RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780745|ref|YP_003065158.1| OstA family protein
[Candidatus Liberibacter asiaticus str. psy62]
         (181 letters)



>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO,
           structural genomics, montreal-kingston bacterial
           structural genomics initiative, BSGI; 2.16A {Escherichia
           coli K12} PDB: 2r1a_A (A:)
          Length = 159

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 6/137 (4%)

Query: 42  NEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDY--NNTNRDVSNKINRM 99
           ++ IHI++D   +        F GNV +TQ    + ADK+ +        ++V +   + 
Sbjct: 7   DQPIHIESDQQSLDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKP 66

Query: 100 DVERNIFIQSGEINVIASNGYVDFQKRILVLNGDRADKVILKEKLNTFLGCKLIVNIDTS 159
                +      +   AS  + +  K  +VL G+      L++  +   G K+   +   
Sbjct: 67  ATFYQMQDNGKPVEGHASQMHYELAKDFVVLTGN----AYLQQVDSNIKGDKITYLVKEQ 122

Query: 160 FASLQGCESDQVQSIIR 176
                  +  +V +++ 
Sbjct: 123 KMQAFSDKGKRVTTVLV 139


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl reductase,
          beta-ketoacyl synthase, dehydratase; 4.00A
          {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 30.9 bits (70), Expect = 0.11
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 16/43 (37%)

Query: 49 ADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRD 91
          AD++ ++  V+  F++G   MT          M        RD
Sbjct: 3  ADVMSIESLVEVVFYRG---MT----------M---QVAVPRD 29


>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin,
           cleavage on PAIR of basic residues, complement alternate
           pathway, complement pathway; HET: NAG; 3.10A {Homo
           sapiens} PDB: 3kls_A* 3km9_A* 1xwe_A (A:822-932)
          Length = 111

 Score = 27.2 bits (60), Expect = 1.2
 Identities = 5/34 (14%), Positives = 12/34 (35%)

Query: 27  SQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQK 60
           S    ++      +G   I+   +    K+ + K
Sbjct: 71  SSHLVTFTVLPLEIGLHNINFSLETWFGKEILVK 104


>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A
           {Bacillus thuringiensis serovarisraelensis atcc 35646}
           (A:90-190)
          Length = 101

 Score = 26.4 bits (58), Expect = 2.6
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 92  VSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRI 127
           ++ ++  +DV +N++I++   N+ A NGY   +K I
Sbjct: 53  LNQQLTGIDVYQNLYIENAIANIYAENGY--LKKGI 86


>2w2d_B Bontoxilysin-A, botulinum neurotoxin A heavy chain;
           metalloprotease, membrane domain, protein engineering,
           metal-binding, transmembrane; 2.59A {Clostridium
           botulinum} (B:)
          Length = 431

 Score = 26.3 bits (58), Expect = 2.9
 Identities = 6/48 (12%), Positives = 22/48 (45%)

Query: 81  MTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRIL 128
           +  + ++ +  ++  IN+  +  N F+    ++ + ++      KR+ 
Sbjct: 316 INFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLE 363


>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein
           antibody complex, toxin/immune system complex; 2.61A
           {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:420-873)
          Length = 454

 Score = 25.1 bits (55), Expect = 5.1
 Identities = 6/48 (12%), Positives = 22/48 (45%)

Query: 81  MTIDYNNTNRDVSNKINRMDVERNIFIQSGEINVIASNGYVDFQKRIL 128
           +  + ++ +  ++  IN+  +  N F+    ++ + ++      KR+ 
Sbjct: 342 INFNIDDLSSKLNESINKAMININKFLNQCSVSYLMNSMIPYGVKRLE 389


>1hz6_A Protein L; four stranded beta-sheet with central alpha
           helix, binds kappa light chain of immunoglobulins,
           protein binding; 1.70A {Finegoldia magna atcc 29328}
           (A:)
          Length = 72

 Score = 25.3 bits (55), Expect = 5.3
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 41  GNEKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMD 100
             E++ IKA+++    + Q A FKG       +    AD +  D      DV++K   ++
Sbjct: 8   AMEEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVADKGYTLN 67

Query: 101 VE 102
           ++
Sbjct: 68  IK 69


>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR
           {Finegoldia magna atcc 29328} (A:)
          Length = 78

 Score = 25.0 bits (54), Expect = 6.6
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 43  EKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVE 102
           E++ IKA+++    + Q A FKG       +    AD +  D      DV++K   ++++
Sbjct: 16  EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEYTVDVADKGYTLNIK 75


>2icn_B Prolactin-inducible protein; beta-pleated sheet, complex,
          seminal fluid; HET: NAG BMA MAN P6G; 3.23A {Homo
          sapiens} PDB: 3es6_B* (B:)
          Length = 118

 Score = 24.5 bits (53), Expect = 8.0
 Identities = 3/34 (8%), Positives = 8/34 (23%)

Query: 27 SQAAASYMTRFKVLGNEKIHIKADMLEVKDAVQK 60
               ++   F      +I    D++        
Sbjct: 64 DDNPKTFYWDFYTNRTVQIAAVVDVIRELGICPD 97


>1xf5_L Protein L, monoclonal antibody 19D9D6 light chain; crystal
           packing, FAB, peptide complex, immune system; 2.60A
           {Finegoldia magna atcc 29328} PDB: 1xct_L 1xcq_L (L:)
          Length = 80

 Score = 24.6 bits (53), Expect = 8.1
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 43  EKIHIKADMLEVKDAVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRMDVE 102
           E++ IK +++     +Q A FKG       +    AD +         D+ +  N M+++
Sbjct: 17  EEVTIKVNLIFADGKIQTAEFKGTFEEATAEAYRYADLLAKVNGEWTADLEDGGNCMNIK 76


>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase;
           HET: ICT; 1.95A {Azotobacter vinelandii}
           (A:165-180,A:230-399)
          Length = 186

 Score = 24.7 bits (54), Expect = 8.6
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 45  IHIKADMLEVKD-----AVQKAFFKGNVFMTQEDFSLQADKMTIDYNNTNRDVSNKINRM 99
           +H+KA M++V D      +   F+K +        +    ++  D NN   D+  +I  +
Sbjct: 39  VHLKATMMKVSDPIMFGQIVSEFYK-DAL---TKHAEVLKQIGFDVNNGIGDLYARIKTL 94

Query: 100 DVERNIFIQSG 110
              +   I++ 
Sbjct: 95  PEAKQKEIEAD 105


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,216,752
Number of extensions: 49173
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 20
Length of query: 181
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 98
Effective length of database: 2,150,234
Effective search space: 210722932
Effective search space used: 210722932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)