HHsearch alignment for GI: 254780747 and conserved domain: COG0616
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=359.47 Aligned_cols=212 Identities=33% Similarity=0.553 Sum_probs=203.1
Q ss_pred CCEEEEEEEEEEEC---------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 87289999766623---------869999999998618998799997588888889999999999984147867996033
Q gi|254780747|r 35 SPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 (293)
Q Consensus 35 ~~~i~~i~i~G~I~---------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~ 105 (293)
T Consensus 58 ~~~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~ 137 (317)
T COG0616 58 SKVIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGG 137 (317)
T ss_pred CCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 85699997454653487763446677799999998508998738999989498468999999999987532989999887
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
T Consensus 138 ~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 138 YAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred CCCCHHHHHHHCCCEEEECCCCCCCCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 32028999984078798779860213501774566899998659860344232421114533336989999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 6778999985149998899887349823788998779806238989999999974187765
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~ 246 (293)
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~~~~ 278 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVKDV 278 (317)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHCCCEECHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCCC
T ss_conf 9999999972679970156787357686466624244427646788999999874366655