RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780746|ref|YP_003065159.1| hypothetical protein
CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)



>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase,
           PUS10, RNA modification, thump domain, lyase; HET: EPE;
           2.0A {Homo sapiens} (A:1-410)
          Length = 410

 Score = 25.4 bits (55), Expect = 7.0
 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 118 GDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDP-VIITH 176
            + + F+ S R ++   TL   +PF +++ +  R+ F +  +      IN+S   + +  
Sbjct: 333 AESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRD 392

Query: 177 SDFVLSANFARIENSSR 193
              V       ++    
Sbjct: 393 LQLVTREAIGHMKEGEE 409


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,525,395
Number of extensions: 62795
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 4
Length of query: 215
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 130
Effective length of database: 2,082,624
Effective search space: 270741120
Effective search space used: 270741120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.6 bits)