Query gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 215
No_of_seqs 158 out of 565
Neff 7.9
Searched_HMMs 13730
Date Wed Jun 1 08:49:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780746.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gkea2 d.21.1.1 (A:131-274) D 22.0 18 0.0013 13.2 4.0 38 168-208 104-141 (144)
2 d1o57a1 a.4.5.40 (A:2-74) N-te 12.2 32 0.0024 11.8 1.8 16 16-31 1-16 (73)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.6 77 0.0056 9.6 2.5 19 25-43 51-69 (248)
4 d1s28a_ d.198.1.1 (A:) AvrPphF 4.4 82 0.006 9.5 2.5 29 104-134 38-66 (130)
5 d2cs7a1 d.9.2.1 (A:0-54) Pneum 4.3 77 0.0056 9.6 -0.2 20 146-165 6-25 (55)
6 d1s16a1 d.14.1.3 (A:1217-1383) 3.9 70 0.0051 9.9 -0.7 11 70-80 20-30 (167)
7 d1hcda_ b.42.5.2 (A:) Histidin 3.8 1E+02 0.0073 9.0 2.8 13 120-132 43-55 (118)
8 d1ut1a_ b.2.3.6 (A:) DraA/Afim 3.6 1.1E+02 0.0078 8.8 2.8 73 119-193 56-136 (140)
9 d2ak4d1 b.1.1.1 (D:1-116) T-ce 3.4 1.1E+02 0.0082 8.7 1.4 17 191-207 98-114 (114)
10 d1jo5a_ f.3.1.1 (A:) Light-har 3.3 1.2E+02 0.0086 8.6 2.6 29 20-48 20-48 (48)
No 1
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=22.02 E-value=18 Score=13.18 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=27.9
Q ss_pred ECCCEEEEECCCEEEEEEEEEEECCCEEEEECCEEEEECHH
Q ss_conf 53858999077189970799992786899988969998311
Q gi|254780746|r 168 SSDPVIITHSDFVLSANFARIENSSRSAVFAGQVSVVVNPG 208 (215)
Q Consensus 168 s~~~V~~~~~~g~i~A~~m~i~~~~~~i~F~g~V~l~i~p~ 208 (215)
.+.++.+..|+|.+. ..+...+..+.++|.++.+++..
T Consensus 104 ~~~~i~V~~~GG~l~---V~~~~~~~~i~L~Gpa~~vf~G~ 141 (144)
T d2gkea2 104 LNNNVQVDLPGGSLM---IEWNGVGHPLYMTGEATHIYDGF 141 (144)
T ss_dssp SCSEEEEEETTEEEE---EEECCTTSCEEEEECCEEEEEEE
T ss_pred CCCCEEEEECCCEEE---EEEECCCCEEEEEECCEEEEEEE
T ss_conf 997399997898799---99988999899991679999999
No 2
>d1o57a1 a.4.5.40 (A:2-74) N-terminal domain of Bacillus PurR {Bacillus subtilis [TaxId: 1423]}
Probab=12.18 E-value=32 Score=11.77 Aligned_cols=16 Identities=19% Similarity=0.673 Sum_probs=13.7
Q ss_pred HCCCHHHHHHHHHHHH
Q ss_conf 2010368899999999
Q gi|254780746|r 16 KYRQHVRFIQFLKFFF 31 (215)
Q Consensus 16 ~~~r~Sr~V~~lKi~L 31 (215)
|.+|..|.|...|+++
T Consensus 1 K~~RseRlv~mt~~L~ 16 (73)
T d1o57a1 1 KFRRSGRLVDLTNYLL 16 (73)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9653579999999998
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.65 E-value=77 Score=9.63 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999876
Q gi|254780746|r 25 QFLKFFFPFATVTIVGWFL 43 (215)
Q Consensus 25 ~~lKi~Lpl~al~i~~~~~ 43 (215)
.-+|+++|..+++++..++
T Consensus 51 ~p~kyi~PG~~~l~~Fvi~ 69 (248)
T d2r6gf1 51 YAWRYVYPGMAGMGLFVLF 69 (248)
T ss_dssp TTHHHHHHHHHHHHHHTHH
T ss_pred CCEEHHHHHHHHHHHHHHH
T ss_conf 4110122389999999997
No 4
>d1s28a_ d.198.1.1 (A:) AvrPphF ORF1, chaperone of AvrPphF ORF2 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}
Probab=4.43 E-value=82 Score=9.48 Aligned_cols=29 Identities=3% Similarity=0.298 Sum_probs=20.3
Q ss_pred EEEEEEEEECCCCEEEEEEEEEEEEEECCCC
Q ss_conf 9568999816884567999934589973564
Q gi|254780746|r 104 QDFELTVPTQRSEYGDMYLFAHSARFNLANH 134 (215)
Q Consensus 104 ~~v~a~i~~~~g~~~~i~i~A~~G~y~~~~~ 134 (215)
..+..+|+-.+-.| +++.|+-|.|+....
T Consensus 38 ~~~~VkIYqd~~~w--vyf~s~iG~~~d~~~ 66 (130)
T d1s28a_ 38 KEVSIRIYQDKFKW--VYFLSDIGVIDNLDS 66 (130)
T ss_dssp GGGTEEEEECTTSE--EEEEEEEEECCSCHH
T ss_pred CCEEEEEEECCCCE--EEEEECCHHHCCCCH
T ss_conf 31348886325558--999301000213113
No 5
>d2cs7a1 d.9.2.1 (A:0-54) Pneumococcal histidine triad protein A, PhtA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=4.28 E-value=77 Score=9.63 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=7.3
Q ss_pred ECCCCEEEEEEEEEEEEEEE
Q ss_conf 51573999821279972038
Q gi|254780746|r 146 VKDNLRLDFETAVLDVKNIT 165 (215)
Q Consensus 146 ~~~G~~l~t~~~~~d~~~~~ 165 (215)
++|||.|.-..+.-+...|.
T Consensus 6 t~DGyiFd~~~I~~~t~~G~ 25 (55)
T d2cs7a1 6 TDDGYIFNASDIIEDTGDAY 25 (55)
T ss_dssp CTTSCBCCGGGCCEECSSEE
T ss_pred CCCCEEECHHHCEECCCCEE
T ss_conf 58870588888430579878
No 6
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=3.90 E-value=70 Score=9.85 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=4.0
Q ss_pred CEEEEEECCCC
Q ss_conf 10899884998
Q gi|254780746|r 70 KFILSDYSKDR 80 (215)
Q Consensus 70 ~P~~~G~~~~g 80 (215)
.|.|-....++
T Consensus 20 ~~~~~~~~~~~ 30 (167)
T d1s16a1 20 KPFIGNFAGDT 30 (167)
T ss_dssp EEEEEEEECSS
T ss_pred CCEEEEECCCC
T ss_conf 88798733786
No 7
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]}
Probab=3.76 E-value=1e+02 Score=8.98 Aligned_cols=13 Identities=15% Similarity=0.237 Sum_probs=8.3
Q ss_pred EEEEEEEEEEECC
Q ss_conf 9999345899735
Q gi|254780746|r 120 MYLFAHSARFNLA 132 (215)
Q Consensus 120 i~i~A~~G~y~~~ 132 (215)
|.+.+..|.|-..
T Consensus 43 iaLks~~GkYlsa 55 (118)
T d1hcda_ 43 VALKTHCGKYLSI 55 (118)
T ss_dssp EEEESSSSCEEEE
T ss_pred EEEEECCCCEEEE
T ss_conf 9999189999976
No 8
>d1ut1a_ b.2.3.6 (A:) DraA/Afimbrial adhesin Afa-III {Escherichia coli [TaxId: 562]}
Probab=3.57 E-value=1.1e+02 Score=8.83 Aligned_cols=73 Identities=7% Similarity=0.007 Sum_probs=0.0
Q ss_pred EEEEEEEEEEEECCCCEEEEEC-------CEEEEECCCCE-EEEEEEEEEEEEEEEEECCCEEEEECCCEEEEEEEEEEE
Q ss_conf 7999934589973564699977-------77999515739-998212799720389953858999077189970799992
Q gi|254780746|r 119 DMYLFAHSARFNLANHTLYISQ-------PFKMKVKDNLR-LDFETAVLDVKNITINSSDPVIITHSDFVLSANFARIEN 190 (215)
Q Consensus 119 ~i~i~A~~G~y~~~~~~l~L~g-------~V~i~~~~G~~-l~t~~~~~d~~~~~i~s~~~V~~~~~~g~i~A~~m~i~~ 190 (215)
++.++|+-|.|+. ..+.|.. +|.+...||-. -......|....|.=.+.=-|.+.+..-..-++...+..
T Consensus 56 qvAl~a~a~N~~~--g~~~m~~d~~~~kl~V~l~atdg~~Wt~d~gv~yr~~~G~W~G~i~i~V~GdQt~~ptg~YTLnL 133 (140)
T d1ut1a_ 56 QVALKADTDNFEQ--GKFFLISDNNRDKLYVNIRPTDNSAWTTDNGVFYKNDVGSWGGIIGIYVDGQQTNTPPGNYTLTL 133 (140)
T ss_dssp EEEEEECGGGEET--TEEEEEETTSCCEEEEEEEESSSCCEEEETTEEEESSCSCCEEEEEEEESSCCTTCCSEEEEEEE
T ss_pred EEEEECCCCCCCC--CEEEEECCCCCCEEEEEEEECCCCCEEECCCEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEEE
T ss_conf 3888748996338--80899715995379988884578870656888992579995457999995870468874289995
Q ss_pred CCC
Q ss_conf 786
Q gi|254780746|r 191 SSR 193 (215)
Q Consensus 191 ~~~ 193 (215)
++.
T Consensus 134 ~GG 136 (140)
T d1ut1a_ 134 TGG 136 (140)
T ss_dssp EEE
T ss_pred CCC
T ss_conf 272
No 9
>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}
Probab=3.41 E-value=1.1e+02 Score=8.69 Aligned_cols=17 Identities=18% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCEEEEECCEEEEECH
Q ss_conf 78689998896999831
Q gi|254780746|r 191 SSRSAVFAGQVSVVVNP 207 (215)
Q Consensus 191 ~~~~i~F~g~V~l~i~p 207 (215)
....+.|..|.+|...|
T Consensus 98 ~~~~l~FG~GT~L~V~p 114 (114)
T d2ak4d1 98 NTDKLIFGTGTRLQVFP 114 (114)
T ss_dssp TTSCCEECCCEEEEEEC
T ss_pred CCCCCEECCCEEEEEEC
T ss_conf 88727889998999989
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.28 E-value=1.2e+02 Score=8.58 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 36889999999999999999987642003
Q gi|254780746|r 20 HVRFIQFLKFFFPFATVTIVGWFLLSSWI 48 (215)
Q Consensus 20 ~Sr~V~~lKi~Lpl~al~i~~~~~~~~~~ 48 (215)
|+-++..+.++..++.++=+++..+-+|+
T Consensus 20 H~~~~~g~~~F~~iAvvAH~L~w~wrPWF 48 (48)
T d1jo5a_ 20 HSVYMSGLWLFSAVAIVAHLAVYIWRPWF 48 (48)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999825879
Done!