Query gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs 158 out of 565
Neff 7.9
Searched_HMMs 33803
Date Wed Jun 1 14:04:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780746.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2r19_A Protein YHBN; beta-jel 98.8 1.8E-08 5.4E-13 66.3 6.6 126 78-212 5-145 (159)
2 >2r19_A Protein YHBN; beta-jel 98.7 1.1E-07 3.2E-12 61.9 9.1 94 118-212 8-112 (159)
3 >3hd7_B Syntaxin-1A; membrane 46.7 17 0.0005 15.6 3.5 30 15-44 73-102 (109)
4 >3hd7_A Vesicle-associated mem 25.1 39 0.0011 13.5 3.6 20 6-25 41-60 (91)
5 >1tzs_X 23-MER peptide from PE 16.1 40 0.0012 13.5 0.2 15 27-41 1-15 (26)
6 >3ge2_A Lipoprotein, putative; 15.0 66 0.0019 12.2 4.7 44 113-161 79-122 (130)
7 >3bz1_B Photosystem II core li 10.3 76 0.0022 11.9 0.3 18 68-87 76-93 (175)
8 >2k0q_A Putative uncharacteriz 9.6 99 0.0029 11.2 2.3 50 109-158 9-58 (74)
9 >1o57_A PUR operon repressor; 8.8 1.1E+02 0.0031 11.1 1.8 16 16-31 2-17 (76)
10 >2jzl_A Cyanovirin-N homolog; 8.1 1.1E+02 0.0034 10.9 0.5 44 81-136 4-47 (58)
No 1
>>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:)
Probab=98.76 E-value=1.8e-08 Score=66.26 Aligned_cols=126 Identities=6% Similarity=0.035 Sum_probs=97.5
Q ss_pred CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEE-----------EEECCEEEEE
Q ss_conf 99888999960113358898744999956899981688456799993458997356469-----------9977779995
Q gi|254780746|r 78 KDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTL-----------YISQPFKMKV 146 (215)
Q Consensus 78 ~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l-----------~L~g~V~i~~ 146 (215)
....++.|+|+++.-+. ..+.+.+.+ .+.+ ..+. ..|+|++..|+..++.. ...|+|++.
T Consensus 5 ~~~~~i~i~Ad~~~~~~--~~~~~~~~G-nV~i--~~~~---~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~- 75 (159)
T 2r19_A 5 DTDQPIHIESDQQSLDM--QGNVVTFTG-NVIV--TQGT---IKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDN- 75 (159)
T ss_dssp GGGSCEEEEESEEEEET--TTTEEEEEE-EEEE--EETT---EEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTT-
T ss_pred CCCCCEEEEECEEEEEC--CCCEEEEEC-CEEE--EECC---EEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCC-
T ss_conf 77899799956599235--699999975-6899--8086---7999989999977886642578751341189995168-
Q ss_pred CCCCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEECCCEEEEECC----EEEEECHHHHCC
Q ss_conf 157399982127997203899538589990771899707999927868999889----699983113201
Q gi|254780746|r 147 KDNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVFAGQ----VSVVVNPGVLQK 212 (215)
Q Consensus 147 ~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~----V~l~i~p~~~~~ 212 (215)
.++..++++.+.|+.+++.+...++|.+..+.+.++|+.+.++.+.+.+...+. +++.+.|..+.+
T Consensus 76 ~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 145 (159)
T 2r19_A 76 GKPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQD 145 (159)
T ss_dssp SCCEEEECSEEEEEGGGTEEEEEEEEEEEETTEEEEEEEEEEETTTTEEEEECSSSCCCCCCC-------
T ss_pred CCEEEEEEEEEEEECCCCEEEEECCEEEEECCCEEEECEEEEEECCCEEEEECCCCCCEEEEECCCCCCC
T ss_conf 8339999845799746888998067899958999996789999168999996589994599999876676
No 2
>>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A (A:)
Probab=98.71 E-value=1.1e-07 Score=61.93 Aligned_cols=94 Identities=5% Similarity=0.012 Sum_probs=80.6
Q ss_pred EEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEEE-----------EEECCCEEEEECCCEEEEEEE
Q ss_conf 679999345899735646999777799951573999821279972038-----------995385899907718997079
Q gi|254780746|r 118 GDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNIT-----------INSSDPVIITHSDFVLSANFA 186 (215)
Q Consensus 118 ~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~~-----------i~s~~~V~~~~~~g~i~A~~m 186 (215)
.++.|.|+...||..++.+.+.|||+|...+ +.|.++.+.|+.+++. +...++|.+..++..++|+.+
T Consensus 8 ~~i~i~Ad~~~~~~~~~~~~~~GnV~i~~~~-~~l~ad~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~ 86 (159)
T 2r19_A 8 QPIHIESDQQSLDMQGNVVTFTGNVIVTQGT-IKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNGKPVEGHASQM 86 (159)
T ss_dssp SCEEEEESEEEEETTTTEEEEEEEEEEEETT-EEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTSCCEEEECSEE
T ss_pred CCEEEEECEEEEECCCCEEEEECCEEEEECC-EEEEEEEEEEEECCCCCCEEEEEEECCCEEEEEECCCCCEEEEEEEEE
T ss_conf 9979995659923569999997568998086-799998999997788664257875134118999516883399998457
Q ss_pred EEEECCCEEEEECCEEEEECHHHHCC
Q ss_conf 99927868999889699983113201
Q gi|254780746|r 187 RIENSSRSAVFAGQVSVVVNPGVLQK 212 (215)
Q Consensus 187 ~i~~~~~~i~F~g~V~l~i~p~~~~~ 212 (215)
.++.+.+.+.|.|+|++.-....++.
T Consensus 87 ~y~~~~~~~~~~g~~~~~~~~~~~~g 112 (159)
T 2r19_A 87 HYELAKDFVVLTGNAYLQQVDSNIKG 112 (159)
T ss_dssp EEEGGGTEEEEEEEEEEEETTEEEEE
T ss_pred EEECCCCEEEEECCEEEEECCCEEEE
T ss_conf 99746888998067899958999996
No 3
>>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B (B:)
Probab=46.67 E-value=17 Score=15.59 Aligned_cols=30 Identities=10% Similarity=-0.134 Sum_probs=11.9
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 520103688999999999999999998764
Q gi|254780746|r 15 SKYRQHVRFIQFLKFFFPFATVTIVGWFLL 44 (215)
Q Consensus 15 ~~~~r~Sr~V~~lKi~Lpl~al~i~~~~~~ 44 (215)
.+|.+|.+.-+..++++.++++++++++.+
T Consensus 73 ~kA~~~~~~~r~~~~~~~~~~~~~~l~~~~ 102 (109)
T 3hd7_B 73 KKAVKYQSKARRKKIMIIICCVILGIIIAS 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999987341998999999999999999
No 4
>>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A (A:)
Probab=25.10 E-value=39 Score=13.53 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=8.9
Q ss_pred HHCCCCHHHHHCCCHHHHHH
Q ss_conf 54112023552010368899
Q gi|254780746|r 6 RRNKILLQRSKYRQHVRFIQ 25 (215)
Q Consensus 6 rr~~~~~~~~~~~r~Sr~V~ 25 (215)
+-..+.......++.++.++
T Consensus 41 ks~~L~~~s~~F~~~a~~l~ 60 (91)
T 3hd7_A 41 RADALQAGASQFETSAAKLK 60 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 89988788999999999999
No 5
>>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} (X:)
Probab=16.09 E-value=40 Score=13.47 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q gi|254780746|r 27 LKFFFPFATVTIVGW 41 (215)
Q Consensus 27 lKi~Lpl~al~i~~~ 41 (215)
+|++||.+|.++++.
T Consensus 1 mkyllptaaagllll 15 (26)
T 1tzs_X 1 MKYLLPTAAAGLLLL 15 (26)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 952130078788999
No 6
>>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae TIGR4} (A:)
Probab=14.97 E-value=66 Score=12.24 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=33.7
Q ss_pred CCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEE
Q ss_conf 6884567999934589973564699977779995157399982127997
Q gi|254780746|r 113 QRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDV 161 (215)
Q Consensus 113 ~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~ 161 (215)
.||++ ..+.=.+|..++.+...++|++++-+|-.|.-+.+.-+-
T Consensus 79 ~DG~k-----eikqV~~da~NQrmiIGDDvK~Y~~nGNQltv~d~d~dp 122 (130)
T 3ge2_A 79 SDGDQ-----KVKQVTFDSANQRXIIGDDVKIYTVNGNQIVVDDXDRDP 122 (130)
T ss_dssp TTSCE-----EEEEEEEETTTTEEEETTEEEEEEEETTEEEEECTTCCG
T ss_pred CCCCC-----EEEEEEECCCCCEEEECCCEEEEEECCCEEEEEECCCCC
T ss_conf 57760-----446788706774588625502788628688873055697
No 7
>>3bz1_B Photosystem II core light harvesting protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_B* 1w5c_B* 2axt_B* 3bz2_B* 3a0b_B* 3a0h_B* 1izl_B* (B:266-440)
Probab=10.30 E-value=76 Score=11.89 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=9.4
Q ss_pred EECEEEEEECCCCCEEEEEE
Q ss_conf 71108998849988899996
Q gi|254780746|r 68 MKKFILSDYSKDRVKYSLVA 87 (215)
Q Consensus 68 m~~P~~~G~~~~g~~~~itA 87 (215)
+-.|.| .+.+|+...+.-
T Consensus 76 lGH~vF--~dkeG~eL~VRR 93 (175)
T 3bz1_B 76 KGHAVF--RNKEGEELFVRR 93 (175)
T ss_dssp CCEEEE--ECTTCCEEEECC
T ss_pred CCCCEE--CCCCCCEEEEEE
T ss_conf 676133--179975666442
No 8
>>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 3dso_A 3dsp_A (A:)
Probab=9.55 E-value=99 Score=11.24 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=25.3
Q ss_pred EEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEE
Q ss_conf 99816884567999934589973564699977779995157399982127
Q gi|254780746|r 109 TVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAV 158 (215)
Q Consensus 109 ~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~ 158 (215)
.+.+.||+..-++=..+-|.=+.-.+-+.+..+-.+.+.||..+....-.
T Consensus 9 sv~LkDGstvyiFKDGKM~mEdk~Gra~~m~~g~~meT~DG~~I~m~~dE 58 (74)
T 2k0q_A 9 TYDLQDGSKVHVFKDGKMGMENKFGKSMNMPEGKVMETRDGTKIIMKGNE 58 (74)
T ss_dssp EEEBTTSCEEEEETTSCEEEECTTSCEECCCBTCEEEBTTSCEEEEETTE
T ss_pred EEECCCCCEEEEEECCCCCCHHHCCCEEECCCCCEEEECCCCEEEEECCH
T ss_conf 68726897899971673100010584277468836880488568871525
No 9
>>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} (A:1-76)
Probab=8.82 E-value=1.1e+02 Score=11.07 Aligned_cols=16 Identities=19% Similarity=0.673 Sum_probs=14.1
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 2010368899999999
Q gi|254780746|r 16 KYRQHVRFIQFLKFFF 31 (215)
Q Consensus 16 ~~~r~Sr~V~~lKi~L 31 (215)
|.+|..|.|...++++
T Consensus 2 K~~RseRlv~it~~Ll 17 (76)
T 1o57_A 2 KFRRSGRLVDLTNYLL 17 (76)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
T ss_conf 7653106999999997
No 10
>>2jzl_A Cyanovirin-N homolog; CVNH, antiviral protein, carbohydrate binding protein; NMR {Neurospora crassa} (A:1-44,A:101-114)
Probab=8.07 E-value=1.1e+02 Score=10.88 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=26.4
Q ss_pred CEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEE
Q ss_conf 88999960113358898744999956899981688456799993458997356469
Q gi|254780746|r 81 VKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTL 136 (215)
Q Consensus 81 ~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l 136 (215)
.+|.++|+.|.-... ++...| .|++.-.+|+|.+ +.|..+.+++
T Consensus 4 msfhvtaedarievr--dnrtil---farlrredgewnd-------asyelDqeiv 47 (58)
T 2jzl_A 4 MSFHVTAEDARIEVR--DNRTIL---FARLRREDGEWND-------ASYELDQEIV 47 (58)
T ss_dssp CCSSSCCCSCEEEEE--TTEEEE---EEEEECTTSCEEE-------EEEEGGGTTE
T ss_pred CCCHHHHCCEEEEEC--CCCEEE---EEEEECCCCCEEE-------EEEECHHHCE
T ss_conf 010230044699715--997299---9997789887998-------8981065717
Done!