15.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9134678899999999999998777
Q gi|254780745|r    1 MSAFLNSIHLYIHLLALVFVLLKAD   25 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~~~~~~   25 (181)
                      |+.+|++..+.+.+++++++.+.+.
T Consensus         1 M~k~m~r~~~~~~~~~~~~~~~~~c   25 (346)
T 2voz_A            1 MTTKISRRTFFVGGTALTALVVANL   25 (346)
T ss_dssp             -------------------------
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9860339999999999999999863


No 7  
>>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295)
Probab=31.36  E-value=17  Score=15.43  Aligned_cols=41  Identities=10%  Similarity=-0.002  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE
Q ss_conf             4678899999999999998777433210001224457778479991
Q gi|254780745|r    4 FLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKA   49 (181)
Q Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~d~~~Pi~I~A   49 (181)
                      ++.+..+...++++++.++.|++.....+     .....++|.|-.
T Consensus         5 ~~~~k~~~~~~~~~~l~l~~~g~~~~~~~-----~~~~~~~I~VG~   45 (183)
T 1p99_A            5 HHHHDYDIPTTENLYFQGAHMGIQRPTST-----GSNNDKKVTIGV   45 (183)
T ss_dssp             ----------------------------------------CEEEEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCCC-----CCCCCCEEEEEE
T ss_conf             55555677317889999985147899888-----888996399996


No 8  
>>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195)
Probab=29.08  E-value=21  Score=14.92  Aligned_cols=22  Identities=9%  Similarity=-0.102  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3467889999999999999877
Q gi|254780745|r    3 AFLNSIHLYIHLLALVFVLLKA   24 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~   24 (181)
                      +||++.+..+..++++++++.+
T Consensus         1 ~~m~~mk~~~~~~~~~~~~~~~   22 (195)
T 1toa_A            1 SYYHHHHHHDYDIPTTENLYFQ   22 (195)
T ss_dssp             ----------------------
T ss_pred             CCCCCCCCCCCCCCCHHHHHHH
T ss_conf             9554445433577316999999


No 9  
>>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna atcc 29328} (A:)
Probab=27.59  E-value=34  Score=13.72  Aligned_cols=28  Identities=32%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             CCCCCCEEEEEEEEEEECCCCEEEEEEE
Q ss_conf             5777847999116999923887999800
Q gi|254780745|r   39 VLGNEKIHIKADMLEVKDAVQKAFFKGN   66 (181)
Q Consensus        39 ~d~~~Pi~I~AD~~~~d~~~~~~~~~GN   66 (181)
                      .|..+.+.|.++-+..|...+.+.|.|-
T Consensus        12 td~~EeVTIKaNlifadG~tQtAeFkGT   39 (78)
T 2ptl_A           12 TDSEEEVTIKANLIFANGSTQTAEFKGT   39 (78)
T ss_dssp             SCSSCSEEEEEEEECSSSCCEEEEEEES
T ss_pred             CCCCCEEEEEEEEEECCCCEEEEEEECH
T ss_conf             6762348999889971695787786201


No 10 
>>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:)
Probab=22.52  E-value=21  Score=14.86  Aligned_cols=27  Identities=19%  Similarity=-0.042  Sum_probs=9.2

Q ss_pred             CCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             91346788-9999999999999877743
Q gi|254780745|r    1 MSAFLNSI-HLYIHLLALVFVLLKADLS   27 (181)
Q Consensus         1 ~~~~~~~~-~~~~~~~~~l~~~~~~~~a   27 (181)
                      ||.+.... ++.+.+++++++++.++.+
T Consensus         1 M~~~~~~~~~~~l~~~~~~~~~~~~~~~   28 (774)
T 1kmo_A            1 MTPLRVFRKTTPLVNTIRLSLLPLAGLS   28 (774)
T ss_dssp             ----------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9842333214489999999999877643


No 11 
>>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} (A:1-364,A:427-473)
Probab=22.04  E-value=19  Score=15.15  Aligned_cols=17  Identities=12%  Similarity=0.024  Sum_probs=11.4

Q ss_pred             CCCCC--EEEEEEEEEEEC
Q ss_conf             77784--799911699992
Q gi|254780745|r   40 LGNEK--IHIKADMLEVKD   56 (181)
Q Consensus        40 d~~~P--i~I~AD~~~~d~   56 (181)
                      ..++|  |-|.+|.+.+++
T Consensus        44 ~~~~PNIilI~~Dd~~~~~   62 (411)
T 2w0y_A           44 ASPAANAIAYIVDGMGQTQ   62 (411)
T ss_dssp             CCSCSEEEEEEEEECCHHH
T ss_pred             CCCCCEEEEEEECCCCHHH
T ss_conf             8998859999868999999


No 12 
>>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:)
Probab=21.32  E-value=23  Score=14.65  Aligned_cols=28  Identities=11%  Similarity=-0.071  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9134678899999999999998777433
Q gi|254780745|r    1 MSAFLNSIHLYIHLLALVFVLLKADLSQ   28 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~l~~~~~~~~a~   28 (181)
                      ||..|+++.+.+.++++++++...+.+.
T Consensus        21 ~~~~Mk~~~~~~~~~~~l~~~~~~~~~~   48 (175)
T 3lay_A           21 QSNAMKRNNKSAIALIALSLLALSSGAA   48 (175)
T ss_dssp             ----------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5532668999999999999999733588


Done!