Query gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs 158 out of 565
Neff 7.9
Searched_HMMs 23785
Date Mon May 30 13:46:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780746.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3my2_A Lipopolysaccharide expo 99.8 7.7E-19 3.2E-23 124.1 14.2 144 65-212 25-173 (175)
2 2r19_A Protein YHBN; beta-jell 98.8 3.4E-08 1.4E-12 63.9 10.2 129 78-214 5-147 (159)
3 3my2_A Lipopolysaccharide expo 98.5 1.6E-05 6.6E-10 48.8 15.6 108 64-176 58-166 (175)
4 2r19_A Protein YHBN; beta-jell 97.6 0.00073 3.1E-08 39.4 10.3 52 119-171 78-129 (159)
5 2kog_A Vesicle-associated memb 47.1 12 0.00049 15.6 3.2 28 14-41 77-110 (119)
6 3hd7_B Syntaxin-1A; membrane p 42.9 14 0.00057 15.3 3.8 21 15-35 73-93 (109)
7 1tzs_X 23-MER peptide from PEL 15.9 28 0.0012 13.4 0.2 15 27-41 1-15 (26)
8 3pe5_A Uncharacterized protein 14.8 29 0.0012 13.4 0.0 15 24-38 31-45 (403)
9 3ejx_A DAP epimerase, diaminop 14.0 49 0.0021 12.1 3.9 38 169-209 272-309 (317)
10 3hd7_A Vesicle-associated memb 10.8 63 0.0026 11.5 3.6 16 10-25 45-60 (91)
No 1
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli}
Probab=99.81 E-value=7.7e-19 Score=124.08 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=124.9
Q ss_pred EEEEECEEEEEECCCCC-EEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCEE
Q ss_conf 05871108998849988-89999601133588987449999568999816884567999934589973564699977779
Q gi|254780746|r 65 PMIMKKFILSDYSKDRV-KYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPFK 143 (215)
Q Consensus 65 ~~~m~~P~~~G~~~~g~-~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V~ 143 (215)
...+++....-++.+|. .|.|+|+++.... +.+.+.|+.|...++..++. ..+.|+|++|.++.. +.+.|.|||+
T Consensus 25 dy~~~~~~~~~~d~~G~l~~~l~A~~~~~~~--~~~~~~l~~P~~~~~~~~~~-~~w~itA~~g~~~~~-~~l~L~gnV~ 100 (175)
T 3my2_A 25 TYKSEHTDTLVYNPEGALSYRLIAQHVEYYS--DQAVSWFTQPVLTTFDKDKI-PTWSVKADKAKLTND-RMLYLYGHVE 100 (175)
T ss_dssp ------------------CEEEECSSEEEET--TTTEEEEESCEEEEECTTCC-EEEEEECSEEEECTT-SEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCCEEEEEECCHHEECC--CCCCEEEECCEEEEECCCCC-CEEEEEECEEEECCC-CEEEEECEEE
T ss_conf 4999951899999999899999916314214--88964882559999748998-229999385898799-6899964099
Q ss_pred EEECCC----CEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHHHHCC
Q ss_conf 995157----399982127997203899538589990771899707999927868999889699983113201
Q gi|254780746|r 144 MKVKDN----LRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPGVLQK 212 (215)
Q Consensus 144 i~~~~G----~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~~~~~ 212 (215)
+...++ +.|.|+.+.|+.+++.+.|+.||.++++++.++|.||+++.+.+.+.|.|+||..|.|..-+.
T Consensus 101 i~~~~~~~~~~~l~T~~L~~~~~~~~~~td~~V~i~~~~~~~~g~gm~~~l~~~~~~l~~~Vk~~ye~~~~~~ 173 (175)
T 3my2_A 101 VNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSGLKMRGNLRSKNAELIEKVRTSYEIQNKQT 173 (175)
T ss_dssp EEECSSSCSEEEEEEEEEEEETTTCEEEEEEEEEEEESSCEEEEEEEEEETTTTEEEEEEEEEETTCC-----
T ss_pred EEECCCCCCCEEEEEEEEEEEECCCEEEECCCEEEECCCCEEEEEEEEEECCCCEEEEECCEEEEEECCCCCC
T ss_conf 9963788874699981599991567999488499992996999778999963899999406289992886678
No 2
>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A
Probab=98.82 E-value=3.4e-08 Score=63.91 Aligned_cols=129 Identities=7% Similarity=0.008 Sum_probs=93.1
Q ss_pred CCCCEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCC-----EEEEECCEEEE-----EC
Q ss_conf 998889999601133588987449999568999816884567999934589973564-----69997777999-----51
Q gi|254780746|r 78 KDRVKYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANH-----TLYISQPFKMK-----VK 147 (215)
Q Consensus 78 ~~g~~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~-----~l~L~g~V~i~-----~~ 147 (215)
+..+|+.|+|+++.-+. ..+.+.+++ .+.+..|. ..|+|+...|....+ .....+.+... ..
T Consensus 5 D~~qpi~I~Ad~l~~d~--~~~~~~~~G---nV~i~~g~---~~i~ad~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (159)
T 2r19_A 5 DTDQPIHIESDQQSLDM--QGNVVTFTG---NVIVTQGT---IKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG 76 (159)
T ss_dssp GGGSCEEEEESEEEEET--TTTEEEEEE---EEEEEETT---EEEEEEEEEEECCC--CTTCEEEEECSSCEEEECCTTS
T ss_pred CCCCCEEEEECEEEEEC--CCCEEEEEC---CEEEEECC---EEEEEEEEEEEECCCCCCEEEEEECCCEEEEEEEECCC
T ss_conf 77899899977799660--899999981---48998487---69999779999537765214676214316899971588
Q ss_pred CCCEEEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEECCCEEEEECC----EEEEECHHHHCCCC
Q ss_conf 57399982127997203899538589990771899707999927868999889----69998311320125
Q gi|254780746|r 148 DNLRLDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVFAGQ----VSVVVNPGVLQKKE 214 (215)
Q Consensus 148 ~G~~l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~----V~l~i~p~~~~~~~ 214 (215)
......++.+.|+.+++.+...+.|.+......|+|+.+.++.+.+++...|. |+++|.|...+++.
T Consensus 77 ~~~~a~a~~~~Y~~~~~~~~l~Gna~l~q~~~~i~g~~i~y~~~~~~~~~~g~~~~RV~~~~~P~~~~~~~ 147 (159)
T 2r19_A 77 KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRVTTVLVPSQLQDKN 147 (159)
T ss_dssp CCEEEECSEEEEEGGGTEEEEEEEEEEEETTEEEEEEEEEEETTTTEEEEECSSSCCCCCCC---------
T ss_pred CEEEEEEEEEEEECCCCEEEEECCEEEEECCCEEEEEEEEEECCCCEEEEECCCCCCEEEEECCCCCCCCC
T ss_conf 43999998999977799999964199997999999759999906899999658999589999976556678
No 3
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli}
Probab=98.47 E-value=1.6e-05 Score=48.83 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=85.8
Q ss_pred CEEEEECEEEEEECCCCC-EEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCEEEEECCE
Q ss_conf 305871108998849988-8999960113358898744999956899981688456799993458997356469997777
Q gi|254780746|r 64 EPMIMKKFILSDYSKDRV-KYSLVAERAKTSFNSGKGIIFLQDFELTVPTQRSEYGDMYLFAHSARFNLANHTLYISQPF 142 (215)
Q Consensus 64 ~~~~m~~P~~~G~~~~g~-~~~itA~~A~~~~~~~~~~i~L~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~~l~L~g~V 142 (215)
....+++|.+.-+..+|. .|.|+|++|.-+ .+ +.+.|.+ ...+....+......|.++...|+..++.+.-.+.|
T Consensus 58 ~~~~l~~P~~~~~~~~~~~~w~itA~~g~~~--~~-~~l~L~g-nV~i~~~~~~~~~~~l~T~~L~~~~~~~~~~td~~V 133 (175)
T 3my2_A 58 AVSWFTQPVLTTFDKDKIPTWSVKADKAKLT--ND-RMLYLYG-HVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLV 133 (175)
T ss_dssp TEEEEESCEEEEECTTCCEEEEEECSEEEEC--TT-SEEEEEE-EEEEEECSSSCSEEEEEEEEEEEETTTCEEEEEEEE
T ss_pred CCEEEECCEEEEECCCCCCEEEEEECEEEEC--CC-CEEEEEC-EEEEEECCCCCCCEEEEEEEEEEEECCCEEEECCCE
T ss_conf 9648825599997489982299993858987--99-6899964-099996378887469998159999156799948849
Q ss_pred EEEECCCCEEEEEEEEEEEEEEEEEECCCEEEEE
Q ss_conf 9995157399982127997203899538589990
Q gi|254780746|r 143 KMKVKDNLRLDFETAVLDVKNITINSSDPVIITH 176 (215)
Q Consensus 143 ~i~~~~G~~l~t~~~~~d~~~~~i~s~~~V~~~~ 176 (215)
+|...+ ..+.+..+.+|++.+.+...+.|.+.-
T Consensus 134 ~i~~~~-~~~~g~gm~~~l~~~~~~l~~~Vk~~y 166 (175)
T 3my2_A 134 TLYGTT-FNSSGLKMRGNLRSKNAELIEKVRTSY 166 (175)
T ss_dssp EEEESS-CEEEEEEEEEETTTTEEEEEEEEEETT
T ss_pred EEECCC-CEEEEEEEEEECCCCEEEEECCEEEEE
T ss_conf 999299-699977899996389999940628999
No 4
>2r19_A Protein YHBN; beta-jellyroll, mainly beta, beta-TACO, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; 2.16A {Escherichia coli K12} PDB: 2r1a_A
Probab=97.60 E-value=0.00073 Score=39.39 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=38.6
Q ss_pred EEEEEEEEEEEECCCCEEEEECCEEEEECCCCEEEEEEEEEEEEEEEEEECCC
Q ss_conf 79999345899735646999777799951573999821279972038995385
Q gi|254780746|r 119 DMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDP 171 (215)
Q Consensus 119 ~i~i~A~~G~y~~~~~~l~L~g~V~i~~~~G~~l~t~~~~~d~~~~~i~s~~~ 171 (215)
.+...|+++.|+..++.+.|.|+|.+... +..+..+.+.|+++++.+...+.
T Consensus 78 ~~~a~a~~~~Y~~~~~~~~l~Gna~l~q~-~~~i~g~~i~y~~~~~~~~~~g~ 129 (159)
T 2r19_A 78 PVEGHASQMHYELAKDFVVLTGNAYLQQV-DSNIKGDKITYLVKEQKMQAFSD 129 (159)
T ss_dssp CEEEECSEEEEEGGGTEEEEEEEEEEEET-TEEEEEEEEEEETTTTEEEEECS
T ss_pred EEEEEEEEEEEECCCCEEEEECCEEEEEC-CCEEEEEEEEEECCCCEEEEECC
T ss_conf 39999989999777999999641999979-99999759999906899999658
No 5
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=47.15 E-value=12 Score=15.64 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=10.8
Q ss_pred HHHCCCHHHHHH------HHHHHHHHHHHHHHHH
Q ss_conf 552010368899------9999999999999998
Q gi|254780746|r 14 RSKYRQHVRFIQ------FLKFFFPFATVTIVGW 41 (215)
Q Consensus 14 ~~~~~r~Sr~V~------~lKi~Lpl~al~i~~~ 41 (215)
....++.++.++ -.|+.+.++.++++++
T Consensus 77 s~~F~k~A~kL~r~mwwrn~K~~ii~~~v~~i~i 110 (119)
T 2kog_A 77 ASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=42.90 E-value=14 Score=15.25 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=7.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHH
Q ss_conf 520103688999999999999
Q gi|254780746|r 15 SKYRQHVRFIQFLKFFFPFAT 35 (215)
Q Consensus 15 ~~~~r~Sr~V~~lKi~Lpl~a 35 (215)
.+|.+|.+.-+..++++.++.
T Consensus 73 ~kA~~~qk~~~k~~~~~~~~~ 93 (109)
T 3hd7_B 73 KKAVKYQSKARRKKIMIIICC 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999997340998999999
No 7
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=15.92 E-value=28 Score=13.43 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q gi|254780746|r 27 LKFFFPFATVTIVGW 41 (215)
Q Consensus 27 lKi~Lpl~al~i~~~ 41 (215)
+|++||.+|.++++.
T Consensus 1 mkyllptaaagllll 15 (26)
T 1tzs_X 1 MKYLLPTAAAGLLLL 15 (26)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 952130078788999
No 8
>3pe5_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.38A {Clostridium leptum}
Probab=14.76 E-value=29 Score=13.42 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780746|r 24 IQFLKFFFPFATVTI 38 (215)
Q Consensus 24 V~~lKi~Lpl~al~i 38 (215)
-+..++++.++++++
T Consensus 31 r~~~~~i~~~~~ll~ 45 (403)
T 3pe5_A 31 RKVSNVIIIILCVVF 45 (403)
T ss_dssp ---------------
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 168999999999999
No 9
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=14.03 E-value=49 Score=12.09 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=26.5
Q ss_pred CCCEEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHHH
Q ss_conf 38589990771899707999927868999889699983113
Q gi|254780746|r 169 SDPVIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPGV 209 (215)
Q Consensus 169 ~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~~ 209 (215)
+.++.+..++|.+. .++..++..+.+.|.+..+++..-
T Consensus 272 ~~~~~V~~~GG~L~---V~~~~~~~~v~l~G~A~~v~~G~i 309 (317)
T 3ejx_A 272 DRKCTVDLPGGPLE---IEWKQEDNHIYMTGPAEAVFYGSA 309 (317)
T ss_dssp CSEEEEEETTEEEE---EEECTTTSCEEEEECCEEEEEEEE
T ss_pred CCCEEEEECCCEEE---EEEEECCCEEEEEECEEEEEEEEE
T ss_conf 96189995897899---999908997999907499999899
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=10.76 E-value=63 Score=11.49 Aligned_cols=16 Identities=6% Similarity=0.166 Sum_probs=6.2
Q ss_pred CCHHHHHCCCHHHHHH
Q ss_conf 2023552010368899
Q gi|254780746|r 10 ILLQRSKYRQHVRFIQ 25 (215)
Q Consensus 10 ~~~~~~~~~r~Sr~V~ 25 (215)
+.......++-++.++
T Consensus 45 L~~~s~~F~~~a~~l~ 60 (91)
T 3hd7_A 45 LQAGASQFETSAAKLK 60 (91)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998999999999999
Done!