RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780746|ref|YP_003065159.1| hypothetical protein CLIBASIA_03165 [Candidatus Liberibacter asiaticus str. psy62] (215 letters) >2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domain, lyase; HET: EPE; 2.0A {Homo sapiens} (A:1-410) Length = 410 Score = 25.4 bits (55), Expect = 7.0 Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 118 GDMYLFAHSARFNLANHTLYISQPFKMKVKDNLRLDFETAVLDVKNITINSSDP-VIITH 176 + + F+ S R ++ TL +PF +++ + R+ F + + IN+S + + Sbjct: 333 AESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINNSSNKIQVRD 392 Query: 177 SDFVLSANFARIENSSR 193 V ++ Sbjct: 393 LQLVTREAIGHMKEGEE 409 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.137 0.392 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,525,395 Number of extensions: 62795 Number of successful extensions: 165 Number of sequences better than 10.0: 1 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 4 Length of query: 215 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 130 Effective length of database: 2,082,624 Effective search space: 270741120 Effective search space used: 270741120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 53 (24.6 bits)