Query gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 181 No_of_seqs 112 out of 1078 Neff 8.1 Searched_HMMs 33803 Date Wed Jun 1 14:11:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780745.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2r19_A Protein YHBN; beta-jel 99.9 4.4E-23 1.3E-27 143.2 16.0 137 37-177 2-140 (159) 2 >2r19_A Protein YHBN; beta-jel 98.7 1.9E-08 5.7E-13 63.8 5.5 108 43-166 37-155 (159) 3 >3ecq_A Protein SPR0328, endo- 67.9 6.8 0.0002 17.5 6.4 84 59-143 130-226 (239) 4 >3k6v_A Solute-binding protein 65.8 2.4 7.2E-05 19.9 1.2 49 1-49 1-49 (185) 5 >1jpe_A DSBD-alpha; redox-acti 52.9 8.6 0.00026 17.0 2.1 17 54-70 52-68 (151) 6 >2voz_A FUTA2, periplasmic iro 31.4 15 0.00045 15.6 0.6 25 1-25 1-25 (346) 7 >1p99_A Hypothetical protein P 31.4 17 0.00049 15.4 0.8 41 4-49 5-45 (183) 8 >1toa_A Tromp-1, protein (peri 29.1 21 0.00061 14.9 0.9 22 3-24 1-22 (195) 9 >2ptl_A Protein L; binding pro 27.6 34 0.001 13.7 2.2 28 39-66 12-39 (78) 10 >1kmo_A FECA, iron(III) dicitr 22.5 21 0.00062 14.9 0.0 27 1-27 1-28 (774) 11 >2w0y_A APH, alkaline phosphat 22.0 19 0.00055 15.1 -0.3 17 40-56 44-62 (411) 12 >3lay_A Zinc resistance-associ 21.3 23 0.00068 14.6 0.0 28 1-28 21-48 (175) No 1 >>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:) Probab=99.91 E-value=4.4e-23 Score=143.20 Aligned_cols=137 Identities=17% Similarity=0.173 Sum_probs=124.0 Q ss_pred CCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCC--CEEEEEECCCCCCCCCCCCE Q ss_conf 4457778479991169999238879998008999787599996899996176654442--00122201222024556533 Q gi|254780745|r 37 FKVLGNEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSN--KINRMDVERNIFIQSGEINV 114 (181) Q Consensus 37 ~~~d~~~Pi~I~AD~~~~d~~~~~~~~~GNV~i~qg~~~i~aD~l~i~~~~~~~~~~~--~i~~~~a~gnv~~~~~~~~~ 114 (181) .+.+.++|++|+||++++|..++.++|+|||+|++++..|+||+++++++++.....+ ....+.+.|+|.+.+++..+ T Consensus 2 ~~~~~~~~i~i~Ad~~~~~~~~~~~~~~GnV~i~~~~~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~ 81 (159) T 2r19_A 2 VTGDTDQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEG 81 (159) T ss_dssp CGGGGGSCEEEEESEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEE T ss_pred CCCCCCCCEEEEECEEEEECCCCEEEEECCEEEEECCEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEE T ss_conf 87677899799956599235699999975689980867999989999977886642578751341189995168833999 Q ss_pred EEEEEEEECCCCEEEEEECCCCEEEEEECCCEEEEEEEEEEECCCEEEEEECCCCEEEEEEEC Q ss_conf 211279941665899994786349997179769922999992165899992899809999811 Q gi|254780745|r 115 IASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGCESDQVQSIIRY 177 (181) Q Consensus 115 ~a~~~~y~~~~~~~~l~Gna~~~v~l~q~~~~i~gdki~yn~~tg~~~~~g~~~~rV~~i~~~ 177 (181) +|+++.|+..++.++|+||+ .++++.+.++|+++.|+++++.+.+.|..+.+++..+.+ T Consensus 82 ~~~~~~y~~~~~~~~~~g~~----~~~~~~~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 140 (159) T 2r19_A 82 HASQMHYELAKDFVVLTGNA----YLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVP 140 (159) T ss_dssp ECSEEEEEGGGTEEEEEEEE----EEEETTEEEEEEEEEEETTTTEEEEECSSSCCCCCCC-- T ss_pred EEEEEEEECCCCEEEEECCE----EEEECCCEEEECEEEEEECCCEEEEECCCCCCEEEEECC T ss_conf 98457997468889980678----999589999967899991689999965899945999998 No 2 >>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:) Probab=98.72 E-value=1.9e-08 Score=63.83 Aligned_cols=108 Identities=11% Similarity=0.008 Sum_probs=83.4 Q ss_pred CCEEEEEEEEEEECCCCE-----------EEEEEEEEEEECCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCC Q ss_conf 847999116999923887-----------999800899978759999689999617665444200122201222024556 Q gi|254780745|r 43 EKIHIKADMLEVKDAVQK-----------AFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVERNIFIQSGE 111 (181) Q Consensus 43 ~Pi~I~AD~~~~d~~~~~-----------~~~~GNV~i~qg~~~i~aD~l~i~~~~~~~~~~~~i~~~~a~gnv~~~~~~ 111 (181) ...+|+||.+.++.+++. +.+.|+|.+.+++..++||++.++.+++ .+...|++.+.++. T Consensus 37 ~~~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~y~~~~~---------~~~~~g~~~~~~~~ 107 (159) T 2r19_A 37 GTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQMHYELAKD---------FVVLTGNAYLQQVD 107 (159) T ss_dssp TTEEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEEECSEEEEEGGGT---------EEEEEEEEEEEETT T ss_pred CCEEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCC---------EEEEECCEEEEECC T ss_conf 867999989999977886642578751341189995168833999984579974688---------89980678999589 Q ss_pred CCEEEEEEEEECCCCEEEEEECCCCEEEEEECCCEEEEEEEEEEECCCEEEEEEC Q ss_conf 5332112799416658999947863499971797699229999921658999928 Q gi|254780745|r 112 INVIASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTSFASLQGC 166 (181) Q Consensus 112 ~~~~a~~~~y~~~~~~~~l~Gna~~~v~l~q~~~~i~gdki~yn~~tg~~~~~g~ 166 (181) ...+|+++.|+..++.++..|+... .-.+....+..|-.++...+.+. T Consensus 108 ~~~~g~~~~~~~~~~~~t~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~ 155 (159) T 2r19_A 108 SNIKGDKITYLVKEQKMQAFSDKGK-------RVTTVLVPSQLQDKNNKGQTPAQ 155 (159) T ss_dssp EEEEEEEEEEETTTTEEEEECSSSC-------CCCCCC----------------- T ss_pred CEEEECEEEEEECCCEEEEECCCCC-------CEEEEECCCCCCCCCCCCCCCCC T ss_conf 9999678999916899999658999-------45999998766768888899767 No 3 >>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase domain, cell WALL; 2.90A {Streptococcus pneumoniae} (A:783-1021) Probab=67.94 E-value=6.8 Score=17.53 Aligned_cols=84 Identities=7% Similarity=0.052 Sum_probs=47.1 Q ss_pred CEEEEEEEEEEEECCEEEEE-------------EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCC Q ss_conf 87999800899978759999-------------68999961766544420012220122202455653321127994166 Q gi|254780745|r 59 QKAFFKGNVFMTQEDFSLQA-------------DKMTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDFQK 125 (181) Q Consensus 59 ~~~~~~GNV~i~qg~~~i~a-------------D~l~i~~~~~~~~~~~~i~~~~a~gnv~~~~~~~~~~a~~~~y~~~~ 125 (181) ..+++.|.+++.-+...|-- ++| ++++......+=.+-.-.+.++|.+..-...++.+....-..+ T Consensus 130 RtitlnG~~V~~G~~YLlPW~~d~~g~~~~~~~eKl-Yh~N~~gGtsTW~LP~~w~~~~v~vYeLTD~GR~~~~~V~V~~ 208 (239) T 3ecq_A 130 RTVTLNGRVIQDGSAYLTPWNWDANGKKLSTDKEKX-YYFNTQAGATTWTLPSDWAKSKVYLYKLTDQGKTEEQELTVKD 208 (239) T ss_dssp EEEEETTEEEEETTEEEEEECBCTTSCBCCGGGCEE-EEEESSCSEEEEECCHHHHTSCCEEEEEETTEEEEEEECCCCS T ss_pred EEEEECCEEEECCCCEEEECCCCCCCCCCCCCCCEE-EEECCCCCCEEEECCCCCCCCEEEEEEECCCCCEEEEEEEEEC T ss_conf 389889989835985895245556766255676517-8873899815577874115876999995377830346881779 Q ss_pred CEEEEEECCCCEEEEEEC Q ss_conf 589999478634999717 Q gi|254780745|r 126 RILVLNGDRADKVILKEK 143 (181) Q Consensus 126 ~~~~l~Gna~~~v~l~q~ 143 (181) +.++|+-.|....+|..+ T Consensus 209 GkVTL~A~a~tpYVlyk~ 226 (239) T 3ecq_A 209 GKITLDLLANQPYVLYRS 226 (239) T ss_dssp SEEEEECCTTCCEEEESS T ss_pred CEEEEEECCCCCEEEECC T ss_conf 979988538988899458 No 4 >>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic binding protein, ABC transporter, transport protein, ligand; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A (A:1-123,A:293-354) Probab=65.82 E-value=2.4 Score=19.93 Aligned_cols=49 Identities=6% Similarity=-0.174 Sum_probs=28.9 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE Q ss_conf 9134678899999999999998777433210001224457778479991 Q gi|254780745|r 1 MSAFLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKA 49 (181) Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~d~~~Pi~I~A 49 (181) |+..+++..+...++++++.++.++|..........-......++.+-+ T Consensus 1 Mkk~~~~k~~~~~~~~~~~~~~lagC~~~~~~~~~~~~~~~~~~L~v~~ 49 (185) T 3k6v_A 1 MKHHHHHHPMSDYDIPTTENLYFQGAMADNQPEPGNTSAGEGEVLTVFH 49 (185) T ss_dssp ------------------------------------------CEEEEEE T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCCCCCCCCEEEEEE T ss_conf 9865467875346524266666431012588999987778897699998 No 5 >>1jpe_A DSBD-alpha; redox-active center, electron transport, inner membrane, disulfide bond formation; 1.90A {Escherichia coli} (A:) Probab=52.91 E-value=8.6 Score=16.96 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=6.9 Q ss_pred EECCCCEEEEEEEEEEE Q ss_conf 99238879998008999 Q gi|254780745|r 54 VKDAVQKAFFKGNVFMT 70 (181) Q Consensus 54 ~d~~~~~~~~~GNV~i~ 70 (181) ++-..|...|...+.+. T Consensus 52 ~~I~~g~ylY~~~i~~~ 68 (151) T 1jpe_A 52 WQIKDGYYLYRKQIRIT 68 (151) T ss_dssp EEECTTEEEEGGGCEEE T ss_pred EEECCCEEEEEEEEEEE T ss_conf 99689868980179997 No 6 >>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* (A:) Probab=31.36 E-value=15 Score=15.62 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=15.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9134678899999999999998777 Q gi|254780745|r 1 MSAFLNSIHLYIHLLALVFVLLKAD 25 (181) Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~ 25 (181) |+.+|++..+.+.+++++++.+.+. T Consensus 1 M~k~m~r~~~~~~~~~~~~~~~~~c 25 (346) T 2voz_A 1 MTTKISRRTFFVGGTALTALVVANL 25 (346) T ss_dssp ------------------------- T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 9860339999999999999999863 No 7 >>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} (A:1-119,A:232-295) Probab=31.36 E-value=17 Score=15.43 Aligned_cols=41 Identities=10% Similarity=-0.002 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE Q ss_conf 4678899999999999998777433210001224457778479991 Q gi|254780745|r 4 FLNSIHLYIHLLALVFVLLKADLSQAAASYMTRFKVLGNEKIHIKA 49 (181) Q Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~d~~~Pi~I~A 49 (181) ++.+..+...++++++.++.|++.....+ .....++|.|-. T Consensus 5 ~~~~k~~~~~~~~~~l~l~~~g~~~~~~~-----~~~~~~~I~VG~ 45 (183) T 1p99_A 5 HHHHDYDIPTTENLYFQGAHMGIQRPTST-----GSNNDKKVTIGV 45 (183) T ss_dssp ----------------------------------------CEEEEE T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCCC-----CCCCCCEEEEEE T ss_conf 55555677317889999985147899888-----888996399996 No 8 >>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195) Probab=29.08 E-value=21 Score=14.92 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3467889999999999999877 Q gi|254780745|r 3 AFLNSIHLYIHLLALVFVLLKA 24 (181) Q Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~ 24 (181) +||++.+..+..++++++++.+ T Consensus 1 ~~m~~mk~~~~~~~~~~~~~~~ 22 (195) T 1toa_A 1 SYYHHHHHHDYDIPTTENLYFQ 22 (195) T ss_dssp ---------------------- T ss_pred CCCCCCCCCCCCCCCHHHHHHH T ss_conf 9554445433577316999999 No 9 >>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna atcc 29328} (A:) Probab=27.59 E-value=34 Score=13.72 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=22.0 Q ss_pred CCCCCCEEEEEEEEEEECCCCEEEEEEE Q ss_conf 5777847999116999923887999800 Q gi|254780745|r 39 VLGNEKIHIKADMLEVKDAVQKAFFKGN 66 (181) Q Consensus 39 ~d~~~Pi~I~AD~~~~d~~~~~~~~~GN 66 (181) .|..+.+.|.++-+..|...+.+.|.|- T Consensus 12 td~~EeVTIKaNlifadG~tQtAeFkGT 39 (78) T 2ptl_A 12 TDSEEEVTIKANLIFANGSTQTAEFKGT 39 (78) T ss_dssp SCSSCSEEEEEEEECSSSCCEEEEEEES T ss_pred CCCCCEEEEEEEEEECCCCEEEEEEECH T ss_conf 6762348999889971695787786201 No 10 >>1kmo_A FECA, iron(III) dicitrate transport protein FECA; membrane protein, iron transporter, TONB-dependent receptor, siderophore; HET: LDA HTO; 2.00A {Escherichia coli K12} (A:) Probab=22.52 E-value=21 Score=14.86 Aligned_cols=27 Identities=19% Similarity=-0.042 Sum_probs=9.2 Q ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 91346788-9999999999999877743 Q gi|254780745|r 1 MSAFLNSI-HLYIHLLALVFVLLKADLS 27 (181) Q Consensus 1 ~~~~~~~~-~~~~~~~~~l~~~~~~~~a 27 (181) ||.+.... ++.+.+++++++++.++.+ T Consensus 1 M~~~~~~~~~~~l~~~~~~~~~~~~~~~ 28 (774) T 1kmo_A 1 MTPLRVFRKTTPLVNTIRLSLLPLAGLS 28 (774) T ss_dssp ---------------------------- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9842333214489999999999877643 No 11 >>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} (A:1-364,A:427-473) Probab=22.04 E-value=19 Score=15.15 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=11.4 Q ss_pred CCCCC--EEEEEEEEEEEC Q ss_conf 77784--799911699992 Q gi|254780745|r 40 LGNEK--IHIKADMLEVKD 56 (181) Q Consensus 40 d~~~P--i~I~AD~~~~d~ 56 (181) ..++| |-|.+|.+.+++ T Consensus 44 ~~~~PNIilI~~Dd~~~~~ 62 (411) T 2w0y_A 44 ASPAANAIAYIVDGMGQTQ 62 (411) T ss_dssp CCSCSEEEEEEEEECCHHH T ss_pred CCCCCEEEEEEECCCCHHH T ss_conf 8998859999868999999 No 12 >>3lay_A Zinc resistance-associated protein; salmonella typhimurium LT2, ZRAP, periplasm, structural genomics; 2.70A {Salmonella enterica subsp} (A:) Probab=21.32 E-value=23 Score=14.65 Aligned_cols=28 Identities=11% Similarity=-0.071 Sum_probs=16.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9134678899999999999998777433 Q gi|254780745|r 1 MSAFLNSIHLYIHLLALVFVLLKADLSQ 28 (181) Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~a~ 28 (181) ||..|+++.+.+.++++++++...+.+. T Consensus 21 ~~~~Mk~~~~~~~~~~~l~~~~~~~~~~ 48 (175) T 3lay_A 21 QSNAMKRNNKSAIALIALSLLALSSGAA 48 (175) T ss_dssp ---------------------------- T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5532668999999999999999733588 Done!