RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62] (181 letters) >2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:) Length = 159 Score = 67.0 bits (163), Expect = 2e-12 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 6/137 (4%) Query: 42 NEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDY--NNTNRDVSNKINRM 99 ++ IHI++D + F GNV +TQ + ADK+ + ++V + + Sbjct: 7 DQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKP 66 Query: 100 DVERNIFIQSGEINVIASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTS 159 + + AS + + K +VL G+ L++ + G K+ + Sbjct: 67 ATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGN----AYLQQVDSNIKGDKITYLVKEQ 122 Query: 160 FASLQGCESDQVQSIIR 176 + +V +++ Sbjct: 123 KMQAFSDKGKRVTTVLV 139 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 30.9 bits (70), Expect = 0.11 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 16/43 (37%) Query: 49 ADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRD 91 AD++ ++ V+ F++G MT M RD Sbjct: 3 ADVMSIESLVEVVFYRG---MT----------M---QVAVPRD 29 >3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 1xwe_A (A:822-932) Length = 111 Score = 27.2 bits (60), Expect = 1.2 Identities = 5/34 (14%), Positives = 12/34 (35%) Query: 27 SQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQK 60 S ++ +G I+ + K+ + K Sbjct: 71 SSHLVTFTVLPLEIGLHNINFSLETWFGKEILVK 104 >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646} (A:90-190) Length = 101 Score = 26.4 bits (58), Expect = 2.6 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%) Query: 92 VSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRI 127 ++ ++ +DV +N++I++ N+ A NGY +K I Sbjct: 53 LNQQLTGIDVYQNLYIENAIANIYAENGY--LKKGI 86 >2w2d_B Bontoxilysin-A, botulinum neurotoxin A heavy chain; metalloprotease, membrane domain, protein engineering, metal-binding, transmembrane; 2.59A {Clostridium botulinum} (B:) Length = 431 Score = 26.3 bits (58), Expect = 2.9 Identities = 6/48 (12%), Positives = 22/48 (45%) Query: 81 MTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRIL 128 + + ++ + ++ IN+ + N F+ ++ + ++ KR+ Sbjct: 316 INFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLE 363 >2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin/immune system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:420-873) Length = 454 Score = 25.1 bits (55), Expect = 5.1 Identities = 6/48 (12%), Positives = 22/48 (45%) Query: 81 MTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRIL 128 + + ++ + ++ IN+ + N F+ ++ + ++ KR+ Sbjct: 342 INFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLE 389 >1hz6_A Protein L; four stranded beta-sheet with central alpha helix, binds kappa light chain of immunoglobulins, protein binding; 1.70A {Finegoldia magna atcc 29328} (A:) Length = 72 Score = 25.3 bits (55), Expect = 5.3 Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 41 GNEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMD 100 E++ IKA+++ + Q A FKG + AD + D DV++K ++ Sbjct: 8 AMEEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVADKGYTLN 67 Query: 101 VE 102 ++ Sbjct: 68 IK 69 >2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna atcc 29328} (A:) Length = 78 Score = 25.0 bits (54), Expect = 6.6 Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 43 EKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVE 102 E++ IKA+++ + Q A FKG + AD + D DV++K ++++ Sbjct: 16 EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEYTVDVADKGYTLNIK 75 >2icn_B Prolactin-inducible protein; beta-pleated sheet, complex, seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo sapiens} PDB: 3es6_B* (B:) Length = 118 Score = 24.5 bits (53), Expect = 8.0 Identities = 3/34 (8%), Positives = 8/34 (23%) Query: 27 SQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQK 60 ++ F +I D++ Sbjct: 64 DDNPKTFYWDFYTNRTVQIAAVVDVIRELGICPD 97 >1xf5_L Protein L, monoclonal antibody 19D9D6 light chain; crystal packing, FAB, peptide complex, immune system; 2.60A {Finegoldia magna atcc 29328} PDB: 1xct_L 1xcq_L (L:) Length = 80 Score = 24.6 bits (53), Expect = 8.1 Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 43 EKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVE 102 E++ IK +++ +Q A FKG + AD + D+ + N M+++ Sbjct: 17 EEVTIKVNLIFADGKIQTAEFKGTFEEATAEAYRYADLLAKVNGEWTADLEDGGNCMNIK 76 >1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} (A:165-180,A:230-399) Length = 186 Score = 24.7 bits (54), Expect = 8.6 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 45 IHIKADMLEVKD-----AVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRM 99 +H+KA M++V D + F+K + + ++ D NN D+ +I + Sbjct: 39 VHLKATMMKVSDPIMFGQIVSEFYK-DAL---TKHAEVLKQIGFDVNNGIGDLYARIKTL 94 Query: 100 DVERNIFIQSG 110 + I++ Sbjct: 95 PEAKQKEIEAD 105 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.137 0.378 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,216,752 Number of extensions: 49173 Number of successful extensions: 135 Number of sequences better than 10.0: 1 Number of HSP's gapped: 135 Number of HSP's successfully gapped: 20 Length of query: 181 Length of database: 4,956,049 Length adjustment: 83 Effective length of query: 98 Effective length of database: 2,150,234 Effective search space: 210722932 Effective search space used: 210722932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (24.1 bits)