HHsearch alignment for GI: 254780746 and conserved domain: pfam06835
>pfam06835 DUF1239 Protein of unknown function (DUF1239). This family consists of several hypothetical bacterial proteins of around 190 residues in length. The function of this family is unknown.
Probab=99.91 E-value=2.5e-21 Score=139.35 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECEEEEEECCCCC-EEEEEEEEEEECCCCCCCEEEEEEEEEEEEEC
Q ss_conf 99999987642003444445443134554305871108998849988-89999601133588987449999568999816
Q gi|254780746|r 35 TVTIVGWFLLSSWIRISTFSKSSIDLLDFEPMIMKKFILSDYSKDRV-KYSLVAERAKTSFNSGKGIIFLQDFELTVPTQ 113 (215)
Q Consensus 35 al~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~P~~~G~~~~g~-~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~ 113 (215)
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~pDy~~~~~~~~~~d~~G~l~~~l~a~~~~~~~--~~~~~~l~~P~~~~~~~ 81 (176)
T pfam06835 4 ALLLAGWLLWLLSEESSQDEPQVKPDPSEPDYTAENLTTTQYDEQGKLQYRLTADKLEHYP--DDDTTEFTNPVLIIYQD 81 (176)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECEEEEEC--CCCCEEEEEEEEEEECC
T ss_conf 9999999998663765333553568999998999922999999999899999904579965--89968999639999779
Q ss_pred CCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECC----CCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEE
Q ss_conf 88456799993458997356469997777999515----73999821279972038995385899907718997079999
Q gi|254780746|r 114 RSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKD----NLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIE 189 (215)
Q Consensus 114 ~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~----G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~ 189 (215)
T Consensus 82 ~~--~~w~i~A~~g~~~~~~~~i~L~g~V~i~~~~~~~~~~~l~T~~l~~~~~~~~~~td~~V~i~~~~~~~~g~gm~~~ 159 (176)
T pfam06835 82 GK--PPWTITADRAKLNKDGQTLYLYGNVVIQSLEDKSRLTTITTENLTVNLDTQDASTDQPVTITGPNFVSTGTGMKAN 159 (176)
T ss_pred CC--CEEEEEECEEEEECCCCEEEEECCEEEEECCCCCCCEEEEEHEEEEECCCCEEEECCCEEEEECCCEEEEEEEEEE
T ss_conf 98--3699997949993799699998999999768998756999220999947779994874999909979998889999
Q ss_pred ECCCEEEEECCEEEEEC
Q ss_conf 27868999889699983
Q gi|254780746|r 190 NSSRSAVFAGQVSVVVN 206 (215)
Q Consensus 190 ~~~~~i~F~g~V~l~i~ 206 (215)
T Consensus 160 l~~~~~~l~~~Vr~~ye 176 (176)
T pfam06835 160 LKTGTAELLSNVRGRYE 176 (176)
T ss_pred CCCCEEEEECCCEEEEC
T ss_conf 75899999436169959