RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780746|ref|YP_003065159.1| hypothetical protein
CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>gnl|CDD|148442 pfam06835, DUF1239, Protein of unknown function (DUF1239).  This
           family consists of several hypothetical bacterial
           proteins of around 190 residues in length. The function
           of this family is unknown.
          Length = 176

 Score = 32.2 bits (74), Expect = 0.10
 Identities = 24/170 (14%), Positives = 54/170 (31%), Gaps = 11/170 (6%)

Query: 38  IVGWFLLSSWIRISTFSKSSIDLLDFEPMIMKKFILSDYSKD-RVKYSLVAERAKTSFNS 96
           + GW L       S                 +    + Y +  +++Y L A++ +     
Sbjct: 7   LAGWLLWLLSEESSQDEPQVKPDPSEPDYTAENLTTTQYDEQGKLQYRLTADKLE--HYP 64

Query: 97  GKGIIFLQDFELTV-PTQRSEYGDMYLFAHSARFNLANHTLYISQPFKMK--VKDNLRLD 153
                   +  L +    +  +    + A  A+ N    TLY+     ++     +    
Sbjct: 65  DDDTTEFTNPVLIIYQDGKPPW---TITADRAKLNKDGQTLYLYGNVVIQSLEDKSRLTT 121

Query: 154 FET--AVLDVKNITINSSDPVIITHSDFVLSANFARIENSSRSAVFAGQV 201
             T    +++     ++  PV IT  +FV +    +    + +A     V
Sbjct: 122 ITTENLTVNLDTQDASTDQPVTITGPNFVSTGTGMKANLKTGTAELLSNV 171


>gnl|CDD|152094 pfam11658, DUF3260, Protein of unknown function (DUF3260).  Some
           members in this family of proteins are annotated as YhjU
           however this cannot be confirmed. Currently this family
           has no known function.
          Length = 516

 Score = 31.5 bits (72), Expect = 0.17
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 34  ATVTIVGWFLLSSWIRISTF 53
             V +V + LLS W+R++TF
Sbjct: 100 LFVLLVAYLLLSRWLRVTTF 119


>gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein YhjU. 
           This protein was identified by the partial phylogenetic
           profiling algorithm (PubMed:16930487) as part of the
           system for cellulose biosynthesis in bacteria, and in
           fact is found in cellulose biosynthesis gene regions.
           The protein was designated YhjU in Salmonella
           enteritidis, where disruption of its gene disrupts
           cellulose biosynthesis and biofilm formation
           (PubMed:11929533).
          Length = 518

 Score = 30.8 bits (70), Expect = 0.25
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 34  ATVTIVGWFLLSSWIRISTFS 54
             V +V + LL+ WIR++TF 
Sbjct: 101 IFVVLVAYLLLNQWIRVTTFV 121


>gnl|CDD|162076 TIGR00867, deg-1, degenerin.  This model is designed from the
           invertebrate members of the ENaC family.
          Length = 601

 Score = 30.5 bits (69), Expect = 0.29
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 64  EPMIMKKFILSDYSKDRVKYSLVAERAKTSFNSGKGIIFLQDFELTV-PTQRSEYGDMYL 122
           E +I     LS+ +++ + Y+      K SFN GK     +DF L + PT    +G+ Y 
Sbjct: 285 ENLIFAMAALSEEAREALSYTKSELILKCSFN-GKPCDIDRDFTLHIDPT----FGNCYT 339

Query: 123 FAHSARFNLANH 134
           F ++   NL + 
Sbjct: 340 FNYNRSVNLTSS 351


>gnl|CDD|181530 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.
          Length = 349

 Score = 30.2 bits (69), Expect = 0.41
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 160 DVKNITINSSDPVIITHSDFVLSA 183
           +V ++ + S+DP  +   D V SA
Sbjct: 60  EVADMEVVSTDPEAVDDVDIVFSA 83


>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter.  This
           model describes the photoreceptor protein (rim protein)
           in eukaryotes. It is the member of ABC transporter
           superfamily. Rim protein is a membrane glycoprotein
           which is localized in the photoreceptor outer segment
           discs. Mutation/s in its genetic loci is implicated in
           the recessive Stargardt's disease.
          Length = 2272

 Score = 27.7 bits (61), Expect = 2.1
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 6/36 (16%)

Query: 23  FIQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSI 58
           FI FL F   F+T TI+  FLLS++     FSK+S+
Sbjct: 731 FILFL-FLLAFSTATIMQCFLLSTF-----FSKASL 760


>gnl|CDD|140227 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
          Length = 448

 Score = 27.0 bits (60), Expect = 3.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 24 IQFLKFFFPFATVTIVGWFLLSSWIRISTFSKSSIDLLD 62
          I FL F F     +IV + L+S    + +F     + +D
Sbjct: 47 ISFLVFLFLAIGGSIVSYVLVSKSKMVKSFKSDLEEHID 85


>gnl|CDD|162144 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase
           (non-peptidoglycan organisms).  Two closely related
           families of aspartate-semialdehyde dehydrogenase are
           found. They differ by a deep split in phylogenetic and
           percent identity trees and in gap patterns. Separate
           models are built for the two types in order to exclude
           the USG-1 protein, found in several species, which is
           specifically related to the Bacillus subtilis type of
           aspartate-semialdehyde dehydrogenase. Members of this
           type are found primarily in organisms that lack
           peptidoglycan.
          Length = 341

 Score = 26.6 bits (59), Expect = 4.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 161 VKNITINSSDPVIITHSDFVLSA 183
           V+++ I   +PV     D V SA
Sbjct: 58  VRDLPIVEPEPVASKDVDIVFSA 80


>gnl|CDD|182579 PRK10598, PRK10598, lipoprotein; Provisional.
          Length = 186

 Score = 26.2 bits (58), Expect = 7.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 89  RAKTSFNSGKGIIFLQDFELT 109
           +A+  F+  KG I+L+D EL 
Sbjct: 99  KAQPVFDKEKGAIYLKDMELV 119


>gnl|CDD|177842 PLN02190, PLN02190, cellulose synthase-like protein.
          Length = 756

 Score = 25.6 bits (56), Expect = 9.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 10  ILLQRSKYRQHVRFIQFLKFFF 31
           I LQ+SK   H  F+QF + F+
Sbjct: 311 IFLQKSKNSNHCAFVQFPQEFY 332


>gnl|CDD|150265 pfam09531, Ndc1_Nup, Nucleoporin protein Ndc1-Nup.  Ndc1 is a
           nucleoporin protein that is a component of the Nuclear
           Pore Complex, and, in fungi, also of the Spindle Pole
           Body. It consists of six transmembrane segments, three
           lumenal loops, both concentrated at the N-terminus and
           cytoplasmic domains largely at the C-terminus, all of
           which are well conserved.
          Length = 554

 Score = 25.7 bits (57), Expect = 9.4
 Identities = 5/27 (18%), Positives = 13/27 (48%)

Query: 22  RFIQFLKFFFPFATVTIVGWFLLSSWI 48
           R    L   F  + +  +  +++S+W+
Sbjct: 79  RIATILGSLFSLSFLLTLLTYVVSAWL 105


>gnl|CDD|162785 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain.  This
          domain is related to domains found in FCP1-like
          phosphatases (TIGR02250), and together both are
          detected by the Pfam model pfam03031.
          Length = 162

 Score = 25.7 bits (57), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 2  DHLDRRNKILLQRSKYRQHVRFIQ 25
          D LDR  K++ +R  YR+   F  
Sbjct: 76 DILDRGGKVISRRL-YRESCVFTN 98


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.325    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,411,883
Number of extensions: 205476
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 21
Length of query: 215
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 126
Effective length of database: 4,071,361
Effective search space: 512991486
Effective search space used: 512991486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.0 bits)